FF:11426-118G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005685 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005685 | ||
|accession_numbers=CAGE;DRX008394;DRR009266;DRZ000691;DRZ002076;DRZ012041;DRZ013426 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036995;DRR041361;DRZ007003 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000127,FF:0000128 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%252c%2520donor3.CNhs12036.11426-118G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%252c%2520donor3.CNhs12036.11426-118G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Osteoblast%252c%2520donor3.CNhs12036.11426-118G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%252c%2520donor3.CNhs12036.11426-118G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Osteoblast%252c%2520donor3.CNhs12036.11426-118G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11426-118G4 | |id=FF:11426-118G4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000127;;FF:0000128 | ||
|is_obsolete= | |||
|library_id=CNhs12036 | |||
|library_id_phase_based=2:CNhs12036 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11426 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.ACTTGA.11426 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11426 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.ACTTGA.11426 | |||
|name=Osteoblast, donor3 | |name=Osteoblast, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12036,LSID837,release011,COMPLETED | |profile_hcage=CNhs12036,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.298464848034016,0.0810916444402064,0,0,0,0,0,0,0,0,0,0,0,0,0,0.550494509127005,0,0,0,0,0,0.185760652337057,0,0,-0.0594694964537731,0,0,0,0,0,0,0,0,0,0,0,0,0.36405297527168,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.239918982845669,0,0.0734870933250891,0.13632043160929,0.0393280703666847,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.13632043160929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.042434069054391,0.182765049208888,0,0,0,-0.0097901728428036,0.0870960158007615,0.0367435466625445,0.13632043160929,0,0,-0.0980353512377064,-0.0185177093780608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.028213378117816,0.191201518499852,0,0,0.258314181375518,0.41003886351374,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0734870933250891,-0.0980353512377064,0,0,0,0,0,0,0,0,0.13632043160929,0,0,0.501724311941421,0,0.142313233399148,-0.0700280491983827,0,0,-0.0198848759103089,0,0.191201518499852,0,0,0,0,0,0,0,0.402950006440845,0,0.273090152122991,0,0,0,0,-0.0186252810838506,-0.231985137573318,0,-0.106097845344865,0.00514283224772093,0,0,0,0,0.379961508900023,0,-0.120879483793741,0.157198814522251,-0.13788746419086,0.403249445655697,-0.04680465889238,0,0,0,0.224319467773014,-0.168089168809094,0,0,0.401668674586542,0.12092886479859,0,0,1.11624970927347,0,0.295895610468945,0.059519749525964,0,-0.0878909424761652,0,0,0,0,0,0,0,0,0,0,0,0.0474102956457528,-0.25350150335388,0,0,0,0,0.00427374115286738,0,0.00010354760686887,-0.0497834522442612,0.227023396373879,-0.0257426905308413,0.0441295524339963,0,-0.166069295400623,0.0293733299761356,-0.273431189423536,0.253452439397643,0.136316699233976,0.291182879241501,0.20085915543874,0.170541653770716,0.107026262132647,0.11608525144184,0.207947611563186,0.0496768309395893,0.456580495808415,-0.00859383809322556,0.0734870933250891,0,0.113692592020549,-0.258310111185369,0,-0.0177159706845762,0.180815760491891,-0.0221290803296139,0.198803538430569,0.0480126186362706,0.099178444367094,0.144254379807523,-0.00278898179412597,0.0736334204968148,0.078211499954306,0.686697738188405,0,0.13632043160929,0.0191926944548924,0.0721840479382535,0.0643776374764716,-0.0399991929511492,0.149169702309604,-0.0592064509911083,0.00514283224772093,0.0734870933250891,0.369052205881934,0.127497895744445,0,0,0.271512513712382,0,0,0,0,0,0.147544430012326,-0.17954588614647,-0.096535129946255,0,0.0255487018032769,0.0734870933250891,-0.0317511436558818,0,-0.0673911201091033,-0.072522804132305,0.0312059747748846,-0.0527148217505672,0,0.12093390482276,-0.0431585522389056,-0.0915036030139137,0.174192031601523,0.0150402665132639,-0.059541458807067,-0.227216052958977,-0.0097901728428036,-0.101254644589265,0.119803546783179,-0.0881268324752877,0,0.235987109348028,-0.0829112946282643,0,0.200358811639416,0.0734870933250891,-0.00787550717317242,0,-0.144180878825128,0,0.137185270388632,0.236119801815783,-0.302968942971396,-0.212169458146503,0,-0.0175149316762795,0.475048155702814,0,-0.0560846115242888,0,0.0734870933250891,0.791318483304812,0.07885758677644,-0.143490212059944,0.0909221109816033,0,0.219305223993334,0,0,0.0356556256171441,-0.235476037764389,0.0734870933250891,-0.127104118719168,0.061727560755268,-0.0973823651432343,-0.0424839801098449,0.191201518499852,0,0.267604645528893,0.0734870933250891,0.359946256883696,-0.0301010835905003,0.235615381842411,0.182765049208888,0.382021167673344,0.102159547310838,0.053128542401897,0,0,-0.177527765965176,0,0.214879342015199,0,0,0.10436348311367,0.123290869855536,0,0,0.616399452151157,-0.07530619913493,0,0,0,0,0.0367435466625445,0,0,-0.499182526812556,0.00511292666724822,0,0.244712458024756,0,0.0734870933250891,0,0,0,0,0,0.481164598791349,0.586335761864888,0.0726535276797161,0.0681841028234316,0,0,0,0,0.0241955802921941,-0.203236562094724,0,-0.131862706497632,0,0.0367435466625445,0,0,-0.0861409897892114,0,0,0,0,0.133471061446188,0.211053785769846,0,0,0,-0.0370354187561216,0,0,0,0,-0.0417267705657318,0,0,-0.178047665217727,0,0.0355643633381368,0.0547385520624484,0,0.0833668313377803,0.558630608962431,-0.107298181131412,0,0,-0.261347131789888,0,0.0196067463669071,-0.103514399055372,-0.0233276534842542,0,-0.0209247759461169,0,0,0,0,0,0,-0.140827419074667,0,0,0,0,0,0,0,0,0,0,0,-0.101518912610655,0.0989774618413415,0,0,0,0,0,0,0,0.0126375235836415,-0.368458889436365,0,0,0,0,0,0.13632043160929,0,0,-0.335105508053952,0,0,0.0734870933250891,0,0,0.0393280703666847,0,0,0,0,0.0886961955553238,0,0,0.298464848034016,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0498319927103586,0.532960310536031,0,0.0734870933250891,0,0,0,0,0,0.149937712613782,0,0.0734870933250891,0,0,0.0224360579003127,0,0,0,-0.0313092914640673,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661778044946127,0.0119679678823222,0.175153424632823,0.0734870933250891,0,0,0.228858007208436,0,0,0,0,0,0,0.0368197917761178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191201518499852,0,0,0,0,0,0,-0.061367927484915,0,0,0,0,0.191201518499852,0,0,0.185760652337057,0,0,-0.0920328098005262,0,0,0,0,0.0620826537119507,0,-0.0712601655523169,0.532981541707248,0.128946506465019,0,0,0,0.0137746433221899,0.239918982845669,0.00607620934957143,0.076106482137882,0.13632043160929,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.550494509127005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0734870933250891,0.0734870933250891,0,0,0,0,0,0,0.00273218338712805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.139599136331955,0,0,0,0,0,0,0,0,0.0734870933250891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0734870933250891,0,0,0,0.101404809101666,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142979443260798,0,0.309190384877045,0,0,0,0,0,0,0,0,0,0,0,0.0734870933250891,0,0,0,0.073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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA406-R10f | |rna_catalog_number=CA406-R10f | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118G4 | |rna_tube_id=118G4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.ACTTGA | |||
|sample_age=embryo 22week | |sample_age=embryo 22week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.28416700999987e-244!GO:0043226;organelle;2.17106473289809e-195!GO:0005737;cytoplasm;3.09105680070176e-195!GO:0043229;intracellular organelle;4.39917965678985e-195!GO:0043231;intracellular membrane-bound organelle;1.22533241532454e-186!GO:0043227;membrane-bound organelle;2.91987195611028e-186!GO:0044422;organelle part;3.02926967765157e-139!GO:0044446;intracellular organelle part;6.88336284295854e-138!GO:0044444;cytoplasmic part;2.05544340588206e-133!GO:0032991;macromolecular complex;5.29712912917776e-95!GO:0005515;protein binding;1.15885242820808e-88!GO:0044238;primary metabolic process;1.03492471226962e-83!GO:0044237;cellular metabolic process;4.10235518924395e-83!GO:0030529;ribonucleoprotein complex;7.24904137167861e-80!GO:0043170;macromolecule metabolic process;1.17775668235404e-78!GO:0005634;nucleus;3.638748784904e-73!GO:0043233;organelle lumen;1.42193644141467e-68!GO:0031974;membrane-enclosed lumen;1.42193644141467e-68!GO:0044428;nuclear part;6.23942191904396e-65!GO:0005739;mitochondrion;1.22535456983196e-63!GO:0003723;RNA binding;4.64048967166834e-58!GO:0016043;cellular component organization and biogenesis;1.13527436570471e-54!GO:0005840;ribosome;1.34827544356185e-50!GO:0031090;organelle membrane;2.09688200606758e-49!GO:0043234;protein complex;1.01540271991471e-48!GO:0019538;protein metabolic process;2.08556235142233e-48!GO:0006412;translation;1.39194192490553e-46!GO:0015031;protein transport;5.23047323719025e-45!GO:0043283;biopolymer metabolic process;6.61307563961389e-45!GO:0033036;macromolecule localization;1.09987354792701e-44!GO:0003735;structural constituent of ribosome;2.00381057169997e-44!GO:0044260;cellular macromolecule metabolic process;1.83274230681212e-43!GO:0044429;mitochondrial part;1.83527299523082e-43!GO:0044267;cellular protein metabolic process;1.40341536713193e-42!GO:0008104;protein localization;3.98274564744741e-42!GO:0045184;establishment of protein localization;5.76509590990129e-42!GO:0006396;RNA processing;4.93883576551454e-41!GO:0031981;nuclear lumen;3.3383772103458e-40!GO:0031967;organelle envelope;2.20552728327664e-39!GO:0031975;envelope;4.31792833375091e-39!GO:0009058;biosynthetic process;7.24983352705929e-39!GO:0010467;gene expression;9.96177552543211e-39!GO:0033279;ribosomal subunit;1.20840696575947e-38!GO:0005829;cytosol;2.89120569120932e-38!GO:0044249;cellular biosynthetic process;4.20479807141681e-37!GO:0046907;intracellular transport;4.35215448412172e-37!GO:0009059;macromolecule biosynthetic process;4.66927236911733e-37!GO:0043228;non-membrane-bound organelle;1.89395030264677e-36!GO:0043232;intracellular non-membrane-bound organelle;1.89395030264677e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.55244177099236e-36!GO:0006996;organelle organization and biogenesis;8.4125424580786e-36!GO:0016071;mRNA metabolic process;6.34694062629394e-32!GO:0006886;intracellular protein transport;4.17273222309265e-30!GO:0065003;macromolecular complex assembly;6.74433757062865e-30!GO:0008380;RNA splicing;1.47661238093837e-29!GO:0005740;mitochondrial envelope;7.41964052500103e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.29653762503126e-29!GO:0006397;mRNA processing;1.18132442703788e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.12755304512835e-27!GO:0022607;cellular component assembly;2.85556727462412e-27!GO:0031966;mitochondrial membrane;2.91530415732643e-27!GO:0019866;organelle inner membrane;1.29550481074972e-26!GO:0005654;nucleoplasm;8.65883185531749e-25!GO:0005743;mitochondrial inner membrane;1.72440219241568e-24!GO:0051649;establishment of cellular localization;3.54744860244147e-24!GO:0051641;cellular localization;3.7696399777761e-24!GO:0006259;DNA metabolic process;9.64393248963559e-24!GO:0007049;cell cycle;3.4257835598133e-23!GO:0044445;cytosolic part;2.59205798970736e-22!GO:0000166;nucleotide binding;1.67421712584969e-21!GO:0005681;spliceosome;3.8173347814291e-21!GO:0015934;large ribosomal subunit;4.63223753120628e-21!GO:0044451;nucleoplasm part;9.35293192343875e-21!GO:0006119;oxidative phosphorylation;1.37792631446988e-20!GO:0044455;mitochondrial membrane part;1.94235180634882e-20!GO:0012505;endomembrane system;2.27265514090041e-19!GO:0016462;pyrophosphatase activity;7.26041964618903e-19!GO:0005783;endoplasmic reticulum;7.29589625433498e-19!GO:0048770;pigment granule;8.35040927116183e-19!GO:0042470;melanosome;8.35040927116183e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.78864690715958e-19!GO:0006457;protein folding;1.21384283624992e-18!GO:0015935;small ribosomal subunit;1.2275463234119e-18!GO:0003676;nucleic acid binding;1.29853041281706e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;1.57351707926248e-18!GO:0031980;mitochondrial lumen;5.63703586036413e-18!GO:0005759;mitochondrial matrix;5.63703586036413e-18!GO:0022402;cell cycle process;6.27181295236097e-18!GO:0016874;ligase activity;6.34123747687783e-18!GO:0017111;nucleoside-triphosphatase activity;7.71001637660574e-18!GO:0008134;transcription factor binding;9.03927911604056e-18!GO:0000278;mitotic cell cycle;1.83477211140899e-17!GO:0005794;Golgi apparatus;2.63385887738917e-17!GO:0006512;ubiquitin cycle;3.0600884716544e-17!GO:0032553;ribonucleotide binding;4.01416340135231e-16!GO:0032555;purine ribonucleotide binding;4.01416340135231e-16!GO:0005746;mitochondrial respiratory chain;6.11392310900654e-16!GO:0016070;RNA metabolic process;6.50671854733972e-16!GO:0005730;nucleolus;8.8009799590325e-16!GO:0044432;endoplasmic reticulum part;1.01673256859716e-15!GO:0017076;purine nucleotide binding;1.16425737937087e-15!GO:0006605;protein targeting;1.55106132591858e-15!GO:0043285;biopolymer catabolic process;1.58300230147223e-15!GO:0022618;protein-RNA complex assembly;2.14116938255326e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.16530252640591e-15!GO:0044265;cellular macromolecule catabolic process;3.36563298429319e-15!GO:0051186;cofactor metabolic process;3.6908517723893e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.29744388492685e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.12363007064524e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.22677235437861e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.34589742628983e-14!GO:0003954;NADH dehydrogenase activity;1.34589742628983e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.34589742628983e-14!GO:0043412;biopolymer modification;1.3922005406906e-14!GO:0009057;macromolecule catabolic process;1.49573581698012e-14!GO:0048193;Golgi vesicle transport;1.87237536040263e-14!GO:0019941;modification-dependent protein catabolic process;2.02263277452489e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.02263277452489e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.62211031211055e-14!GO:0044257;cellular protein catabolic process;2.62211031211055e-14!GO:0030163;protein catabolic process;3.90274835792091e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.73193292360774e-14!GO:0005761;mitochondrial ribosome;1.10182540151032e-13!GO:0000313;organellar ribosome;1.10182540151032e-13!GO:0008135;translation factor activity, nucleic acid binding;1.66587809091872e-13!GO:0006464;protein modification process;2.79778007173002e-13!GO:0051082;unfolded protein binding;4.12607656440997e-13!GO:0005524;ATP binding;7.99045654949526e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.04569218081791e-12!GO:0045271;respiratory chain complex I;1.04569218081791e-12!GO:0005747;mitochondrial respiratory chain complex I;1.04569218081791e-12!GO:0016192;vesicle-mediated transport;1.11149951912046e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.58824355046079e-12!GO:0042773;ATP synthesis coupled electron transport;1.58824355046079e-12!GO:0042254;ribosome biogenesis and assembly;1.62277570213303e-12!GO:0032559;adenyl ribonucleotide binding;1.76348405541409e-12!GO:0044248;cellular catabolic process;3.44980284760896e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.48607184694887e-12!GO:0012501;programmed cell death;4.06628049574192e-12!GO:0022403;cell cycle phase;4.23571799035669e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.84770244208357e-12!GO:0007067;mitosis;5.44481927302054e-12!GO:0031965;nuclear membrane;5.62740183264048e-12!GO:0000087;M phase of mitotic cell cycle;6.16415935923151e-12!GO:0030554;adenyl nucleotide binding;6.27411382316417e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;7.09389699546968e-12!GO:0000375;RNA splicing, via transesterification reactions;7.09389699546968e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.09389699546968e-12!GO:0043687;post-translational protein modification;8.97741099364202e-12!GO:0048523;negative regulation of cellular process;9.61211496965623e-12!GO:0006915;apoptosis;1.02675610373946e-11!GO:0005793;ER-Golgi intermediate compartment;1.24187764848709e-11!GO:0006732;coenzyme metabolic process;1.31235572216718e-11!GO:0005694;chromosome;1.55387381235431e-11!GO:0003712;transcription cofactor activity;1.64181219937741e-11!GO:0005635;nuclear envelope;1.68847380879791e-11!GO:0051276;chromosome organization and biogenesis;1.9719099228003e-11!GO:0044453;nuclear membrane part;2.45123830051456e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;4.11058395503313e-11!GO:0009055;electron carrier activity;4.39742310119081e-11!GO:0008219;cell death;7.05289703005934e-11!GO:0016265;death;7.05289703005934e-11!GO:0006974;response to DNA damage stimulus;7.07152724726911e-11!GO:0006913;nucleocytoplasmic transport;8.91191760216372e-11!GO:0044427;chromosomal part;1.491433483096e-10!GO:0051726;regulation of cell cycle;1.58226670783223e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.63516718883182e-10!GO:0000074;regulation of progression through cell cycle;1.88813439938504e-10!GO:0051169;nuclear transport;2.24104674179618e-10!GO:0006323;DNA packaging;2.29643310887962e-10!GO:0006366;transcription from RNA polymerase II promoter;2.76465083316098e-10!GO:0005789;endoplasmic reticulum membrane;3.21760698894343e-10!GO:0051301;cell division;3.21843149168462e-10!GO:0003743;translation initiation factor activity;3.49391204364943e-10!GO:0009259;ribonucleotide metabolic process;7.87577417702582e-10!GO:0008565;protein transporter activity;8.56532107311815e-10!GO:0048519;negative regulation of biological process;1.05148023967927e-09!GO:0050794;regulation of cellular process;1.08112254491259e-09!GO:0016604;nuclear body;1.11665684847818e-09!GO:0006413;translational initiation;1.30507458022728e-09!GO:0006399;tRNA metabolic process;1.39631018117937e-09!GO:0017038;protein import;1.8834224378163e-09!GO:0008639;small protein conjugating enzyme activity;1.99547300716317e-09!GO:0006163;purine nucleotide metabolic process;2.53897608792533e-09!GO:0006260;DNA replication;2.60806973740339e-09!GO:0005643;nuclear pore;3.90081393804651e-09!GO:0009150;purine ribonucleotide metabolic process;3.90180709780268e-09!GO:0065004;protein-DNA complex assembly;3.93259704259416e-09!GO:0004842;ubiquitin-protein ligase activity;3.99636250594039e-09!GO:0019787;small conjugating protein ligase activity;4.77774831773952e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.22980740035932e-09!GO:0003924;GTPase activity;5.39104073662967e-09!GO:0006281;DNA repair;6.14563173067864e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.42566720833365e-09!GO:0006446;regulation of translational initiation;9.94670615798712e-09!GO:0065002;intracellular protein transport across a membrane;1.11095129110268e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.20660185375989e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.20660185375989e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.20660185375989e-08!GO:0030120;vesicle coat;1.22058599031479e-08!GO:0030662;coated vesicle membrane;1.22058599031479e-08!GO:0006333;chromatin assembly or disassembly;1.56613934487537e-08!GO:0009719;response to endogenous stimulus;1.59502527849037e-08!GO:0006364;rRNA processing;1.70587034172209e-08!GO:0006461;protein complex assembly;1.72582989870063e-08!GO:0000279;M phase;1.73339296260488e-08!GO:0005788;endoplasmic reticulum lumen;1.81163391675145e-08!GO:0009260;ribonucleotide biosynthetic process;1.84695203419305e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.90645583559465e-08!GO:0006164;purine nucleotide biosynthetic process;2.21249826483708e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.21417253747275e-08!GO:0009141;nucleoside triphosphate metabolic process;2.39676017780377e-08!GO:0043038;amino acid activation;2.88932007487541e-08!GO:0006418;tRNA aminoacylation for protein translation;2.88932007487541e-08!GO:0043039;tRNA aminoacylation;2.88932007487541e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.09120959690338e-08!GO:0016881;acid-amino acid ligase activity;3.19942943361506e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.26581812208413e-08!GO:0042623;ATPase activity, coupled;3.81115971133023e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.36577038674347e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.36577038674347e-08!GO:0000785;chromatin;4.96161508864604e-08!GO:0031324;negative regulation of cellular metabolic process;5.20681401038179e-08!GO:0016072;rRNA metabolic process;5.55836818874585e-08!GO:0005768;endosome;5.93609040868715e-08!GO:0044431;Golgi apparatus part;5.93609040868715e-08!GO:0009060;aerobic respiration;6.10678271942582e-08!GO:0043067;regulation of programmed cell death;6.23559083659851e-08!GO:0046930;pore complex;8.258387528653e-08!GO:0042981;regulation of apoptosis;8.47568070601433e-08!GO:0030532;small nuclear ribonucleoprotein complex;8.47568070601433e-08!GO:0016887;ATPase activity;8.80085461174166e-08!GO:0007005;mitochondrion organization and biogenesis;9.47173298146626e-08!GO:0045333;cellular respiration;9.77358526819627e-08!GO:0016607;nuclear speck;1.13439817955717e-07!GO:0048475;coated membrane;1.13525332853541e-07!GO:0030117;membrane coat;1.13525332853541e-07!GO:0006334;nucleosome assembly;1.21619227264334e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.34789578979777e-07!GO:0015986;ATP synthesis coupled proton transport;1.67871908723785e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.67871908723785e-07!GO:0050789;regulation of biological process;1.68525882249674e-07!GO:0016740;transferase activity;1.82673892013753e-07!GO:0009056;catabolic process;2.11832094880242e-07!GO:0046034;ATP metabolic process;2.29655332862006e-07!GO:0051188;cofactor biosynthetic process;2.30597645393803e-07!GO:0015630;microtubule cytoskeleton;2.40185266297644e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.92351299991795e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.92351299991795e-07!GO:0031497;chromatin assembly;2.99658595376341e-07!GO:0051246;regulation of protein metabolic process;3.10973276179638e-07!GO:0005667;transcription factor complex;4.16122209336942e-07!GO:0003714;transcription corepressor activity;5.82028540694815e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.0223240514271e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.0223240514271e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.86977024437275e-07!GO:0008361;regulation of cell size;7.80167851343928e-07!GO:0016049;cell growth;9.12971583779706e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.02846874700416e-06!GO:0005525;GTP binding;1.0637986461735e-06!GO:0009892;negative regulation of metabolic process;1.07262754549817e-06!GO:0043069;negative regulation of programmed cell death;1.07262754549817e-06!GO:0006099;tricarboxylic acid cycle;1.07262754549817e-06!GO:0046356;acetyl-CoA catabolic process;1.07262754549817e-06!GO:0019829;cation-transporting ATPase activity;1.09078371529655e-06!GO:0016564;transcription repressor activity;1.2673130695449e-06!GO:0004386;helicase activity;1.29819329691839e-06!GO:0006403;RNA localization;1.3972352097439e-06!GO:0045786;negative regulation of progression through cell cycle;1.48802220039444e-06!GO:0003697;single-stranded DNA binding;1.49277882809293e-06!GO:0009117;nucleotide metabolic process;1.61011923024865e-06!GO:0007010;cytoskeleton organization and biogenesis;1.63365553146159e-06!GO:0006793;phosphorus metabolic process;1.66995963301175e-06!GO:0006796;phosphate metabolic process;1.66995963301175e-06!GO:0008026;ATP-dependent helicase activity;1.70229907294675e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.70229907294675e-06!GO:0032446;protein modification by small protein conjugation;1.87001582401304e-06!GO:0050657;nucleic acid transport;1.92163679715839e-06!GO:0051236;establishment of RNA localization;1.92163679715839e-06!GO:0050658;RNA transport;1.92163679715839e-06!GO:0051170;nuclear import;2.01225111342972e-06!GO:0031252;leading edge;2.0960145421795e-06!GO:0016567;protein ubiquitination;2.25882783719167e-06!GO:0031988;membrane-bound vesicle;2.39653298608296e-06!GO:0006606;protein import into nucleus;2.45807556176119e-06!GO:0016491;oxidoreductase activity;2.68566050434581e-06!GO:0051187;cofactor catabolic process;2.70679020034993e-06!GO:0043066;negative regulation of apoptosis;2.71740807930735e-06!GO:0051329;interphase of mitotic cell cycle;2.80619981307979e-06!GO:0006754;ATP biosynthetic process;2.95848492992847e-06!GO:0006753;nucleoside phosphate metabolic process;2.95848492992847e-06!GO:0005798;Golgi-associated vesicle;3.11396785608499e-06!GO:0030036;actin cytoskeleton organization and biogenesis;3.14780487043229e-06!GO:0009109;coenzyme catabolic process;3.15159206989748e-06!GO:0006084;acetyl-CoA metabolic process;3.3216871975488e-06!GO:0001558;regulation of cell growth;3.70913013957608e-06!GO:0016568;chromatin modification;3.79394361188902e-06!GO:0000139;Golgi membrane;4.16150708336635e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.32743929123216e-06!GO:0051325;interphase;4.469478957072e-06!GO:0043566;structure-specific DNA binding;5.21145873534867e-06!GO:0006916;anti-apoptosis;5.58622184910317e-06!GO:0045259;proton-transporting ATP synthase complex;5.63284208077848e-06!GO:0000151;ubiquitin ligase complex;5.98468618746509e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.45715427587579e-06!GO:0016563;transcription activator activity;6.58125119941379e-06!GO:0016481;negative regulation of transcription;7.25843901656729e-06!GO:0005762;mitochondrial large ribosomal subunit;7.50171246243157e-06!GO:0000315;organellar large ribosomal subunit;7.50171246243157e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.83792607461185e-06!GO:0006752;group transfer coenzyme metabolic process;7.99105582163789e-06!GO:0032561;guanyl ribonucleotide binding;8.61703088242069e-06!GO:0019001;guanyl nucleotide binding;8.61703088242069e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.79433473119913e-06!GO:0008092;cytoskeletal protein binding;9.18198899672051e-06!GO:0000245;spliceosome assembly;1.00091090900962e-05!GO:0016310;phosphorylation;1.05139032923658e-05!GO:0005819;spindle;1.06209444285115e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.06774568762182e-05!GO:0009108;coenzyme biosynthetic process;1.11223765492049e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.17664422370969e-05!GO:0016853;isomerase activity;1.22264777425239e-05!GO:0044440;endosomal part;1.25946893276215e-05!GO:0010008;endosome membrane;1.25946893276215e-05!GO:0031982;vesicle;1.40056730634663e-05!GO:0005905;coated pit;1.40226471037561e-05!GO:0031410;cytoplasmic vesicle;1.5253501709087e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.62647308310296e-05!GO:0043623;cellular protein complex assembly;1.77466325417028e-05!GO:0030029;actin filament-based process;2.074627660674e-05!GO:0016779;nucleotidyltransferase activity;2.17608410956069e-05!GO:0030133;transport vesicle;2.68974239401011e-05!GO:0005770;late endosome;2.70500998950593e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.82243582327915e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.07359782787347e-05!GO:0006613;cotranslational protein targeting to membrane;3.11378186161323e-05!GO:0030867;rough endoplasmic reticulum membrane;3.20137715295345e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.64090404330414e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.78893980303552e-05!GO:0033116;ER-Golgi intermediate compartment membrane;4.53085823958566e-05!GO:0003713;transcription coactivator activity;4.7004791290145e-05!GO:0051028;mRNA transport;5.1317680940024e-05!GO:0045454;cell redox homeostasis;5.60357039131005e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.98280006319812e-05!GO:0019899;enzyme binding;6.00893489239023e-05!GO:0004298;threonine endopeptidase activity;6.16618013587196e-05!GO:0005769;early endosome;6.43103897623869e-05!GO:0048522;positive regulation of cellular process;7.26828564492694e-05!GO:0019867;outer membrane;7.58313213576432e-05!GO:0003899;DNA-directed RNA polymerase activity;8.5995735280835e-05!GO:0005048;signal sequence binding;9.30749166363453e-05!GO:0051427;hormone receptor binding;0.000108467983069305!GO:0031968;organelle outer membrane;0.000108467983069305!GO:0044262;cellular carbohydrate metabolic process;0.000110242521373077!GO:0007264;small GTPase mediated signal transduction;0.000120937918574132!GO:0005813;centrosome;0.000120953558051006!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000122443222467341!GO:0016859;cis-trans isomerase activity;0.000134592251819307!GO:0008654;phospholipid biosynthetic process;0.000143937117843775!GO:0051789;response to protein stimulus;0.000178289173847311!GO:0006986;response to unfolded protein;0.000178289173847311!GO:0005815;microtubule organizing center;0.0001868853427677!GO:0019222;regulation of metabolic process;0.000187354523258415!GO:0003724;RNA helicase activity;0.000192956621041488!GO:0005773;vacuole;0.000207595460501668!GO:0005741;mitochondrial outer membrane;0.000207595460501668!GO:0007243;protein kinase cascade;0.000208038500642113!GO:0005885;Arp2/3 protein complex;0.000226091015048932!GO:0035257;nuclear hormone receptor binding;0.000226974035679557!GO:0040008;regulation of growth;0.000242118304206151!GO:0065007;biological regulation;0.000297750399635155!GO:0016787;hydrolase activity;0.000313107321919495!GO:0006091;generation of precursor metabolites and energy;0.00031639352534595!GO:0030663;COPI coated vesicle membrane;0.000340192060663262!GO:0030126;COPI vesicle coat;0.000340192060663262!GO:0006839;mitochondrial transport;0.000344300201878621!GO:0000786;nucleosome;0.000460093592054269!GO:0004576;oligosaccharyl transferase activity;0.000460093592054269!GO:0008250;oligosaccharyl transferase complex;0.000495732028636394!GO:0000059;protein import into nucleus, docking;0.000545976026501382!GO:0000314;organellar small ribosomal subunit;0.000551443827467018!GO:0005763;mitochondrial small ribosomal subunit;0.000551443827467018!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000561078161309591!GO:0006261;DNA-dependent DNA replication;0.000595808714256816!GO:0051252;regulation of RNA metabolic process;0.000612790179826992!GO:0043021;ribonucleoprotein binding;0.000625172386463778!GO:0007051;spindle organization and biogenesis;0.000665435752840672!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000671891657196851!GO:0045892;negative regulation of transcription, DNA-dependent;0.000685761217044942!GO:0048468;cell development;0.000687025395186587!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000720127992135095!GO:0043681;protein import into mitochondrion;0.000735941014810972!GO:0006626;protein targeting to mitochondrion;0.000757145759813415!GO:0005791;rough endoplasmic reticulum;0.000787482077932904!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000794406429799591!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000809088829951282!GO:0030132;clathrin coat of coated pit;0.000876501086495777!GO:0030137;COPI-coated vesicle;0.000880977918881431!GO:0030880;RNA polymerase complex;0.000904908660772442!GO:0005657;replication fork;0.000977347760361003!GO:0051168;nuclear export;0.00098649602726788!GO:0000082;G1/S transition of mitotic cell cycle;0.00102267662419622!GO:0048471;perinuclear region of cytoplasm;0.00102885025345733!GO:0016044;membrane organization and biogenesis;0.00104040847585781!GO:0051920;peroxiredoxin activity;0.00106298239922955!GO:0007050;cell cycle arrest;0.00117102512853176!GO:0065009;regulation of a molecular function;0.00117793127012407!GO:0008094;DNA-dependent ATPase activity;0.00120685640089537!GO:0005874;microtubule;0.00121288223499645!GO:0007006;mitochondrial membrane organization and biogenesis;0.00122494500976462!GO:0000323;lytic vacuole;0.00122849783768688!GO:0005764;lysosome;0.00122849783768688!GO:0030658;transport vesicle membrane;0.00124404825387284!GO:0019843;rRNA binding;0.00126423276526596!GO:0043284;biopolymer biosynthetic process;0.00127290273606328!GO:0033673;negative regulation of kinase activity;0.00127290273606328!GO:0006469;negative regulation of protein kinase activity;0.00127290273606328!GO:0000075;cell cycle checkpoint;0.001275268508004!GO:0018196;peptidyl-asparagine modification;0.00128272221613463!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00128272221613463!GO:0042802;identical protein binding;0.00136987430461761!GO:0006414;translational elongation;0.00139923520021469!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00141923680483831!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00145449312613315!GO:0006612;protein targeting to membrane;0.0014935164688295!GO:0001726;ruffle;0.00151557677950868!GO:0051348;negative regulation of transferase activity;0.00153726094975504!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00161036934394828!GO:0031072;heat shock protein binding;0.00176046814327458!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00180979934164381!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00180979934164381!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00180979934164381!GO:0043488;regulation of mRNA stability;0.00185780204859556!GO:0043487;regulation of RNA stability;0.00185780204859556!GO:0045941;positive regulation of transcription;0.00193329621853261!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00193512854529335!GO:0009165;nucleotide biosynthetic process;0.00206579869313065!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00208070780262897!GO:0000428;DNA-directed RNA polymerase complex;0.00208070780262897!GO:0035258;steroid hormone receptor binding;0.00219742557462207!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0022913366348173!GO:0004674;protein serine/threonine kinase activity;0.00239970429838134!GO:0030134;ER to Golgi transport vesicle;0.0024674019368222!GO:0030176;integral to endoplasmic reticulum membrane;0.00247684219038478!GO:0046474;glycerophospholipid biosynthetic process;0.00250712283129198!GO:0008186;RNA-dependent ATPase activity;0.00262879119583931!GO:0008139;nuclear localization sequence binding;0.00285572466825863!GO:0006891;intra-Golgi vesicle-mediated transport;0.00305062988926672!GO:0030118;clathrin coat;0.00305172000462145!GO:0000775;chromosome, pericentric region;0.00308973742924466!GO:0045893;positive regulation of transcription, DNA-dependent;0.00308973742924466!GO:0030027;lamellipodium;0.00326680525157919!GO:0015631;tubulin binding;0.0033410537906291!GO:0003729;mRNA binding;0.00342002196231223!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00345766565166522!GO:0030521;androgen receptor signaling pathway;0.00364949314535636!GO:0030127;COPII vesicle coat;0.00376159732216126!GO:0012507;ER to Golgi transport vesicle membrane;0.00376159732216126!GO:0048487;beta-tubulin binding;0.00380043279914402!GO:0003684;damaged DNA binding;0.00391616684627555!GO:0005637;nuclear inner membrane;0.00411323444956726!GO:0030660;Golgi-associated vesicle membrane;0.00411405088661093!GO:0051087;chaperone binding;0.00419501697870669!GO:0006383;transcription from RNA polymerase III promoter;0.00419501697870669!GO:0017166;vinculin binding;0.0041951294056286!GO:0008033;tRNA processing;0.00431118656963002!GO:0003682;chromatin binding;0.00438119273645787!GO:0005684;U2-dependent spliceosome;0.00469310595118992!GO:0006740;NADPH regeneration;0.00469724700794985!GO:0006098;pentose-phosphate shunt;0.00469724700794985!GO:0003746;translation elongation factor activity;0.00509943325499692!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00510793291917771!GO:0044452;nucleolar part;0.00520274744728085!GO:0006509;membrane protein ectodomain proteolysis;0.0053125662838003!GO:0033619;membrane protein proteolysis;0.0053125662838003!GO:0008022;protein C-terminus binding;0.00545293435338301!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00559505717439425!GO:0046483;heterocycle metabolic process;0.0060977339945247!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00610538000118002!GO:0004004;ATP-dependent RNA helicase activity;0.00642143790952154!GO:0016197;endosome transport;0.00648354765984751!GO:0048500;signal recognition particle;0.00648354765984751!GO:0016363;nuclear matrix;0.00657869852611043!GO:0048518;positive regulation of biological process;0.00686039757879431!GO:0006595;polyamine metabolic process;0.00689181209848204!GO:0051128;regulation of cellular component organization and biogenesis;0.00695049393087853!GO:0003678;DNA helicase activity;0.00728373264843494!GO:0045792;negative regulation of cell size;0.00744413326301005!GO:0003779;actin binding;0.00750623173913752!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00763343544899594!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00763343544899594!GO:0031543;peptidyl-proline dioxygenase activity;0.00767679308940255!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00846239510471214!GO:0006979;response to oxidative stress;0.00857425908196784!GO:0030308;negative regulation of cell growth;0.00862802897539472!GO:0016126;sterol biosynthetic process;0.00890705775710491!GO:0031124;mRNA 3'-end processing;0.00890705775710491!GO:0008180;signalosome;0.00899026515154922!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00910661573759599!GO:0000049;tRNA binding;0.00931176265963129!GO:0005862;muscle thin filament tropomyosin;0.0101140375941243!GO:0030125;clathrin vesicle coat;0.0104985874955543!GO:0030665;clathrin coated vesicle membrane;0.0104985874955543!GO:0003690;double-stranded DNA binding;0.0105985900847772!GO:0006352;transcription initiation;0.0105985900847772!GO:0006007;glucose catabolic process;0.0107051550815746!GO:0016408;C-acyltransferase activity;0.0107314611344537!GO:0031323;regulation of cellular metabolic process;0.0108984871628509!GO:0006402;mRNA catabolic process;0.0109453594972845!GO:0031529;ruffle organization and biogenesis;0.0109625717296541!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0111841336702149!GO:0019798;procollagen-proline dioxygenase activity;0.011255517987087!GO:0007088;regulation of mitosis;0.0113004580398242!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0113033758850926!GO:0046467;membrane lipid biosynthetic process;0.0113033758850926!GO:0008287;protein serine/threonine phosphatase complex;0.0113652022920165!GO:0050681;androgen receptor binding;0.0115435806122819!GO:0008168;methyltransferase activity;0.0116487811114001!GO:0005869;dynactin complex;0.0116487811114001!GO:0005876;spindle microtubule;0.0120062601503268!GO:0032508;DNA duplex unwinding;0.0122009333495807!GO:0032392;DNA geometric change;0.0122009333495807!GO:0008312;7S RNA binding;0.0122125008904901!GO:0019206;nucleoside kinase activity;0.0122484014590643!GO:0046519;sphingoid metabolic process;0.0125273186965401!GO:0006892;post-Golgi vesicle-mediated transport;0.0125717677393861!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0127786908931067!GO:0006082;organic acid metabolic process;0.0127786908931067!GO:0006520;amino acid metabolic process;0.012799761931903!GO:0006611;protein export from nucleus;0.0130910550116902!GO:0019752;carboxylic acid metabolic process;0.0130910550116902!GO:0016741;transferase activity, transferring one-carbon groups;0.0131537283084938!GO:0045936;negative regulation of phosphate metabolic process;0.0132202045319606!GO:0003711;transcription elongation regulator activity;0.0133047600205369!GO:0005832;chaperonin-containing T-complex;0.0133721908579739!GO:0051287;NAD binding;0.0135036955396672!GO:0030119;AP-type membrane coat adaptor complex;0.0135036955396672!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0138765694387619!GO:0015399;primary active transmembrane transporter activity;0.0138765694387619!GO:0000902;cell morphogenesis;0.0138765694387619!GO:0032989;cellular structure morphogenesis;0.0138765694387619!GO:0040029;regulation of gene expression, epigenetic;0.0138765694387619!GO:0006350;transcription;0.0138765694387619!GO:0043022;ribosome binding;0.0145777362073751!GO:0031418;L-ascorbic acid binding;0.0147063263900825!GO:0008601;protein phosphatase type 2A regulator activity;0.0147260354732159!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0148219003574498!GO:0045047;protein targeting to ER;0.0148219003574498!GO:0043433;negative regulation of transcription factor activity;0.0148219003574498!GO:0008632;apoptotic program;0.0149545699271335!GO:0008047;enzyme activator activity;0.0151891646529942!GO:0031902;late endosome membrane;0.0152776423651035!GO:0030518;steroid hormone receptor signaling pathway;0.0155151880507275!GO:0006607;NLS-bearing substrate import into nucleus;0.0155151880507275!GO:0005665;DNA-directed RNA polymerase II, core complex;0.015641052153756!GO:0051101;regulation of DNA binding;0.015641052153756!GO:0016301;kinase activity;0.0159877331937304!GO:0030041;actin filament polymerization;0.0161184071168545!GO:0015992;proton transport;0.0161424638720751!GO:0045045;secretory pathway;0.016225569788729!GO:0030659;cytoplasmic vesicle membrane;0.016256922807214!GO:0006695;cholesterol biosynthetic process;0.0164775001184217!GO:0007265;Ras protein signal transduction;0.0165808091703765!GO:0030145;manganese ion binding;0.0165829416148666!GO:0004177;aminopeptidase activity;0.0171246245360352!GO:0050790;regulation of catalytic activity;0.0176198940600952!GO:0000910;cytokinesis;0.0176836435597053!GO:0006401;RNA catabolic process;0.0179185377142077!GO:0043065;positive regulation of apoptosis;0.017959035791725!GO:0006818;hydrogen transport;0.017959035791725!GO:0007040;lysosome organization and biogenesis;0.0184201650116481!GO:0046489;phosphoinositide biosynthetic process;0.0184417033416506!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0185032526558838!GO:0006268;DNA unwinding during replication;0.0186332029512575!GO:0008154;actin polymerization and/or depolymerization;0.0186454844025565!GO:0007093;mitotic cell cycle checkpoint;0.0187533088977862!GO:0006778;porphyrin metabolic process;0.0187533088977862!GO:0033013;tetrapyrrole metabolic process;0.0187533088977862!GO:0031901;early endosome membrane;0.0188556217632008!GO:0031625;ubiquitin protein ligase binding;0.0197463037245316!GO:0000159;protein phosphatase type 2A complex;0.0199367244067088!GO:0019318;hexose metabolic process;0.0199367244067088!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0199988941699424!GO:0015002;heme-copper terminal oxidase activity;0.0199988941699424!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0199988941699424!GO:0004129;cytochrome-c oxidase activity;0.0199988941699424!GO:0022890;inorganic cation transmembrane transporter activity;0.0202474882074226!GO:0048144;fibroblast proliferation;0.0203595681115839!GO:0048145;regulation of fibroblast proliferation;0.0203595681115839!GO:0008652;amino acid biosynthetic process;0.0203761198831759!GO:0030833;regulation of actin filament polymerization;0.0206415154365321!GO:0006220;pyrimidine nucleotide metabolic process;0.0208364939292174!GO:0043068;positive regulation of programmed cell death;0.0208967033193145!GO:0005856;cytoskeleton;0.0209855673704305!GO:0030131;clathrin adaptor complex;0.0211525564379499!GO:0051098;regulation of binding;0.0211909932835636!GO:0000776;kinetochore;0.0211909932835636!GO:0006672;ceramide metabolic process;0.0214086184137325!GO:0000792;heterochromatin;0.0215465929045686!GO:0008286;insulin receptor signaling pathway;0.02170699885058!GO:0005996;monosaccharide metabolic process;0.0229026810084107!GO:0006302;double-strand break repair;0.0229992885417827!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0232877900935188!GO:0006338;chromatin remodeling;0.0234865796107836!GO:0007346;regulation of progression through mitotic cell cycle;0.02376626782202!GO:0006354;RNA elongation;0.0241628370112964!GO:0030496;midbody;0.0244461715195752!GO:0005096;GTPase activator activity;0.0244628112996414!GO:0007033;vacuole organization and biogenesis;0.0246791517820473!GO:0004003;ATP-dependent DNA helicase activity;0.025748344642687!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0258900928013294!GO:0051540;metal cluster binding;0.025990348553776!GO:0051536;iron-sulfur cluster binding;0.025990348553776!GO:0018193;peptidyl-amino acid modification;0.0262392354462989!GO:0043407;negative regulation of MAP kinase activity;0.0262828115013777!GO:0008538;proteasome activator activity;0.0273622071463687!GO:0007052;mitotic spindle organization and biogenesis;0.0279245572835593!GO:0006405;RNA export from nucleus;0.0279245572835593!GO:0004527;exonuclease activity;0.0281354722313192!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0281354722313192!GO:0033043;regulation of organelle organization and biogenesis;0.0281354722313192!GO:0050662;coenzyme binding;0.028375429004371!GO:0048146;positive regulation of fibroblast proliferation;0.0284691083835124!GO:0051338;regulation of transferase activity;0.0284691083835124!GO:0000287;magnesium ion binding;0.0289447547982906!GO:0009967;positive regulation of signal transduction;0.029220564574007!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0293671502303107!GO:0003756;protein disulfide isomerase activity;0.0299090756485643!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0299090756485643!GO:0005801;cis-Golgi network;0.0299709086115133!GO:0006739;NADP metabolic process;0.0299724042505008!GO:0006650;glycerophospholipid metabolic process;0.0301550419872124!GO:0009303;rRNA transcription;0.0301562686966425!GO:0045926;negative regulation of growth;0.030199974781568!GO:0042326;negative regulation of phosphorylation;0.0306304337844122!GO:0008610;lipid biosynthetic process;0.0306418417091913!GO:0006779;porphyrin biosynthetic process;0.0306418417091913!GO:0033014;tetrapyrrole biosynthetic process;0.0306418417091913!GO:0043086;negative regulation of catalytic activity;0.0313424940770899!GO:0007017;microtubule-based process;0.0316709822605076!GO:0043189;H4/H2A histone acetyltransferase complex;0.0318638827910953!GO:0006376;mRNA splice site selection;0.0319153574697647!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0319153574697647!GO:0000096;sulfur amino acid metabolic process;0.0321201521737273!GO:0051059;NF-kappaB binding;0.0321201521737273!GO:0045334;clathrin-coated endocytic vesicle;0.0322469469420558!GO:0000339;RNA cap binding;0.0322962502557254!GO:0016251;general RNA polymerase II transcription factor activity;0.0324603328605027!GO:0006289;nucleotide-excision repair;0.032830883988594!GO:0030508;thiol-disulfide exchange intermediate activity;0.0334092727767688!GO:0006144;purine base metabolic process;0.0334101112022439!GO:0000118;histone deacetylase complex;0.0334418476183199!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.03379700695179!GO:0043414;biopolymer methylation;0.033841837743528!GO:0005669;transcription factor TFIID complex;0.0338677879195515!GO:0016272;prefoldin complex;0.0339198943808649!GO:0051539;4 iron, 4 sulfur cluster binding;0.0345244310326791!GO:0022408;negative regulation of cell-cell adhesion;0.0346338148104585!GO:0050178;phenylpyruvate tautomerase activity;0.0347187722841507!GO:0009112;nucleobase metabolic process;0.0347761524186175!GO:0042168;heme metabolic process;0.0351028965357622!GO:0009116;nucleoside metabolic process;0.0351028965357622!GO:0046426;negative regulation of JAK-STAT cascade;0.0354002337478705!GO:0015036;disulfide oxidoreductase activity;0.035570208508681!GO:0000209;protein polyubiquitination;0.0356119345868404!GO:0044433;cytoplasmic vesicle part;0.0356532675207743!GO:0007030;Golgi organization and biogenesis;0.035905191843001!GO:0030911;TPR domain binding;0.0366258331769702!GO:0007242;intracellular signaling cascade;0.036717288244017!GO:0007021;tubulin folding;0.0369447308306888!GO:0005784;translocon complex;0.0369447308306888!GO:0007034;vacuolar transport;0.0369546162890688!GO:0004860;protein kinase inhibitor activity;0.0373155628220516!GO:0008637;apoptotic mitochondrial changes;0.0376166308629837!GO:0016584;nucleosome positioning;0.0377967642975431!GO:0035267;NuA4 histone acetyltransferase complex;0.0381763155107392!GO:0031301;integral to organelle membrane;0.0390427152419186!GO:0031123;RNA 3'-end processing;0.0393740126475244!GO:0000123;histone acetyltransferase complex;0.0394104905686008!GO:0010468;regulation of gene expression;0.0396283923969803!GO:0033559;unsaturated fatty acid metabolic process;0.0400140555626936!GO:0006636;unsaturated fatty acid biosynthetic process;0.0400140555626936!GO:0005774;vacuolar membrane;0.0404346611787263!GO:0051052;regulation of DNA metabolic process;0.0409185291974492!GO:0030032;lamellipodium biogenesis;0.041241664617343!GO:0046822;regulation of nucleocytoplasmic transport;0.0417354976905656!GO:0001953;negative regulation of cell-matrix adhesion;0.0419495298636704!GO:0005520;insulin-like growth factor binding;0.0420051283927737!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0420051283927737!GO:0008283;cell proliferation;0.0422832160450955!GO:0006807;nitrogen compound metabolic process;0.0423960791439657!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0427942802440818!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0430968685372206!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0430968685372206!GO:0047485;protein N-terminus binding;0.0432828032926411!GO:0006897;endocytosis;0.0432828032926411!GO:0010324;membrane invagination;0.0432828032926411!GO:0016791;phosphoric monoester hydrolase activity;0.0433392627795893!GO:0035035;histone acetyltransferase binding;0.0435675193427871!GO:0008064;regulation of actin polymerization and/or depolymerization;0.043622037804539!GO:0033239;negative regulation of amine metabolic process;0.0436772423861945!GO:0045763;negative regulation of amino acid metabolic process;0.0436772423861945!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0436772423861945!GO:0043549;regulation of kinase activity;0.0436861722120989!GO:0016407;acetyltransferase activity;0.0445069027578474!GO:0006378;mRNA polyadenylation;0.0445602888965823!GO:0006284;base-excision repair;0.0447648101255942!GO:0005938;cell cortex;0.0447648101255942!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0447648101255942!GO:0010257;NADH dehydrogenase complex assembly;0.0447648101255942!GO:0033108;mitochondrial respiratory chain complex assembly;0.0447648101255942!GO:0030128;clathrin coat of endocytic vesicle;0.0447648101255942!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0447648101255942!GO:0030122;AP-2 adaptor complex;0.0447648101255942!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0451815375485726!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0451815375485726!GO:0043624;cellular protein complex disassembly;0.0466110466247797!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0473782854483013!GO:0050811;GABA receptor binding;0.0474660832516509!GO:0030522;intracellular receptor-mediated signaling pathway;0.0474660832516509!GO:0043596;nuclear replication fork;0.0475727192033377!GO:0006497;protein amino acid lipidation;0.0479354111410526!GO:0032259;methylation;0.0483084642208813!GO:0043130;ubiquitin binding;0.0483914759838031!GO:0032182;small conjugating protein binding;0.0483914759838031!GO:0031589;cell-substrate adhesion;0.0488896824334848!GO:0005521;lamin binding;0.0490308693407036!GO:0030433;ER-associated protein catabolic process;0.0494931041968327!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0494931041968327!GO:0031371;ubiquitin conjugating enzyme complex;0.0498978881203522!GO:0032507;maintenance of cellular protein localization;0.0499017780722156 | |||
|sample_id=11426 | |sample_id=11426 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=bone | |sample_tissue=bone | ||
|top_motifs=HES1:1.44261900584;SRF:1.39685761357;GLI1..3:1.35214541342;HOX{A5,B5}:1.23257941372;GTF2A1,2:1.23110342967;TFDP1:1.18744347963;ESR1:1.03719123657;MTE{core}:1.02777117039;TFAP4:1.02049977136;ZIC1..3:1.0135103478;PAX8:0.962801616115;TEAD1:0.945326044933;GFI1B:0.902986386081;TFAP2B:0.851528902598;GZF1:0.804058005585;EGR1..3:0.778868244821;TFAP2{A,C}:0.778690328109;EN1,2:0.774316191196;ZNF148:0.764476132415;HIC1:0.762245210526;XCPE1{core}:0.761002335616;TAL1_TCF{3,4,12}:0.743289193208;NR3C1:0.688859669233;MAFB:0.669137810759;ATF6:0.665959325732;ZNF238:0.661444224257;NFATC1..3:0.648287830151;PAX1,9:0.647445259772;UFEwm:0.643642135824;IKZF1:0.627267331974;SOX17:0.589527388729;RXR{A,B,G}:0.578268703554;ZBTB6:0.557731605507;TFCP2:0.554651001665;TBP:0.544919751866;GFI1:0.506738863062;PPARG:0.483694999156;GTF2I:0.469924760508;NFE2L1:0.427783578742;GCM1,2:0.424518036033;HAND1,2:0.415397057134;STAT5{A,B}:0.41378665383;EBF1:0.408712602233;HIF1A:0.408170911707;MAZ:0.401187653561;LEF1_TCF7_TCF7L1,2:0.393923525365;NANOG{mouse}:0.388848227153;TLX1..3_NFIC{dimer}:0.388486911772;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.386092093007;NR5A1,2:0.383637040882;POU3F1..4:0.382741932213;RXRA_VDR{dimer}:0.378376578474;PATZ1:0.36255976763;TBX4,5:0.357975338056;MZF1:0.351533596896;ALX4:0.343444603957;LHX3,4:0.318117434968;NKX2-3_NKX2-5:0.316874792399;TP53:0.303731696893;BACH2:0.285344568575;PRDM1:0.266063871132;E2F1..5:0.258166421069;SP1:0.253809478204;POU5F1:0.236679879452;MYB:0.216488617198;XBP1:0.208909172575;NFE2L2:0.208721997655;KLF4:0.208155760493;ZNF143:0.192442998095;RREB1:0.192075801352;FOS_FOS{B,L1}_JUN{B,D}:0.188627056574;NFY{A,B,C}:0.186313857201;SMAD1..7,9:0.169588773679;NR6A1:0.154633179786;CDC5L:0.152899004861;MTF1:0.152511397413;ZNF423:0.148855970929;SOX{8,9,10}:0.140428676101;ZNF384:0.130888525594;EVI1:0.125316791566;FOXL1:0.11131768883;FOXA2:0.107128222019;MED-1{core}:0.105070022557;MEF2{A,B,C,D}:0.0959613549928;NRF1:0.0947411107108;POU2F1..3:0.0903979320703;ELK1,4_GABP{A,B1}:0.0833640677904;PAX5:0.0781411028842;FOSL2:0.0745768298935;MYBL2:0.0708814083603;HSF1,2:0.0692371979914;BREu{core}:0.0691405020824;ONECUT1,2:0.0582517774786;CREB1:0.0204046743705;HNF1A:0.0159513336978;PRRX1,2:0.0139247932238;NANOG:0.0123823365156;ZFP161:0.0111056222529;JUN:0.00850017634265;SPZ1:0.00297504254665;HMX1:-0.00695362467975;REST:-0.0296456966089;HLF:-0.0301963205542;PDX1:-0.0427206996089;YY1:-0.0529887833718;SOX2:-0.0540887566914;PBX1:-0.0589845881602;RUNX1..3:-0.0632253983285;TOPORS:-0.0802269322698;HOX{A4,D4}:-0.0913559223585;NFE2:-0.0926556069605;NFIX:-0.0943553043476;AHR_ARNT_ARNT2:-0.108821873692;STAT2,4,6:-0.121165200738;NKX2-2,8:-0.129604263551;MYFfamily:-0.130036250072;PAX3,7:-0.142550431367;GATA4:-0.171579296927;NHLH1,2:-0.200094797871;bHLH_family:-0.214673560462;RFX1:-0.230298897315;VSX1,2:-0.232525579092;ESRRA:-0.250125054933;HMGA1,2:-0.253301682625;ADNP_IRX_SIX_ZHX:-0.258875195001;AR:-0.279453463556;NR1H4:-0.291375114038;CEBPA,B_DDIT3:-0.300864044293;OCT4_SOX2{dimer}:-0.301318697051;NFKB1_REL_RELA:-0.320783346287;PAX2:-0.323126435762;POU6F1:-0.374791781368;ARID5B:-0.385073469675;NKX3-1:-0.387938137773;HBP1_HMGB_SSRP1_UBTF:-0.390090066105;POU1F1:-0.390398005786;NKX3-2:-0.400350005967;HNF4A_NR2F1,2:-0.412122735431;PAX4:-0.419606302475;DBP:-0.429054329922;ATF4:-0.436859077347;AIRE:-0.440585373329;HOXA9_MEIS1:-0.458970906679;CRX:-0.464022643126;EP300:-0.468663369018;ATF5_CREB3:-0.491526081008;ETS1,2:-0.522983370015;GATA6:-0.53460689096;ATF2:-0.543357403998;FOX{F1,F2,J1}:-0.543725723485;SPI1:-0.582651511972;TGIF1:-0.588321455313;SPIB:-0.610506814455;RORA:-0.624507092353;HOX{A6,A7,B6,B7}:-0.629157891917;PAX6:-0.652609496658;LMO2:-0.653093541974;ELF1,2,4:-0.664132959393;SNAI1..3:-0.679053168313;SOX5:-0.686708278201;DMAP1_NCOR{1,2}_SMARC:-0.707245960268;T:-0.725889421172;NFIL3:-0.735222103262;CUX2:-0.76206160469;SREBF1,2:-0.797505604992;FOXM1:-0.799952709682;FOX{I1,J2}:-0.813464223241;ZEB1:-0.819697098719;FOXN1:-0.823098551128;MYOD1:-0.826201623373;FOXQ1:-0.84204056816;TLX2:-0.852456163263;STAT1,3:-0.857856669978;RFX2..5_RFXANK_RFXAP:-0.866342399441;IRF1,2:-0.875460142465;NKX2-1,4:-0.880417847821;FOX{D1,D2}:-0.907931981689;PITX1..3:-0.947171476513;FOXO1,3,4:-0.985230448285;BPTF:-1.00666187109;IKZF2:-1.03250591217;NKX6-1,2:-1.05675919093;FOXP3:-1.07868951296;IRF7:-1.11838804363;ZBTB16:-1.13427673428;TEF:-1.15488936087;CDX1,2,4:-1.27720610405;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.39087372948;FOXP1:-1.45267630614;RBPJ:-1.59996110044;ALX1:-1.61409833178;FOXD3:-1.62272262053 | |top_motifs=HES1:1.44261900584;SRF:1.39685761357;GLI1..3:1.35214541342;HOX{A5,B5}:1.23257941372;GTF2A1,2:1.23110342967;TFDP1:1.18744347963;ESR1:1.03719123657;MTE{core}:1.02777117039;TFAP4:1.02049977136;ZIC1..3:1.0135103478;PAX8:0.962801616115;TEAD1:0.945326044933;GFI1B:0.902986386081;TFAP2B:0.851528902598;GZF1:0.804058005585;EGR1..3:0.778868244821;TFAP2{A,C}:0.778690328109;EN1,2:0.774316191196;ZNF148:0.764476132415;HIC1:0.762245210526;XCPE1{core}:0.761002335616;TAL1_TCF{3,4,12}:0.743289193208;NR3C1:0.688859669233;MAFB:0.669137810759;ATF6:0.665959325732;ZNF238:0.661444224257;NFATC1..3:0.648287830151;PAX1,9:0.647445259772;UFEwm:0.643642135824;IKZF1:0.627267331974;SOX17:0.589527388729;RXR{A,B,G}:0.578268703554;ZBTB6:0.557731605507;TFCP2:0.554651001665;TBP:0.544919751866;GFI1:0.506738863062;PPARG:0.483694999156;GTF2I:0.469924760508;NFE2L1:0.427783578742;GCM1,2:0.424518036033;HAND1,2:0.415397057134;STAT5{A,B}:0.41378665383;EBF1:0.408712602233;HIF1A:0.408170911707;MAZ:0.401187653561;LEF1_TCF7_TCF7L1,2:0.393923525365;NANOG{mouse}:0.388848227153;TLX1..3_NFIC{dimer}:0.388486911772;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.386092093007;NR5A1,2:0.383637040882;POU3F1..4:0.382741932213;RXRA_VDR{dimer}:0.378376578474;PATZ1:0.36255976763;TBX4,5:0.357975338056;MZF1:0.351533596896;ALX4:0.343444603957;LHX3,4:0.318117434968;NKX2-3_NKX2-5:0.316874792399;TP53:0.303731696893;BACH2:0.285344568575;PRDM1:0.266063871132;E2F1..5:0.258166421069;SP1:0.253809478204;POU5F1:0.236679879452;MYB:0.216488617198;XBP1:0.208909172575;NFE2L2:0.208721997655;KLF4:0.208155760493;ZNF143:0.192442998095;RREB1:0.192075801352;FOS_FOS{B,L1}_JUN{B,D}:0.188627056574;NFY{A,B,C}:0.186313857201;SMAD1..7,9:0.169588773679;NR6A1:0.154633179786;CDC5L:0.152899004861;MTF1:0.152511397413;ZNF423:0.148855970929;SOX{8,9,10}:0.140428676101;ZNF384:0.130888525594;EVI1:0.125316791566;FOXL1:0.11131768883;FOXA2:0.107128222019;MED-1{core}:0.105070022557;MEF2{A,B,C,D}:0.0959613549928;NRF1:0.0947411107108;POU2F1..3:0.0903979320703;ELK1,4_GABP{A,B1}:0.0833640677904;PAX5:0.0781411028842;FOSL2:0.0745768298935;MYBL2:0.0708814083603;HSF1,2:0.0692371979914;BREu{core}:0.0691405020824;ONECUT1,2:0.0582517774786;CREB1:0.0204046743705;HNF1A:0.0159513336978;PRRX1,2:0.0139247932238;NANOG:0.0123823365156;ZFP161:0.0111056222529;JUN:0.00850017634265;SPZ1:0.00297504254665;HMX1:-0.00695362467975;REST:-0.0296456966089;HLF:-0.0301963205542;PDX1:-0.0427206996089;YY1:-0.0529887833718;SOX2:-0.0540887566914;PBX1:-0.0589845881602;RUNX1..3:-0.0632253983285;TOPORS:-0.0802269322698;HOX{A4,D4}:-0.0913559223585;NFE2:-0.0926556069605;NFIX:-0.0943553043476;AHR_ARNT_ARNT2:-0.108821873692;STAT2,4,6:-0.121165200738;NKX2-2,8:-0.129604263551;MYFfamily:-0.130036250072;PAX3,7:-0.142550431367;GATA4:-0.171579296927;NHLH1,2:-0.200094797871;bHLH_family:-0.214673560462;RFX1:-0.230298897315;VSX1,2:-0.232525579092;ESRRA:-0.250125054933;HMGA1,2:-0.253301682625;ADNP_IRX_SIX_ZHX:-0.258875195001;AR:-0.279453463556;NR1H4:-0.291375114038;CEBPA,B_DDIT3:-0.300864044293;OCT4_SOX2{dimer}:-0.301318697051;NFKB1_REL_RELA:-0.320783346287;PAX2:-0.323126435762;POU6F1:-0.374791781368;ARID5B:-0.385073469675;NKX3-1:-0.387938137773;HBP1_HMGB_SSRP1_UBTF:-0.390090066105;POU1F1:-0.390398005786;NKX3-2:-0.400350005967;HNF4A_NR2F1,2:-0.412122735431;PAX4:-0.419606302475;DBP:-0.429054329922;ATF4:-0.436859077347;AIRE:-0.440585373329;HOXA9_MEIS1:-0.458970906679;CRX:-0.464022643126;EP300:-0.468663369018;ATF5_CREB3:-0.491526081008;ETS1,2:-0.522983370015;GATA6:-0.53460689096;ATF2:-0.543357403998;FOX{F1,F2,J1}:-0.543725723485;SPI1:-0.582651511972;TGIF1:-0.588321455313;SPIB:-0.610506814455;RORA:-0.624507092353;HOX{A6,A7,B6,B7}:-0.629157891917;PAX6:-0.652609496658;LMO2:-0.653093541974;ELF1,2,4:-0.664132959393;SNAI1..3:-0.679053168313;SOX5:-0.686708278201;DMAP1_NCOR{1,2}_SMARC:-0.707245960268;T:-0.725889421172;NFIL3:-0.735222103262;CUX2:-0.76206160469;SREBF1,2:-0.797505604992;FOXM1:-0.799952709682;FOX{I1,J2}:-0.813464223241;ZEB1:-0.819697098719;FOXN1:-0.823098551128;MYOD1:-0.826201623373;FOXQ1:-0.84204056816;TLX2:-0.852456163263;STAT1,3:-0.857856669978;RFX2..5_RFXANK_RFXAP:-0.866342399441;IRF1,2:-0.875460142465;NKX2-1,4:-0.880417847821;FOX{D1,D2}:-0.907931981689;PITX1..3:-0.947171476513;FOXO1,3,4:-0.985230448285;BPTF:-1.00666187109;IKZF2:-1.03250591217;NKX6-1,2:-1.05675919093;FOXP3:-1.07868951296;IRF7:-1.11838804363;ZBTB16:-1.13427673428;TEF:-1.15488936087;CDX1,2,4:-1.27720610405;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.39087372948;FOXP1:-1.45267630614;RBPJ:-1.59996110044;ALX1:-1.61409833178;FOXD3:-1.62272262053 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11426-118G4;search_select_hide=table117:FF:11426-118G4 | |||
}} | }} | ||
Latest revision as of 18:00, 4 June 2020
| Name: | Osteoblast, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12036 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12036
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12036
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0723 |
| 10 | 10 | 0.0326 |
| 100 | 100 | 0.199 |
| 101 | 101 | 0.0838 |
| 102 | 102 | 0.399 |
| 103 | 103 | 0.18 |
| 104 | 104 | 0.545 |
| 105 | 105 | 0.51 |
| 106 | 106 | 0.379 |
| 107 | 107 | 0.576 |
| 108 | 108 | 0.963 |
| 109 | 109 | 0.493 |
| 11 | 11 | 0.621 |
| 110 | 110 | 0.431 |
| 111 | 111 | 0.229 |
| 112 | 112 | 0.0779 |
| 113 | 113 | 0.0788 |
| 114 | 114 | 0.392 |
| 115 | 115 | 0.0828 |
| 116 | 116 | 0.578 |
| 117 | 117 | 0.0879 |
| 118 | 118 | 0.183 |
| 119 | 119 | 0.183 |
| 12 | 12 | 0.903 |
| 120 | 120 | 0.591 |
| 121 | 121 | 0.563 |
| 122 | 122 | 0.91 |
| 123 | 123 | 1.35057e-4 |
| 124 | 124 | 0.059 |
| 125 | 125 | 0.392 |
| 126 | 126 | 0.387 |
| 127 | 127 | 0.629 |
| 128 | 128 | 0.552 |
| 129 | 129 | 0.415 |
| 13 | 13 | 0.202 |
| 130 | 130 | 0.136 |
| 131 | 131 | 0.946 |
| 132 | 132 | 0.583 |
| 133 | 133 | 0.654 |
| 134 | 134 | 0.188 |
| 135 | 135 | 0.972 |
| 136 | 136 | 0.645 |
| 137 | 137 | 0.2 |
| 138 | 138 | 0.131 |
| 139 | 139 | 0.146 |
| 14 | 14 | 0.193 |
| 140 | 140 | 0.0806 |
| 141 | 141 | 0.0151 |
| 142 | 142 | 0.252 |
| 143 | 143 | 0.592 |
| 144 | 144 | 0.618 |
| 145 | 145 | 0.422 |
| 146 | 146 | 0.951 |
| 147 | 147 | 0.3 |
| 148 | 148 | 0.00208 |
| 149 | 149 | 0.81 |
| 15 | 15 | 0.232 |
| 150 | 150 | 0.757 |
| 151 | 151 | 0.484 |
| 152 | 152 | 0.00598 |
| 153 | 153 | 0.317 |
| 154 | 154 | 0.48 |
| 155 | 155 | 0.0343 |
| 156 | 156 | 0.701 |
| 157 | 157 | 0.167 |
| 158 | 158 | 0.0108 |
| 159 | 159 | 0.529 |
| 16 | 16 | 0.649 |
| 160 | 160 | 0.977 |
| 161 | 161 | 0.892 |
| 162 | 162 | 0.517 |
| 163 | 163 | 0.791 |
| 164 | 164 | 0.258 |
| 165 | 165 | 0.61 |
| 166 | 166 | 0.199 |
| 167 | 167 | 0.352 |
| 168 | 168 | 0.778 |
| 169 | 169 | 0.919 |
| 17 | 17 | 0.999 |
| 18 | 18 | 0.925 |
| 19 | 19 | 0.641 |
| 2 | 2 | 0.669 |
| 20 | 20 | 0.595 |
| 21 | 21 | 0.757 |
| 22 | 22 | 0.682 |
| 23 | 23 | 0.421 |
| 24 | 24 | 0.589 |
| 25 | 25 | 0.331 |
| 26 | 26 | 0.992 |
| 27 | 27 | 0.851 |
| 28 | 28 | 0.0943 |
| 29 | 29 | 0.702 |
| 3 | 3 | 0.161 |
| 30 | 30 | 0.219 |
| 31 | 31 | 0.891 |
| 32 | 32 | 1.08465e-6 |
| 33 | 33 | 0.838 |
| 34 | 34 | 0.936 |
| 35 | 35 | 0.0662 |
| 36 | 36 | 0.0142 |
| 37 | 37 | 0.749 |
| 38 | 38 | 0.212 |
| 39 | 39 | 0.754 |
| 4 | 4 | 0.462 |
| 40 | 40 | 0.285 |
| 41 | 41 | 0.288 |
| 42 | 42 | 0.244 |
| 43 | 43 | 0.259 |
| 44 | 44 | 0.731 |
| 45 | 45 | 0.979 |
| 46 | 46 | 0.421 |
| 47 | 47 | 0.155 |
| 48 | 48 | 0.321 |
| 49 | 49 | 0.115 |
| 5 | 5 | 0.295 |
| 50 | 50 | 0.935 |
| 51 | 51 | 0.585 |
| 52 | 52 | 0.774 |
| 53 | 53 | 0.0363 |
| 54 | 54 | 0.676 |
| 55 | 55 | 0.726 |
| 56 | 56 | 0.758 |
| 57 | 57 | 0.437 |
| 58 | 58 | 0.0946 |
| 59 | 59 | 0.548 |
| 6 | 6 | 0.535 |
| 60 | 60 | 0.272 |
| 61 | 61 | 0.348 |
| 62 | 62 | 0.136 |
| 63 | 63 | 0.603 |
| 64 | 64 | 0.499 |
| 65 | 65 | 0.723 |
| 66 | 66 | 0.332 |
| 67 | 67 | 0.614 |
| 68 | 68 | 0.0356 |
| 69 | 69 | 0.411 |
| 7 | 7 | 0.227 |
| 70 | 70 | 0.155 |
| 71 | 71 | 0.105 |
| 72 | 72 | 0.237 |
| 73 | 73 | 0.055 |
| 74 | 74 | 0.876 |
| 75 | 75 | 0.183 |
| 76 | 76 | 0.19 |
| 77 | 77 | 0.909 |
| 78 | 78 | 0.0585 |
| 79 | 79 | 0.299 |
| 8 | 8 | 0.953 |
| 80 | 80 | 0.631 |
| 81 | 81 | 0.288 |
| 82 | 82 | 0.277 |
| 83 | 83 | 0.429 |
| 84 | 84 | 0.476 |
| 85 | 85 | 0.565 |
| 86 | 86 | 0.459 |
| 87 | 87 | 0.172 |
| 88 | 88 | 0.447 |
| 89 | 89 | 0.82 |
| 9 | 9 | 0.628 |
| 90 | 90 | 0.028 |
| 91 | 91 | 0.37 |
| 92 | 92 | 0.547 |
| 93 | 93 | 0.766 |
| 94 | 94 | 0.243 |
| 95 | 95 | 0.978 |
| 96 | 96 | 0.178 |
| 97 | 97 | 0.577 |
| 98 | 98 | 0.155 |
| 99 | 99 | 0.00588 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12036
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000127 human osteoblast-Sciencell sample
FF:0000128 human osteoblast-Cell applications sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000127 (human osteoblast-Sciencell sample)
0000128 (human osteoblast-Cell applications sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)
