FF:11422-118F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004801 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004801 | ||
|accession_numbers=CAGE;DRX008329;DRR009201;DRZ000626;DRZ002011;DRZ011976;DRZ013361 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037106;DRR041472;DRZ007114 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000088 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor3.CNhs12032.11422-118F9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11422-118F9 | |id=FF:11422-118F9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000088 | ||
|is_obsolete= | |||
|library_id=CNhs12032 | |||
|library_id_phase_based=2:CNhs12032 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11422 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTTTCG.11422 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11422 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTTTCG.11422 | |||
|name=Mammary Epithelial Cell, donor3 | |name=Mammary Epithelial Cell, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12032,LSID837,release011,COMPLETED | |profile_hcage=CNhs12032,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0.140942333732381,0.288919617078199,0.259313664145827,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70001757430708,0,0,0,0,0,0.420595006630144,0,0,0.27076958428909,0,0,0,0,0,0,0,0,0,0,0.332468362080336,0,0.379886144512542,0.199541764624646,0,0,0.403726174067952,0,0,0,0,-0.0242150211128343,0,0,0,0.140942333732381,0,0.00446440917546935,0,0.235476000837731,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.332468362080336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0231787001831135,0,0,0,0,0.154139676119822,0.093442963559426,0,0,0,0,-0.0980353512377064,0.289752603097181,0,0,0,0,0,0,0.60928073251059,0,0,0,0,0,0,0,0,0,0,-0.0259024270562704,0,0,0,0.34283159078483,0.520535224579156,0,0,0.0808592256142131,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135194513758581,0.188953219556864,0,0,0.0811006363661013,0,0.140942333732381,0,0,0,0,0,0,0,0.520283484697692,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.0080238801093416,-0.0683442610773682,0,0,0,0,0.0552118553424335,0,0.211588878286596,-0.0827201683234173,0,0.94109582114971,-0.055712496781182,0,0,0,0.409203087340912,0.361885901570489,0,0,-0.121779851751874,0.174701586561536,0,0,-0.250102247819254,0,0.233812374965001,0.410434805398592,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0660959708213455,-0.0798097213934044,-0.0304099808375785,0,0.140942333732381,0,0.0452845898611904,0,0,-0.232343822224186,0.215545735974854,-0.00477726367716646,-0.048121423486725,0,-0.302389727009913,0.0054407370232823,0.434852549185093,-0.0019995515766249,-0.147401849371139,-0.0490393858174662,0.151764552827145,0.151162769357323,-0.101981544643004,-0.0334284033940987,0.328470176878728,0.202056516507165,-0.096224049704377,0.372490975961272,0.140942333732381,0,0.140942333732381,-0.198862037965717,0,0,0.385959042683301,0.195096524538812,-0.0186438112469558,0.295767006865004,0.092699158149843,0.0402636825343929,-0.0395325284566706,0.0611164500016068,0.107829558970273,-0.0628531879117096,0,0,0.0508381617703881,0.0633172482226757,0.170786197767311,0.439220665693931,0,-0.151509099730644,0.178834614208196,0,0.074856857407249,0.230938875117599,0,0,0.339477061456353,0,0.090469600095182,0.0228818938142243,0,0,0.172722962377443,-0.292313267744602,0.0143233137300197,0,0.0256192452051175,0.0153861311931111,0.228282974740466,0,-0.277662924126413,0.316382141287396,0,-0.041246312531815,0,0.0929034805966295,-0.364193506867777,0.289067598570116,0.186885927118852,0.188732048473739,-0.082068582125474,-0.099099919239736,0.154139676119822,-0.0715015908062462,0.0231787001831135,0.244341529605049,0.112594639982308,-0.1661064765344,0.218177786190531,0.0423397906041922,-0.101221329594799,0,-0.170298341971009,0,-0.257394817151285,0,-0.026625546011363,0.207800195867648,-0.298347040848305,-0.111293495149233,0,0.180083417383733,-0.139727586123717,0.269677157844885,0.232517611846612,-0.0117851055326361,0.140942333732381,-0.150367083334639,0.277019190960004,-0.045416246824421,-0.138989456679195,0,0.039271235435951,0,0,0.0492679717919699,-0.235476037764389,0,-0.0596627318133405,0.039200437436861,-0.085663138297093,-0.115971073434934,0.247178875285564,0,0.748220866399479,0,0,0.291747853994025,-0.00430111373124356,-0.101230421060432,0.355954391023834,0.098012778699073,0.0149666281885267,0,0,-0.177527765965176,0,-0.112365100842025,0,0,0.103730744903223,0.130550762295432,0,0,0,-0.071676252914982,0,0,0,0,0,0,0,-0.568248286700943,-0.213890996484067,0,0.452207170689485,0,0.247178875285564,0,0.464923534958826,0,0,0,0,0.537360841550156,0,0.209450946403916,0.0704711668661905,0,0,0,-0.215723402553475,-0.0622942283623427,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.353798023281451,0,0.140942333732381,0,0.332326330908799,0,0,0,0,-0.0493325191956471,0,0,-0.171098595458283,0,0.126229490994727,-0.0815818795468414,0,0.0912542820585259,0.646265975084238,0.80754063761512,0,0.140942333732381,-0.261347131789888,0,0,-0.20659292780764,-0.0823702229656663,0.247178875285564,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0.140942333732381,0,0,0,0,0,0.00192029900060353,-0.0922240566585104,0,0,0,0,0,0,0,0.116836310653478,-0.328297801326472,0,0,0,0,0,0.332468362080336,0,0,-0.330483605930861,0,0,0,0,0,0.235476000837731,0,0,0,0,0.518627328291654,0,0,0.288919617078199,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.207498180425043,0,0,0,0,0,0.140942333732381,0,0.291448451065622,0,0,0,0,0.289841800358975,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0704711668661905,0,0,0,0.027440090301158,0,-0.0680443945383458,-0.112958610754238,0,0,0.072012013622253,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.420595006630144,0,0,-0.0920328098005262,0,0,0,0,0.332468362080336,0,-0.0861137536227335,0.185730373035941,0.0644311866127094,0,0,0,0.0160855943837355,0.140942333732381,0,0.0758685111737663,0,0.180401487866663,0,0,0,0,0,0,0,0,0.247178875285564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70001757430708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.566281749271713,0.0609238654637427,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0.332468362080336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447911717705113,0,0,0,0,0,0,0,0,0.332468362080336,0,0,0,0,0.284246286841282,0,0.248091729850309,0,0,0,0,0,0.247178875285564,0,0,0,0,0,0.140942333732381,0,0,0,0.247178875285564,0.226485715538348,0,0,0,0,0.199541764624646,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00643173300294062,0,0,0.545015955183469,0,0,0,0,0,0,0,0,0,0,0,0,0.27114818293021,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA830-R10a | |rna_catalog_number=CA830-R10a | ||
| Line 56: | Line 81: | ||
|rna_tube_id=118F9 | |rna_tube_id=118F9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.GTTTCG | |||
|sample_age=30 | |sample_age=30 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.98871815363241e-234!GO:0005737;cytoplasm;1.8931745101594e-204!GO:0043226;organelle;6.43962884360194e-178!GO:0043229;intracellular organelle;1.97101672164016e-177!GO:0043231;intracellular membrane-bound organelle;1.05419504115852e-166!GO:0043227;membrane-bound organelle;1.39914476427842e-166!GO:0044422;organelle part;5.30217889515973e-150!GO:0044446;intracellular organelle part;1.07473286279505e-148!GO:0044444;cytoplasmic part;1.12602491436109e-132!GO:0032991;macromolecular complex;1.35281600943504e-101!GO:0005515;protein binding;1.2174152627254e-87!GO:0030529;ribonucleoprotein complex;2.78630219327141e-80!GO:0044238;primary metabolic process;1.32012913255065e-77!GO:0044237;cellular metabolic process;1.10607741729733e-75!GO:0005739;mitochondrion;2.73930484935066e-73!GO:0043170;macromolecule metabolic process;7.00259812997505e-68!GO:0043233;organelle lumen;7.51758567112629e-68!GO:0031974;membrane-enclosed lumen;7.51758567112629e-68!GO:0044428;nuclear part;2.36850396455129e-67!GO:0005634;nucleus;5.35477575301938e-60!GO:0003723;RNA binding;2.22604203710178e-56!GO:0043234;protein complex;6.42782306960595e-54!GO:0019538;protein metabolic process;1.66152273401485e-53!GO:0016043;cellular component organization and biogenesis;2.1469743883457e-53!GO:0005840;ribosome;8.35250246294882e-53!GO:0031090;organelle membrane;5.63693093625326e-50!GO:0006412;translation;1.163078247855e-49!GO:0044429;mitochondrial part;1.44696596780524e-47!GO:0003735;structural constituent of ribosome;8.54144289197765e-47!GO:0044260;cellular macromolecule metabolic process;3.98296055741481e-46!GO:0044267;cellular protein metabolic process;4.00421035988529e-46!GO:0009058;biosynthetic process;6.46562299442218e-46!GO:0043228;non-membrane-bound organelle;6.3738868788628e-45!GO:0043232;intracellular non-membrane-bound organelle;6.3738868788628e-45!GO:0031967;organelle envelope;1.34486285974093e-44!GO:0031975;envelope;3.56421328134751e-44!GO:0044249;cellular biosynthetic process;1.52913338891727e-42!GO:0006396;RNA processing;2.40273043521941e-40!GO:0015031;protein transport;3.42650996121123e-40!GO:0005829;cytosol;1.20130246158029e-39!GO:0033279;ribosomal subunit;2.55220420064581e-39!GO:0033036;macromolecule localization;2.75207249997583e-39!GO:0031981;nuclear lumen;2.80790434145518e-39!GO:0006996;organelle organization and biogenesis;1.47207965470095e-38!GO:0009059;macromolecule biosynthetic process;1.8987569349777e-38!GO:0045184;establishment of protein localization;4.84242990876931e-37!GO:0008104;protein localization;6.53432619099692e-37!GO:0065003;macromolecular complex assembly;1.58690882807193e-34!GO:0046907;intracellular transport;2.98556811506377e-34!GO:0043283;biopolymer metabolic process;6.96196589132131e-34!GO:0022607;cellular component assembly;6.13730298097333e-32!GO:0005740;mitochondrial envelope;1.38158332752994e-31!GO:0007049;cell cycle;5.00766380851944e-30!GO:0006259;DNA metabolic process;1.41051887104528e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.11098856094286e-29!GO:0031966;mitochondrial membrane;2.85263639467928e-29!GO:0016071;mRNA metabolic process;3.34818962150939e-29!GO:0006886;intracellular protein transport;1.17168095035795e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.64907716072188e-28!GO:0019866;organelle inner membrane;5.33771426027055e-28!GO:0008380;RNA splicing;1.76359201764006e-26!GO:0005743;mitochondrial inner membrane;3.23279734661494e-26!GO:0006397;mRNA processing;7.09103282904488e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.38518689780569e-24!GO:0010467;gene expression;1.41167824559236e-24!GO:0022402;cell cycle process;5.25902774242021e-24!GO:0044445;cytosolic part;1.21331922449324e-23!GO:0051649;establishment of cellular localization;5.69189465684727e-23!GO:0051641;cellular localization;7.67801461991368e-23!GO:0000278;mitotic cell cycle;1.00421630851254e-22!GO:0000166;nucleotide binding;4.05598181008359e-22!GO:0005654;nucleoplasm;4.76141900537416e-22!GO:0015934;large ribosomal subunit;6.9261774370727e-21!GO:0005681;spliceosome;7.14816450783994e-21!GO:0031980;mitochondrial lumen;1.20217052800772e-20!GO:0005759;mitochondrial matrix;1.20217052800772e-20!GO:0012505;endomembrane system;3.46919183935432e-20!GO:0044455;mitochondrial membrane part;4.59723098445624e-20!GO:0016874;ligase activity;6.59650998360512e-20!GO:0006119;oxidative phosphorylation;7.90427820282617e-20!GO:0015935;small ribosomal subunit;1.80216517249883e-19!GO:0016462;pyrophosphatase activity;1.82221974237952e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.69676919774503e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;3.33645424915949e-19!GO:0005730;nucleolus;3.64188620911008e-19!GO:0017111;nucleoside-triphosphatase activity;6.28635691426408e-18!GO:0048770;pigment granule;8.35793051054973e-18!GO:0042470;melanosome;8.35793051054973e-18!GO:0044451;nucleoplasm part;1.00096563695375e-17!GO:0022403;cell cycle phase;3.06894814937855e-17!GO:0032553;ribonucleotide binding;3.56571649773954e-17!GO:0032555;purine ribonucleotide binding;3.56571649773954e-17!GO:0000087;M phase of mitotic cell cycle;4.7027690440554e-17!GO:0007067;mitosis;6.73744119817958e-17!GO:0017076;purine nucleotide binding;7.90471411593807e-17!GO:0005783;endoplasmic reticulum;1.59487862262048e-16!GO:0051186;cofactor metabolic process;1.86957744877659e-16!GO:0043412;biopolymer modification;2.54439097396099e-16!GO:0006605;protein targeting;3.41599271628258e-16!GO:0006974;response to DNA damage stimulus;1.19669868251378e-15!GO:0005746;mitochondrial respiratory chain;3.07375303289562e-15!GO:0005694;chromosome;4.2778721103015e-15!GO:0022618;protein-RNA complex assembly;4.776109523791e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.18678944893999e-15!GO:0006457;protein folding;5.20095644182719e-15!GO:0000502;proteasome complex (sensu Eukaryota);6.84423996614603e-15!GO:0005524;ATP binding;8.85542314875776e-15!GO:0006464;protein modification process;9.25549229584168e-15!GO:0006512;ubiquitin cycle;9.35078000890641e-15!GO:0044265;cellular macromolecule catabolic process;9.69367410325274e-15!GO:0043285;biopolymer catabolic process;1.25497503514402e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.31485693501205e-14!GO:0032559;adenyl ribonucleotide binding;1.47934043419472e-14!GO:0044432;endoplasmic reticulum part;1.64988303402043e-14!GO:0005794;Golgi apparatus;1.82025854736235e-14!GO:0051276;chromosome organization and biogenesis;3.64294929300246e-14!GO:0000279;M phase;3.76705569861576e-14!GO:0009057;macromolecule catabolic process;3.95043152272487e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.50644093105509e-14!GO:0030554;adenyl nucleotide binding;4.56395156871836e-14!GO:0044427;chromosomal part;4.68514069873011e-14!GO:0005761;mitochondrial ribosome;7.02995884914831e-14!GO:0000313;organellar ribosome;7.02995884914831e-14!GO:0042254;ribosome biogenesis and assembly;7.12565343362746e-14!GO:0012501;programmed cell death;8.28313521749987e-14!GO:0005635;nuclear envelope;8.63373618797282e-14!GO:0008134;transcription factor binding;1.14476885765919e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.79741791721823e-13!GO:0003954;NADH dehydrogenase activity;1.79741791721823e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.79741791721823e-13!GO:0006915;apoptosis;1.90148090304287e-13!GO:0044248;cellular catabolic process;2.13147371467658e-13!GO:0000074;regulation of progression through cell cycle;2.47574300208056e-13!GO:0051726;regulation of cell cycle;2.49255580474635e-13!GO:0043687;post-translational protein modification;2.76361568383726e-13!GO:0051301;cell division;3.93682916505337e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;7.95114548905894e-13!GO:0008135;translation factor activity, nucleic acid binding;8.19452763746172e-13!GO:0006281;DNA repair;9.0751940750765e-13!GO:0006732;coenzyme metabolic process;9.22505075548205e-13!GO:0006511;ubiquitin-dependent protein catabolic process;9.38995160371338e-13!GO:0019941;modification-dependent protein catabolic process;1.14883282325002e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.14883282325002e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;1.20434324103352e-12!GO:0044257;cellular protein catabolic process;1.57704873875893e-12!GO:0006461;protein complex assembly;1.79653968061387e-12!GO:0030163;protein catabolic process;2.69185019730409e-12!GO:0031965;nuclear membrane;3.22110619989813e-12!GO:0008219;cell death;3.88520543199619e-12!GO:0016265;death;3.88520543199619e-12!GO:0006260;DNA replication;4.15842468500225e-12!GO:0006323;DNA packaging;6.87784474360007e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.08924511298422e-11!GO:0042773;ATP synthesis coupled electron transport;1.08924511298422e-11!GO:0006399;tRNA metabolic process;1.16097424789509e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.2472262071042e-11!GO:0045271;respiratory chain complex I;1.2472262071042e-11!GO:0005747;mitochondrial respiratory chain complex I;1.2472262071042e-11!GO:0044453;nuclear membrane part;1.30601140029256e-11!GO:0009719;response to endogenous stimulus;1.48523281671034e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.56182037470379e-11!GO:0000375;RNA splicing, via transesterification reactions;1.56182037470379e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.56182037470379e-11!GO:0051082;unfolded protein binding;2.23526259938657e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.47816417827859e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.15924547798968e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.08502387037489e-11!GO:0048193;Golgi vesicle transport;9.01842705795669e-11!GO:0005789;endoplasmic reticulum membrane;1.09185484327913e-10!GO:0009055;electron carrier activity;1.37075435898764e-10!GO:0006913;nucleocytoplasmic transport;1.63768974266082e-10!GO:0016192;vesicle-mediated transport;1.76851219578475e-10!GO:0048523;negative regulation of cellular process;2.44850795223743e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.49997280342269e-10!GO:0003676;nucleic acid binding;3.8697074737279e-10!GO:0051169;nuclear transport;4.45532587564858e-10!GO:0003743;translation initiation factor activity;7.03183610753705e-10!GO:0006364;rRNA processing;8.36318453649375e-10!GO:0005643;nuclear pore;9.32317560007902e-10!GO:0000785;chromatin;1.27381753629417e-09!GO:0008565;protein transporter activity;1.31443720183569e-09!GO:0008639;small protein conjugating enzyme activity;1.59514076900668e-09!GO:0016887;ATPase activity;1.70859197154492e-09!GO:0017038;protein import;1.75420481912034e-09!GO:0016072;rRNA metabolic process;1.75420481912034e-09!GO:0042623;ATPase activity, coupled;2.32757879348507e-09!GO:0006413;translational initiation;2.69156258730645e-09!GO:0048519;negative regulation of biological process;2.90098282705629e-09!GO:0004842;ubiquitin-protein ligase activity;3.03217571963451e-09!GO:0009056;catabolic process;3.26688036697309e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.34871515386285e-09!GO:0004812;aminoacyl-tRNA ligase activity;3.34871515386285e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.34871515386285e-09!GO:0016740;transferase activity;3.5490947122135e-09!GO:0051188;cofactor biosynthetic process;3.59817662431432e-09!GO:0009259;ribonucleotide metabolic process;3.63846043981201e-09!GO:0007005;mitochondrion organization and biogenesis;4.17726935058866e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.47521685223956e-09!GO:0019787;small conjugating protein ligase activity;7.08273671606148e-09!GO:0043038;amino acid activation;7.42991195576556e-09!GO:0006418;tRNA aminoacylation for protein translation;7.42991195576556e-09!GO:0043039;tRNA aminoacylation;7.42991195576556e-09!GO:0016604;nuclear body;7.5125180839515e-09!GO:0003712;transcription cofactor activity;8.07770803805257e-09!GO:0065002;intracellular protein transport across a membrane;8.20537356667687e-09!GO:0065004;protein-DNA complex assembly;1.10577824949466e-08!GO:0006163;purine nucleotide metabolic process;1.40364822738925e-08!GO:0006446;regulation of translational initiation;1.40995310418795e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.708906659937e-08!GO:0043067;regulation of programmed cell death;1.72034308808806e-08!GO:0009150;purine ribonucleotide metabolic process;2.41925036663051e-08!GO:0042981;regulation of apoptosis;2.58490656625309e-08!GO:0006333;chromatin assembly or disassembly;2.84256508526796e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.13499702813015e-08!GO:0016881;acid-amino acid ligase activity;3.17861116590664e-08!GO:0046930;pore complex;3.23541675667175e-08!GO:0015630;microtubule cytoskeleton;4.09953189564226e-08!GO:0048475;coated membrane;4.10322630306778e-08!GO:0030117;membrane coat;4.10322630306778e-08!GO:0009060;aerobic respiration;5.26715963740675e-08!GO:0009260;ribonucleotide biosynthetic process;5.46119442644185e-08!GO:0005768;endosome;5.63031424498031e-08!GO:0016779;nucleotidyltransferase activity;7.47088479463315e-08!GO:0005793;ER-Golgi intermediate compartment;8.18096453691095e-08!GO:0006164;purine nucleotide biosynthetic process;9.46330099823673e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.06091556238452e-07!GO:0009141;nucleoside triphosphate metabolic process;1.06091556238452e-07!GO:0006334;nucleosome assembly;1.21900294131071e-07!GO:0016787;hydrolase activity;1.26598469746791e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.61130605184852e-07!GO:0015986;ATP synthesis coupled proton transport;1.70951083806721e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.70951083806721e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.12628509081254e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.14950048213335e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.14950048213335e-07!GO:0030120;vesicle coat;2.26692018610783e-07!GO:0030662;coated vesicle membrane;2.26692018610783e-07!GO:0031497;chromatin assembly;2.59413400723312e-07!GO:0006366;transcription from RNA polymerase II promoter;2.65878249310052e-07!GO:0016568;chromatin modification;3.23799577903695e-07!GO:0016491;oxidoreductase activity;3.3985729498975e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.50715379767803e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.50715379767803e-07!GO:0016070;RNA metabolic process;3.58816907396174e-07!GO:0006793;phosphorus metabolic process;3.86614590053842e-07!GO:0006796;phosphate metabolic process;3.86614590053842e-07!GO:0003924;GTPase activity;3.87482031629018e-07!GO:0043069;negative regulation of programmed cell death;4.32488485418136e-07!GO:0043623;cellular protein complex assembly;4.75403128058465e-07!GO:0009108;coenzyme biosynthetic process;5.29282887549325e-07!GO:0019829;cation-transporting ATPase activity;6.14315721152529e-07!GO:0045333;cellular respiration;6.20690784303002e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.16179881256787e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.16179881256787e-07!GO:0006916;anti-apoptosis;7.71791819383057e-07!GO:0005819;spindle;8.12663033747949e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.25208319633349e-07!GO:0051246;regulation of protein metabolic process;9.18344698275647e-07!GO:0004386;helicase activity;1.02018705188064e-06!GO:0044431;Golgi apparatus part;1.05077653233112e-06!GO:0046034;ATP metabolic process;1.05466872181437e-06!GO:0043066;negative regulation of apoptosis;1.08745889757782e-06!GO:0006403;RNA localization;1.41197363219522e-06!GO:0003697;single-stranded DNA binding;1.42434946998341e-06!GO:0006099;tricarboxylic acid cycle;1.43652749939576e-06!GO:0046356;acetyl-CoA catabolic process;1.43652749939576e-06!GO:0050657;nucleic acid transport;1.46550831924679e-06!GO:0051236;establishment of RNA localization;1.46550831924679e-06!GO:0050658;RNA transport;1.46550831924679e-06!GO:0016567;protein ubiquitination;1.71855296452179e-06!GO:0006752;group transfer coenzyme metabolic process;1.71969116471553e-06!GO:0032446;protein modification by small protein conjugation;1.81234326059309e-06!GO:0009117;nucleotide metabolic process;2.01962438678724e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.42574993866153e-06!GO:0008026;ATP-dependent helicase activity;2.47836096103778e-06!GO:0016607;nuclear speck;2.67381986205236e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.71838296732393e-06!GO:0031252;leading edge;2.80486482190755e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.92156272733036e-06!GO:0006754;ATP biosynthetic process;3.08356178403133e-06!GO:0006753;nucleoside phosphate metabolic process;3.08356178403133e-06!GO:0051329;interphase of mitotic cell cycle;3.11771120587714e-06!GO:0006084;acetyl-CoA metabolic process;3.43427748406589e-06!GO:0051187;cofactor catabolic process;3.44733676673717e-06!GO:0042802;identical protein binding;3.60677566280591e-06!GO:0045259;proton-transporting ATP synthase complex;4.20166275833561e-06!GO:0051325;interphase;4.60417951363023e-06!GO:0051170;nuclear import;5.08699798146352e-06!GO:0006606;protein import into nucleus;5.59723064829117e-06!GO:0045786;negative regulation of progression through cell cycle;6.02816046589642e-06!GO:0009109;coenzyme catabolic process;6.16176698094902e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.71799056374047e-06!GO:0005762;mitochondrial large ribosomal subunit;8.48682560887797e-06!GO:0000315;organellar large ribosomal subunit;8.48682560887797e-06!GO:0016310;phosphorylation;8.97127794476726e-06!GO:0007010;cytoskeleton organization and biogenesis;1.02556905044335e-05!GO:0003899;DNA-directed RNA polymerase activity;1.18033309882779e-05!GO:0043566;structure-specific DNA binding;1.38857433947171e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.38857433947171e-05!GO:0005525;GTP binding;1.41158293554836e-05!GO:0000245;spliceosome assembly;1.47982561639795e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.66225413733623e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.70266385583113e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.83145807362921e-05!GO:0005905;coated pit;1.83785345665319e-05!GO:0031988;membrane-bound vesicle;2.30226788425352e-05!GO:0031324;negative regulation of cellular metabolic process;2.3890330517145e-05!GO:0004298;threonine endopeptidase activity;2.52676270735886e-05!GO:0005667;transcription factor complex;2.69358885559026e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.76238815939794e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.89746514046007e-05!GO:0005813;centrosome;2.92154674723749e-05!GO:0019899;enzyme binding;3.03480410476659e-05!GO:0005788;endoplasmic reticulum lumen;3.06944500578751e-05!GO:0000151;ubiquitin ligase complex;3.09101466629928e-05!GO:0051028;mRNA transport;3.78769621497638e-05!GO:0065009;regulation of a molecular function;4.00757361066605e-05!GO:0008654;phospholipid biosynthetic process;4.01226250579094e-05!GO:0048522;positive regulation of cellular process;4.55020646649807e-05!GO:0003714;transcription corepressor activity;4.6865137033736e-05!GO:0044440;endosomal part;4.86305981799496e-05!GO:0010008;endosome membrane;4.86305981799496e-05!GO:0000786;nucleosome;5.00117982585825e-05!GO:0005798;Golgi-associated vesicle;5.03553770030002e-05!GO:0016564;transcription repressor activity;5.13682133581826e-05!GO:0005815;microtubule organizing center;5.36984394941668e-05!GO:0016126;sterol biosynthetic process;5.64408275393469e-05!GO:0006261;DNA-dependent DNA replication;5.95176607266107e-05!GO:0005773;vacuole;6.05618111793742e-05!GO:0019867;outer membrane;6.3314768716603e-05!GO:0006839;mitochondrial transport;6.8884153671647e-05!GO:0016853;isomerase activity;7.23492814073905e-05!GO:0031968;organelle outer membrane;7.70077859777883e-05!GO:0000139;Golgi membrane;8.48636936392492e-05!GO:0030118;clathrin coat;8.83822483128496e-05!GO:0051427;hormone receptor binding;9.08788981076453e-05!GO:0009892;negative regulation of metabolic process;0.000103674120217737!GO:0050794;regulation of cellular process;0.000104836510993038!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00010692985333264!GO:0048471;perinuclear region of cytoplasm;0.000108079942660436!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000127356453118836!GO:0007051;spindle organization and biogenesis;0.000136960559132005!GO:0005769;early endosome;0.000142109779528753!GO:0045454;cell redox homeostasis;0.000152180269275946!GO:0006695;cholesterol biosynthetic process;0.000157912636945677!GO:0006613;cotranslational protein targeting to membrane;0.000159517719272687!GO:0005770;late endosome;0.000167627916575666!GO:0003724;RNA helicase activity;0.000168179338653572!GO:0030036;actin cytoskeleton organization and biogenesis;0.000174346182558441!GO:0005741;mitochondrial outer membrane;0.000178061219218688!GO:0007088;regulation of mitosis;0.000187869688578213!GO:0032561;guanyl ribonucleotide binding;0.000187869688578213!GO:0019001;guanyl nucleotide binding;0.000187869688578213!GO:0035257;nuclear hormone receptor binding;0.000191704151247387!GO:0016044;membrane organization and biogenesis;0.0002045023943222!GO:0005657;replication fork;0.000221566999989625!GO:0030132;clathrin coat of coated pit;0.000237954547263676!GO:0030867;rough endoplasmic reticulum membrane;0.000247308965574892!GO:0030119;AP-type membrane coat adaptor complex;0.00026018075424467!GO:0048468;cell development;0.000261764482026281!GO:0008033;tRNA processing;0.000261764482026281!GO:0008092;cytoskeletal protein binding;0.000261764482026281!GO:0006626;protein targeting to mitochondrion;0.000261764482026281!GO:0007006;mitochondrial membrane organization and biogenesis;0.000269371795480077!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000270981662569799!GO:0043681;protein import into mitochondrion;0.000282484561517638!GO:0000775;chromosome, pericentric region;0.000296600555948895!GO:0016563;transcription activator activity;0.000297006802149392!GO:0031982;vesicle;0.000304489345003963!GO:0000075;cell cycle checkpoint;0.000319556840248543!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000326549328343327!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000338843315856669!GO:0031410;cytoplasmic vesicle;0.000349840952245601!GO:0000323;lytic vacuole;0.000349840952245601!GO:0005764;lysosome;0.000349840952245601!GO:0008610;lipid biosynthetic process;0.000377292471499594!GO:0051252;regulation of RNA metabolic process;0.00038738752928491!GO:0000314;organellar small ribosomal subunit;0.000442049206957141!GO:0005763;mitochondrial small ribosomal subunit;0.000442049206957141!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000462916230767118!GO:0016481;negative regulation of transcription;0.00046746785961035!GO:0015980;energy derivation by oxidation of organic compounds;0.00046746785961035!GO:0030131;clathrin adaptor complex;0.00046746785961035!GO:0001726;ruffle;0.000474362857171069!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000537590220465944!GO:0005874;microtubule;0.000565612255342898!GO:0008361;regulation of cell size;0.000595546691192178!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000595546691192178!GO:0043021;ribonucleoprotein binding;0.000600122818712919!GO:0007243;protein kinase cascade;0.00062117121502372!GO:0008094;DNA-dependent ATPase activity;0.00064628920751209!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000651344412260789!GO:0005885;Arp2/3 protein complex;0.000672916978560212!GO:0043488;regulation of mRNA stability;0.000680871000678206!GO:0043487;regulation of RNA stability;0.000680871000678206!GO:0003713;transcription coactivator activity;0.000699945764608381!GO:0008632;apoptotic program;0.00071358082264199!GO:0016049;cell growth;0.000724739644984579!GO:0033116;ER-Golgi intermediate compartment membrane;0.000733679515505437!GO:0005048;signal sequence binding;0.000740195912677174!GO:0051168;nuclear export;0.000752018697097662!GO:0006414;translational elongation;0.000774124316937113!GO:0044452;nucleolar part;0.000792487550367727!GO:0003684;damaged DNA binding;0.000811018555894711!GO:0048518;positive regulation of biological process;0.000861804155792403!GO:0030029;actin filament-based process;0.000881137227009398!GO:0000059;protein import into nucleus, docking;0.000944208481938246!GO:0046474;glycerophospholipid biosynthetic process;0.000950254108909808!GO:0001558;regulation of cell growth;0.00100771642761202!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.001027931359205!GO:0051920;peroxiredoxin activity;0.0010594695261387!GO:0050790;regulation of catalytic activity;0.00106180382436146!GO:0006612;protein targeting to membrane;0.00108481996866422!GO:0008250;oligosaccharyl transferase complex;0.00112818686644124!GO:0006091;generation of precursor metabolites and energy;0.00113929330111237!GO:0019843;rRNA binding;0.00131577381362721!GO:0015631;tubulin binding;0.00138086089783354!GO:0005856;cytoskeleton;0.00140447873243433!GO:0030880;RNA polymerase complex;0.00154033837719517!GO:0016859;cis-trans isomerase activity;0.001577422109384!GO:0046483;heterocycle metabolic process;0.00160045961804826!GO:0044262;cellular carbohydrate metabolic process;0.00171417667477184!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00180793279951829!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00180793279951829!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00180793279951829!GO:0008186;RNA-dependent ATPase activity;0.00183136116948532!GO:0004576;oligosaccharyl transferase activity;0.00197824265805157!GO:0004674;protein serine/threonine kinase activity;0.00200331230456494!GO:0050662;coenzyme binding;0.00201265940335104!GO:0030658;transport vesicle membrane;0.00206651438698413!GO:0007264;small GTPase mediated signal transduction;0.00218676925257505!GO:0006082;organic acid metabolic process;0.0022391923603312!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00233393266114441!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00244481161295044!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00246150492640211!GO:0019752;carboxylic acid metabolic process;0.00249869740008171!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00256952755646554!GO:0030125;clathrin vesicle coat;0.00267220786429276!GO:0030665;clathrin coated vesicle membrane;0.00267220786429276!GO:0030031;cell projection biogenesis;0.00270174815546408!GO:0051338;regulation of transferase activity;0.00296903737636649!GO:0051098;regulation of binding;0.00307242246003096!GO:0051087;chaperone binding;0.00317432534897542!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00318904709630299!GO:0009165;nucleotide biosynthetic process;0.00318904709630299!GO:0030176;integral to endoplasmic reticulum membrane;0.00326215034879414!GO:0009967;positive regulation of signal transduction;0.00326532871930041!GO:0046467;membrane lipid biosynthetic process;0.00339899135887214!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00340219135780797!GO:0000428;DNA-directed RNA polymerase complex;0.00340219135780797!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00343734916027754!GO:0005684;U2-dependent spliceosome;0.0034628454734305!GO:0006950;response to stress;0.00352001989038138!GO:0005791;rough endoplasmic reticulum;0.00359960454062457!GO:0050789;regulation of biological process;0.00381981399424989!GO:0051540;metal cluster binding;0.00387940821700539!GO:0051536;iron-sulfur cluster binding;0.00387940821700539!GO:0008637;apoptotic mitochondrial changes;0.00396652861362175!GO:0018196;peptidyl-asparagine modification;0.00399059922714095!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00399059922714095!GO:0016363;nuclear matrix;0.00403916434124852!GO:0017166;vinculin binding;0.0042280073160191!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00428509277380059!GO:0008168;methyltransferase activity;0.00441466878768102!GO:0051101;regulation of DNA binding;0.0044673999763696!GO:0003729;mRNA binding;0.00447368069424608!GO:0006401;RNA catabolic process;0.00447368069424608!GO:0004004;ATP-dependent RNA helicase activity;0.00455950736824332!GO:0016741;transferase activity, transferring one-carbon groups;0.00456068615614017!GO:0006979;response to oxidative stress;0.00460558129972381!GO:0007017;microtubule-based process;0.00485457446054379!GO:0007050;cell cycle arrest;0.00498696588193243!GO:0048037;cofactor binding;0.00499174877899059!GO:0006402;mRNA catabolic process;0.00499174877899059!GO:0035258;steroid hormone receptor binding;0.0050321001729581!GO:0006730;one-carbon compound metabolic process;0.00508117144626707!GO:0032508;DNA duplex unwinding;0.00510991328499533!GO:0032392;DNA geometric change;0.00510991328499533!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0053326333437978!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0053326333437978!GO:0048487;beta-tubulin binding;0.00546557773499706!GO:0008283;cell proliferation;0.00549026709918286!GO:0006778;porphyrin metabolic process;0.00556691538960732!GO:0033013;tetrapyrrole metabolic process;0.00556691538960732!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00576187109185317!GO:0015399;primary active transmembrane transporter activity;0.00576187109185317!GO:0006595;polyamine metabolic process;0.00577045582563195!GO:0006284;base-excision repair;0.00577382912678311!GO:0008022;protein C-terminus binding;0.00579285322762342!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00581352455297162!GO:0016197;endosome transport;0.00602774358848896!GO:0030660;Golgi-associated vesicle membrane;0.00602774358848896!GO:0043549;regulation of kinase activity;0.00606531658929424!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00609141472520342!GO:0030663;COPI coated vesicle membrane;0.00609141472520342!GO:0030126;COPI vesicle coat;0.00609141472520342!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00609141472520342!GO:0000082;G1/S transition of mitotic cell cycle;0.00649143749329067!GO:0009112;nucleobase metabolic process;0.00649143749329067!GO:0000049;tRNA binding;0.00652939908384277!GO:0030521;androgen receptor signaling pathway;0.00678472368906308!GO:0006289;nucleotide-excision repair;0.00761821600808624!GO:0040008;regulation of growth;0.00772616133408869!GO:0030137;COPI-coated vesicle;0.00785507819724036!GO:0005876;spindle microtubule;0.00785694311429308!GO:0046822;regulation of nucleocytoplasmic transport;0.00801241964729247!GO:0006520;amino acid metabolic process;0.0080439291861581!GO:0030027;lamellipodium;0.00804953975903949!GO:0045334;clathrin-coated endocytic vesicle;0.0080851093587236!GO:0006611;protein export from nucleus;0.00812878347677796!GO:0043284;biopolymer biosynthetic process;0.00812878347677796!GO:0046489;phosphoinositide biosynthetic process;0.00812878347677796!GO:0003746;translation elongation factor activity;0.00819996178126191!GO:0051128;regulation of cellular component organization and biogenesis;0.00847667873775888!GO:0051287;NAD binding;0.00882374023753581!GO:0008139;nuclear localization sequence binding;0.00892562006022813!GO:0045792;negative regulation of cell size;0.00905877951043092!GO:0045941;positive regulation of transcription;0.00926004583405163!GO:0003690;double-stranded DNA binding;0.00934982075871181!GO:0016311;dephosphorylation;0.00935930293702421!GO:0030308;negative regulation of cell growth;0.00945238694300513!GO:0016408;C-acyltransferase activity;0.00995717695398629!GO:0030133;transport vesicle;0.0100077103328739!GO:0030145;manganese ion binding;0.0100109334473272!GO:0006268;DNA unwinding during replication;0.0100715286013093!GO:0006509;membrane protein ectodomain proteolysis;0.0104808710766938!GO:0033619;membrane protein proteolysis;0.0104808710766938!GO:0007346;regulation of progression through mitotic cell cycle;0.0105095563304869!GO:0030659;cytoplasmic vesicle membrane;0.0105157753367437!GO:0031529;ruffle organization and biogenesis;0.0111489842522173!GO:0003682;chromatin binding;0.0111680135566375!GO:0004518;nuclease activity;0.0114718431057322!GO:0006779;porphyrin biosynthetic process;0.0115041640125811!GO:0033014;tetrapyrrole biosynthetic process;0.0115041640125811!GO:0005637;nuclear inner membrane;0.0115425205534941!GO:0045893;positive regulation of transcription, DNA-dependent;0.0117368953231422!GO:0016301;kinase activity;0.0117682509149326!GO:0033673;negative regulation of kinase activity;0.0122696911874232!GO:0006469;negative regulation of protein kinase activity;0.0122696911874232!GO:0051348;negative regulation of transferase activity;0.0126875098953754!GO:0006007;glucose catabolic process;0.0129002151456902!GO:0008629;induction of apoptosis by intracellular signals;0.0130592825619251!GO:0046519;sphingoid metabolic process;0.0131378159825152!GO:0022890;inorganic cation transmembrane transporter activity;0.0131443725953445!GO:0000776;kinetochore;0.0131744320942275!GO:0006650;glycerophospholipid metabolic process;0.0133725264834171!GO:0048500;signal recognition particle;0.0134645305139857!GO:0045859;regulation of protein kinase activity;0.0138688436482955!GO:0005869;dynactin complex;0.0139309510061417!GO:0007093;mitotic cell cycle checkpoint;0.0140935839848931!GO:0004722;protein serine/threonine phosphatase activity;0.0141890622087469!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0144296135056711!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0146059237848411!GO:0042770;DNA damage response, signal transduction;0.014819966120862!GO:0006897;endocytosis;0.0148441384085121!GO:0010324;membrane invagination;0.0148441384085121!GO:0045926;negative regulation of growth;0.0149216860506871!GO:0005774;vacuolar membrane;0.0149893689073334!GO:0005862;muscle thin filament tropomyosin;0.0150410925396234!GO:0005832;chaperonin-containing T-complex;0.0150680981684906!GO:0009303;rRNA transcription;0.0153026740819705!GO:0007052;mitotic spindle organization and biogenesis;0.0153293000426437!GO:0008047;enzyme activator activity;0.0158300427305887!GO:0043414;biopolymer methylation;0.016210906471686!GO:0043154;negative regulation of caspase activity;0.0162276679819157!GO:0043022;ribosome binding;0.0165187889336955!GO:0042168;heme metabolic process;0.0165391513409016!GO:0006383;transcription from RNA polymerase III promoter;0.0167937882127489!GO:0016125;sterol metabolic process;0.0168573442827461!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0169534367731193!GO:0030032;lamellipodium biogenesis;0.0172148842263365!GO:0006302;double-strand break repair;0.0176367179689784!GO:0051539;4 iron, 4 sulfur cluster binding;0.0176367179689784!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0176367179689784!GO:0015002;heme-copper terminal oxidase activity;0.0176367179689784!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0176367179689784!GO:0004129;cytochrome-c oxidase activity;0.0176367179689784!GO:0030128;clathrin coat of endocytic vesicle;0.0176367179689784!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0176367179689784!GO:0030122;AP-2 adaptor complex;0.0176367179689784!GO:0009116;nucleoside metabolic process;0.0177155517069099!GO:0031124;mRNA 3'-end processing;0.0177604180509389!GO:0006352;transcription initiation;0.0178794091967706!GO:0008180;signalosome;0.0183160684174098!GO:0006891;intra-Golgi vesicle-mediated transport;0.0183548469128293!GO:0004527;exonuclease activity;0.0188915517383482!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0189686791859289!GO:0007040;lysosome organization and biogenesis;0.0192651408977992!GO:0031072;heat shock protein binding;0.0195298125249406!GO:0046983;protein dimerization activity;0.019591863576288!GO:0045892;negative regulation of transcription, DNA-dependent;0.0196279577006662!GO:0006405;RNA export from nucleus;0.0198479120778876!GO:0000922;spindle pole;0.0200030774452406!GO:0001836;release of cytochrome c from mitochondria;0.0200030774452406!GO:0032259;methylation;0.0200030774452406!GO:0000287;magnesium ion binding;0.0201281582645119!GO:0043065;positive regulation of apoptosis;0.0201523889209211!GO:0003711;transcription elongation regulator activity;0.0203209905625546!GO:0015992;proton transport;0.0203435664730546!GO:0006740;NADPH regeneration;0.0203576827167755!GO:0006098;pentose-phosphate shunt;0.0203576827167755!GO:0008017;microtubule binding;0.0204374862967001!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0204374862967001!GO:0003678;DNA helicase activity;0.0205308325045358!GO:0000096;sulfur amino acid metabolic process;0.020791653527137!GO:0008312;7S RNA binding;0.020791653527137!GO:0005881;cytoplasmic microtubule;0.0208313128666097!GO:0043068;positive regulation of programmed cell death;0.0210966313501025!GO:0006818;hydrogen transport;0.0212210999324097!GO:0044433;cytoplasmic vesicle part;0.0212718101664317!GO:0016791;phosphoric monoester hydrolase activity;0.0214839188334206!GO:0006672;ceramide metabolic process;0.0215825806906973!GO:0006066;alcohol metabolic process;0.0227397519632536!GO:0000178;exosome (RNase complex);0.0228064436323754!GO:0007265;Ras protein signal transduction;0.0228529156307658!GO:0051789;response to protein stimulus;0.0230827298894999!GO:0006986;response to unfolded protein;0.0230827298894999!GO:0000086;G2/M transition of mitotic cell cycle;0.0235439311253845!GO:0008243;plasminogen activator activity;0.0237483824011406!GO:0007059;chromosome segregation;0.0243613750840467!GO:0043492;ATPase activity, coupled to movement of substances;0.0254645488399554!GO:0016584;nucleosome positioning;0.0255713017470081!GO:0019206;nucleoside kinase activity;0.0260656175338969!GO:0046426;negative regulation of JAK-STAT cascade;0.0273798061447605!GO:0043189;H4/H2A histone acetyltransferase complex;0.0273853904702053!GO:0030833;regulation of actin filament polymerization;0.0279361821920515!GO:0045936;negative regulation of phosphate metabolic process;0.028140998362192!GO:0031902;late endosome membrane;0.0282122242228438!GO:0030518;steroid hormone receptor signaling pathway;0.0282189119734902!GO:0046982;protein heterodimerization activity;0.0282876523452111!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0283849840393544!GO:0008213;protein amino acid alkylation;0.0283849840393544!GO:0006479;protein amino acid methylation;0.0283849840393544!GO:0008538;proteasome activator activity;0.0283849840393544!GO:0043281;regulation of caspase activity;0.028454461719465!GO:0006376;mRNA splice site selection;0.028575502466262!GO:0000389;nuclear mRNA 3'-splice site recognition;0.028575502466262!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0287851139234815!GO:0009451;RNA modification;0.0290731360259249!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0296656574736006!GO:0000118;histone deacetylase complex;0.0298817544157866!GO:0007033;vacuole organization and biogenesis;0.0298817544157866!GO:0051270;regulation of cell motility;0.0298817544157866!GO:0032507;maintenance of cellular protein localization;0.0299095050876049!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0302161080986703!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0311149750464052!GO:0045047;protein targeting to ER;0.0311149750464052!GO:0000228;nuclear chromosome;0.031392363123472!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0315500973299933!GO:0006144;purine base metabolic process;0.0316107833191029!GO:0051052;regulation of DNA metabolic process;0.0316850058804649!GO:0043596;nuclear replication fork;0.0324820609502252!GO:0044437;vacuolar part;0.0325767196508451!GO:0006270;DNA replication initiation;0.0331702843812642!GO:0006338;chromatin remodeling;0.0334229038537531!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0336334493180716!GO:0005758;mitochondrial intermembrane space;0.0338427677707912!GO:0006783;heme biosynthetic process;0.0340942924098684!GO:0016569;covalent chromatin modification;0.0343459597074343!GO:0040011;locomotion;0.0345678956956756!GO:0007034;vacuolar transport;0.0347872974853642!GO:0035267;NuA4 histone acetyltransferase complex;0.0349154730868363!GO:0042393;histone binding;0.0351122218942012!GO:0035035;histone acetyltransferase binding;0.0351993275596318!GO:0050178;phenylpyruvate tautomerase activity;0.0370168640965717!GO:0043086;negative regulation of catalytic activity;0.0372644213801599!GO:0031301;integral to organelle membrane;0.03735469097062!GO:0006519;amino acid and derivative metabolic process;0.0373759270079547!GO:0008426;protein kinase C inhibitor activity;0.0373759270079547!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0377431218663813!GO:0000123;histone acetyltransferase complex;0.0378431986212008!GO:0006892;post-Golgi vesicle-mediated transport;0.0381038436654069!GO:0005765;lysosomal membrane;0.0381469698549917!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0381469698549917!GO:0033043;regulation of organelle organization and biogenesis;0.0381469698549917!GO:0000209;protein polyubiquitination;0.0383135577479204!GO:0030911;TPR domain binding;0.038488607850542!GO:0000152;nuclear ubiquitin ligase complex;0.0387576946226961!GO:0005784;translocon complex;0.0390219345617664!GO:0008299;isoprenoid biosynthetic process;0.0396735225530124!GO:0006458;'de novo' protein folding;0.0397768358423068!GO:0051084;'de novo' posttranslational protein folding;0.0397768358423068!GO:0006541;glutamine metabolic process;0.0401133333034146!GO:0008536;Ran GTPase binding;0.0402329157525678!GO:0005680;anaphase-promoting complex;0.0416136374148553!GO:0007242;intracellular signaling cascade;0.0428829333332656!GO:0012506;vesicle membrane;0.0429259607521406!GO:0050681;androgen receptor binding;0.0430809848759885!GO:0004680;casein kinase activity;0.0434037269428787!GO:0019318;hexose metabolic process;0.0439247446227739!GO:0008064;regulation of actin polymerization and/or depolymerization;0.044474131272716!GO:0008652;amino acid biosynthetic process;0.0448336747292008!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0449302900438278!GO:0030127;COPII vesicle coat;0.0455934064739068!GO:0012507;ER to Golgi transport vesicle membrane;0.0455934064739068!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0455934064739068!GO:0006733;oxidoreduction coenzyme metabolic process;0.0455934064739068!GO:0006220;pyrimidine nucleotide metabolic process;0.0455934064739068!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0455934064739068!GO:0010257;NADH dehydrogenase complex assembly;0.0455934064739068!GO:0033108;mitochondrial respiratory chain complex assembly;0.0455934064739068!GO:0051272;positive regulation of cell motility;0.0455934064739068!GO:0040017;positive regulation of locomotion;0.0455934064739068!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0455934064739068!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0455934064739068!GO:0005938;cell cortex;0.0456740895411743!GO:0030041;actin filament polymerization;0.0456740895411743!GO:0003756;protein disulfide isomerase activity;0.0456812897026697!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0456812897026697!GO:0006368;RNA elongation from RNA polymerase II promoter;0.046079059553775!GO:0030134;ER to Golgi transport vesicle;0.0464885994033256!GO:0043256;laminin complex;0.0464885994033256!GO:0016272;prefoldin complex;0.0465571439016992!GO:0018193;peptidyl-amino acid modification;0.0473012909121092!GO:0000339;RNA cap binding;0.0473336614334427!GO:0004721;phosphoprotein phosphatase activity;0.0475821174649544!GO:0045806;negative regulation of endocytosis;0.0479431845013474!GO:0006354;RNA elongation;0.0481228058806465!GO:0009166;nucleotide catabolic process;0.0481228058806465!GO:0030100;regulation of endocytosis;0.0481228058806465!GO:0005996;monosaccharide metabolic process;0.0482295128952123!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0482532734539337!GO:0006096;glycolysis;0.0486074527892017!GO:0008287;protein serine/threonine phosphatase complex;0.049717243901138 | |||
|sample_id=11422 | |sample_id=11422 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=TP53:3.17321670603;PPARG:2.7538210892;VSX1,2:1.92012181576;XCPE1{core}:1.77002646719;TBX4,5:1.65679412379;ZEB1:1.57518738056;ONECUT1,2:1.27160448091;SP1:1.25798947028;GTF2A1,2:1.24191586003;bHLH_family:1.1657678316;SNAI1..3:1.16540911698;TEAD1:1.13003067209;TBP:1.12947030289;ZNF148:1.12834935457;STAT5{A,B}:1.04897292665;NR5A1,2:1.04019230707;RXRA_VDR{dimer}:0.993072002937;PAX1,9:0.97857285038;GLI1..3:0.943295728217;POU2F1..3:0.940511461296;TFAP2{A,C}:0.905629558028;GFI1:0.89431134627;TFDP1:0.884554674138;POU1F1:0.829555889374;MYOD1:0.766890098509;NFIL3:0.745326228587;FOXM1:0.728767216878;ADNP_IRX_SIX_ZHX:0.668226550192;HOX{A5,B5}:0.639995968205;CDC5L:0.625987551478;FOS_FOS{B,L1}_JUN{B,D}:0.619830187965;AR:0.605040152884;ZNF238:0.55656790097;POU3F1..4:0.54118606162;ZBTB6:0.540013435483;EBF1:0.507580965588;PAX8:0.495114590816;REST:0.482181706102;TLX1..3_NFIC{dimer}:0.479521055136;BACH2:0.466988125899;LEF1_TCF7_TCF7L1,2:0.456426735518;IKZF1:0.446555727069;ZNF423:0.436116376908;MTF1:0.425529780141;TFCP2:0.388702551739;NFY{A,B,C}:0.387081857697;ZIC1..3:0.384450593225;NKX2-3_NKX2-5:0.377621742933;LMO2:0.376869100395;NR6A1:0.365696129921;E2F1..5:0.310909869667;HIC1:0.301107384362;GCM1,2:0.293634339902;UFEwm:0.283661949743;MAZ:0.276396571026;TFAP4:0.26849964331;TFAP2B:0.262003698727;NANOG:0.261288835995;POU6F1:0.257646993859;NKX2-2,8:0.236679250564;ARID5B:0.222388007853;FOSL2:0.216083865142;SOX17:0.195946539537;HMX1:0.192174676535;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190824957479;SOX{8,9,10}:0.190237832758;ZNF143:0.159331268657;MYB:0.147389591144;OCT4_SOX2{dimer}:0.115791672419;RXR{A,B,G}:0.108109916821;NR3C1:0.0869342213959;EGR1..3:0.0669732222933;FOXQ1:0.0587975193726;CEBPA,B_DDIT3:0.0465276753956;HAND1,2:0.0388583805512;GATA6:0.0234878759973;HES1:0.00521066359803;NR1H4:0.000500995190496;HNF4A_NR2F1,2:-0.00546425565498;TEF:-0.0108571261227;EN1,2:-0.019190991195;GFI1B:-0.0265978641027;NFE2:-0.0401034711234;PBX1:-0.0458437478709;SRF:-0.0505132888727;NKX3-2:-0.0713678081646;SPZ1:-0.0797562705896;FOXL1:-0.125733934954;HLF:-0.126418102419;EP300:-0.127679198334;NFIX:-0.150499058399;ESR1:-0.160734333948;GTF2I:-0.201254085742;RREB1:-0.219645750999;YY1:-0.223005672923;HNF1A:-0.235640516219;ETS1,2:-0.252163593946;NKX2-1,4:-0.265349954206;PAX2:-0.26542390277;BREu{core}:-0.268857346586;GZF1:-0.287269909579;NFKB1_REL_RELA:-0.287454278004;MED-1{core}:-0.288246571684;KLF4:-0.298322146193;ELK1,4_GABP{A,B1}:-0.301061294429;ZFP161:-0.307552659139;SOX2:-0.314876322113;POU5F1:-0.315783126955;SMAD1..7,9:-0.321536442296;NRF1:-0.335527667395;LHX3,4:-0.338930987753;PAX5:-0.352334506578;HOX{A4,D4}:-0.356296276078;NFE2L2:-0.377702776678;TOPORS:-0.394524702749;SPIB:-0.403911311062;MTE{core}:-0.409930486018;NFE2L1:-0.424699539324;SPI1:-0.435693971026;RUNX1..3:-0.439652642493;HIF1A:-0.472701166103;NFATC1..3:-0.486183398051;ESRRA:-0.493797743056;PITX1..3:-0.49620994334;MEF2{A,B,C,D}:-0.501696977908;STAT2,4,6:-0.55180976061;NHLH1,2:-0.569956530967;JUN:-0.571886355565;IRF7:-0.57320323464;CUX2:-0.578996372212;HOXA9_MEIS1:-0.587481007547;MYBL2:-0.59042396485;FOXA2:-0.596954788636;T:-0.597298149343;ALX1:-0.597824738532;FOX{F1,F2,J1}:-0.60142733809;AIRE:-0.615799966725;RFX1:-0.627135189697;HSF1,2:-0.637156157619;ATF5_CREB3:-0.643366716023;DBP:-0.646279824729;ATF2:-0.663690053469;ELF1,2,4:-0.665457888634;PRDM1:-0.701381886705;CRX:-0.70440863092;FOXO1,3,4:-0.716646046938;PDX1:-0.736731333972;MYFfamily:-0.757334327939;TAL1_TCF{3,4,12}:-0.781301422782;RBPJ:-0.784734750575;SOX5:-0.815487086202;PRRX1,2:-0.825978268668;TLX2:-0.84225789749;PAX3,7:-0.859000956262;HOX{A6,A7,B6,B7}:-0.876938670115;PATZ1:-0.883899278279;CREB1:-0.900969591554;PAX4:-0.936018389163;ALX4:-0.937715728238;RORA:-0.937882487605;FOX{I1,J2}:-0.965148146814;SREBF1,2:-0.968873494806;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.976084406026;FOXN1:-0.977286684987;MZF1:-1.02061547852;EVI1:-1.02784741582;FOXP3:-1.04710193702;DMAP1_NCOR{1,2}_SMARC:-1.06031558034;TGIF1:-1.06998678408;NKX3-1:-1.07472289335;FOX{D1,D2}:-1.08742450344;XBP1:-1.09313163276;GATA4:-1.13273679035;AHR_ARNT_ARNT2:-1.13865534259;HMGA1,2:-1.17578650724;MAFB:-1.22028540653;ATF6:-1.22588891542;ZBTB16:-1.22897281621;NANOG{mouse}:-1.23520634286;IRF1,2:-1.32379435204;PAX6:-1.35770880914;HBP1_HMGB_SSRP1_UBTF:-1.36816789149;BPTF:-1.39743808619;ATF4:-1.39878990329;RFX2..5_RFXANK_RFXAP:-1.39880578389;FOXP1:-1.42837770836;CDX1,2,4:-1.72212087911;FOXD3:-1.77049209475;NKX6-1,2:-1.78132302756;STAT1,3:-1.81549711908;ZNF384:-1.82546830134;IKZF2:-1.83299330064 | |top_motifs=TP53:3.17321670603;PPARG:2.7538210892;VSX1,2:1.92012181576;XCPE1{core}:1.77002646719;TBX4,5:1.65679412379;ZEB1:1.57518738056;ONECUT1,2:1.27160448091;SP1:1.25798947028;GTF2A1,2:1.24191586003;bHLH_family:1.1657678316;SNAI1..3:1.16540911698;TEAD1:1.13003067209;TBP:1.12947030289;ZNF148:1.12834935457;STAT5{A,B}:1.04897292665;NR5A1,2:1.04019230707;RXRA_VDR{dimer}:0.993072002937;PAX1,9:0.97857285038;GLI1..3:0.943295728217;POU2F1..3:0.940511461296;TFAP2{A,C}:0.905629558028;GFI1:0.89431134627;TFDP1:0.884554674138;POU1F1:0.829555889374;MYOD1:0.766890098509;NFIL3:0.745326228587;FOXM1:0.728767216878;ADNP_IRX_SIX_ZHX:0.668226550192;HOX{A5,B5}:0.639995968205;CDC5L:0.625987551478;FOS_FOS{B,L1}_JUN{B,D}:0.619830187965;AR:0.605040152884;ZNF238:0.55656790097;POU3F1..4:0.54118606162;ZBTB6:0.540013435483;EBF1:0.507580965588;PAX8:0.495114590816;REST:0.482181706102;TLX1..3_NFIC{dimer}:0.479521055136;BACH2:0.466988125899;LEF1_TCF7_TCF7L1,2:0.456426735518;IKZF1:0.446555727069;ZNF423:0.436116376908;MTF1:0.425529780141;TFCP2:0.388702551739;NFY{A,B,C}:0.387081857697;ZIC1..3:0.384450593225;NKX2-3_NKX2-5:0.377621742933;LMO2:0.376869100395;NR6A1:0.365696129921;E2F1..5:0.310909869667;HIC1:0.301107384362;GCM1,2:0.293634339902;UFEwm:0.283661949743;MAZ:0.276396571026;TFAP4:0.26849964331;TFAP2B:0.262003698727;NANOG:0.261288835995;POU6F1:0.257646993859;NKX2-2,8:0.236679250564;ARID5B:0.222388007853;FOSL2:0.216083865142;SOX17:0.195946539537;HMX1:0.192174676535;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190824957479;SOX{8,9,10}:0.190237832758;ZNF143:0.159331268657;MYB:0.147389591144;OCT4_SOX2{dimer}:0.115791672419;RXR{A,B,G}:0.108109916821;NR3C1:0.0869342213959;EGR1..3:0.0669732222933;FOXQ1:0.0587975193726;CEBPA,B_DDIT3:0.0465276753956;HAND1,2:0.0388583805512;GATA6:0.0234878759973;HES1:0.00521066359803;NR1H4:0.000500995190496;HNF4A_NR2F1,2:-0.00546425565498;TEF:-0.0108571261227;EN1,2:-0.019190991195;GFI1B:-0.0265978641027;NFE2:-0.0401034711234;PBX1:-0.0458437478709;SRF:-0.0505132888727;NKX3-2:-0.0713678081646;SPZ1:-0.0797562705896;FOXL1:-0.125733934954;HLF:-0.126418102419;EP300:-0.127679198334;NFIX:-0.150499058399;ESR1:-0.160734333948;GTF2I:-0.201254085742;RREB1:-0.219645750999;YY1:-0.223005672923;HNF1A:-0.235640516219;ETS1,2:-0.252163593946;NKX2-1,4:-0.265349954206;PAX2:-0.26542390277;BREu{core}:-0.268857346586;GZF1:-0.287269909579;NFKB1_REL_RELA:-0.287454278004;MED-1{core}:-0.288246571684;KLF4:-0.298322146193;ELK1,4_GABP{A,B1}:-0.301061294429;ZFP161:-0.307552659139;SOX2:-0.314876322113;POU5F1:-0.315783126955;SMAD1..7,9:-0.321536442296;NRF1:-0.335527667395;LHX3,4:-0.338930987753;PAX5:-0.352334506578;HOX{A4,D4}:-0.356296276078;NFE2L2:-0.377702776678;TOPORS:-0.394524702749;SPIB:-0.403911311062;MTE{core}:-0.409930486018;NFE2L1:-0.424699539324;SPI1:-0.435693971026;RUNX1..3:-0.439652642493;HIF1A:-0.472701166103;NFATC1..3:-0.486183398051;ESRRA:-0.493797743056;PITX1..3:-0.49620994334;MEF2{A,B,C,D}:-0.501696977908;STAT2,4,6:-0.55180976061;NHLH1,2:-0.569956530967;JUN:-0.571886355565;IRF7:-0.57320323464;CUX2:-0.578996372212;HOXA9_MEIS1:-0.587481007547;MYBL2:-0.59042396485;FOXA2:-0.596954788636;T:-0.597298149343;ALX1:-0.597824738532;FOX{F1,F2,J1}:-0.60142733809;AIRE:-0.615799966725;RFX1:-0.627135189697;HSF1,2:-0.637156157619;ATF5_CREB3:-0.643366716023;DBP:-0.646279824729;ATF2:-0.663690053469;ELF1,2,4:-0.665457888634;PRDM1:-0.701381886705;CRX:-0.70440863092;FOXO1,3,4:-0.716646046938;PDX1:-0.736731333972;MYFfamily:-0.757334327939;TAL1_TCF{3,4,12}:-0.781301422782;RBPJ:-0.784734750575;SOX5:-0.815487086202;PRRX1,2:-0.825978268668;TLX2:-0.84225789749;PAX3,7:-0.859000956262;HOX{A6,A7,B6,B7}:-0.876938670115;PATZ1:-0.883899278279;CREB1:-0.900969591554;PAX4:-0.936018389163;ALX4:-0.937715728238;RORA:-0.937882487605;FOX{I1,J2}:-0.965148146814;SREBF1,2:-0.968873494806;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.976084406026;FOXN1:-0.977286684987;MZF1:-1.02061547852;EVI1:-1.02784741582;FOXP3:-1.04710193702;DMAP1_NCOR{1,2}_SMARC:-1.06031558034;TGIF1:-1.06998678408;NKX3-1:-1.07472289335;FOX{D1,D2}:-1.08742450344;XBP1:-1.09313163276;GATA4:-1.13273679035;AHR_ARNT_ARNT2:-1.13865534259;HMGA1,2:-1.17578650724;MAFB:-1.22028540653;ATF6:-1.22588891542;ZBTB16:-1.22897281621;NANOG{mouse}:-1.23520634286;IRF1,2:-1.32379435204;PAX6:-1.35770880914;HBP1_HMGB_SSRP1_UBTF:-1.36816789149;BPTF:-1.39743808619;ATF4:-1.39878990329;RFX2..5_RFXANK_RFXAP:-1.39880578389;FOXP1:-1.42837770836;CDX1,2,4:-1.72212087911;FOXD3:-1.77049209475;NKX6-1,2:-1.78132302756;STAT1,3:-1.81549711908;ZNF384:-1.82546830134;IKZF2:-1.83299330064 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11422-118F9;search_select_hide=table117:FF:11422-118F9 | |||
}} | }} | ||
Latest revision as of 18:00, 4 June 2020
| Name: | Mammary Epithelial Cell, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12032 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12032
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12032
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.6 |
| 10 | 10 | 0.0584 |
| 100 | 100 | 0.919 |
| 101 | 101 | 0.00626 |
| 102 | 102 | 0.0982 |
| 103 | 103 | 0.551 |
| 104 | 104 | 0.589 |
| 105 | 105 | 0.301 |
| 106 | 106 | 0.243 |
| 107 | 107 | 0.0103 |
| 108 | 108 | 0.768 |
| 109 | 109 | 8.51762e-4 |
| 11 | 11 | 0.253 |
| 110 | 110 | 0.304 |
| 111 | 111 | 0.626 |
| 112 | 112 | 0.936 |
| 113 | 113 | 0.213 |
| 114 | 114 | 0.849 |
| 115 | 115 | 0.286 |
| 116 | 116 | 0.65 |
| 117 | 117 | 0.369 |
| 118 | 118 | 0.63 |
| 119 | 119 | 0.288 |
| 12 | 12 | 0.744 |
| 120 | 120 | 0.125 |
| 121 | 121 | 0.407 |
| 122 | 122 | 0.084 |
| 123 | 123 | 0.0806 |
| 124 | 124 | 0.0601 |
| 125 | 125 | 0.736 |
| 126 | 126 | 0.604 |
| 127 | 127 | 0.0628 |
| 128 | 128 | 0.952 |
| 129 | 129 | 0.243 |
| 13 | 13 | 0.237 |
| 130 | 130 | 0.21 |
| 131 | 131 | 0.475 |
| 132 | 132 | 0.322 |
| 133 | 133 | 0.0302 |
| 134 | 134 | 0.055 |
| 135 | 135 | 0.884 |
| 136 | 136 | 0.0515 |
| 137 | 137 | 0.0135 |
| 138 | 138 | 0.36 |
| 139 | 139 | 0.0941 |
| 14 | 14 | 0.882 |
| 140 | 140 | 0.903 |
| 141 | 141 | 0.468 |
| 142 | 142 | 0.0327 |
| 143 | 143 | 0.996 |
| 144 | 144 | 0.191 |
| 145 | 145 | 0.427 |
| 146 | 146 | 0.00721 |
| 147 | 147 | 0.246 |
| 148 | 148 | 0.0564 |
| 149 | 149 | 0.592 |
| 15 | 15 | 0.639 |
| 150 | 150 | 0.238 |
| 151 | 151 | 0.339 |
| 152 | 152 | 0.0178 |
| 153 | 153 | 0.396 |
| 154 | 154 | 0.527 |
| 155 | 155 | 0.824 |
| 156 | 156 | 0.577 |
| 157 | 157 | 0.88 |
| 158 | 158 | 0.0558 |
| 159 | 159 | 0.886 |
| 16 | 16 | 0.0764 |
| 160 | 160 | 0.0863 |
| 161 | 161 | 0.291 |
| 162 | 162 | 0.515 |
| 163 | 163 | 0.852 |
| 164 | 164 | 0.722 |
| 165 | 165 | 0.936 |
| 166 | 166 | 0.63 |
| 167 | 167 | 0.183 |
| 168 | 168 | 0.577 |
| 169 | 169 | 0.195 |
| 17 | 17 | 0.296 |
| 18 | 18 | 0.794 |
| 19 | 19 | 0.983 |
| 2 | 2 | 0.0577 |
| 20 | 20 | 0.764 |
| 21 | 21 | 0.886 |
| 22 | 22 | 0.194 |
| 23 | 23 | 0.956 |
| 24 | 24 | 0.252 |
| 25 | 25 | 0.621 |
| 26 | 26 | 0.289 |
| 27 | 27 | 0.199 |
| 28 | 28 | 0.833 |
| 29 | 29 | 0.891 |
| 3 | 3 | 0.71 |
| 30 | 30 | 0.0193 |
| 31 | 31 | 0.621 |
| 32 | 32 | 0.76 |
| 33 | 33 | 0.244 |
| 34 | 34 | 0.795 |
| 35 | 35 | 0.0633 |
| 36 | 36 | 0.256 |
| 37 | 37 | 0.922 |
| 38 | 38 | 0.448 |
| 39 | 39 | 0.346 |
| 4 | 4 | 0.447 |
| 40 | 40 | 0.0473 |
| 41 | 41 | 0.554 |
| 42 | 42 | 0.783 |
| 43 | 43 | 0.75 |
| 44 | 44 | 0.779 |
| 45 | 45 | 0.0813 |
| 46 | 46 | 0.821 |
| 47 | 47 | 0.466 |
| 48 | 48 | 0.128 |
| 49 | 49 | 0.201 |
| 5 | 5 | 0.271 |
| 50 | 50 | 0.506 |
| 51 | 51 | 0.899 |
| 52 | 52 | 0.479 |
| 53 | 53 | 0.378 |
| 54 | 54 | 0.649 |
| 55 | 55 | 0.649 |
| 56 | 56 | 0.464 |
| 57 | 57 | 0.585 |
| 58 | 58 | 0.437 |
| 59 | 59 | 0.197 |
| 6 | 6 | 0.598 |
| 60 | 60 | 0.413 |
| 61 | 61 | 0.907 |
| 62 | 62 | 0.369 |
| 63 | 63 | 0.327 |
| 64 | 64 | 0.404 |
| 65 | 65 | 0.504 |
| 66 | 66 | 0.228 |
| 67 | 67 | 0.304 |
| 68 | 68 | 0.614 |
| 69 | 69 | 0.0532 |
| 7 | 7 | 0.84 |
| 70 | 70 | 0.782 |
| 71 | 71 | 0.244 |
| 72 | 72 | 0.827 |
| 73 | 73 | 0.00594 |
| 74 | 74 | 0.15 |
| 75 | 75 | 0.791 |
| 76 | 76 | 0.248 |
| 77 | 77 | 0.0323 |
| 78 | 78 | 0.358 |
| 79 | 79 | 0.442 |
| 8 | 8 | 0.314 |
| 80 | 80 | 0.553 |
| 81 | 81 | 0.393 |
| 82 | 82 | 0.706 |
| 83 | 83 | 0.706 |
| 84 | 84 | 0.281 |
| 85 | 85 | 0.831 |
| 86 | 86 | 0.511 |
| 87 | 87 | 0.00401 |
| 88 | 88 | 0.677 |
| 89 | 89 | 0.00482 |
| 9 | 9 | 0.896 |
| 90 | 90 | 0.00161 |
| 91 | 91 | 0.884 |
| 92 | 92 | 0.4 |
| 93 | 93 | 0.365 |
| 94 | 94 | 0.328 |
| 95 | 95 | 0.0273 |
| 96 | 96 | 0.364 |
| 97 | 97 | 0.849 |
| 98 | 98 | 0.47 |
| 99 | 99 | 3.11316e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12032
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000088 (human mammary epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
