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{{f5samples
{{f5samples
|id=FF:11401-118D6
|DRA_sample_Accession=CAGE@SAMD00005894
|name=Fibroblast - Aortic Adventitial, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005894
|sample_id=11401
|accession_numbers=CAGE;DRX008242;DRR009114;DRZ000539;DRZ001924;DRZ011889;DRZ013274
|rna_tube_id=118D6
|accession_numbers_RNASeq=sRNA-Seq;DRX037202;DRR041568;DRZ007210
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
|rna_position=D6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
|sample_cell_lot=lot:0000099514
|sample_cell_catalog=CC-7014
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=19 years old adult
|sample_tissue=aorta
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=19
|sample_ethnicity=B
|rna_rin=10
|rna_od260/230=2.16
|rna_od260/280=2.06
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=41.5
|rna_concentration=1.9
|sample_note=
|profile_hcage=CNhs12011,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002547,CL:1000306
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000060,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000415,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000947,UBERON:0001009,UBERON:0001062,UBERON:0001637,UBERON:0001981,UBERON:0002049,UBERON:0002050,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004535,UBERON:0004537,UBERON:0004571,UBERON:0004572,UBERON:0004573,UBERON:0004663,UBERON:0004664,UBERON:0004872,UBERON:0004923,UBERON:0005423,UBERON:0005734,UBERON:0005742,UBERON:0006965,UBERON:0007240,UBERON:0007500,UBERON:0007798
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000058
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.68!53.20!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.65!115.27!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.98!HAND2;;chr8:55370487..55370503,+!p1@SOX17!1.65!43.27!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.45!36.53!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.42!77.32!GATA6;;chr1:170633262..170633285,+!p3@PRRX1!1.37!25.89!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.37!22.34!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.57!ZBED1;;chr18:19749386..19749404,+!p2@GATA6!1.25!24.12!GATA6;;chr6:34204921..34204939,+!p3@HMGA1!1.24!482.35!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.17!70.93!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.15!17.02!PRRX2;;chr15:67430351..67430366,+!p10@SMAD3!1.15!13.12!SMAD3;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.19!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.12!31.92!HIC1;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.02!NFIX;;chr2:239756671..239756732,+!p1@TWIST2!1.08!35.47!TWIST2;;chr1:170632477..170632506,+!p6@PRRX1!1.08!10.99!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.64!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.64!TCF21;;chr2:239756739..239756755,+!p2@TWIST2!1.02!16.31!TWIST2;;chr2:68592406..68592424,+!p1@PLEK!1.02!9.58!PLEK;;chr16:86600426..86600441,+!p1@FOXC2!1.01!23.05!FOXC2;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.83!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.96!10.29!FOXF1;;chr11:46299539..46299620,+!p2@CREB3L1!0.93!13.12!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!0.93!12.77!TCF12;;chr8:72756637..72756664,-!p3@MSC!0.93!8.51!MSC;;chr9:132427883..132427951,+!p2@PRRX2!0.91!7.09!PRRX2;;chr11:65686802..65686818,+!p6@DRAP1!0.89!12.06!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!0.89!9.58!FOXF2;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.74!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.88!7.45!SMAD3;;chr19:50432453..50432468,+!p1@ATF5!0.87!376.66!ATF5;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.57!HMGA2;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.16!SMAD3;;chr19:13135582..13135600,+!p3@NFIX!0.87!6.38!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.03!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.83!16.67!TWIST1;;chr18:19749517..19749531,+!p3@GATA6!0.83!10.64!GATA6;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.66!DRAP1;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.67!PRRX1;;chr4:174451350..174451363,-!p3@HAND2!0.82!5.67!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.47!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.70!FOSL1;;chr8:72756667..72756736,-!p2@MSC!0.80!8.51!MSC;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.38!MECOM;;chr3:25470156..25470227,+!p2@RARB!0.80!5.32!RARB;;chr18:19749353..19749367,+!p4@GATA6!0.80!5.32!GATA6;;chr19:47523058..47523114,+!p1@NPAS1!0.80!5.32!NPAS1;;chr5:133450365..133450444,+!p1@TCF7!0.78!24.83!TCF7;;chr8:77593474..77593612,+!p1@ZFHX4!0.78!23.05!ZFHX4;;chr8:25902876..25902936,-!p1@EBF2!0.78!4.97!EBF2;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!14.19!ARNTL2;;chr8:72756063..72756125,-!p1@MSC!0.76!10.29!MSC;;chr12:66218212..66218244,+!p5@HMGA2!0.76!7.09!HMGA2;;chr19:13106214..13106382,+!p1@NFIX!0.75!118.46!NFIX;;chr8:99956662..99956684,+!p1@OSR2!0.75!7.45!OSR2;;chr7:27142290..27142310,-!p1@HOXA2!0.75!4.61!HOXA2;;chr1:170632310..170632321,+!p15@PRRX1!0.75!4.61!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.75!4.61!RFX8;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.70!FOXD1;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.74!BMP2;;chr7:19157043..19157088,-!p2@TWIST1!0.73!12.06!TWIST1;;chr11:61520075..61520136,+!p1@C11orf9!0.73!9.93!C11orf9;;chr9:14313893..14313908,-!p7@NFIB!0.72!6.38!NFIB;;chr19:50435736..50435781,+!p3@ATF5!0.72!6.03!ATF5;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr1:170633245..170633256,+!p14@PRRX1!0.72!4.26!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!0.72!4.26!ARNT2;;chr10:131762504..131762555,-!p1@EBF3!0.72!4.26!EBF3;;chr11:65687222..65687240,+!p7@DRAP1!0.70!5.32!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.69!100.02!AEBP1;;chr19:45260775..45260838,+!p5@BCL3!0.69!5.32!BCL3;;chr1:170632762..170632786,+!p13@PRRX1!0.69!3.90!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.69!3.90!HOXA3;;chr11:125034605..125034636,+!p2@PKNOX2!0.69!3.90!PKNOX2;;chr12:54778471..54778528,-!p1@ZNF385A!0.69!3.90!ZNF385A;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!4.97!ZFPM2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.21!GLIS2;;chr8:72756267..72756296,-!p4@MSC!0.67!5.67!MSC;;chr9:14314131..14314147,-!p2@NFIB!0.66!23.05!NFIB;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.41!IFI16;;chr17:46655704..46655718,-!p2@HOXB4!0.66!5.67!HOXB4;;chr15:67430381..67430396,+!p21@SMAD3!0.66!3.55!SMAD3;;chr16:85932760..85932775,+!p1@IRF8!0.66!3.55!IRF8;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.55!PRRX1;;chr11:47400078..47400106,-!p1@SPI1!0.66!3.55!SPI1;;chr8:106330656..106330684,+!p1@ZFPM2!0.65!10.29!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.51!HOXB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.67!ZBTB38;;chr20:42543441..42543497,+!p1@TOX2!0.64!17.38!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.09!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!0.63!35.82!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.63!20.22!RARG;;chr7:150945754..150945789,-!p2@SMARCD3!0.63!11.35!SMARCD3;;chr17:46621937..46621966,-!p2@HOXB2!0.63!9.93!HOXB2;;chr8:116681108..116681120,-!p9@TRPS1!0.63!4.26!TRPS1;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.28!DRAP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.62!5.67!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.62!3.19!TBX20;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.19!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.19!FOXC2;;chr17:46132044..46132080,+!p4@NFE2L1!0.62!3.19!NFE2L1;;chr17:59477233..59477263,+!p1@TBX2!0.61!10.99!TBX2;;chr9:14314566..14314618,-!p1@NFIB!0.60!43.62!NFIB;;chr19:31840130..31840160,-!p2@TSHZ3!0.60!4.97!TSHZ3;;chr19:13136241..13136258,+!p7@NFIX!0.60!4.26!NFIX;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.90!MEIS1;;chr5:321810..321877,+!p1@AHRR!0.59!10.64!AHRR;;chr9:110250697..110250738,-!p2@KLF4!0.59!3.55!KLF4;;chr20:42543506..42543549,+!p2@TOX2!0.58!7.80!TOX2;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.84!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.58!2.84!PRRX1;;chr6:28321971..28321995,-!p1@ZNF323!0.58!2.84!ZNF323;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.84!TBX1;;chr2:66662396..66662407,+!p4@MEIS1!0.58!2.84!MEIS1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.58!2.84!SEBOX;;chr11:125034586..125034604,+!p3@PKNOX2!0.58!2.84!PKNOX2;;chr12:66218904..66218913,+!p11@HMGA2!0.58!2.84!HMGA2;;chr5:176738887..176738934,-!p1@MXD3!0.57!22.34!MXD3;;chr19:31840313..31840380,-!p1@TSHZ3!0.57!8.16!TSHZ3;;chr1:25256756..25256774,-!p1@RUNX3!0.57!5.67!RUNX3;;chr3:168864315..168864339,-!p2@MECOM!0.57!4.97!MECOM;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.61!HOXB2;;chr11:65687243..65687276,+!p8@DRAP1!0.57!3.90!DRAP1;;chr18:53068911..53068935,-!p4@TCF4!0.57!3.19!TCF4;;chr15:37390482..37390572,-!p7@MEIS2!0.56!3.90!MEIS2;;chr17:46675420..46675465,-!p3@HOXB6!0.56!3.19!HOXB6;;chr8:37553292..37553317,+!p1@ZNF703!0.55!75.54!ZNF703;;chr6:144329384..144329405,-!p1@PLAGL1!0.55!36.89!PLAGL1;;chr3:141087339..141087387,+!p2@ZBTB38!0.55!32.63!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!0.55!12.41!ZBTB38;;chr8:22550982..22550999,-!p1@EGR3!0.55!8.51!EGR3;;chr5:158526917..158526932,-!p1@EBF1!0.55!7.45!EBF1;;chr15:96875041..96875052,+!p17@NR2F2!0.54!3.90!NR2F2;;chr15:96881221..96881240,+!p19@NR2F2!0.54!3.55!NR2F2;;chr9:16870659..16870675,-!p2@BNC2!0.54!3.19!BNC2;;chr16:88519743..88519754,+!p2@ZFPM1!0.54!2.84!ZFPM1;;chr3:21792585..21792625,-!p2@ZNF385D!0.54!2.84!ZNF385D;;chr22:41763452..41763466,+!p2@TEF!0.54!2.48!TEF;;chr2:19558327..19558334,-!p2@OSR1!0.54!2.48!OSR1;;chr17:46655672..46655697,-!p3@HOXB4!0.54!2.48!HOXB4;;chr19:13135386..13135435,+!p4@NFIX!0.54!2.48!NFIX;;chr11:32457075..32457095,-!p1@WT1!0.54!2.48!WT1;;chr11:46299443..46299459,+!p4@CREB3L1!0.54!2.48!CREB3L1;;chr11:46333979..46333991,+!p7@CREB3L1!0.54!2.48!CREB3L1;;chr11:65688877..65688891,+!p13@DRAP1!0.54!2.48!DRAP1;;chr12:66357214..66357233,+!p13@HMGA2!0.54!2.48!HMGA2;;chr5:139492456..139492489,+!p7@PURA!0.54!2.48!PURA;;chr5:158527104..158527135,-!p4@EBF1!0.54!2.48!EBF1;;chr5:2751762..2751784,-!p1@IRX2!0.54!2.48!IRX2;;chr8:72756380..72756427,-!p8@MSC!0.54!2.48!MSC;;chr1:158979922..158979933,+!p13@IFI16!0.54!2.48!IFI16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.48!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.54!2.48!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.54!2.48!PRRX1;;chr1:164528410..164528428,+!p1@PBX1!0.53!22.70!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!0.53!13.48!MEIS2;;chr3:71007886..71007887,-!p8@FOXP1!0.53!9.58!FOXP1;;chr9:14083467..14083483,-!p4@NFIB!0.53!7.09!NFIB;;chr8:116681123..116681143,-!p4@TRPS1!0.53!5.32!TRPS1;;chr7:44143978..44143989,+!p2@AEBP1!0.53!4.97!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.53!4.97!NR2F2;;chr8:72756023..72756055,-!p6@MSC!0.53!3.19!MSC;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.63!NR2F2;;chr6:19837592..19837621,+!p1@ID4!0.52!18.09!ID4;;chr12:27485823..27485868,+!p2@ARNTL2!0.52!11.70!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.93!FOXP1;;chr1:164528445..164528459,+!p2@PBX1!0.52!8.87!PBX1;;chr12:53625966..53626012,-!p2@RARG!0.52!7.45!RARG;;chr14:24837368..24837401,+!p1@NFATC4!0.52!6.38!NFATC4;;chr11:65667846..65667868,-!p1@FOSL1!0.51!78.03!FOSL1;;chr8:49833948..49833973,-!p2@SNAI2!0.51!18.44!SNAI2;;chr12:2986206..2986258,-!p2@FOXM1!0.51!17.38!FOXM1;;chr15:96874145..96874166,+!p7@NR2F2!0.51!4.97!NR2F2;;chr18:51750414..51750449,-!p5@MBD2!0.51!4.97!MBD2;;chr1:164528588..164528610,+!p8@PBX1!0.51!3.90!PBX1;;chr15:96869292..96869320,+!p15@NR2F2!0.51!3.55!NR2F2;;chr19:13136130..13136165,+!p6@NFIX!0.51!3.19!NFIX;;chr19:18391615..18391637,-!p5@JUND!0.51!3.19!JUND;;chr4:81118647..81118666,+!p1@PRDM8!0.51!3.19!PRDM8;;chr6:34204973..34204990,+!p4@HMGA1!0.50!37.59!HMGA1;;chr9:14314522..14314556,-!p3@NFIB!0.50!6.03!NFIB;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.84!TBX18;;chr7:15726296..15726315,-!p1@MEOX2!0.50!2.13!MEOX2;;chr15:674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|ffid_belonging_in_development=CL:0000134
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg38.nobarcode.ctss.bed.gz
|id=FF:11401-118D6
|is_a=EFO:0002091;;FF:0000058
|is_obsolete=
|library_id=CNhs12011
|library_id_phase_based=2:CNhs12011
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11401
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GGTAGC.11401
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11401
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GGTAGC.11401
|name=Fibroblast - Aortic Adventitial, donor3
|namespace=FANTOM5
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|rna_box=118
|rna_catalog_number=N/A
|rna_concentration=1.9
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.16
|rna_od260/280=2.06
|rna_position=D6
|rna_rin=10
|rna_sample_type=total RNA
|rna_tube_id=118D6
|rna_weight_ug=41.5
|rnaseq_library_id=SRhi10012.GGTAGC
|sample_age=19
|sample_category=primary cells
|sample_cell_catalog=CC-7014
|sample_cell_line=
|sample_cell_lot=lot:0000099514
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=19 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=B
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.57701535626976e-225!GO:0005737;cytoplasm;1.20593354812956e-194!GO:0043226;organelle;3.18969634878451e-173!GO:0043229;intracellular organelle;6.8715872002724e-173!GO:0043231;intracellular membrane-bound organelle;3.42624815320437e-166!GO:0043227;membrane-bound organelle;4.57662897579723e-166!GO:0044422;organelle part;9.99607033808116e-140!GO:0044446;intracellular organelle part;3.9344059258039e-138!GO:0044444;cytoplasmic part;9.91584599937975e-134!GO:0032991;macromolecular complex;7.39601280931172e-100!GO:0005515;protein binding;6.9933855489377e-98!GO:0030529;ribonucleoprotein complex;2.03116195623459e-79!GO:0044238;primary metabolic process;4.79955803614171e-78!GO:0044237;cellular metabolic process;3.04482800264849e-77!GO:0043170;macromolecule metabolic process;3.7511853495795e-72!GO:0044428;nuclear part;1.03597150187183e-64!GO:0043233;organelle lumen;1.46293185727872e-64!GO:0031974;membrane-enclosed lumen;1.46293185727872e-64!GO:0005634;nucleus;8.7283273606022e-61!GO:0003723;RNA binding;1.1318447481648e-59!GO:0016043;cellular component organization and biogenesis;3.96096044922776e-57!GO:0005739;mitochondrion;3.66879259738879e-56!GO:0019538;protein metabolic process;4.29215536999632e-53!GO:0043234;protein complex;3.11131251305532e-52!GO:0005840;ribosome;2.25953440272978e-48!GO:0006412;translation;2.46474398636598e-48!GO:0031090;organelle membrane;2.57104246496427e-47!GO:0044260;cellular macromolecule metabolic process;5.66949420708718e-47!GO:0044267;cellular protein metabolic process;7.47294045654473e-46!GO:0003735;structural constituent of ribosome;3.2414235920561e-43!GO:0005829;cytosol;4.81099711391515e-41!GO:0033036;macromolecule localization;6.45545956887319e-41!GO:0006396;RNA processing;6.93711745068199e-41!GO:0015031;protein transport;1.18215688046645e-40!GO:0009058;biosynthetic process;3.28456500687487e-39!GO:0045184;establishment of protein localization;1.14573066488754e-38!GO:0009059;macromolecule biosynthetic process;2.45692672925029e-38!GO:0008104;protein localization;3.44485994009436e-38!GO:0044429;mitochondrial part;6.14394274700538e-38!GO:0031981;nuclear lumen;6.57574004680586e-38!GO:0043228;non-membrane-bound organelle;2.20701041813022e-37!GO:0043232;intracellular non-membrane-bound organelle;2.20701041813022e-37!GO:0033279;ribosomal subunit;2.85413378502935e-37!GO:0044249;cellular biosynthetic process;1.22219196434235e-36!GO:0031967;organelle envelope;2.01949828388254e-36!GO:0006996;organelle organization and biogenesis;3.77326188916223e-36!GO:0031975;envelope;5.01668016039554e-36!GO:0043283;biopolymer metabolic process;9.18078797243549e-36!GO:0046907;intracellular transport;9.33418221296042e-36!GO:0016071;mRNA metabolic process;1.28554814793574e-34!GO:0065003;macromolecular complex assembly;3.59810452317933e-34!GO:0008380;RNA splicing;1.61035485031556e-32!GO:0022607;cellular component assembly;1.57836123918475e-31!GO:0010467;gene expression;2.3236338697059e-30!GO:0006397;mRNA processing;1.70021051451672e-29!GO:0006886;intracellular protein transport;9.53956325551073e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.81248779013336e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.56779176737828e-27!GO:0007049;cell cycle;1.60834800371781e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.15242072730373e-26!GO:0006259;DNA metabolic process;6.71096555270491e-26!GO:0005740;mitochondrial envelope;2.09372775498688e-25!GO:0051641;cellular localization;4.91161036465159e-25!GO:0051649;establishment of cellular localization;9.94265553861428e-25!GO:0031966;mitochondrial membrane;6.86443687965355e-24!GO:0005654;nucleoplasm;1.04415184472452e-23!GO:0019866;organelle inner membrane;1.21547455150721e-23!GO:0005681;spliceosome;4.96926731147148e-23!GO:0044445;cytosolic part;7.86102459934383e-22!GO:0005743;mitochondrial inner membrane;9.65337176150118e-22!GO:0022402;cell cycle process;1.43908715784289e-21!GO:0006119;oxidative phosphorylation;3.58925494773728e-21!GO:0005783;endoplasmic reticulum;1.7806189521344e-20!GO:0000278;mitotic cell cycle;2.74355501710299e-20!GO:0015934;large ribosomal subunit;4.28909580926695e-20!GO:0012505;endomembrane system;7.93285636669139e-20!GO:0006457;protein folding;1.66349423598465e-19!GO:0048770;pigment granule;3.30965352041563e-19!GO:0042470;melanosome;3.30965352041563e-19!GO:0044451;nucleoplasm part;4.25579604820896e-19!GO:0044455;mitochondrial membrane part;4.52691969782727e-19!GO:0000166;nucleotide binding;1.00827145641503e-18!GO:0008134;transcription factor binding;3.51609139613732e-18!GO:0015935;small ribosomal subunit;4.19181652654018e-18!GO:0016462;pyrophosphatase activity;7.22524200341097e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.23227952690472e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.63121429953946e-17!GO:0017111;nucleoside-triphosphatase activity;2.8308889654809e-17!GO:0005794;Golgi apparatus;1.50854820885424e-16!GO:0022618;protein-RNA complex assembly;2.27168905858426e-16!GO:0043285;biopolymer catabolic process;3.01791189149043e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.85278901897401e-16!GO:0044432;endoplasmic reticulum part;6.13592852053024e-16!GO:0012501;programmed cell death;1.22424674095615e-15!GO:0031980;mitochondrial lumen;1.91288026002997e-15!GO:0005759;mitochondrial matrix;1.91288026002997e-15!GO:0005746;mitochondrial respiratory chain;2.02731463741309e-15!GO:0005694;chromosome;2.44524405845431e-15!GO:0006605;protein targeting;2.97336562696013e-15!GO:0006915;apoptosis;3.14711112456826e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.48935224921925e-15!GO:0044265;cellular macromolecule catabolic process;4.04793405878512e-15!GO:0048523;negative regulation of cellular process;5.16378140452443e-15!GO:0000087;M phase of mitotic cell cycle;6.3359803015862e-15!GO:0007067;mitosis;7.22084600898879e-15!GO:0009057;macromolecule catabolic process;9.30356967808647e-15!GO:0016192;vesicle-mediated transport;1.04984433513111e-14!GO:0022403;cell cycle phase;1.28899605601101e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.66740816916352e-14!GO:0005730;nucleolus;1.71273988575422e-14!GO:0030163;protein catabolic process;2.00756971205391e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.23394529657165e-14!GO:0008219;cell death;2.50016599263672e-14!GO:0016265;death;2.50016599263672e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.82329141131366e-14!GO:0003954;NADH dehydrogenase activity;2.82329141131366e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.82329141131366e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.70479148296821e-14!GO:0019941;modification-dependent protein catabolic process;3.93076173295314e-14!GO:0043632;modification-dependent macromolecule catabolic process;3.93076173295314e-14!GO:0044427;chromosomal part;4.25511569010587e-14!GO:0006512;ubiquitin cycle;5.1405283195973e-14!GO:0016874;ligase activity;6.42225059674926e-14!GO:0044257;cellular protein catabolic process;7.09293635556965e-14!GO:0005761;mitochondrial ribosome;1.18913356813577e-13!GO:0000313;organellar ribosome;1.18913356813577e-13!GO:0051186;cofactor metabolic process;1.23692996967845e-13!GO:0048193;Golgi vesicle transport;1.29439274128362e-13!GO:0032553;ribonucleotide binding;1.29873987516793e-13!GO:0032555;purine ribonucleotide binding;1.29873987516793e-13!GO:0006974;response to DNA damage stimulus;2.00066159918976e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.17007409713526e-13!GO:0008135;translation factor activity, nucleic acid binding;2.51516193954895e-13!GO:0017076;purine nucleotide binding;3.81064301290507e-13!GO:0048519;negative regulation of biological process;1.03299768700993e-12!GO:0043412;biopolymer modification;1.07240553216043e-12!GO:0003676;nucleic acid binding;1.14442494311618e-12!GO:0051726;regulation of cell cycle;1.3694921550934e-12!GO:0000074;regulation of progression through cell cycle;1.49020228759708e-12!GO:0051276;chromosome organization and biogenesis;1.53476599680025e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.56764229996326e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.63591754087965e-12!GO:0042773;ATP synthesis coupled electron transport;1.63591754087965e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.87687332662681e-12!GO:0045271;respiratory chain complex I;1.87687332662681e-12!GO:0005747;mitochondrial respiratory chain complex I;1.87687332662681e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.96121828262145e-12!GO:0000375;RNA splicing, via transesterification reactions;1.96121828262145e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.96121828262145e-12!GO:0051082;unfolded protein binding;1.99986380832993e-12!GO:0044248;cellular catabolic process;2.03288317118675e-12!GO:0005793;ER-Golgi intermediate compartment;2.75524176701236e-12!GO:0051301;cell division;3.00503783743735e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.00407452566691e-12!GO:0003712;transcription cofactor activity;5.91162556144812e-12!GO:0005635;nuclear envelope;7.69795498038916e-12!GO:0006464;protein modification process;1.46487819503863e-11!GO:0005524;ATP binding;2.91786792592935e-11!GO:0042254;ribosome biogenesis and assembly;5.58250368323891e-11!GO:0009055;electron carrier activity;7.47049853588996e-11!GO:0032559;adenyl ribonucleotide binding;7.98946463910822e-11!GO:0000279;M phase;8.0477637782089e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.94972093894555e-11!GO:0006461;protein complex assembly;1.14189532700708e-10!GO:0006260;DNA replication;1.71527685026587e-10!GO:0006913;nucleocytoplasmic transport;1.73063627812711e-10!GO:0006281;DNA repair;1.73063627812711e-10!GO:0006366;transcription from RNA polymerase II promoter;1.7347173764986e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.88524884581025e-10!GO:0006732;coenzyme metabolic process;2.00311610945959e-10!GO:0003743;translation initiation factor activity;2.01118842767656e-10!GO:0016070;RNA metabolic process;2.03724580761402e-10!GO:0009719;response to endogenous stimulus;2.39646895520364e-10!GO:0005789;endoplasmic reticulum membrane;2.65203241207261e-10!GO:0006413;translational initiation;2.78136555826393e-10!GO:0030554;adenyl nucleotide binding;2.9556549972916e-10!GO:0031965;nuclear membrane;2.99309947177061e-10!GO:0051169;nuclear transport;3.94441798753351e-10!GO:0044453;nuclear membrane part;4.42860738401055e-10!GO:0043687;post-translational protein modification;5.20922677918928e-10!GO:0006323;DNA packaging;6.58486700951874e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.89741172892988e-10!GO:0065004;protein-DNA complex assembly;9.363382175598e-10!GO:0006446;regulation of translational initiation;1.5614420530481e-09!GO:0051246;regulation of protein metabolic process;2.41683056961699e-09!GO:0009259;ribonucleotide metabolic process;2.42679873209475e-09!GO:0016604;nuclear body;2.52248262994515e-09!GO:0043067;regulation of programmed cell death;3.13415550121474e-09!GO:0008639;small protein conjugating enzyme activity;3.22774472309167e-09!GO:0042981;regulation of apoptosis;3.25428047604811e-09!GO:0005768;endosome;4.15268730233734e-09!GO:0006163;purine nucleotide metabolic process;4.94579541969131e-09!GO:0017038;protein import;6.08184700620604e-09!GO:0050794;regulation of cellular process;6.6998491986083e-09!GO:0004842;ubiquitin-protein ligase activity;6.97532565097568e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.57521617216897e-09!GO:0009150;purine ribonucleotide metabolic process;7.64646862957567e-09!GO:0005788;endoplasmic reticulum lumen;8.50108352543186e-09!GO:0000785;chromatin;9.01987278911622e-09!GO:0016887;ATPase activity;1.25858807489205e-08!GO:0008565;protein transporter activity;1.28014734165796e-08!GO:0006333;chromatin assembly or disassembly;1.36240000947775e-08!GO:0009056;catabolic process;1.43996490479169e-08!GO:0005773;vacuole;1.95282712044704e-08!GO:0019787;small conjugating protein ligase activity;2.14492020196699e-08!GO:0015630;microtubule cytoskeleton;2.26415110069098e-08!GO:0042623;ATPase activity, coupled;2.28149077086392e-08!GO:0006164;purine nucleotide biosynthetic process;3.1024976948838e-08!GO:0009260;ribonucleotide biosynthetic process;4.08615323534635e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.17519363604286e-08!GO:0015986;ATP synthesis coupled proton transport;4.70552522946861e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.70552522946861e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.70915029606537e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.27217444571011e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.67465105066938e-08!GO:0030120;vesicle coat;6.39906755292399e-08!GO:0030662;coated vesicle membrane;6.39906755292399e-08!GO:0009141;nucleoside triphosphate metabolic process;6.41550612465032e-08!GO:0019829;cation-transporting ATPase activity;7.18963185459099e-08!GO:0005643;nuclear pore;7.75673026653474e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.11235441333175e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.11235441333175e-08!GO:0009060;aerobic respiration;9.44534589511628e-08!GO:0000323;lytic vacuole;1.01038445391297e-07!GO:0005764;lysosome;1.01038445391297e-07!GO:0006334;nucleosome assembly;1.07546264882698e-07!GO:0065002;intracellular protein transport across a membrane;1.11209520931953e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.14519023699701e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.31600544378812e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.35809367180493e-07!GO:0043069;negative regulation of programmed cell death;1.43685229705778e-07!GO:0045786;negative regulation of progression through cell cycle;1.59513214741053e-07!GO:0016607;nuclear speck;1.79602196163495e-07!GO:0031324;negative regulation of cellular metabolic process;1.81947148001452e-07!GO:0046034;ATP metabolic process;1.87803407346708e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.05007938131655e-07!GO:0048475;coated membrane;2.06594068310427e-07!GO:0030117;membrane coat;2.06594068310427e-07!GO:0016881;acid-amino acid ligase activity;2.26211650029032e-07!GO:0045333;cellular respiration;2.51920672790753e-07!GO:0043066;negative regulation of apoptosis;2.62513569761752e-07!GO:0007010;cytoskeleton organization and biogenesis;2.89738633322096e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.0522745997556e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.0522745997556e-07!GO:0031252;leading edge;3.05391155590875e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.09355717178911e-07!GO:0003924;GTPase activity;3.24625521431917e-07!GO:0044431;Golgi apparatus part;3.37724537641641e-07!GO:0006364;rRNA processing;3.96824546152159e-07!GO:0031497;chromatin assembly;4.7928251536295e-07!GO:0003697;single-stranded DNA binding;4.85414603909104e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.89572607460934e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.93046628913928e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.93046628913928e-07!GO:0006399;tRNA metabolic process;5.05546262311968e-07!GO:0043566;structure-specific DNA binding;5.43895242903169e-07!GO:0048522;positive regulation of cellular process;6.62416299959625e-07!GO:0007005;mitochondrion organization and biogenesis;7.05021348253359e-07!GO:0003714;transcription corepressor activity;7.07993397666014e-07!GO:0030036;actin cytoskeleton organization and biogenesis;7.34606281870629e-07!GO:0006916;anti-apoptosis;7.46263538072216e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.780886274238e-07!GO:0051188;cofactor biosynthetic process;8.12043949427336e-07!GO:0016072;rRNA metabolic process;8.42473735087574e-07!GO:0006754;ATP biosynthetic process;8.42473735087574e-07!GO:0006753;nucleoside phosphate metabolic process;8.42473735087574e-07!GO:0009892;negative regulation of metabolic process;1.01906438041983e-06!GO:0046930;pore complex;1.06555452173382e-06!GO:0051170;nuclear import;1.0677682636679e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.25028492909359e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.25028492909359e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.25028492909359e-06!GO:0050789;regulation of biological process;1.25028492909359e-06!GO:0006793;phosphorus metabolic process;1.34427898861556e-06!GO:0006796;phosphate metabolic process;1.34427898861556e-06!GO:0006950;response to stress;1.44285152000244e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.55370079930384e-06!GO:0031988;membrane-bound vesicle;1.79813985875305e-06!GO:0006606;protein import into nucleus;1.82628716982576e-06!GO:0044440;endosomal part;1.82628716982576e-06!GO:0010008;endosome membrane;1.82628716982576e-06!GO:0006099;tricarboxylic acid cycle;1.90976929052892e-06!GO:0046356;acetyl-CoA catabolic process;1.90976929052892e-06!GO:0004386;helicase activity;1.9416946802361e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.97079762184294e-06!GO:0005819;spindle;2.13432388213985e-06!GO:0050657;nucleic acid transport;2.29853252180672e-06!GO:0051236;establishment of RNA localization;2.29853252180672e-06!GO:0050658;RNA transport;2.29853252180672e-06!GO:0005667;transcription factor complex;2.32279541979093e-06!GO:0043038;amino acid activation;2.3337901253702e-06!GO:0006418;tRNA aminoacylation for protein translation;2.3337901253702e-06!GO:0043039;tRNA aminoacylation;2.3337901253702e-06!GO:0016310;phosphorylation;2.35050840666964e-06!GO:0009117;nucleotide metabolic process;2.4358064908458e-06!GO:0006403;RNA localization;2.49475734679624e-06!GO:0005770;late endosome;2.65673721219957e-06!GO:0051187;cofactor catabolic process;2.74104109122201e-06!GO:0016491;oxidoreductase activity;3.48712175716957e-06!GO:0045259;proton-transporting ATP synthase complex;3.64388443950008e-06!GO:0051325;interphase;3.66150262981152e-06!GO:0032446;protein modification by small protein conjugation;3.83179153566791e-06!GO:0000245;spliceosome assembly;4.54281508865875e-06!GO:0009109;coenzyme catabolic process;4.62708990480516e-06!GO:0051329;interphase of mitotic cell cycle;4.99964321160669e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.08208922635567e-06!GO:0016564;transcription repressor activity;5.1688444608072e-06!GO:0016567;protein ubiquitination;5.24459500015922e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.96742812237283e-06!GO:0031982;vesicle;7.82550890712936e-06!GO:0008026;ATP-dependent helicase activity;8.07538882950541e-06!GO:0016049;cell growth;8.47065100368903e-06!GO:0008361;regulation of cell size;8.88562118578216e-06!GO:0030029;actin filament-based process;8.9464707621506e-06!GO:0006084;acetyl-CoA metabolic process;9.05911482618428e-06!GO:0000775;chromosome, pericentric region;9.44465786569869e-06!GO:0004298;threonine endopeptidase activity;1.02159934825832e-05!GO:0003713;transcription coactivator activity;1.04824753802856e-05!GO:0005813;centrosome;1.09753654349788e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.12398667141754e-05!GO:0001558;regulation of cell growth;1.1473914137089e-05!GO:0007051;spindle organization and biogenesis;1.20663015807455e-05!GO:0019899;enzyme binding;1.21856032559057e-05!GO:0006613;cotranslational protein targeting to membrane;1.24166845577766e-05!GO:0031410;cytoplasmic vesicle;1.26624473418935e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.42990373040071e-05!GO:0000151;ubiquitin ligase complex;1.50605282730157e-05!GO:0016787;hydrolase activity;1.58197293810022e-05!GO:0016853;isomerase activity;1.73144694137413e-05!GO:0016568;chromatin modification;1.88700478442683e-05!GO:0016859;cis-trans isomerase activity;1.91432897342764e-05!GO:0005762;mitochondrial large ribosomal subunit;1.9327481646212e-05!GO:0000315;organellar large ribosomal subunit;1.9327481646212e-05!GO:0006752;group transfer coenzyme metabolic process;1.96872188961531e-05!GO:0005815;microtubule organizing center;1.99817697228866e-05!GO:0000139;Golgi membrane;2.16370269107314e-05!GO:0016563;transcription activator activity;2.293467452184e-05!GO:0009108;coenzyme biosynthetic process;2.6785808287871e-05!GO:0005525;GTP binding;2.82687276717846e-05!GO:0043623;cellular protein complex assembly;3.04253916363943e-05!GO:0005798;Golgi-associated vesicle;3.11758297131801e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.33645659863925e-05!GO:0048518;positive regulation of biological process;3.34329462078162e-05!GO:0045454;cell redox homeostasis;3.34329462078162e-05!GO:0030867;rough endoplasmic reticulum membrane;3.67245872669692e-05!GO:0005905;coated pit;3.84585155186362e-05!GO:0016779;nucleotidyltransferase activity;4.10525872988739e-05!GO:0007243;protein kinase cascade;4.19959524995709e-05!GO:0016481;negative regulation of transcription;4.25302989035977e-05!GO:0005769;early endosome;4.59738746850975e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.79893649407399e-05!GO:0048468;cell development;4.94310835352912e-05!GO:0051789;response to protein stimulus;5.11479952874134e-05!GO:0006986;response to unfolded protein;5.11479952874134e-05!GO:0008654;phospholipid biosynthetic process;5.40396113811807e-05!GO:0051028;mRNA transport;5.68048064934596e-05!GO:0016740;transferase activity;5.87378866070463e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.1809193020047e-05!GO:0005048;signal sequence binding;9.10077730671113e-05!GO:0016044;membrane organization and biogenesis;9.57470997730798e-05!GO:0003724;RNA helicase activity;0.000115210193757572!GO:0032561;guanyl ribonucleotide binding;0.000122538842448178!GO:0019001;guanyl nucleotide binding;0.000122538842448178!GO:0007050;cell cycle arrest;0.000122538842448178!GO:0019867;outer membrane;0.000130068501914173!GO:0031968;organelle outer membrane;0.000131727994512609!GO:0015980;energy derivation by oxidation of organic compounds;0.000144547983226623!GO:0033116;ER-Golgi intermediate compartment membrane;0.00019335013844863!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000199695536916326!GO:0051427;hormone receptor binding;0.000238409758647658!GO:0008283;cell proliferation;0.000250436493807521!GO:0042802;identical protein binding;0.000299430828632637!GO:0043021;ribonucleoprotein binding;0.00030298741991997!GO:0005885;Arp2/3 protein complex;0.000304507818228565!GO:0006612;protein targeting to membrane;0.0003120457319595!GO:0000786;nucleosome;0.000350609612605775!GO:0000314;organellar small ribosomal subunit;0.000360020110027665!GO:0005763;mitochondrial small ribosomal subunit;0.000360020110027665!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00036190686402659!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000374371145670673!GO:0005741;mitochondrial outer membrane;0.00039429812265822!GO:0005791;rough endoplasmic reticulum;0.000402752938302902!GO:0008250;oligosaccharyl transferase complex;0.000460096902416268!GO:0003899;DNA-directed RNA polymerase activity;0.000462390492931325!GO:0008092;cytoskeletal protein binding;0.000475353575722142!GO:0035257;nuclear hormone receptor binding;0.000483640259813688!GO:0051252;regulation of RNA metabolic process;0.000500517269087243!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000528465517473171!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000572920894568985!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000573869361433139!GO:0004576;oligosaccharyl transferase activity;0.000582618485121537!GO:0065009;regulation of a molecular function;0.00061240110121397!GO:0006261;DNA-dependent DNA replication;0.000652690339279867!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000714774178363575!GO:0030663;COPI coated vesicle membrane;0.00071633004005739!GO:0030126;COPI vesicle coat;0.00071633004005739!GO:0065007;biological regulation;0.000719999279976307!GO:0000082;G1/S transition of mitotic cell cycle;0.000793929153691844!GO:0018196;peptidyl-asparagine modification;0.000845393612546574!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000845393612546574!GO:0000075;cell cycle checkpoint;0.000864002343772298!GO:0006091;generation of precursor metabolites and energy;0.000878445437277623!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00088349147210534!GO:0040008;regulation of growth;0.000935494084085678!GO:0030027;lamellipodium;0.000937885135103038!GO:0019843;rRNA binding;0.000962633555165056!GO:0051128;regulation of cellular component organization and biogenesis;0.000973679218717719!GO:0033673;negative regulation of kinase activity;0.00102765612147874!GO:0006469;negative regulation of protein kinase activity;0.00102765612147874!GO:0000776;kinetochore;0.00103898851310891!GO:0001726;ruffle;0.00104972465263207!GO:0030133;transport vesicle;0.00104972465263207!GO:0043488;regulation of mRNA stability;0.00110284229530608!GO:0043487;regulation of RNA stability;0.00110284229530608!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00112444684159878!GO:0051920;peroxiredoxin activity;0.00116078652004629!GO:0016197;endosome transport;0.00120372397362177!GO:0006839;mitochondrial transport;0.00122365502041726!GO:0003729;mRNA binding;0.00125704672286155!GO:0008186;RNA-dependent ATPase activity;0.00137830584297799!GO:0016363;nuclear matrix;0.00138738599679889!GO:0007264;small GTPase mediated signal transduction;0.00142691357646763!GO:0046474;glycerophospholipid biosynthetic process;0.00145659655854885!GO:0005874;microtubule;0.00156022386852673!GO:0005657;replication fork;0.00158000991574628!GO:0006626;protein targeting to mitochondrion;0.00169351674094718!GO:0003690;double-stranded DNA binding;0.00169912678721172!GO:0051348;negative regulation of transferase activity;0.00169912678721172!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00178392785611513!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00178392785611513!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00178392785611513!GO:0044262;cellular carbohydrate metabolic process;0.00195097219619533!GO:0043681;protein import into mitochondrion;0.00204730809403585!GO:0006414;translational elongation;0.00212493326197681!GO:0006891;intra-Golgi vesicle-mediated transport;0.00213261715605005!GO:0030118;clathrin coat;0.00216526359052278!GO:0043065;positive regulation of apoptosis;0.00216526359052278!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00218519120381668!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00238780488896457!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00243289487987316!GO:0030137;COPI-coated vesicle;0.00243289487987316!GO:0043068;positive regulation of programmed cell death;0.00263685273105372!GO:0030132;clathrin coat of coated pit;0.00273490463985466!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00279833911361803!GO:0030658;transport vesicle membrane;0.00281436398133645!GO:0008094;DNA-dependent ATPase activity;0.00285646928951887!GO:0003682;chromatin binding;0.0028933079939654!GO:0008047;enzyme activator activity;0.00293827226267996!GO:0007052;mitotic spindle organization and biogenesis;0.00298428521174309!GO:0006383;transcription from RNA polymerase III promoter;0.00305231866008785!GO:0048500;signal recognition particle;0.00317813231843362!GO:0048471;perinuclear region of cytoplasm;0.0032604481226879!GO:0051168;nuclear export;0.00327223888408882!GO:0031072;heat shock protein binding;0.0033332880572795!GO:0006402;mRNA catabolic process;0.00336806733135815!GO:0004004;ATP-dependent RNA helicase activity;0.00357262788859875!GO:0045941;positive regulation of transcription;0.00360503231157983!GO:0007088;regulation of mitosis;0.00360503231157983!GO:0009967;positive regulation of signal transduction;0.00360503231157983!GO:0048487;beta-tubulin binding;0.00372108074581656!GO:0006417;regulation of translation;0.003953908898801!GO:0009165;nucleotide biosynthetic process;0.00395627117989716!GO:0006979;response to oxidative stress;0.00399400642798405!GO:0004177;aminopeptidase activity;0.00406742702614877!GO:0007059;chromosome segregation;0.00410755770270966!GO:0000059;protein import into nucleus, docking;0.0041227182885116!GO:0045892;negative regulation of transcription, DNA-dependent;0.00413481981551826!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00414743586656504!GO:0015399;primary active transmembrane transporter activity;0.00414743586656504!GO:0008632;apoptotic program;0.00423642178419526!GO:0043433;negative regulation of transcription factor activity;0.00442283426001864!GO:0008180;signalosome;0.00446797248984975!GO:0015631;tubulin binding;0.00447333429977803!GO:0030880;RNA polymerase complex;0.0045629729874517!GO:0051087;chaperone binding;0.00457825216337661!GO:0006509;membrane protein ectodomain proteolysis;0.00462464129243982!GO:0033619;membrane protein proteolysis;0.00462464129243982!GO:0007040;lysosome organization and biogenesis;0.00462743220525993!GO:0006401;RNA catabolic process;0.00464337841185637!GO:0046489;phosphoinositide biosynthetic process;0.00464545321445898!GO:0017166;vinculin binding;0.00464545321445898!GO:0005684;U2-dependent spliceosome;0.00471791316037057!GO:0005774;vacuolar membrane;0.00473820046938276!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0048151276386066!GO:0008154;actin polymerization and/or depolymerization;0.0048946602450375!GO:0008139;nuclear localization sequence binding;0.00502884482423767!GO:0045893;positive regulation of transcription, DNA-dependent;0.00520508663278799!GO:0043284;biopolymer biosynthetic process;0.00531893132916976!GO:0008610;lipid biosynthetic process;0.00547759468970794!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00547759468970794!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00547759468970794!GO:0030176;integral to endoplasmic reticulum membrane;0.00568847728102762!GO:0007093;mitotic cell cycle checkpoint;0.0058059224304494!GO:0030521;androgen receptor signaling pathway;0.00593395008226393!GO:0045045;secretory pathway;0.00601208888265809!GO:0046483;heterocycle metabolic process;0.00629690810172693!GO:0046467;membrane lipid biosynthetic process;0.00630946073753927!GO:0030659;cytoplasmic vesicle membrane;0.00641159639900855!GO:0006352;transcription initiation;0.00643271534020077!GO:0007006;mitochondrial membrane organization and biogenesis;0.00658613633888836!GO:0045792;negative regulation of cell size;0.00662364707045747!GO:0030134;ER to Golgi transport vesicle;0.00670543800259933!GO:0046519;sphingoid metabolic process;0.00670874788964097!GO:0007033;vacuole organization and biogenesis;0.00692079830576272!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0069694321095108!GO:0045047;protein targeting to ER;0.0069694321095108!GO:0016126;sterol biosynthetic process;0.00726728715024526!GO:0016860;intramolecular oxidoreductase activity;0.0073168391451542!GO:0030041;actin filament polymerization;0.00740352257960073!GO:0006302;double-strand break repair;0.00746098578961583!GO:0030308;negative regulation of cell growth;0.00751129127042235!GO:0005637;nuclear inner membrane;0.00771768848166067!GO:0030127;COPII vesicle coat;0.00817213479228431!GO:0012507;ER to Golgi transport vesicle membrane;0.00817213479228431!GO:0030119;AP-type membrane coat adaptor complex;0.00831103819297353!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00835352870762924!GO:0031902;late endosome membrane;0.00866461179793382!GO:0030660;Golgi-associated vesicle membrane;0.00872216575950598!GO:0031901;early endosome membrane;0.00887628515176607!GO:0008312;7S RNA binding;0.00895545382800784!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00906310033341409!GO:0015992;proton transport;0.00907925780249315!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00947499894062327!GO:0000428;DNA-directed RNA polymerase complex;0.00947499894062327!GO:0006672;ceramide metabolic process;0.00957558404345941!GO:0006818;hydrogen transport;0.00990391950755872!GO:0006595;polyamine metabolic process;0.0101829482512155!GO:0044433;cytoplasmic vesicle part;0.0103405041167471!GO:0022415;viral reproductive process;0.0104171633826524!GO:0035258;steroid hormone receptor binding;0.0106565071669844!GO:0009889;regulation of biosynthetic process;0.011115723460094!GO:0051287;NAD binding;0.011115723460094!GO:0005765;lysosomal membrane;0.0112412652924354!GO:0006897;endocytosis;0.0113189393732911!GO:0010324;membrane invagination;0.0113189393732911!GO:0005862;muscle thin filament tropomyosin;0.0113218334114922!GO:0003711;transcription elongation regulator activity;0.0113849846032658!GO:0051235;maintenance of localization;0.0115286482677236!GO:0006740;NADPH regeneration;0.0115461192887473!GO:0006098;pentose-phosphate shunt;0.0115461192887473!GO:0006650;glycerophospholipid metabolic process;0.0115461192887473!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0118601070560316!GO:0007017;microtubule-based process;0.0119938330804686!GO:0032940;secretion by cell;0.0121776398721786!GO:0007242;intracellular signaling cascade;0.012240743301393!GO:0031326;regulation of cellular biosynthetic process;0.012548066257733!GO:0001516;prostaglandin biosynthetic process;0.012548066257733!GO:0046457;prostanoid biosynthetic process;0.012548066257733!GO:0005869;dynactin complex;0.012557678020677!GO:0051052;regulation of DNA metabolic process;0.01271817755937!GO:0006693;prostaglandin metabolic process;0.0128715924647418!GO:0006692;prostanoid metabolic process;0.0128715924647418!GO:0003684;damaged DNA binding;0.0128773511751116!GO:0019222;regulation of metabolic process;0.0130332403997449!GO:0016251;general RNA polymerase II transcription factor activity;0.013289115449489!GO:0005876;spindle microtubule;0.0133234085998629!GO:0044437;vacuolar part;0.0134631752384285!GO:0045936;negative regulation of phosphate metabolic process;0.0136700693865703!GO:0001527;microfibril;0.013834375069556!GO:0051101;regulation of DNA binding;0.0147509961606217!GO:0030518;steroid hormone receptor signaling pathway;0.0148316828184193!GO:0043022;ribosome binding;0.0152693271632338!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.015435868361017!GO:0030131;clathrin adaptor complex;0.015687935210129!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0157406748167415!GO:0008286;insulin receptor signaling pathway;0.0158107304446366!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0160106972992223!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0160860792001633!GO:0030125;clathrin vesicle coat;0.0161407974441778!GO:0030665;clathrin coated vesicle membrane;0.0161407974441778!GO:0003746;translation elongation factor activity;0.0161407974441778!GO:0005832;chaperonin-containing T-complex;0.0161908125482929!GO:0012506;vesicle membrane;0.0163066514953287!GO:0031589;cell-substrate adhesion;0.0163975970398387!GO:0008022;protein C-terminus binding;0.0165168345001087!GO:0005096;GTPase activator activity;0.0169068871472801!GO:0031124;mRNA 3'-end processing;0.0171704996485755!GO:0022890;inorganic cation transmembrane transporter activity;0.0171836947532399!GO:0003756;protein disulfide isomerase activity;0.0172179644007767!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0172179644007767!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0175222240511347!GO:0031529;ruffle organization and biogenesis;0.0179180444685806!GO:0006695;cholesterol biosynthetic process;0.0179180444685806!GO:0044452;nucleolar part;0.0197035729648488!GO:0016584;nucleosome positioning;0.0197452281360684!GO:0000339;RNA cap binding;0.0199300907152409!GO:0019752;carboxylic acid metabolic process;0.0203894061300814!GO:0008601;protein phosphatase type 2A regulator activity;0.0207389191969726!GO:0009112;nucleobase metabolic process;0.020933244424846!GO:0050790;regulation of catalytic activity;0.0212225147237626!GO:0000049;tRNA binding;0.0213307343739358!GO:0006082;organic acid metabolic process;0.0215081445907765!GO:0007162;negative regulation of cell adhesion;0.0217258667752834!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0217258667752834!GO:0008243;plasminogen activator activity;0.0222273262398388!GO:0007160;cell-matrix adhesion;0.0226837349009295!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0226837349009295!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0226837349009295!GO:0030384;phosphoinositide metabolic process;0.0228944954934128!GO:0006607;NLS-bearing substrate import into nucleus;0.0229586340469778!GO:0043492;ATPase activity, coupled to movement of substances;0.0232017955723569!GO:0005856;cytoskeleton;0.0237253302519766!GO:0005669;transcription factor TFIID complex;0.0238543373507757!GO:0006778;porphyrin metabolic process;0.024247252783212!GO:0033013;tetrapyrrole metabolic process;0.024247252783212!GO:0006892;post-Golgi vesicle-mediated transport;0.024337659054539!GO:0000159;protein phosphatase type 2A complex;0.024337659054539!GO:0006739;NADP metabolic process;0.0245941124035384!GO:0000792;heterochromatin;0.0245941707404861!GO:0003702;RNA polymerase II transcription factor activity;0.0249207234940694!GO:0008287;protein serine/threonine phosphatase complex;0.0254621690461516!GO:0035035;histone acetyltransferase binding;0.0254749045683939!GO:0050681;androgen receptor binding;0.0254749045683939!GO:0046822;regulation of nucleocytoplasmic transport;0.0256222495005048!GO:0004860;protein kinase inhibitor activity;0.0256222495005048!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0256222495005048!GO:0007034;vacuolar transport;0.0256508349727629!GO:0006310;DNA recombination;0.0266250279534914!GO:0031543;peptidyl-proline dioxygenase activity;0.0275634852557083!GO:0008147;structural constituent of bone;0.0277485946896005!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0280886659468991!GO:0001666;response to hypoxia;0.0286514389058303!GO:0018193;peptidyl-amino acid modification;0.0287468023155244!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0288670587419394!GO:0031625;ubiquitin protein ligase binding;0.0290419081036746!GO:0032984;macromolecular complex disassembly;0.0291369084139426!GO:0051059;NF-kappaB binding;0.029700984422249!GO:0003678;DNA helicase activity;0.029700984422249!GO:0030496;midbody;0.03005546180174!GO:0005925;focal adhesion;0.0301411818272808!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0301731343331265!GO:0015002;heme-copper terminal oxidase activity;0.0301731343331265!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0301731343331265!GO:0004129;cytochrome-c oxidase activity;0.0301731343331265!GO:0008033;tRNA processing;0.0302726433286157!GO:0016408;C-acyltransferase activity;0.0305106219769615!GO:0005100;Rho GTPase activator activity;0.03090302597948!GO:0047485;protein N-terminus binding;0.0311509102156503!GO:0009116;nucleoside metabolic process;0.0312156755857523!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0313423392175342!GO:0043624;cellular protein complex disassembly;0.0314100838963831!GO:0042326;negative regulation of phosphorylation;0.0317557276525284!GO:0000922;spindle pole;0.0321871924767873!GO:0031418;L-ascorbic acid binding;0.0321871924767873!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0321871924767873!GO:0022408;negative regulation of cell-cell adhesion;0.032562317095959!GO:0004674;protein serine/threonine kinase activity;0.0326923429586926!GO:0051270;regulation of cell motility;0.0328765849906407!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0329941742133905!GO:0033043;regulation of organelle organization and biogenesis;0.0329941742133905!GO:0016272;prefoldin complex;0.0332150540023373!GO:0042168;heme metabolic process;0.0332368077164399!GO:0050811;GABA receptor binding;0.0333989000009163!GO:0030522;intracellular receptor-mediated signaling pathway;0.0336506913208565!GO:0006354;RNA elongation;0.0337837431532398!GO:0008637;apoptotic mitochondrial changes;0.0339280384934272!GO:0032508;DNA duplex unwinding;0.0342599799110088!GO:0032392;DNA geometric change;0.0342599799110088!GO:0051098;regulation of binding;0.0342599799110088!GO:0051338;regulation of transferase activity;0.034621668815335!GO:0031272;regulation of pseudopodium formation;0.034621668815335!GO:0031269;pseudopodium formation;0.034621668815335!GO:0031344;regulation of cell projection organization and biogenesis;0.034621668815335!GO:0031268;pseudopodium organization and biogenesis;0.034621668815335!GO:0031346;positive regulation of cell projection organization and biogenesis;0.034621668815335!GO:0031274;positive regulation of pseudopodium formation;0.034621668815335!GO:0000096;sulfur amino acid metabolic process;0.034621668815335!GO:0051540;metal cluster binding;0.034621668815335!GO:0051536;iron-sulfur cluster binding;0.034621668815335!GO:0032906;transforming growth factor-beta2 production;0.0346704945755783!GO:0032909;regulation of transforming growth factor-beta2 production;0.0346704945755783!GO:0006643;membrane lipid metabolic process;0.0346704945755783!GO:0006144;purine base metabolic process;0.03467810600869!GO:0006376;mRNA splice site selection;0.0355327333319244!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0355327333319244!GO:0030100;regulation of endocytosis;0.0360442188763357!GO:0008629;induction of apoptosis by intracellular signals;0.0360442188763357!GO:0019798;procollagen-proline dioxygenase activity;0.0360685924940221!GO:0007346;regulation of progression through mitotic cell cycle;0.0360798287629794!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0360798287629794!GO:0045926;negative regulation of growth;0.0366068495736221!GO:0043241;protein complex disassembly;0.0366397102066998!GO:0051090;regulation of transcription factor activity;0.0368396366931345!GO:0030833;regulation of actin filament polymerization;0.0368396366931345!GO:0006497;protein amino acid lipidation;0.0368396366931345!GO:0043281;regulation of caspase activity;0.0368396366931345!GO:0030508;thiol-disulfide exchange intermediate activity;0.0369694399043224!GO:0005784;translocon complex;0.0369797010916426!GO:0043086;negative regulation of catalytic activity;0.0375534133677657!GO:0006289;nucleotide-excision repair;0.0376197813907747!GO:0001953;negative regulation of cell-matrix adhesion;0.0376285187770911!GO:0051539;4 iron, 4 sulfur cluster binding;0.0376430394766286!GO:0007021;tubulin folding;0.0381887284723541!GO:0032507;maintenance of cellular protein localization;0.0385937979978445!GO:0040029;regulation of gene expression, epigenetic;0.0388111646013487!GO:0005801;cis-Golgi network;0.0388753230058083!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0389734293715916!GO:0007265;Ras protein signal transduction;0.0389734293715916!GO:0019206;nucleoside kinase activity;0.0393500711440173!GO:0005586;collagen type III;0.0401554837950058!GO:0001725;stress fiber;0.0401554837950058!GO:0032432;actin filament bundle;0.0401554837950058!GO:0006917;induction of apoptosis;0.0405995147528838!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0406838824472566!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0406856960016921!GO:0042158;lipoprotein biosynthetic process;0.0408148370650005!GO:0003779;actin binding;0.0408638139348306!GO:0006984;ER-nuclear signaling pathway;0.0414716833056923!GO:0006611;protein export from nucleus;0.0418746704175477!GO:0007030;Golgi organization and biogenesis;0.0419943106390549!GO:0008538;proteasome activator activity;0.0420118984693025!GO:0009303;rRNA transcription;0.0420118984693025!GO:0006506;GPI anchor biosynthetic process;0.0425896462734069!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0427432554156374!GO:0006007;glucose catabolic process;0.0427447831650507!GO:0004287;prolyl oligopeptidase activity;0.0427447831650507!GO:0009893;positive regulation of metabolic process;0.0429540376875582!GO:0006520;amino acid metabolic process;0.0432362084225944!GO:0050662;coenzyme binding;0.0433165221646302!GO:0000209;protein polyubiquitination;0.0447072275698124!GO:0006268;DNA unwinding during replication;0.0451217077994645!GO:0006378;mRNA polyadenylation;0.0451217077994645!GO:0030032;lamellipodium biogenesis;0.0451217077994645!GO:0000910;cytokinesis;0.0463789366357529!GO:0030911;TPR domain binding;0.0464005867072153!GO:0043407;negative regulation of MAP kinase activity;0.047056564323367!GO:0031371;ubiquitin conjugating enzyme complex;0.047470228847619!GO:0015036;disulfide oxidoreductase activity;0.0475415827576421!GO:0012502;induction of programmed cell death;0.0478382919192759!GO:0006779;porphyrin biosynthetic process;0.0488897712439207!GO:0033014;tetrapyrrole biosynthetic process;0.0488897712439207!GO:0043549;regulation of kinase activity;0.0498855528903687
|sample_id=11401
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=aorta
|top_motifs=ALX4:1.76784183285;NKX3-1:1.64627728544;GLI1..3:1.58939452208;GATA4:1.480444519;UFEwm:1.46573563952;TAL1_TCF{3,4,12}:1.34530519322;ZNF384:1.25878429931;HOX{A5,B5}:1.22912919253;XBP1:1.22132964226;KLF4:1.21220607913;HMX1:1.16651451173;TBP:1.13698768677;ZIC1..3:1.11255891008;GCM1,2:1.08614415223;EN1,2:1.06923880186;IKZF1:0.934708605027;TLX1..3_NFIC{dimer}:0.90869568159;TEAD1:0.869463268387;PAX1,9:0.834180648185;MYBL2:0.8300844319;EBF1:0.823136741362;POU5F1:0.801364523263;ESR1:0.752033354425;PRDM1:0.736960271657;HSF1,2:0.720625276125;HOX{A4,D4}:0.710100209065;ZNF423:0.668914098572;TFAP4:0.668663824241;GTF2A1,2:0.66028224098;NR3C1:0.63332223547;CDC5L:0.616707473445;PATZ1:0.610393751221;SRF:0.609140959599;AIRE:0.584258867412;GFI1B:0.577213594405;NANOG{mouse}:0.555763928878;XCPE1{core}:0.555565024153;MTE{core}:0.547807676403;HMGA1,2:0.537563101098;GZF1:0.534993760817;PAX4:0.530715843502;SMAD1..7,9:0.527480592472;NFATC1..3:0.524708431854;HIC1:0.490526004765;ZNF148:0.483404503233;GTF2I:0.449095464667;ZBTB6:0.448353535839;RXR{A,B,G}:0.437260341851;NFE2L2:0.428816963456;TFAP2B:0.425941102557;HES1:0.410649298765;GFI1:0.406801218465;MAFB:0.396914015091;E2F1..5:0.390977022924;NKX2-2,8:0.390945094602;SPZ1:0.37748826859;MAZ:0.365366461679;TOPORS:0.360765141114;TFCP2:0.335258865653;HAND1,2:0.319808128081;RREB1:0.309378424361;TFDP1:0.306997095706;FOXO1,3,4:0.293006597244;HLF:0.269074278616;TFAP2{A,C}:0.249516939815;PAX5:0.233961554356;NFE2L1:0.230313854282;MZF1:0.228295497779;RXRA_VDR{dimer}:0.220805029781;ATF6:0.215134828683;MYB:0.208924252474;SOX17:0.201404748062;LHX3,4:0.19314525935;EGR1..3:0.188474567222;NR1H4:0.186128235722;TP53:0.162851716606;MYFfamily:0.161476628864;ZNF238:0.155557018068;BACH2:0.129722406595;NKX2-1,4:0.128887127101;MTF1:0.120418492315;FOXL1:0.119443050202;ZBTB16:0.116421678666;POU3F1..4:0.114454962815;POU1F1:0.105634418831;IRF1,2:0.0919714512684;RUNX1..3:0.0656251540515;NFY{A,B,C}:0.0473665697946;PPARG:0.0418930123945;FOS_FOS{B,L1}_JUN{B,D}:0.0347479790127;SOX{8,9,10}:0.0306031577386;TBX4,5:0.0268046154073;EVI1:0.025566894973;bHLH_family:0.010691267968;CEBPA,B_DDIT3:0.0025654578543;PAX8:0.00112843865089;SP1:-0.0127161056016;IRF7:-0.0147909566569;FOSL2:-0.0227541226248;STAT2,4,6:-0.0329253794815;ALX1:-0.0367150361958;STAT5{A,B}:-0.0378086824085;EP300:-0.050623503665;TEF:-0.0516692375054;NHLH1,2:-0.0558906568423;HBP1_HMGB_SSRP1_UBTF:-0.0597112550662;NR6A1:-0.0617807764792;AHR_ARNT_ARNT2:-0.0660088726116;NKX3-2:-0.0662517402156;HIF1A:-0.0994543739834;HNF1A:-0.102377016049;ZNF143:-0.103943640846;PAX3,7:-0.108285518855;MED-1{core}:-0.110443464221;REST:-0.112676697133;ADNP_IRX_SIX_ZHX:-0.117302361947;NFE2:-0.141880547055;FOXP3:-0.145162831061;VSX1,2:-0.148315622594;CRX:-0.149084738146;ONECUT1,2:-0.150442608911;AR:-0.156088572292;HNF4A_NR2F1,2:-0.160310542229;SPI1:-0.173551694034;ZFP161:-0.179193984634;NKX6-1,2:-0.192501786277;ELK1,4_GABP{A,B1}:-0.196100536083;SOX2:-0.201249152173;DMAP1_NCOR{1,2}_SMARC:-0.212035082817;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.215114595418;FOXD3:-0.223746371491;ETS1,2:-0.226050377412;YY1:-0.227336863674;NFKB1_REL_RELA:-0.233707342156;PBX1:-0.233863322257;FOX{I1,J2}:-0.25381650999;GATA6:-0.264957930974;LEF1_TCF7_TCF7L1,2:-0.275682512179;LMO2:-0.277938361924;NFIL3:-0.278007531105;TLX2:-0.285812129734;MEF2{A,B,C,D}:-0.296159132327;SPIB:-0.302206098855;BREu{core}:-0.323323374329;NRF1:-0.333727719603;IKZF2:-0.354927812926;NR5A1,2:-0.358421629621;ELF1,2,4:-0.381761390051;ARID5B:-0.387470750145;TGIF1:-0.40107894949;POU6F1:-0.425403319857;T:-0.43550576037;RFX1:-0.45615444381;HOXA9_MEIS1:-0.46532306693;FOXM1:-0.503989297976;SREBF1,2:-0.531938557175;JUN:-0.543898771885;STAT1,3:-0.553794139109;CREB1:-0.561121533372;ATF5_CREB3:-0.580787926338;NFIX:-0.584740610245;HOX{A6,A7,B6,B7}:-0.602322422491;DBP:-0.608337402988;PAX6:-0.620868829543;PRRX1,2:-0.623527064065;PAX2:-0.637486494149;SNAI1..3:-0.648472286204;FOXA2:-0.665342373361;ATF2:-0.666922145805;SOX5:-0.669174637014;OCT4_SOX2{dimer}:-0.686256738264;ATF4:-0.706078987672;BPTF:-0.710266198285;CDX1,2,4:-0.732601009756;NKX2-3_NKX2-5:-0.799272822645;FOX{D1,D2}:-0.835613049839;FOXP1:-0.884683516751;ZEB1:-0.915731733961;POU2F1..3:-0.930730311429;ESRRA:-0.953055662837;PDX1:-0.960767481808;MYOD1:-0.964227328569;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.989597593245;FOXQ1:-1.00464197874;NANOG:-1.02149647947;PITX1..3:-1.03990224853;FOX{F1,F2,J1}:-1.04214869777;RFX2..5_RFXANK_RFXAP:-1.06011047636;RBPJ:-1.07448882411;CUX2:-1.09289831105;FOXN1:-1.2702953798;RORA:-1.27722076208
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11401-118D6;search_select_hide=table117:FF:11401-118D6
}}
}}

Latest revision as of 17:58, 4 June 2020

Name:Fibroblast - Aortic Adventitial, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12011
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage19 years old adult
sexfemale
age19
cell typefibroblast
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005894
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12011 CAGE DRX008242 DRR009114
Accession ID Hg19

Library idBAMCTSS
CNhs12011 DRZ000539 DRZ001924
Accession ID Hg38

Library idBAMCTSS
CNhs12011 DRZ011889 DRZ013274
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005894
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.GGTAGC sRNA-Seq DRX037202 DRR041568
Accession ID Hg19

Library idBAMCTSS
SRhi10012.GGTAGC DRZ007210


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.163
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.323
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0269
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.15
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.107
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0574
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.315
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0513
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.132
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.148
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.358
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0301
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0582
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.132
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.309
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.233
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.132
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.542
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.384
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.443
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.443
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.622
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0672
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.69
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12011

Jaspar motifP-value
MA0002.20.469
MA0003.10.649
MA0004.10.0777
MA0006.10.0878
MA0007.10.811
MA0009.10.968
MA0014.10.487
MA0017.10.424
MA0018.22.63157e-6
MA0019.10.618
MA0024.10.129
MA0025.10.0126
MA0027.10.857
MA0028.16.4828e-4
MA0029.10.804
MA0030.10.296
MA0031.10.0851
MA0035.20.437
MA0038.10.253
MA0039.20.13
MA0040.10.818
MA0041.10.442
MA0042.10.771
MA0043.13.84034e-6
MA0046.10.0843
MA0047.20.198
MA0048.10.105
MA0050.10.213
MA0051.10.46
MA0052.10.205
MA0055.10.936
MA0057.10.157
MA0058.10.0107
MA0059.10.264
MA0060.10.0935
MA0061.10.0938
MA0062.26.13077e-8
MA0065.20.11
MA0066.10.305
MA0067.10.00633
MA0068.10.492
MA0069.10.36
MA0070.10.637
MA0071.10.463
MA0072.10.23
MA0073.10.694
MA0074.10.183
MA0076.15.62862e-4
MA0077.10.642
MA0078.10.8
MA0079.20.879
MA0080.24.75607e-4
MA0081.10.0348
MA0083.10.0562
MA0084.10.268
MA0087.10.711
MA0088.10.256
MA0090.10.00658
MA0091.10.41
MA0092.10.389
MA0093.10.0724
MA0099.20.562
MA0100.10.706
MA0101.10.00803
MA0102.20.0601
MA0103.10.00248
MA0104.20.00268
MA0105.10.141
MA0106.10.963
MA0107.10.0329
MA0108.23.02298e-5
MA0111.10.322
MA0112.20.403
MA0113.10.603
MA0114.10.0538
MA0115.10.216
MA0116.10.718
MA0117.10.389
MA0119.10.585
MA0122.10.443
MA0124.10.0648
MA0125.10.546
MA0131.10.277
MA0135.10.927
MA0136.11.37725e-6
MA0137.20.994
MA0138.20.994
MA0139.10.634
MA0140.10.548
MA0141.10.35
MA0142.10.507
MA0143.10.79
MA0144.10.606
MA0145.10.783
MA0146.10.632
MA0147.10.0195
MA0148.10.473
MA0149.10.458
MA0150.10.201
MA0152.14.6135e-4
MA0153.10.938
MA0154.10.988
MA0155.10.123
MA0156.11.55046e-4
MA0157.10.209
MA0159.10.453
MA0160.10.0499
MA0162.10.326
MA0163.10.409
MA0164.10.853
MA0258.10.772
MA0259.10.0374



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12011

Novel motifP-value
10.342
100.508
1000.356
1010.235
1020.382
1030.955
1040.906
1050.0838
1060.22
1070.0458
1080.759
1090.912
110.991
1100.449
1110.508
1120.774
1130.011
1140.946
1150.0184
1160.0283
1170.136
1180.239
1190.145
120.302
1200.185
1210.998
1220.103
1236.68814e-6
1240.105
1250.725
1260.289
1270.395
1280.441
1290.623
130.488
1300.24
1310.739
1320.514
1330.89
1340.501
1350.334
1360.33
1370.479
1380.523
1390.135
140.181
1400.499
1410.491
1420.826
1430.953
1440.618
1450.39
1460.965
1470.132
1480.608
1490.107
150.249
1500.0563
1510.561
1520.0259
1530.644
1540.733
1550.0319
1560.189
1570.278
1580.00176
1590.199
160.0362
1600.738
1610.991
1620.615
1630.702
1640.746
1650.771
1660.0572
1670.195
1680.842
1690.133
170.942
180.277
190.0345
20.207
200.239
210.051
220.315
230.38
240.519
250.236
260.375
270.532
280.264
290.812
30.907
300.249
310.691
321.74586e-13
330.886
340.633
350.196
360.025
370.746
380.477
390.223
40.564
400.18
410.111
420.338
430.66
440.0187
450.949
460.615
470.528
480.983
490.111
50.899
500.864
510.938
520.953
530.0465
540.737
550.79
560.513
570.158
580.219
590.205
60.662
600.684
610.375
620.69
630.691
640.575
650.532
660.888
670.924
680.9
690.485
70.0867
700.658
710.998
720.827
730.0557
740.0247
750.33
760.173
770.137
780.0194
790.0025
80.286
800.376
810.928
820.217
830.743
840.885
850.67
860.872
870.115
880.44
890.255
90.279
900.0805
910.784
920.31
930.483
940.555
950.394
960.677
970.624
980.0553
990.014



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12011


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000058 (human fibroblast of the aortic adventitia sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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