FF:11401-118D6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005894 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005894 | ||
|accession_numbers=CAGE;DRX008242;DRR009114;DRZ000539;DRZ001924;DRZ011889;DRZ013274 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037202;DRR041568;DRZ007210 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000058 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.68!53.20!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.65!115.27!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.98!HAND2;;chr8:55370487..55370503,+!p1@SOX17!1.65!43.27!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.45!36.53!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.42!77.32!GATA6;;chr1:170633262..170633285,+!p3@PRRX1!1.37!25.89!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.37!22.34!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.57!ZBED1;;chr18:19749386..19749404,+!p2@GATA6!1.25!24.12!GATA6;;chr6:34204921..34204939,+!p3@HMGA1!1.24!482.35!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.17!70.93!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.15!17.02!PRRX2;;chr15:67430351..67430366,+!p10@SMAD3!1.15!13.12!SMAD3;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.19!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.12!31.92!HIC1;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.02!NFIX;;chr2:239756671..239756732,+!p1@TWIST2!1.08!35.47!TWIST2;;chr1:170632477..170632506,+!p6@PRRX1!1.08!10.99!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.64!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.64!TCF21;;chr2:239756739..239756755,+!p2@TWIST2!1.02!16.31!TWIST2;;chr2:68592406..68592424,+!p1@PLEK!1.02!9.58!PLEK;;chr16:86600426..86600441,+!p1@FOXC2!1.01!23.05!FOXC2;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.83!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.96!10.29!FOXF1;;chr11:46299539..46299620,+!p2@CREB3L1!0.93!13.12!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!0.93!12.77!TCF12;;chr8:72756637..72756664,-!p3@MSC!0.93!8.51!MSC;;chr9:132427883..132427951,+!p2@PRRX2!0.91!7.09!PRRX2;;chr11:65686802..65686818,+!p6@DRAP1!0.89!12.06!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!0.89!9.58!FOXF2;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.74!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.88!7.45!SMAD3;;chr19:50432453..50432468,+!p1@ATF5!0.87!376.66!ATF5;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.57!HMGA2;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.16!SMAD3;;chr19:13135582..13135600,+!p3@NFIX!0.87!6.38!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.03!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.83!16.67!TWIST1;;chr18:19749517..19749531,+!p3@GATA6!0.83!10.64!GATA6;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.66!DRAP1;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.67!PRRX1;;chr4:174451350..174451363,-!p3@HAND2!0.82!5.67!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.47!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.70!FOSL1;;chr8:72756667..72756736,-!p2@MSC!0.80!8.51!MSC;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.38!MECOM;;chr3:25470156..25470227,+!p2@RARB!0.80!5.32!RARB;;chr18:19749353..19749367,+!p4@GATA6!0.80!5.32!GATA6;;chr19:47523058..47523114,+!p1@NPAS1!0.80!5.32!NPAS1;;chr5:133450365..133450444,+!p1@TCF7!0.78!24.83!TCF7;;chr8:77593474..77593612,+!p1@ZFHX4!0.78!23.05!ZFHX4;;chr8:25902876..25902936,-!p1@EBF2!0.78!4.97!EBF2;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!14.19!ARNTL2;;chr8:72756063..72756125,-!p1@MSC!0.76!10.29!MSC;;chr12:66218212..66218244,+!p5@HMGA2!0.76!7.09!HMGA2;;chr19:13106214..13106382,+!p1@NFIX!0.75!118.46!NFIX;;chr8:99956662..99956684,+!p1@OSR2!0.75!7.45!OSR2;;chr7:27142290..27142310,-!p1@HOXA2!0.75!4.61!HOXA2;;chr1:170632310..170632321,+!p15@PRRX1!0.75!4.61!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.75!4.61!RFX8;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.70!FOXD1;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.74!BMP2;;chr7:19157043..19157088,-!p2@TWIST1!0.73!12.06!TWIST1;;chr11:61520075..61520136,+!p1@C11orf9!0.73!9.93!C11orf9;;chr9:14313893..14313908,-!p7@NFIB!0.72!6.38!NFIB;;chr19:50435736..50435781,+!p3@ATF5!0.72!6.03!ATF5;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr1:170633245..170633256,+!p14@PRRX1!0.72!4.26!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!0.72!4.26!ARNT2;;chr10:131762504..131762555,-!p1@EBF3!0.72!4.26!EBF3;;chr11:65687222..65687240,+!p7@DRAP1!0.70!5.32!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.69!100.02!AEBP1;;chr19:45260775..45260838,+!p5@BCL3!0.69!5.32!BCL3;;chr1:170632762..170632786,+!p13@PRRX1!0.69!3.90!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.69!3.90!HOXA3;;chr11:125034605..125034636,+!p2@PKNOX2!0.69!3.90!PKNOX2;;chr12:54778471..54778528,-!p1@ZNF385A!0.69!3.90!ZNF385A;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!4.97!ZFPM2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.21!GLIS2;;chr8:72756267..72756296,-!p4@MSC!0.67!5.67!MSC;;chr9:14314131..14314147,-!p2@NFIB!0.66!23.05!NFIB;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.41!IFI16;;chr17:46655704..46655718,-!p2@HOXB4!0.66!5.67!HOXB4;;chr15:67430381..67430396,+!p21@SMAD3!0.66!3.55!SMAD3;;chr16:85932760..85932775,+!p1@IRF8!0.66!3.55!IRF8;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.55!PRRX1;;chr11:47400078..47400106,-!p1@SPI1!0.66!3.55!SPI1;;chr8:106330656..106330684,+!p1@ZFPM2!0.65!10.29!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.51!HOXB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.67!ZBTB38;;chr20:42543441..42543497,+!p1@TOX2!0.64!17.38!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.09!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!0.63!35.82!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.63!20.22!RARG;;chr7:150945754..150945789,-!p2@SMARCD3!0.63!11.35!SMARCD3;;chr17:46621937..46621966,-!p2@HOXB2!0.63!9.93!HOXB2;;chr8:116681108..116681120,-!p9@TRPS1!0.63!4.26!TRPS1;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.28!DRAP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.62!5.67!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.62!3.19!TBX20;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.19!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.19!FOXC2;;chr17:46132044..46132080,+!p4@NFE2L1!0.62!3.19!NFE2L1;;chr17:59477233..59477263,+!p1@TBX2!0.61!10.99!TBX2;;chr9:14314566..14314618,-!p1@NFIB!0.60!43.62!NFIB;;chr19:31840130..31840160,-!p2@TSHZ3!0.60!4.97!TSHZ3;;chr19:13136241..13136258,+!p7@NFIX!0.60!4.26!NFIX;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.90!MEIS1;;chr5:321810..321877,+!p1@AHRR!0.59!10.64!AHRR;;chr9:110250697..110250738,-!p2@KLF4!0.59!3.55!KLF4;;chr20:42543506..42543549,+!p2@TOX2!0.58!7.80!TOX2;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.84!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.58!2.84!PRRX1;;chr6:28321971..28321995,-!p1@ZNF323!0.58!2.84!ZNF323;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.84!TBX1;;chr2:66662396..66662407,+!p4@MEIS1!0.58!2.84!MEIS1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.58!2.84!SEBOX;;chr11:125034586..125034604,+!p3@PKNOX2!0.58!2.84!PKNOX2;;chr12:66218904..66218913,+!p11@HMGA2!0.58!2.84!HMGA2;;chr5:176738887..176738934,-!p1@MXD3!0.57!22.34!MXD3;;chr19:31840313..31840380,-!p1@TSHZ3!0.57!8.16!TSHZ3;;chr1:25256756..25256774,-!p1@RUNX3!0.57!5.67!RUNX3;;chr3:168864315..168864339,-!p2@MECOM!0.57!4.97!MECOM;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.61!HOXB2;;chr11:65687243..65687276,+!p8@DRAP1!0.57!3.90!DRAP1;;chr18:53068911..53068935,-!p4@TCF4!0.57!3.19!TCF4;;chr15:37390482..37390572,-!p7@MEIS2!0.56!3.90!MEIS2;;chr17:46675420..46675465,-!p3@HOXB6!0.56!3.19!HOXB6;;chr8:37553292..37553317,+!p1@ZNF703!0.55!75.54!ZNF703;;chr6:144329384..144329405,-!p1@PLAGL1!0.55!36.89!PLAGL1;;chr3:141087339..141087387,+!p2@ZBTB38!0.55!32.63!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!0.55!12.41!ZBTB38;;chr8:22550982..22550999,-!p1@EGR3!0.55!8.51!EGR3;;chr5:158526917..158526932,-!p1@EBF1!0.55!7.45!EBF1;;chr15:96875041..96875052,+!p17@NR2F2!0.54!3.90!NR2F2;;chr15:96881221..96881240,+!p19@NR2F2!0.54!3.55!NR2F2;;chr9:16870659..16870675,-!p2@BNC2!0.54!3.19!BNC2;;chr16:88519743..88519754,+!p2@ZFPM1!0.54!2.84!ZFPM1;;chr3:21792585..21792625,-!p2@ZNF385D!0.54!2.84!ZNF385D;;chr22:41763452..41763466,+!p2@TEF!0.54!2.48!TEF;;chr2:19558327..19558334,-!p2@OSR1!0.54!2.48!OSR1;;chr17:46655672..46655697,-!p3@HOXB4!0.54!2.48!HOXB4;;chr19:13135386..13135435,+!p4@NFIX!0.54!2.48!NFIX;;chr11:32457075..32457095,-!p1@WT1!0.54!2.48!WT1;;chr11:46299443..46299459,+!p4@CREB3L1!0.54!2.48!CREB3L1;;chr11:46333979..46333991,+!p7@CREB3L1!0.54!2.48!CREB3L1;;chr11:65688877..65688891,+!p13@DRAP1!0.54!2.48!DRAP1;;chr12:66357214..66357233,+!p13@HMGA2!0.54!2.48!HMGA2;;chr5:139492456..139492489,+!p7@PURA!0.54!2.48!PURA;;chr5:158527104..158527135,-!p4@EBF1!0.54!2.48!EBF1;;chr5:2751762..2751784,-!p1@IRX2!0.54!2.48!IRX2;;chr8:72756380..72756427,-!p8@MSC!0.54!2.48!MSC;;chr1:158979922..158979933,+!p13@IFI16!0.54!2.48!IFI16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.48!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.54!2.48!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.54!2.48!PRRX1;;chr1:164528410..164528428,+!p1@PBX1!0.53!22.70!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!0.53!13.48!MEIS2;;chr3:71007886..71007887,-!p8@FOXP1!0.53!9.58!FOXP1;;chr9:14083467..14083483,-!p4@NFIB!0.53!7.09!NFIB;;chr8:116681123..116681143,-!p4@TRPS1!0.53!5.32!TRPS1;;chr7:44143978..44143989,+!p2@AEBP1!0.53!4.97!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.53!4.97!NR2F2;;chr8:72756023..72756055,-!p6@MSC!0.53!3.19!MSC;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.63!NR2F2;;chr6:19837592..19837621,+!p1@ID4!0.52!18.09!ID4;;chr12:27485823..27485868,+!p2@ARNTL2!0.52!11.70!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.93!FOXP1;;chr1:164528445..164528459,+!p2@PBX1!0.52!8.87!PBX1;;chr12:53625966..53626012,-!p2@RARG!0.52!7.45!RARG;;chr14:24837368..24837401,+!p1@NFATC4!0.52!6.38!NFATC4;;chr11:65667846..65667868,-!p1@FOSL1!0.51!78.03!FOSL1;;chr8:49833948..49833973,-!p2@SNAI2!0.51!18.44!SNAI2;;chr12:2986206..2986258,-!p2@FOXM1!0.51!17.38!FOXM1;;chr15:96874145..96874166,+!p7@NR2F2!0.51!4.97!NR2F2;;chr18:51750414..51750449,-!p5@MBD2!0.51!4.97!MBD2;;chr1:164528588..164528610,+!p8@PBX1!0.51!3.90!PBX1;;chr15:96869292..96869320,+!p15@NR2F2!0.51!3.55!NR2F2;;chr19:13136130..13136165,+!p6@NFIX!0.51!3.19!NFIX;;chr19:18391615..18391637,-!p5@JUND!0.51!3.19!JUND;;chr4:81118647..81118666,+!p1@PRDM8!0.51!3.19!PRDM8;;chr6:34204973..34204990,+!p4@HMGA1!0.50!37.59!HMGA1;;chr9:14314522..14314556,-!p3@NFIB!0.50!6.03!NFIB;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.84!TBX18;;chr7:15726296..15726315,-!p1@MEOX2!0.50!2.13!MEOX2;;chr15:674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| |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.68!53.20!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.65!115.27!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.98!HAND2;;chr8:55370487..55370503,+!p1@SOX17!1.65!43.27!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.45!36.53!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.42!77.32!GATA6;;chr1:170633262..170633285,+!p3@PRRX1!1.37!25.89!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.37!22.34!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.57!ZBED1;;chr18:19749386..19749404,+!p2@GATA6!1.25!24.12!GATA6;;chr6:34204921..34204939,+!p3@HMGA1!1.24!482.35!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.17!70.93!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.15!17.02!PRRX2;;chr15:67430351..67430366,+!p10@SMAD3!1.15!13.12!SMAD3;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.19!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.12!31.92!HIC1;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.02!NFIX;;chr2:239756671..239756732,+!p1@TWIST2!1.08!35.47!TWIST2;;chr1:170632477..170632506,+!p6@PRRX1!1.08!10.99!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.64!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.64!TCF21;;chr2:239756739..239756755,+!p2@TWIST2!1.02!16.31!TWIST2;;chr2:68592406..68592424,+!p1@PLEK!1.02!9.58!PLEK;;chr16:86600426..86600441,+!p1@FOXC2!1.01!23.05!FOXC2;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.83!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.96!10.29!FOXF1;;chr11:46299539..46299620,+!p2@CREB3L1!0.93!13.12!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!0.93!12.77!TCF12;;chr8:72756637..72756664,-!p3@MSC!0.93!8.51!MSC;;chr9:132427883..132427951,+!p2@PRRX2!0.91!7.09!PRRX2;;chr11:65686802..65686818,+!p6@DRAP1!0.89!12.06!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!0.89!9.58!FOXF2;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.74!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.88!7.45!SMAD3;;chr19:50432453..50432468,+!p1@ATF5!0.87!376.66!ATF5;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.57!HMGA2;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.16!SMAD3;;chr19:13135582..13135600,+!p3@NFIX!0.87!6.38!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.03!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.83!16.67!TWIST1;;chr18:19749517..19749531,+!p3@GATA6!0.83!10.64!GATA6;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.66!DRAP1;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.67!PRRX1;;chr4:174451350..174451363,-!p3@HAND2!0.82!5.67!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.47!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.70!FOSL1;;chr8:72756667..72756736,-!p2@MSC!0.80!8.51!MSC;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.38!MECOM;;chr3:25470156..25470227,+!p2@RARB!0.80!5.32!RARB;;chr18:19749353..19749367,+!p4@GATA6!0.80!5.32!GATA6;;chr19:47523058..47523114,+!p1@NPAS1!0.80!5.32!NPAS1;;chr5:133450365..133450444,+!p1@TCF7!0.78!24.83!TCF7;;chr8:77593474..77593612,+!p1@ZFHX4!0.78!23.05!ZFHX4;;chr8:25902876..25902936,-!p1@EBF2!0.78!4.97!EBF2;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!14.19!ARNTL2;;chr8:72756063..72756125,-!p1@MSC!0.76!10.29!MSC;;chr12:66218212..66218244,+!p5@HMGA2!0.76!7.09!HMGA2;;chr19:13106214..13106382,+!p1@NFIX!0.75!118.46!NFIX;;chr8:99956662..99956684,+!p1@OSR2!0.75!7.45!OSR2;;chr7:27142290..27142310,-!p1@HOXA2!0.75!4.61!HOXA2;;chr1:170632310..170632321,+!p15@PRRX1!0.75!4.61!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.75!4.61!RFX8;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.70!FOXD1;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.74!BMP2;;chr7:19157043..19157088,-!p2@TWIST1!0.73!12.06!TWIST1;;chr11:61520075..61520136,+!p1@C11orf9!0.73!9.93!C11orf9;;chr9:14313893..14313908,-!p7@NFIB!0.72!6.38!NFIB;;chr19:50435736..50435781,+!p3@ATF5!0.72!6.03!ATF5;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr1:170633245..170633256,+!p14@PRRX1!0.72!4.26!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!0.72!4.26!ARNT2;;chr10:131762504..131762555,-!p1@EBF3!0.72!4.26!EBF3;;chr11:65687222..65687240,+!p7@DRAP1!0.70!5.32!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.69!100.02!AEBP1;;chr19:45260775..45260838,+!p5@BCL3!0.69!5.32!BCL3;;chr1:170632762..170632786,+!p13@PRRX1!0.69!3.90!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.69!3.90!HOXA3;;chr11:125034605..125034636,+!p2@PKNOX2!0.69!3.90!PKNOX2;;chr12:54778471..54778528,-!p1@ZNF385A!0.69!3.90!ZNF385A;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!4.97!ZFPM2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.21!GLIS2;;chr8:72756267..72756296,-!p4@MSC!0.67!5.67!MSC;;chr9:14314131..14314147,-!p2@NFIB!0.66!23.05!NFIB;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.41!IFI16;;chr17:46655704..46655718,-!p2@HOXB4!0.66!5.67!HOXB4;;chr15:67430381..67430396,+!p21@SMAD3!0.66!3.55!SMAD3;;chr16:85932760..85932775,+!p1@IRF8!0.66!3.55!IRF8;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.55!PRRX1;;chr11:47400078..47400106,-!p1@SPI1!0.66!3.55!SPI1;;chr8:106330656..106330684,+!p1@ZFPM2!0.65!10.29!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.51!HOXB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.67!ZBTB38;;chr20:42543441..42543497,+!p1@TOX2!0.64!17.38!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.09!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!0.63!35.82!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.63!20.22!RARG;;chr7:150945754..150945789,-!p2@SMARCD3!0.63!11.35!SMARCD3;;chr17:46621937..46621966,-!p2@HOXB2!0.63!9.93!HOXB2;;chr8:116681108..116681120,-!p9@TRPS1!0.63!4.26!TRPS1;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.28!DRAP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.62!5.67!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.62!3.19!TBX20;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.19!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.19!FOXC2;;chr17:46132044..46132080,+!p4@NFE2L1!0.62!3.19!NFE2L1;;chr17:59477233..59477263,+!p1@TBX2!0.61!10.99!TBX2;;chr9:14314566..14314618,-!p1@NFIB!0.60!43.62!NFIB;;chr19:31840130..31840160,-!p2@TSHZ3!0.60!4.97!TSHZ3;;chr19:13136241..13136258,+!p7@NFIX!0.60!4.26!NFIX;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.90!MEIS1;;chr5:321810..321877,+!p1@AHRR!0.59!10.64!AHRR;;chr9:110250697..110250738,-!p2@KLF4!0.59!3.55!KLF4;;chr20:42543506..42543549,+!p2@TOX2!0.58!7.80!TOX2;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.84!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.58!2.84!PRRX1;;chr6:28321971..28321995,-!p1@ZNF323!0.58!2.84!ZNF323;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.84!TBX1;;chr2:66662396..66662407,+!p4@MEIS1!0.58!2.84!MEIS1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.58!2.84!SEBOX;;chr11:125034586..125034604,+!p3@PKNOX2!0.58!2.84!PKNOX2;;chr12:66218904..66218913,+!p11@HMGA2!0.58!2.84!HMGA2;;chr5:176738887..176738934,-!p1@MXD3!0.57!22.34!MXD3;;chr19:31840313..31840380,-!p1@TSHZ3!0.57!8.16!TSHZ3;;chr1:25256756..25256774,-!p1@RUNX3!0.57!5.67!RUNX3;;chr3:168864315..168864339,-!p2@MECOM!0.57!4.97!MECOM;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.61!HOXB2;;chr11:65687243..65687276,+!p8@DRAP1!0.57!3.90!DRAP1;;chr18:53068911..53068935,-!p4@TCF4!0.57!3.19!TCF4;;chr15:37390482..37390572,-!p7@MEIS2!0.56!3.90!MEIS2;;chr17:46675420..46675465,-!p3@HOXB6!0.56!3.19!HOXB6;;chr8:37553292..37553317,+!p1@ZNF703!0.55!75.54!ZNF703;;chr6:144329384..144329405,-!p1@PLAGL1!0.55!36.89!PLAGL1;;chr3:141087339..141087387,+!p2@ZBTB38!0.55!32.63!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!0.55!12.41!ZBTB38;;chr8:22550982..22550999,-!p1@EGR3!0.55!8.51!EGR3;;chr5:158526917..158526932,-!p1@EBF1!0.55!7.45!EBF1;;chr15:96875041..96875052,+!p17@NR2F2!0.54!3.90!NR2F2;;chr15:96881221..96881240,+!p19@NR2F2!0.54!3.55!NR2F2;;chr9:16870659..16870675,-!p2@BNC2!0.54!3.19!BNC2;;chr16:88519743..88519754,+!p2@ZFPM1!0.54!2.84!ZFPM1;;chr3:21792585..21792625,-!p2@ZNF385D!0.54!2.84!ZNF385D;;chr22:41763452..41763466,+!p2@TEF!0.54!2.48!TEF;;chr2:19558327..19558334,-!p2@OSR1!0.54!2.48!OSR1;;chr17:46655672..46655697,-!p3@HOXB4!0.54!2.48!HOXB4;;chr19:13135386..13135435,+!p4@NFIX!0.54!2.48!NFIX;;chr11:32457075..32457095,-!p1@WT1!0.54!2.48!WT1;;chr11:46299443..46299459,+!p4@CREB3L1!0.54!2.48!CREB3L1;;chr11:46333979..46333991,+!p7@CREB3L1!0.54!2.48!CREB3L1;;chr11:65688877..65688891,+!p13@DRAP1!0.54!2.48!DRAP1;;chr12:66357214..66357233,+!p13@HMGA2!0.54!2.48!HMGA2;;chr5:139492456..139492489,+!p7@PURA!0.54!2.48!PURA;;chr5:158527104..158527135,-!p4@EBF1!0.54!2.48!EBF1;;chr5:2751762..2751784,-!p1@IRX2!0.54!2.48!IRX2;;chr8:72756380..72756427,-!p8@MSC!0.54!2.48!MSC;;chr1:158979922..158979933,+!p13@IFI16!0.54!2.48!IFI16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.48!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.54!2.48!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.54!2.48!PRRX1;;chr1:164528410..164528428,+!p1@PBX1!0.53!22.70!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!0.53!13.48!MEIS2;;chr3:71007886..71007887,-!p8@FOXP1!0.53!9.58!FOXP1;;chr9:14083467..14083483,-!p4@NFIB!0.53!7.09!NFIB;;chr8:116681123..116681143,-!p4@TRPS1!0.53!5.32!TRPS1;;chr7:44143978..44143989,+!p2@AEBP1!0.53!4.97!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.53!4.97!NR2F2;;chr8:72756023..72756055,-!p6@MSC!0.53!3.19!MSC;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.63!NR2F2;;chr6:19837592..19837621,+!p1@ID4!0.52!18.09!ID4;;chr12:27485823..27485868,+!p2@ARNTL2!0.52!11.70!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.93!FOXP1;;chr1:164528445..164528459,+!p2@PBX1!0.52!8.87!PBX1;;chr12:53625966..53626012,-!p2@RARG!0.52!7.45!RARG;;chr14:24837368..24837401,+!p1@NFATC4!0.52!6.38!NFATC4;;chr11:65667846..65667868,-!p1@FOSL1!0.51!78.03!FOSL1;;chr8:49833948..49833973,-!p2@SNAI2!0.51!18.44!SNAI2;;chr12:2986206..2986258,-!p2@FOXM1!0.51!17.38!FOXM1;;chr15:96874145..96874166,+!p7@NR2F2!0.51!4.97!NR2F2;;chr18:51750414..51750449,-!p5@MBD2!0.51!4.97!MBD2;;chr1:164528588..164528610,+!p8@PBX1!0.51!3.90!PBX1;;chr15:96869292..96869320,+!p15@NR2F2!0.51!3.55!NR2F2;;chr19:13136130..13136165,+!p6@NFIX!0.51!3.19!NFIX;;chr19:18391615..18391637,-!p5@JUND!0.51!3.19!JUND;;chr4:81118647..81118666,+!p1@PRDM8!0.51!3.19!PRDM8;;chr6:34204973..34204990,+!p4@HMGA1!0.50!37.59!HMGA1;;chr9:14314522..14314556,-!p3@NFIB!0.50!6.03!NFIB;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.84!TBX18;;chr7:15726296..15726315,-!p1@MEOX2!0.50!2.13!MEOX2;;chr15:674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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002547;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11401-118D6 | |id=FF:11401-118D6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000058 | ||
|is_obsolete= | |||
|library_id=CNhs12011 | |||
|library_id_phase_based=2:CNhs12011 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11401 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GGTAGC.11401 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11401 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GGTAGC.11401 | |||
|name=Fibroblast - Aortic Adventitial, donor3 | |name=Fibroblast - Aortic Adventitial, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12011,LSID837,release011,COMPLETED | |profile_hcage=CNhs12011,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118D6 | |rna_tube_id=118D6 | ||
|rna_weight_ug=41.5 | |rna_weight_ug=41.5 | ||
|rnaseq_library_id=SRhi10012.GGTAGC | |||
|sample_age=19 | |sample_age=19 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=CC-7014 | |sample_cell_catalog=CC-7014 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=ALX4:1.76784183285;NKX3-1:1.64627728544;GLI1..3:1.58939452208;GATA4:1.480444519;UFEwm:1.46573563952;TAL1_TCF{3,4,12}:1.34530519322;ZNF384:1.25878429931;HOX{A5,B5}:1.22912919253;XBP1:1.22132964226;KLF4:1.21220607913;HMX1:1.16651451173;TBP:1.13698768677;ZIC1..3:1.11255891008;GCM1,2:1.08614415223;EN1,2:1.06923880186;IKZF1:0.934708605027;TLX1..3_NFIC{dimer}:0.90869568159;TEAD1:0.869463268387;PAX1,9:0.834180648185;MYBL2:0.8300844319;EBF1:0.823136741362;POU5F1:0.801364523263;ESR1:0.752033354425;PRDM1:0.736960271657;HSF1,2:0.720625276125;HOX{A4,D4}:0.710100209065;ZNF423:0.668914098572;TFAP4:0.668663824241;GTF2A1,2:0.66028224098;NR3C1:0.63332223547;CDC5L:0.616707473445;PATZ1:0.610393751221;SRF:0.609140959599;AIRE:0.584258867412;GFI1B:0.577213594405;NANOG{mouse}:0.555763928878;XCPE1{core}:0.555565024153;MTE{core}:0.547807676403;HMGA1,2:0.537563101098;GZF1:0.534993760817;PAX4:0.530715843502;SMAD1..7,9:0.527480592472;NFATC1..3:0.524708431854;HIC1:0.490526004765;ZNF148:0.483404503233;GTF2I:0.449095464667;ZBTB6:0.448353535839;RXR{A,B,G}:0.437260341851;NFE2L2:0.428816963456;TFAP2B:0.425941102557;HES1:0.410649298765;GFI1:0.406801218465;MAFB:0.396914015091;E2F1..5:0.390977022924;NKX2-2,8:0.390945094602;SPZ1:0.37748826859;MAZ:0.365366461679;TOPORS:0.360765141114;TFCP2:0.335258865653;HAND1,2:0.319808128081;RREB1:0.309378424361;TFDP1:0.306997095706;FOXO1,3,4:0.293006597244;HLF:0.269074278616;TFAP2{A,C}:0.249516939815;PAX5:0.233961554356;NFE2L1:0.230313854282;MZF1:0.228295497779;RXRA_VDR{dimer}:0.220805029781;ATF6:0.215134828683;MYB:0.208924252474;SOX17:0.201404748062;LHX3,4:0.19314525935;EGR1..3:0.188474567222;NR1H4:0.186128235722;TP53:0.162851716606;MYFfamily:0.161476628864;ZNF238:0.155557018068;BACH2:0.129722406595;NKX2-1,4:0.128887127101;MTF1:0.120418492315;FOXL1:0.119443050202;ZBTB16:0.116421678666;POU3F1..4:0.114454962815;POU1F1:0.105634418831;IRF1,2:0.0919714512684;RUNX1..3:0.0656251540515;NFY{A,B,C}:0.0473665697946;PPARG:0.0418930123945;FOS_FOS{B,L1}_JUN{B,D}:0.0347479790127;SOX{8,9,10}:0.0306031577386;TBX4,5:0.0268046154073;EVI1:0.025566894973;bHLH_family:0.010691267968;CEBPA,B_DDIT3:0.0025654578543;PAX8:0.00112843865089;SP1:-0.0127161056016;IRF7:-0.0147909566569;FOSL2:-0.0227541226248;STAT2,4,6:-0.0329253794815;ALX1:-0.0367150361958;STAT5{A,B}:-0.0378086824085;EP300:-0.050623503665;TEF:-0.0516692375054;NHLH1,2:-0.0558906568423;HBP1_HMGB_SSRP1_UBTF:-0.0597112550662;NR6A1:-0.0617807764792;AHR_ARNT_ARNT2:-0.0660088726116;NKX3-2:-0.0662517402156;HIF1A:-0.0994543739834;HNF1A:-0.102377016049;ZNF143:-0.103943640846;PAX3,7:-0.108285518855;MED-1{core}:-0.110443464221;REST:-0.112676697133;ADNP_IRX_SIX_ZHX:-0.117302361947;NFE2:-0.141880547055;FOXP3:-0.145162831061;VSX1,2:-0.148315622594;CRX:-0.149084738146;ONECUT1,2:-0.150442608911;AR:-0.156088572292;HNF4A_NR2F1,2:-0.160310542229;SPI1:-0.173551694034;ZFP161:-0.179193984634;NKX6-1,2:-0.192501786277;ELK1,4_GABP{A,B1}:-0.196100536083;SOX2:-0.201249152173;DMAP1_NCOR{1,2}_SMARC:-0.212035082817;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.215114595418;FOXD3:-0.223746371491;ETS1,2:-0.226050377412;YY1:-0.227336863674;NFKB1_REL_RELA:-0.233707342156;PBX1:-0.233863322257;FOX{I1,J2}:-0.25381650999;GATA6:-0.264957930974;LEF1_TCF7_TCF7L1,2:-0.275682512179;LMO2:-0.277938361924;NFIL3:-0.278007531105;TLX2:-0.285812129734;MEF2{A,B,C,D}:-0.296159132327;SPIB:-0.302206098855;BREu{core}:-0.323323374329;NRF1:-0.333727719603;IKZF2:-0.354927812926;NR5A1,2:-0.358421629621;ELF1,2,4:-0.381761390051;ARID5B:-0.387470750145;TGIF1:-0.40107894949;POU6F1:-0.425403319857;T:-0.43550576037;RFX1:-0.45615444381;HOXA9_MEIS1:-0.46532306693;FOXM1:-0.503989297976;SREBF1,2:-0.531938557175;JUN:-0.543898771885;STAT1,3:-0.553794139109;CREB1:-0.561121533372;ATF5_CREB3:-0.580787926338;NFIX:-0.584740610245;HOX{A6,A7,B6,B7}:-0.602322422491;DBP:-0.608337402988;PAX6:-0.620868829543;PRRX1,2:-0.623527064065;PAX2:-0.637486494149;SNAI1..3:-0.648472286204;FOXA2:-0.665342373361;ATF2:-0.666922145805;SOX5:-0.669174637014;OCT4_SOX2{dimer}:-0.686256738264;ATF4:-0.706078987672;BPTF:-0.710266198285;CDX1,2,4:-0.732601009756;NKX2-3_NKX2-5:-0.799272822645;FOX{D1,D2}:-0.835613049839;FOXP1:-0.884683516751;ZEB1:-0.915731733961;POU2F1..3:-0.930730311429;ESRRA:-0.953055662837;PDX1:-0.960767481808;MYOD1:-0.964227328569;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.989597593245;FOXQ1:-1.00464197874;NANOG:-1.02149647947;PITX1..3:-1.03990224853;FOX{F1,F2,J1}:-1.04214869777;RFX2..5_RFXANK_RFXAP:-1.06011047636;RBPJ:-1.07448882411;CUX2:-1.09289831105;FOXN1:-1.2702953798;RORA:-1.27722076208 | |top_motifs=ALX4:1.76784183285;NKX3-1:1.64627728544;GLI1..3:1.58939452208;GATA4:1.480444519;UFEwm:1.46573563952;TAL1_TCF{3,4,12}:1.34530519322;ZNF384:1.25878429931;HOX{A5,B5}:1.22912919253;XBP1:1.22132964226;KLF4:1.21220607913;HMX1:1.16651451173;TBP:1.13698768677;ZIC1..3:1.11255891008;GCM1,2:1.08614415223;EN1,2:1.06923880186;IKZF1:0.934708605027;TLX1..3_NFIC{dimer}:0.90869568159;TEAD1:0.869463268387;PAX1,9:0.834180648185;MYBL2:0.8300844319;EBF1:0.823136741362;POU5F1:0.801364523263;ESR1:0.752033354425;PRDM1:0.736960271657;HSF1,2:0.720625276125;HOX{A4,D4}:0.710100209065;ZNF423:0.668914098572;TFAP4:0.668663824241;GTF2A1,2:0.66028224098;NR3C1:0.63332223547;CDC5L:0.616707473445;PATZ1:0.610393751221;SRF:0.609140959599;AIRE:0.584258867412;GFI1B:0.577213594405;NANOG{mouse}:0.555763928878;XCPE1{core}:0.555565024153;MTE{core}:0.547807676403;HMGA1,2:0.537563101098;GZF1:0.534993760817;PAX4:0.530715843502;SMAD1..7,9:0.527480592472;NFATC1..3:0.524708431854;HIC1:0.490526004765;ZNF148:0.483404503233;GTF2I:0.449095464667;ZBTB6:0.448353535839;RXR{A,B,G}:0.437260341851;NFE2L2:0.428816963456;TFAP2B:0.425941102557;HES1:0.410649298765;GFI1:0.406801218465;MAFB:0.396914015091;E2F1..5:0.390977022924;NKX2-2,8:0.390945094602;SPZ1:0.37748826859;MAZ:0.365366461679;TOPORS:0.360765141114;TFCP2:0.335258865653;HAND1,2:0.319808128081;RREB1:0.309378424361;TFDP1:0.306997095706;FOXO1,3,4:0.293006597244;HLF:0.269074278616;TFAP2{A,C}:0.249516939815;PAX5:0.233961554356;NFE2L1:0.230313854282;MZF1:0.228295497779;RXRA_VDR{dimer}:0.220805029781;ATF6:0.215134828683;MYB:0.208924252474;SOX17:0.201404748062;LHX3,4:0.19314525935;EGR1..3:0.188474567222;NR1H4:0.186128235722;TP53:0.162851716606;MYFfamily:0.161476628864;ZNF238:0.155557018068;BACH2:0.129722406595;NKX2-1,4:0.128887127101;MTF1:0.120418492315;FOXL1:0.119443050202;ZBTB16:0.116421678666;POU3F1..4:0.114454962815;POU1F1:0.105634418831;IRF1,2:0.0919714512684;RUNX1..3:0.0656251540515;NFY{A,B,C}:0.0473665697946;PPARG:0.0418930123945;FOS_FOS{B,L1}_JUN{B,D}:0.0347479790127;SOX{8,9,10}:0.0306031577386;TBX4,5:0.0268046154073;EVI1:0.025566894973;bHLH_family:0.010691267968;CEBPA,B_DDIT3:0.0025654578543;PAX8:0.00112843865089;SP1:-0.0127161056016;IRF7:-0.0147909566569;FOSL2:-0.0227541226248;STAT2,4,6:-0.0329253794815;ALX1:-0.0367150361958;STAT5{A,B}:-0.0378086824085;EP300:-0.050623503665;TEF:-0.0516692375054;NHLH1,2:-0.0558906568423;HBP1_HMGB_SSRP1_UBTF:-0.0597112550662;NR6A1:-0.0617807764792;AHR_ARNT_ARNT2:-0.0660088726116;NKX3-2:-0.0662517402156;HIF1A:-0.0994543739834;HNF1A:-0.102377016049;ZNF143:-0.103943640846;PAX3,7:-0.108285518855;MED-1{core}:-0.110443464221;REST:-0.112676697133;ADNP_IRX_SIX_ZHX:-0.117302361947;NFE2:-0.141880547055;FOXP3:-0.145162831061;VSX1,2:-0.148315622594;CRX:-0.149084738146;ONECUT1,2:-0.150442608911;AR:-0.156088572292;HNF4A_NR2F1,2:-0.160310542229;SPI1:-0.173551694034;ZFP161:-0.179193984634;NKX6-1,2:-0.192501786277;ELK1,4_GABP{A,B1}:-0.196100536083;SOX2:-0.201249152173;DMAP1_NCOR{1,2}_SMARC:-0.212035082817;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.215114595418;FOXD3:-0.223746371491;ETS1,2:-0.226050377412;YY1:-0.227336863674;NFKB1_REL_RELA:-0.233707342156;PBX1:-0.233863322257;FOX{I1,J2}:-0.25381650999;GATA6:-0.264957930974;LEF1_TCF7_TCF7L1,2:-0.275682512179;LMO2:-0.277938361924;NFIL3:-0.278007531105;TLX2:-0.285812129734;MEF2{A,B,C,D}:-0.296159132327;SPIB:-0.302206098855;BREu{core}:-0.323323374329;NRF1:-0.333727719603;IKZF2:-0.354927812926;NR5A1,2:-0.358421629621;ELF1,2,4:-0.381761390051;ARID5B:-0.387470750145;TGIF1:-0.40107894949;POU6F1:-0.425403319857;T:-0.43550576037;RFX1:-0.45615444381;HOXA9_MEIS1:-0.46532306693;FOXM1:-0.503989297976;SREBF1,2:-0.531938557175;JUN:-0.543898771885;STAT1,3:-0.553794139109;CREB1:-0.561121533372;ATF5_CREB3:-0.580787926338;NFIX:-0.584740610245;HOX{A6,A7,B6,B7}:-0.602322422491;DBP:-0.608337402988;PAX6:-0.620868829543;PRRX1,2:-0.623527064065;PAX2:-0.637486494149;SNAI1..3:-0.648472286204;FOXA2:-0.665342373361;ATF2:-0.666922145805;SOX5:-0.669174637014;OCT4_SOX2{dimer}:-0.686256738264;ATF4:-0.706078987672;BPTF:-0.710266198285;CDX1,2,4:-0.732601009756;NKX2-3_NKX2-5:-0.799272822645;FOX{D1,D2}:-0.835613049839;FOXP1:-0.884683516751;ZEB1:-0.915731733961;POU2F1..3:-0.930730311429;ESRRA:-0.953055662837;PDX1:-0.960767481808;MYOD1:-0.964227328569;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.989597593245;FOXQ1:-1.00464197874;NANOG:-1.02149647947;PITX1..3:-1.03990224853;FOX{F1,F2,J1}:-1.04214869777;RFX2..5_RFXANK_RFXAP:-1.06011047636;RBPJ:-1.07448882411;CUX2:-1.09289831105;FOXN1:-1.2702953798;RORA:-1.27722076208 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11401-118D6;search_select_hide=table117:FF:11401-118D6 | |||
}} | }} | ||
Latest revision as of 17:58, 4 June 2020
| Name: | Fibroblast - Aortic Adventitial, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12011 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12011
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12011
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.342 |
| 10 | 10 | 0.508 |
| 100 | 100 | 0.356 |
| 101 | 101 | 0.235 |
| 102 | 102 | 0.382 |
| 103 | 103 | 0.955 |
| 104 | 104 | 0.906 |
| 105 | 105 | 0.0838 |
| 106 | 106 | 0.22 |
| 107 | 107 | 0.0458 |
| 108 | 108 | 0.759 |
| 109 | 109 | 0.912 |
| 11 | 11 | 0.991 |
| 110 | 110 | 0.449 |
| 111 | 111 | 0.508 |
| 112 | 112 | 0.774 |
| 113 | 113 | 0.011 |
| 114 | 114 | 0.946 |
| 115 | 115 | 0.0184 |
| 116 | 116 | 0.0283 |
| 117 | 117 | 0.136 |
| 118 | 118 | 0.239 |
| 119 | 119 | 0.145 |
| 12 | 12 | 0.302 |
| 120 | 120 | 0.185 |
| 121 | 121 | 0.998 |
| 122 | 122 | 0.103 |
| 123 | 123 | 6.68814e-6 |
| 124 | 124 | 0.105 |
| 125 | 125 | 0.725 |
| 126 | 126 | 0.289 |
| 127 | 127 | 0.395 |
| 128 | 128 | 0.441 |
| 129 | 129 | 0.623 |
| 13 | 13 | 0.488 |
| 130 | 130 | 0.24 |
| 131 | 131 | 0.739 |
| 132 | 132 | 0.514 |
| 133 | 133 | 0.89 |
| 134 | 134 | 0.501 |
| 135 | 135 | 0.334 |
| 136 | 136 | 0.33 |
| 137 | 137 | 0.479 |
| 138 | 138 | 0.523 |
| 139 | 139 | 0.135 |
| 14 | 14 | 0.181 |
| 140 | 140 | 0.499 |
| 141 | 141 | 0.491 |
| 142 | 142 | 0.826 |
| 143 | 143 | 0.953 |
| 144 | 144 | 0.618 |
| 145 | 145 | 0.39 |
| 146 | 146 | 0.965 |
| 147 | 147 | 0.132 |
| 148 | 148 | 0.608 |
| 149 | 149 | 0.107 |
| 15 | 15 | 0.249 |
| 150 | 150 | 0.0563 |
| 151 | 151 | 0.561 |
| 152 | 152 | 0.0259 |
| 153 | 153 | 0.644 |
| 154 | 154 | 0.733 |
| 155 | 155 | 0.0319 |
| 156 | 156 | 0.189 |
| 157 | 157 | 0.278 |
| 158 | 158 | 0.00176 |
| 159 | 159 | 0.199 |
| 16 | 16 | 0.0362 |
| 160 | 160 | 0.738 |
| 161 | 161 | 0.991 |
| 162 | 162 | 0.615 |
| 163 | 163 | 0.702 |
| 164 | 164 | 0.746 |
| 165 | 165 | 0.771 |
| 166 | 166 | 0.0572 |
| 167 | 167 | 0.195 |
| 168 | 168 | 0.842 |
| 169 | 169 | 0.133 |
| 17 | 17 | 0.942 |
| 18 | 18 | 0.277 |
| 19 | 19 | 0.0345 |
| 2 | 2 | 0.207 |
| 20 | 20 | 0.239 |
| 21 | 21 | 0.051 |
| 22 | 22 | 0.315 |
| 23 | 23 | 0.38 |
| 24 | 24 | 0.519 |
| 25 | 25 | 0.236 |
| 26 | 26 | 0.375 |
| 27 | 27 | 0.532 |
| 28 | 28 | 0.264 |
| 29 | 29 | 0.812 |
| 3 | 3 | 0.907 |
| 30 | 30 | 0.249 |
| 31 | 31 | 0.691 |
| 32 | 32 | 1.74586e-13 |
| 33 | 33 | 0.886 |
| 34 | 34 | 0.633 |
| 35 | 35 | 0.196 |
| 36 | 36 | 0.025 |
| 37 | 37 | 0.746 |
| 38 | 38 | 0.477 |
| 39 | 39 | 0.223 |
| 4 | 4 | 0.564 |
| 40 | 40 | 0.18 |
| 41 | 41 | 0.111 |
| 42 | 42 | 0.338 |
| 43 | 43 | 0.66 |
| 44 | 44 | 0.0187 |
| 45 | 45 | 0.949 |
| 46 | 46 | 0.615 |
| 47 | 47 | 0.528 |
| 48 | 48 | 0.983 |
| 49 | 49 | 0.111 |
| 5 | 5 | 0.899 |
| 50 | 50 | 0.864 |
| 51 | 51 | 0.938 |
| 52 | 52 | 0.953 |
| 53 | 53 | 0.0465 |
| 54 | 54 | 0.737 |
| 55 | 55 | 0.79 |
| 56 | 56 | 0.513 |
| 57 | 57 | 0.158 |
| 58 | 58 | 0.219 |
| 59 | 59 | 0.205 |
| 6 | 6 | 0.662 |
| 60 | 60 | 0.684 |
| 61 | 61 | 0.375 |
| 62 | 62 | 0.69 |
| 63 | 63 | 0.691 |
| 64 | 64 | 0.575 |
| 65 | 65 | 0.532 |
| 66 | 66 | 0.888 |
| 67 | 67 | 0.924 |
| 68 | 68 | 0.9 |
| 69 | 69 | 0.485 |
| 7 | 7 | 0.0867 |
| 70 | 70 | 0.658 |
| 71 | 71 | 0.998 |
| 72 | 72 | 0.827 |
| 73 | 73 | 0.0557 |
| 74 | 74 | 0.0247 |
| 75 | 75 | 0.33 |
| 76 | 76 | 0.173 |
| 77 | 77 | 0.137 |
| 78 | 78 | 0.0194 |
| 79 | 79 | 0.0025 |
| 8 | 8 | 0.286 |
| 80 | 80 | 0.376 |
| 81 | 81 | 0.928 |
| 82 | 82 | 0.217 |
| 83 | 83 | 0.743 |
| 84 | 84 | 0.885 |
| 85 | 85 | 0.67 |
| 86 | 86 | 0.872 |
| 87 | 87 | 0.115 |
| 88 | 88 | 0.44 |
| 89 | 89 | 0.255 |
| 9 | 9 | 0.279 |
| 90 | 90 | 0.0805 |
| 91 | 91 | 0.784 |
| 92 | 92 | 0.31 |
| 93 | 93 | 0.483 |
| 94 | 94 | 0.555 |
| 95 | 95 | 0.394 |
| 96 | 96 | 0.677 |
| 97 | 97 | 0.624 |
| 98 | 98 | 0.0553 |
| 99 | 99 | 0.014 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12011
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000058 human fibroblast of the aortic adventitia sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000058 (human fibroblast of the aortic adventitia sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
