FF:11434-118H3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004958 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008482;DRR009354;DRZ000779;DRZ002164;DRZ012129;DRZ013514 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0005396,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002596 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000171 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Carotid%252c%2520donor3.CNhs12044.11434-118H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11434-118H3 | |id=FF:11434-118H3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000171 | ||
|is_obsolete= | |||
|library_id=CNhs12044 | |||
|library_id_phase_based=2:CNhs12044 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11434 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11434 | |||
|name=Smooth Muscle Cells - Carotid, donor3 | |name=Smooth Muscle Cells - Carotid, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12044,LSID838,release011,COMPLETED | |profile_hcage=CNhs12044,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0.00444684902877243,0,-0.474086218752008,-0.143515142523472,0,0,-0.175653362595234,0,0.251625724314337,0,0,0,0,0,0,0,0.488858922640304,0,-0.0504125515893149,0,0.251625724314337,0,0,0,-0.305472230898407,0,-0.0484451989923413,-0.0683442610773682,0,0,0,0,0.243206607857783,0,-0.120879483793741,0.16890555599092,0,0.164715807217644,-0.055712496781182,0,0,0,0.584169340332433,-0.034552660436955,0,0,0.00403301040529454,-0.181349618560659,0,0,0.134627997388306,0,-0.0888169684346934,0.129149187345383,0,-0.328363352669144,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,-0.0304099808375785,0,0,0,0.0538804701436822,0,0,-0.373286155956567,0.075379000923125,0.0422885891672456,0.125190800951237,0,-0.302389727009913,-0.001631129122737,-0.687277440321519,-0.185689719445817,0.104223874943198,0.335690859390093,0,0.238668068192742,-0.169293839521143,0,0.260824857552448,0.0160462897201556,0.309581186876737,0.153392519424436,0,0,0,-0.00853111774462123,0,-0.190301522262381,-0.238488990162437,0.0138851324288516,0.0240246828466218,0.145352233589689,0.121885789873526,-0.00739001564323138,0.086280333700498,0.234947136394288,0,0.270357222164147,0,0,0,-0.028302176422429,0.120667372707472,0.00115261641418918,0,-0.483977461810981,-0.0683442610773682,0,-0.17674708399612,0.12466433922913,0,0,0.28332963645532,0,0,0.0948770379773531,0,0,0.29603766552748,0.152891446260717,0.0187701627587921,0,-0.0377818538643096,-0.00100809066863438,-0.0344497908826161,0,-0.226965883805258,-0.0259373196547197,0,0.233038774343705,0,0.0111246799527695,0.11589324623492,-0.164990696339003,-0.012479040600392,-0.0584468268118252,-0.478846209461394,-0.29846488695898,0.111564734877215,-0.0965562754993435,0.165301458352914,1.06854728572071,0,-0.357872171578439,0.0128854576693586,0,0.225829864180199,0,-0.161106905056422,0,-0.193073649309139,0,-0.123353461174062,0.0765450381196282,-0.439289374580686,-0.415321993107444,0,0.0175171892346764,1.22156794748657,0,0,0,0,-0.150367083334639,0.249222099749853,-0.211650427864589,-0.138989456679195,0,0.193746094566277,0,0,-0.184880811311134,-0.235476037764389,0,-0.080325303607784,0.408639116530059,0.257890826131438,-0.115971073434934,0,0,-0.394074613678388,0,0,0.011050725774838,0,-0.00280453436576511,-0.253326341486756,0,-0.108622809454255,0,0,0.23238799882617,0,-0.0128162250309984,0,0,0.184420960354779,0.293287651801213,0,0,0,0,0,0,0,0,0.125812862157168,0,0,-0.442146446681773,-0.354833330216448,0,0.346158999626741,0,0,0,0.756612669492808,0,0,0,0,0.155441344633945,0.0333058205888866,0.402655163263521,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0.251625724314337,0,0.125812862157168,-0.057730457053664,0.427707796538067,0,0,0,1.0989561974483,0,0,0,0,-0.211898747344704,0,0,-0.222014408595034,0,0.13624684239674,-0.0815818795468414,0,-0.119243285336593,0.545906514111273,0.231369354515379,0,0,-0.00972140747555067,0,0.200105208714745,-0.173837454306515,0,0.251625724314337,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.0411005920563707,-0.0922240566585104,0,0,0,0,0,0,0,0.227519701235434,-0.222874552942481,0,0,0,0,0,0.409915764791345,0,0,-0.471425939663242,0,0,0,0,0,0.31292340354874,0,0,0,0,1.25054338321356,0,0,0.415021457097369,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.905320891497579,0,0,0,0,0,0,0,0.743008732537365,0,0.409915764791345,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0.125812862157168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.070174918623723,0,0,-0.0355112080432291,0,0,0.0302079368369287,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.764148971058675,0.409915764791345,0,0.159592914513811,0,0,0,0,0.409915764791345,0,-0.162163978499541,0.491349804728386,-0.0126159378957337,0,0,0,0.323920762263949,0,0,0,0,0.184848336895436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.708783856978305,0,0,0,0,0,0,0,0,0.125812862157168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125812862157168,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.826561011546156,0,0,0,0.0385394946572932,0,0,0,0,0,0,0.251625724314337,0,0.756612669492808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251625724314337,0,0,0,0.774383523910081,0,0,0,0,0,0,0,0,0.251625724314337,0,0,0,0,0.361693689552291,0,0.608006957060856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.903932272873698,0,0,0,0,0.56934167893195,0,0,0,0,0,0,0.692383589290883,0.0366146171260983,0,0,0.251625724314337,0,0,0,0,0,0,0,0,0,0,1.02637142079459,0,0,1.05377353147511,0,0,0,0,0,0,0,0,0,0,0,0,0.19030554516421,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,1.68211725185083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671189572392656,1.04943726894152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.22891121395023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.26751644057383e-212!GO:0005737;cytoplasm;2.07155074944448e-193!GO:0043226;organelle;8.84108305870495e-150!GO:0043229;intracellular organelle;1.72736499655225e-149!GO:0043231;intracellular membrane-bound organelle;1.12643739227997e-147!GO:0043227;membrane-bound organelle;2.09471745361696e-147!GO:0044444;cytoplasmic part;1.42445121483834e-141!GO:0044422;organelle part;5.41891428448933e-125!GO:0044446;intracellular organelle part;1.05964230316041e-123!GO:0032991;macromolecular complex;1.86998252665534e-87!GO:0030529;ribonucleoprotein complex;2.68978997745437e-76!GO:0005515;protein binding;1.28637269406811e-75!GO:0044237;cellular metabolic process;2.31389414077184e-72!GO:0044238;primary metabolic process;3.16426257734951e-72!GO:0005739;mitochondrion;7.05622162470867e-71!GO:0043170;macromolecule metabolic process;3.33371953221717e-64!GO:0043233;organelle lumen;1.11917194458241e-58!GO:0031974;membrane-enclosed lumen;1.11917194458241e-58!GO:0031090;organelle membrane;9.51996522109549e-55!GO:0003723;RNA binding;5.37540464006301e-54!GO:0019538;protein metabolic process;5.84617009247524e-54!GO:0005840;ribosome;8.99794570941237e-52!GO:0006412;translation;3.8000233665656e-50!GO:0044428;nuclear part;8.27358361342405e-49!GO:0044429;mitochondrial part;2.26932728103887e-48!GO:0044260;cellular macromolecule metabolic process;2.98324709540016e-48!GO:0044267;cellular protein metabolic process;9.63028921335118e-48!GO:0003735;structural constituent of ribosome;2.30452293505428e-47!GO:0009058;biosynthetic process;1.57833611131231e-45!GO:0043234;protein complex;1.3027130940904e-44!GO:0044249;cellular biosynthetic process;2.0920265797379e-42!GO:0015031;protein transport;5.24737667282979e-42!GO:0016043;cellular component organization and biogenesis;1.61265079080313e-41!GO:0009059;macromolecule biosynthetic process;1.69194141125841e-41!GO:0033279;ribosomal subunit;1.31291228279769e-40!GO:0005829;cytosol;3.91459885400652e-40!GO:0033036;macromolecule localization;5.21902996462362e-40!GO:0005634;nucleus;7.00055326223306e-40!GO:0031967;organelle envelope;7.93643695801977e-40!GO:0031975;envelope;1.81193321768764e-39!GO:0045184;establishment of protein localization;4.28758959262841e-39!GO:0008104;protein localization;2.82358370814209e-38!GO:0006396;RNA processing;2.73295173929587e-35!GO:0005740;mitochondrial envelope;4.17875638451803e-33!GO:0046907;intracellular transport;1.1369988542283e-32!GO:0031966;mitochondrial membrane;2.72039075340134e-31!GO:0031981;nuclear lumen;6.16058872045583e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.5901001350207e-30!GO:0019866;organelle inner membrane;2.67531246653186e-29!GO:0006886;intracellular protein transport;3.04846530809604e-28!GO:0065003;macromolecular complex assembly;4.29449042711961e-28!GO:0005743;mitochondrial inner membrane;6.54823155615379e-28!GO:0043283;biopolymer metabolic process;3.39614125968426e-27!GO:0016071;mRNA metabolic process;1.00866834266361e-26!GO:0006996;organelle organization and biogenesis;1.83396851630602e-25!GO:0022607;cellular component assembly;2.60692685584483e-25!GO:0008380;RNA splicing;1.16392569027832e-24!GO:0005783;endoplasmic reticulum;1.61129956471838e-24!GO:0043228;non-membrane-bound organelle;1.74824219137896e-24!GO:0043232;intracellular non-membrane-bound organelle;1.74824219137896e-24!GO:0044445;cytosolic part;2.68209591897152e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.05944450670588e-24!GO:0006397;mRNA processing;2.8376310503148e-23!GO:0010467;gene expression;1.0255979319115e-22!GO:0006119;oxidative phosphorylation;1.7203981356852e-22!GO:0044455;mitochondrial membrane part;4.02016175289172e-22!GO:0012505;endomembrane system;2.24554256434989e-21!GO:0015934;large ribosomal subunit;4.12309062611005e-21!GO:0051641;cellular localization;1.11157599200728e-20!GO:0015935;small ribosomal subunit;1.47299032688569e-20!GO:0044432;endoplasmic reticulum part;1.61242588795345e-20!GO:0051649;establishment of cellular localization;1.63249464482265e-20!GO:0000166;nucleotide binding;8.56557265774475e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.438428928724e-19!GO:0031980;mitochondrial lumen;4.99684606854266e-19!GO:0005759;mitochondrial matrix;4.99684606854266e-19!GO:0005681;spliceosome;6.43200079220055e-19!GO:0006457;protein folding;7.24367188454561e-19!GO:0005654;nucleoplasm;2.42867864860464e-18!GO:0005746;mitochondrial respiratory chain;3.01983114599248e-18!GO:0016462;pyrophosphatase activity;4.76438851339341e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.63483641869148e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;8.7378577407229e-18!GO:0017111;nucleoside-triphosphatase activity;1.07094750827505e-17!GO:0048770;pigment granule;1.03333194806245e-16!GO:0042470;melanosome;1.03333194806245e-16!GO:0051186;cofactor metabolic process;1.57631396433879e-16!GO:0016874;ligase activity;1.98324412202661e-16!GO:0006259;DNA metabolic process;2.08448358125093e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.3070131351531e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.94647524890083e-16!GO:0005794;Golgi apparatus;4.48240736509152e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.0634866198977e-16!GO:0044451;nucleoplasm part;7.75055583989317e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.35415541942743e-15!GO:0003954;NADH dehydrogenase activity;1.35415541942743e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.35415541942743e-15!GO:0008134;transcription factor binding;1.98750787313251e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.62148549443918e-15!GO:0006605;protein targeting;3.71232447350891e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.25155191979804e-15!GO:0017076;purine nucleotide binding;6.20257143889166e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.28561950997538e-15!GO:0032553;ribonucleotide binding;1.21026228937948e-14!GO:0032555;purine ribonucleotide binding;1.21026228937948e-14!GO:0005789;endoplasmic reticulum membrane;1.36936879402202e-14!GO:0022618;protein-RNA complex assembly;1.49227415541834e-14!GO:0044265;cellular macromolecule catabolic process;1.99593227211377e-14!GO:0006512;ubiquitin cycle;2.1839887671835e-14!GO:0030964;NADH dehydrogenase complex (quinone);9.45357684866305e-14!GO:0045271;respiratory chain complex I;9.45357684866305e-14!GO:0005747;mitochondrial respiratory chain complex I;9.45357684866305e-14!GO:0051082;unfolded protein binding;1.67505776943327e-13!GO:0009057;macromolecule catabolic process;1.80288183341076e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.83529948311422e-13!GO:0042773;ATP synthesis coupled electron transport;1.83529948311422e-13!GO:0043412;biopolymer modification;2.5131053952205e-13!GO:0043285;biopolymer catabolic process;2.53157050217476e-13!GO:0005761;mitochondrial ribosome;2.58487321579932e-13!GO:0000313;organellar ribosome;2.58487321579932e-13!GO:0016192;vesicle-mediated transport;3.27102883901158e-13!GO:0044248;cellular catabolic process;3.33805583669654e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.4470207749791e-13!GO:0048193;Golgi vesicle transport;4.33802293843334e-13!GO:0005730;nucleolus;4.98247533135354e-13!GO:0008135;translation factor activity, nucleic acid binding;8.89444138374459e-13!GO:0006732;coenzyme metabolic process;1.36909355249619e-12!GO:0007049;cell cycle;1.64635414938791e-12!GO:0009055;electron carrier activity;1.73555269153676e-12!GO:0012501;programmed cell death;2.00900854662344e-12!GO:0006464;protein modification process;2.61320809424596e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.12449771673464e-12!GO:0006915;apoptosis;4.45838233219144e-12!GO:0019941;modification-dependent protein catabolic process;4.46674070561472e-12!GO:0043632;modification-dependent macromolecule catabolic process;4.46674070561472e-12!GO:0044257;cellular protein catabolic process;5.65140201212243e-12!GO:0006511;ubiquitin-dependent protein catabolic process;9.78988223124744e-12!GO:0030554;adenyl nucleotide binding;1.59086750140374e-11!GO:0005524;ATP binding;1.76629317848366e-11!GO:0005793;ER-Golgi intermediate compartment;2.14321397188261e-11!GO:0032559;adenyl ribonucleotide binding;2.26615701068716e-11!GO:0009259;ribonucleotide metabolic process;5.35575707577213e-11!GO:0030163;protein catabolic process;5.72085051696101e-11!GO:0008219;cell death;5.72085051696101e-11!GO:0016265;death;5.72085051696101e-11!GO:0006163;purine nucleotide metabolic process;1.09429430842093e-10!GO:0048523;negative regulation of cellular process;1.16591793068011e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.23948206850495e-10!GO:0000375;RNA splicing, via transesterification reactions;1.23948206850495e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.23948206850495e-10!GO:0009150;purine ribonucleotide metabolic process;1.48303845924302e-10!GO:0016491;oxidoreductase activity;1.81021133969542e-10!GO:0003712;transcription cofactor activity;2.0553206642245e-10!GO:0043687;post-translational protein modification;2.72176059620571e-10!GO:0042254;ribosome biogenesis and assembly;4.24084656664867e-10!GO:0022402;cell cycle process;4.86475698244019e-10!GO:0006164;purine nucleotide biosynthetic process;5.86909832730226e-10!GO:0000278;mitotic cell cycle;6.49065370024428e-10!GO:0003743;translation initiation factor activity;7.55830763248126e-10!GO:0009152;purine ribonucleotide biosynthetic process;7.71455974482294e-10!GO:0009260;ribonucleotide biosynthetic process;8.17393783715222e-10!GO:0006913;nucleocytoplasmic transport;1.03998307774133e-09!GO:0008565;protein transporter activity;1.31944897218491e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.32895429537206e-09!GO:0048519;negative regulation of biological process;2.04596394223128e-09!GO:0051169;nuclear transport;2.15229385757141e-09!GO:0006413;translational initiation;2.5351032982611e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.31417003711502e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.75575044937928e-09!GO:0016887;ATPase activity;6.05717603131084e-09!GO:0017038;protein import;6.60955206925052e-09!GO:0009141;nucleoside triphosphate metabolic process;6.96515195550961e-09!GO:0043067;regulation of programmed cell death;6.96515195550961e-09!GO:0051188;cofactor biosynthetic process;7.83155348936788e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.88822421197778e-09!GO:0009144;purine nucleoside triphosphate metabolic process;8.88822421197778e-09!GO:0042623;ATPase activity, coupled;9.36228802990544e-09!GO:0043069;negative regulation of programmed cell death;9.38409930298476e-09!GO:0044453;nuclear membrane part;9.44003415005819e-09!GO:0006399;tRNA metabolic process;1.19699144671653e-08!GO:0006446;regulation of translational initiation;1.21440558219427e-08!GO:0042981;regulation of apoptosis;1.28798249093308e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.30119620488207e-08!GO:0008639;small protein conjugating enzyme activity;1.40043091881357e-08!GO:0030120;vesicle coat;1.47749600819661e-08!GO:0030662;coated vesicle membrane;1.47749600819661e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.88096310136524e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.88096310136524e-08!GO:0006461;protein complex assembly;2.28719357038694e-08!GO:0005635;nuclear envelope;2.29825494723027e-08!GO:0006916;anti-apoptosis;2.30110855874368e-08!GO:0004842;ubiquitin-protein ligase activity;2.34018942551918e-08!GO:0043066;negative regulation of apoptosis;2.37823415828324e-08!GO:0015986;ATP synthesis coupled proton transport;2.60531347019791e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.60531347019791e-08!GO:0019787;small conjugating protein ligase activity;2.62707929174195e-08!GO:0003676;nucleic acid binding;3.56737553707235e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.77058115521315e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.85497230156161e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.85497230156161e-08!GO:0005788;endoplasmic reticulum lumen;4.34501862811336e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.34641461376289e-08!GO:0048475;coated membrane;4.37433844479137e-08!GO:0030117;membrane coat;4.37433844479137e-08!GO:0031965;nuclear membrane;4.37433844479137e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;6.14296412927473e-08!GO:0051246;regulation of protein metabolic process;6.64201535010377e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.89621066295971e-08!GO:0046034;ATP metabolic process;7.2303065537168e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.11537060412972e-08!GO:0004812;aminoacyl-tRNA ligase activity;9.11537060412972e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.11537060412972e-08!GO:0019829;cation-transporting ATPase activity;9.58816190179242e-08!GO:0065004;protein-DNA complex assembly;1.08793151356152e-07!GO:0009060;aerobic respiration;1.27301070722197e-07!GO:0016604;nuclear body;1.31432492030577e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.38297375340256e-07!GO:0009056;catabolic process;1.38297375340256e-07!GO:0009117;nucleotide metabolic process;1.63506886891648e-07!GO:0005768;endosome;1.66993905256977e-07!GO:0051726;regulation of cell cycle;1.80263957245651e-07!GO:0006334;nucleosome assembly;1.89861989166488e-07!GO:0000074;regulation of progression through cell cycle;1.89861989166488e-07!GO:0006091;generation of precursor metabolites and energy;1.97444691855361e-07!GO:0016881;acid-amino acid ligase activity;1.9904358581088e-07!GO:0043038;amino acid activation;1.99167974780006e-07!GO:0006418;tRNA aminoacylation for protein translation;1.99167974780006e-07!GO:0043039;tRNA aminoacylation;1.99167974780006e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.1718079442465e-07!GO:0006323;DNA packaging;2.20471870685193e-07!GO:0006333;chromatin assembly or disassembly;2.25397931988753e-07!GO:0003924;GTPase activity;2.3714119194169e-07!GO:0016787;hydrolase activity;2.63669998664767e-07!GO:0045333;cellular respiration;2.70648925783018e-07!GO:0006754;ATP biosynthetic process;2.70648925783018e-07!GO:0006753;nucleoside phosphate metabolic process;2.70648925783018e-07!GO:0044431;Golgi apparatus part;3.48214517089628e-07!GO:0016740;transferase activity;3.84600192885887e-07!GO:0007005;mitochondrion organization and biogenesis;4.63951652469803e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.63951652469803e-07!GO:0031497;chromatin assembly;4.70442726064452e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.75425917861997e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.3606084179148e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.45230075902076e-07!GO:0065002;intracellular protein transport across a membrane;5.45230075902076e-07!GO:0006974;response to DNA damage stimulus;6.35759264839357e-07!GO:0051276;chromosome organization and biogenesis;6.71496315555662e-07!GO:0009108;coenzyme biosynthetic process;8.30989080862851e-07!GO:0005643;nuclear pore;8.43873650801837e-07!GO:0031988;membrane-bound vesicle;8.82997669154924e-07!GO:0006364;rRNA processing;9.39572968892617e-07!GO:0006793;phosphorus metabolic process;1.00410356106506e-06!GO:0006796;phosphate metabolic process;1.00410356106506e-06!GO:0006366;transcription from RNA polymerase II promoter;1.17885798570041e-06!GO:0016072;rRNA metabolic process;1.4498536680954e-06!GO:0051187;cofactor catabolic process;1.65950735725306e-06!GO:0045259;proton-transporting ATP synthase complex;1.6865604063415e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.96487635815626e-06!GO:0000785;chromatin;1.96487635815626e-06!GO:0006099;tricarboxylic acid cycle;2.56958203673338e-06!GO:0046356;acetyl-CoA catabolic process;2.56958203673338e-06!GO:0044427;chromosomal part;2.8494110225457e-06!GO:0003714;transcription corepressor activity;3.56695061862176e-06!GO:0005694;chromosome;3.8072148864948e-06!GO:0004298;threonine endopeptidase activity;3.82804479620203e-06!GO:0007067;mitosis;4.06872221467832e-06!GO:0000087;M phase of mitotic cell cycle;4.18821021707355e-06!GO:0016070;RNA metabolic process;4.23290659839618e-06!GO:0048522;positive regulation of cellular process;4.47794105761101e-06!GO:0006752;group transfer coenzyme metabolic process;4.79563419242287e-06!GO:0046930;pore complex;5.1044777490047e-06!GO:0006084;acetyl-CoA metabolic process;5.49609695475736e-06!GO:0009109;coenzyme catabolic process;5.7747364579305e-06!GO:0022403;cell cycle phase;5.9790598918686e-06!GO:0016310;phosphorylation;6.0986897405005e-06!GO:0008026;ATP-dependent helicase activity;7.06706069003572e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.16900390181299e-06!GO:0016564;transcription repressor activity;8.1610814434065e-06!GO:0019843;rRNA binding;8.97816781509032e-06!GO:0016779;nucleotidyltransferase activity;1.05283801842479e-05!GO:0006606;protein import into nucleus;1.07637560526723e-05!GO:0016607;nuclear speck;1.08065298487485e-05!GO:0005798;Golgi-associated vesicle;1.11894442005708e-05!GO:0051170;nuclear import;1.16521288764619e-05!GO:0005667;transcription factor complex;1.16573303256665e-05!GO:0005525;GTP binding;1.18751677160714e-05!GO:0006281;DNA repair;1.19858497593417e-05!GO:0005773;vacuole;1.24025859089749e-05!GO:0008654;phospholipid biosynthetic process;1.24449216130919e-05!GO:0031968;organelle outer membrane;1.32947285808084e-05!GO:0045454;cell redox homeostasis;1.32947285808084e-05!GO:0004386;helicase activity;1.35999752088392e-05!GO:0006260;DNA replication;1.41483048407374e-05!GO:0019867;outer membrane;1.5873485002309e-05!GO:0032446;protein modification by small protein conjugation;1.69877120405857e-05!GO:0031410;cytoplasmic vesicle;1.8111438254918e-05!GO:0005762;mitochondrial large ribosomal subunit;1.82266038915863e-05!GO:0000315;organellar large ribosomal subunit;1.82266038915863e-05!GO:0000139;Golgi membrane;1.84099691341574e-05!GO:0031982;vesicle;1.88841309182129e-05!GO:0009719;response to endogenous stimulus;1.93273541700641e-05!GO:0044440;endosomal part;2.13189654033887e-05!GO:0010008;endosome membrane;2.13189654033887e-05!GO:0016567;protein ubiquitination;2.24096835102125e-05!GO:0044262;cellular carbohydrate metabolic process;2.3789910602426e-05!GO:0043623;cellular protein complex assembly;2.53038137937946e-05!GO:0031252;leading edge;2.72880972314733e-05!GO:0005905;coated pit;2.86028047629849e-05!GO:0000245;spliceosome assembly;3.59417098105539e-05!GO:0016853;isomerase activity;3.90444990078231e-05!GO:0016563;transcription activator activity;4.04889469101974e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.055860504348e-05!GO:0031324;negative regulation of cellular metabolic process;4.08412133993216e-05!GO:0005048;signal sequence binding;4.84927842252651e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.00983840129877e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.06513169914932e-05!GO:0005741;mitochondrial outer membrane;5.07062570947915e-05!GO:0030036;actin cytoskeleton organization and biogenesis;5.07062570947915e-05!GO:0045786;negative regulation of progression through cell cycle;5.2841210406042e-05!GO:0005770;late endosome;5.9521462661301e-05!GO:0000786;nucleosome;6.12203007801799e-05!GO:0030867;rough endoplasmic reticulum membrane;6.26658681850391e-05!GO:0006613;cotranslational protein targeting to membrane;7.46291882990385e-05!GO:0003713;transcription coactivator activity;7.51033959154264e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.66964600088982e-05!GO:0032561;guanyl ribonucleotide binding;8.05367386954947e-05!GO:0019001;guanyl nucleotide binding;8.05367386954947e-05!GO:0003697;single-stranded DNA binding;8.70318695590622e-05!GO:0015630;microtubule cytoskeleton;9.31110163146355e-05!GO:0005769;early endosome;0.000106233511956802!GO:0001558;regulation of cell growth;0.000109185725978685!GO:0008361;regulation of cell size;0.000112773483678925!GO:0009165;nucleotide biosynthetic process;0.000113148079091502!GO:0000151;ubiquitin ligase complex;0.00011898992949593!GO:0016049;cell growth;0.000128662068473197!GO:0000323;lytic vacuole;0.00013010625362413!GO:0005764;lysosome;0.00013010625362413!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000130312389008955!GO:0015399;primary active transmembrane transporter activity;0.000130312389008955!GO:0051301;cell division;0.000138391196811796!GO:0016044;membrane organization and biogenesis;0.000157462408768277!GO:0006403;RNA localization;0.000181053055973745!GO:0050657;nucleic acid transport;0.000189507007955994!GO:0051236;establishment of RNA localization;0.000189507007955994!GO:0050658;RNA transport;0.000189507007955994!GO:0030133;transport vesicle;0.000208451755892325!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000210201539424649!GO:0006082;organic acid metabolic process;0.000220721357175484!GO:0051789;response to protein stimulus;0.000228538283491971!GO:0006986;response to unfolded protein;0.000228538283491971!GO:0019752;carboxylic acid metabolic process;0.000258220587621947!GO:0009892;negative regulation of metabolic process;0.000271356088771588!GO:0007243;protein kinase cascade;0.00028271854059649!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000301986078488753!GO:0051329;interphase of mitotic cell cycle;0.000331225880276565!GO:0016859;cis-trans isomerase activity;0.000355105981094645!GO:0043566;structure-specific DNA binding;0.000371349193140254!GO:0050794;regulation of cellular process;0.000377079771041995!GO:0030029;actin filament-based process;0.000384847110394715!GO:0048518;positive regulation of biological process;0.000400588567221641!GO:0003724;RNA helicase activity;0.000400763207597783!GO:0046474;glycerophospholipid biosynthetic process;0.000425105403063256!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000434339223446438!GO:0030663;COPI coated vesicle membrane;0.000467218276578791!GO:0030126;COPI vesicle coat;0.000467218276578791!GO:0005885;Arp2/3 protein complex;0.000469555085771274!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000522289811372092!GO:0000314;organellar small ribosomal subunit;0.000524121753986751!GO:0005763;mitochondrial small ribosomal subunit;0.000524121753986751!GO:0007006;mitochondrial membrane organization and biogenesis;0.00059228018255507!GO:0003899;DNA-directed RNA polymerase activity;0.000593121826535048!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000594576433078787!GO:0046467;membrane lipid biosynthetic process;0.000653752012061061!GO:0042802;identical protein binding;0.000697126159802357!GO:0043681;protein import into mitochondrion;0.000715690243310077!GO:0030137;COPI-coated vesicle;0.000728231367767553!GO:0051325;interphase;0.000734226109663521!GO:0000279;M phase;0.00074088465229884!GO:0007010;cytoskeleton organization and biogenesis;0.000752042849682459!GO:0016568;chromatin modification;0.000765138201177355!GO:0006118;electron transport;0.000777850904466149!GO:0008632;apoptotic program;0.00084827793574995!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000858398341475749!GO:0004576;oligosaccharyl transferase activity;0.000892098661264241!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000934545475609437!GO:0005813;centrosome;0.000948826206350886!GO:0051427;hormone receptor binding;0.00095098981577978!GO:0065009;regulation of a molecular function;0.000965890575239059!GO:0006612;protein targeting to membrane;0.000965890575239059!GO:0008250;oligosaccharyl transferase complex;0.000985535692848761!GO:0030659;cytoplasmic vesicle membrane;0.000990839590542755!GO:0030132;clathrin coat of coated pit;0.00102514252273408!GO:0051920;peroxiredoxin activity;0.00104571217928162!GO:0043021;ribonucleoprotein binding;0.00109614512983866!GO:0030176;integral to endoplasmic reticulum membrane;0.00114572387888335!GO:0019899;enzyme binding;0.00116108110029373!GO:0030118;clathrin coat;0.00122467648141405!GO:0006414;translational elongation;0.00127752209981393!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00129669398947017!GO:0030658;transport vesicle membrane;0.00137591734545875!GO:0046489;phosphoinositide biosynthetic process;0.00137803120504329!GO:0043492;ATPase activity, coupled to movement of substances;0.0013962411186376!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00147945568665498!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00149551603319917!GO:0043284;biopolymer biosynthetic process;0.00156977699847084!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00161551632540076!GO:0035257;nuclear hormone receptor binding;0.00186879885914204!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00186879885914204!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00192987789953944!GO:0006626;protein targeting to mitochondrion;0.00192987789953944!GO:0051028;mRNA transport;0.00192987789953944!GO:0040008;regulation of growth;0.00192987789953944!GO:0008610;lipid biosynthetic process;0.00207953823912355!GO:0048468;cell development;0.00212526335022392!GO:0006891;intra-Golgi vesicle-mediated transport;0.00223133606826026!GO:0005815;microtubule organizing center;0.00223133606826026!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00223440703796399!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00223440703796399!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00223440703796399!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00223440703796399!GO:0008092;cytoskeletal protein binding;0.00235619731194508!GO:0007264;small GTPase mediated signal transduction;0.00239564229098133!GO:0030308;negative regulation of cell growth;0.00252252127802771!GO:0009967;positive regulation of signal transduction;0.00254559033036976!GO:0015992;proton transport;0.00266076510851824!GO:0044433;cytoplasmic vesicle part;0.00266874872542698!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00273996435589612!GO:0030134;ER to Golgi transport vesicle;0.00275369590201073!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00278033217055987!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00278033217055987!GO:0006818;hydrogen transport;0.00280545758511909!GO:0045792;negative regulation of cell size;0.00280889347720574!GO:0018196;peptidyl-asparagine modification;0.00281143375673947!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00281143375673947!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00304479857444759!GO:0046519;sphingoid metabolic process;0.00317057084930745!GO:0006950;response to stress;0.00319252793967817!GO:0008186;RNA-dependent ATPase activity;0.00319252793967817!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00319252793967817!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00325216868115931!GO:0005791;rough endoplasmic reticulum;0.00334740969015182!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0034405193607384!GO:0017166;vinculin binding;0.00370063530856282!GO:0030660;Golgi-associated vesicle membrane;0.00373421414958476!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00377530104793985!GO:0019318;hexose metabolic process;0.00379281613784713!GO:0030119;AP-type membrane coat adaptor complex;0.003985076011908!GO:0005996;monosaccharide metabolic process;0.00404010540368353!GO:0006007;glucose catabolic process;0.00411958370855453!GO:0006979;response to oxidative stress;0.00417811951034842!GO:0006839;mitochondrial transport;0.00424966543875601!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00427652671162791!GO:0015002;heme-copper terminal oxidase activity;0.00427652671162791!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00427652671162791!GO:0004129;cytochrome-c oxidase activity;0.00427652671162791!GO:0051168;nuclear export;0.00432258749765447!GO:0031072;heat shock protein binding;0.00434306358007084!GO:0004177;aminopeptidase activity;0.00438117998406792!GO:0006778;porphyrin metabolic process;0.00445247405387477!GO:0033013;tetrapyrrole metabolic process;0.00445247405387477!GO:0016126;sterol biosynthetic process;0.00452751709618358!GO:0046483;heterocycle metabolic process;0.00463695708601412!GO:0050662;coenzyme binding;0.00465472736318048!GO:0008139;nuclear localization sequence binding;0.00471298683870412!GO:0005684;U2-dependent spliceosome;0.00476228998945097!GO:0016481;negative regulation of transcription;0.00482441311853412!GO:0030127;COPII vesicle coat;0.00484313046549288!GO:0012507;ER to Golgi transport vesicle membrane;0.00484313046549288!GO:0006497;protein amino acid lipidation;0.00490510696822826!GO:0045941;positive regulation of transcription;0.00491299454862355!GO:0006509;membrane protein ectodomain proteolysis;0.0049445773864834!GO:0033619;membrane protein proteolysis;0.0049445773864834!GO:0006595;polyamine metabolic process;0.00496196544467131!GO:0003684;damaged DNA binding;0.00531030509363097!GO:0015631;tubulin binding;0.00634620755289671!GO:0007050;cell cycle arrest;0.00647528013872214!GO:0030131;clathrin adaptor complex;0.00665431187185153!GO:0042168;heme metabolic process;0.00666462261087813!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0067303389266494!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0067303389266494!GO:0030041;actin filament polymerization;0.00679247518895044!GO:0008033;tRNA processing;0.00683816628073952!GO:0008047;enzyme activator activity;0.00701822775542266!GO:0048487;beta-tubulin binding;0.00704806628534888!GO:0000059;protein import into nucleus, docking;0.00716356355721284!GO:0003746;translation elongation factor activity;0.00730640293980379!GO:0004004;ATP-dependent RNA helicase activity;0.00759347947271479!GO:0006672;ceramide metabolic process;0.00765059911248148!GO:0043433;negative regulation of transcription factor activity;0.00768323069346081!GO:0030027;lamellipodium;0.00776534198302492!GO:0048037;cofactor binding;0.00788166741500216!GO:0031418;L-ascorbic acid binding;0.00802004001926254!GO:0006520;amino acid metabolic process;0.00802004001926254!GO:0012506;vesicle membrane;0.0088237814410656!GO:0007040;lysosome organization and biogenesis;0.00903029123054358!GO:0005774;vacuolar membrane;0.00929713403702023!GO:0050789;regulation of biological process;0.00930784051080728!GO:0001666;response to hypoxia;0.00931668170527631!GO:0006506;GPI anchor biosynthetic process;0.00959440738685516!GO:0005819;spindle;0.00973861598651719!GO:0030125;clathrin vesicle coat;0.00994059883768389!GO:0030665;clathrin coated vesicle membrane;0.00994059883768389!GO:0003756;protein disulfide isomerase activity;0.0101439800482422!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0101439800482422!GO:0006401;RNA catabolic process;0.010197913573065!GO:0030880;RNA polymerase complex;0.0102016042375091!GO:0000082;G1/S transition of mitotic cell cycle;0.0102016042375091!GO:0030521;androgen receptor signaling pathway;0.0103275992586783!GO:0051540;metal cluster binding;0.0103275992586783!GO:0051536;iron-sulfur cluster binding;0.0103275992586783!GO:0045936;negative regulation of phosphate metabolic process;0.0108487123321822!GO:0045893;positive regulation of transcription, DNA-dependent;0.0112455007830451!GO:0051235;maintenance of localization;0.0112917906299405!GO:0045926;negative regulation of growth;0.0112924898292544!GO:0035258;steroid hormone receptor binding;0.0112924898292544!GO:0005862;muscle thin filament tropomyosin;0.0113077601457011!GO:0003729;mRNA binding;0.0114489514998489!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.011912557002241!GO:0006505;GPI anchor metabolic process;0.0119647577948212!GO:0006289;nucleotide-excision repair;0.0120665380870264!GO:0008637;apoptotic mitochondrial changes;0.0121613381503067!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0122402729376503!GO:0005975;carbohydrate metabolic process;0.0122460028930488!GO:0031543;peptidyl-proline dioxygenase activity;0.0123108581281909!GO:0006066;alcohol metabolic process;0.0123290024474885!GO:0005869;dynactin complex;0.0124291898226322!GO:0051287;NAD binding;0.0124291898226322!GO:0048500;signal recognition particle;0.0124291898226322!GO:0045185;maintenance of protein localization;0.0130259662945379!GO:0022890;inorganic cation transmembrane transporter activity;0.013299725382912!GO:0051059;NF-kappaB binding;0.0134777577689067!GO:0006650;glycerophospholipid metabolic process;0.0135493268130021!GO:0045045;secretory pathway;0.013757898308022!GO:0030145;manganese ion binding;0.0140951630899201!GO:0016301;kinase activity;0.0144763642323243!GO:0030833;regulation of actin filament polymerization;0.0150769157920999!GO:0042158;lipoprotein biosynthetic process;0.0150769157920999!GO:0006779;porphyrin biosynthetic process;0.0155139088649241!GO:0033014;tetrapyrrole biosynthetic process;0.0155139088649241!GO:0051252;regulation of RNA metabolic process;0.0160470065023752!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0163550406100709!GO:0032507;maintenance of cellular protein localization;0.0163884685875276!GO:0033673;negative regulation of kinase activity;0.016588011278649!GO:0006469;negative regulation of protein kinase activity;0.016588011278649!GO:0006740;NADPH regeneration;0.0169418926942191!GO:0006098;pentose-phosphate shunt;0.0169418926942191!GO:0003711;transcription elongation regulator activity;0.0169845659477201!GO:0051087;chaperone binding;0.0176330165312068!GO:0019798;procollagen-proline dioxygenase activity;0.0176723823906205!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0178821872003226!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0180097115025919!GO:0048471;perinuclear region of cytoplasm;0.0182880614813047!GO:0044437;vacuolar part;0.0187430878529477!GO:0031301;integral to organelle membrane;0.0188100653400638!GO:0032981;mitochondrial respiratory chain complex I assembly;0.018906140401236!GO:0010257;NADH dehydrogenase complex assembly;0.018906140401236!GO:0033108;mitochondrial respiratory chain complex assembly;0.018906140401236!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0191487139231286!GO:0045047;protein targeting to ER;0.0191487139231286!GO:0007033;vacuole organization and biogenesis;0.0195302048120243!GO:0046365;monosaccharide catabolic process;0.0196869607190054!GO:0004674;protein serine/threonine kinase activity;0.0199035358980995!GO:0016363;nuclear matrix;0.0202093517750437!GO:0006695;cholesterol biosynthetic process;0.0203516134339401!GO:0031529;ruffle organization and biogenesis;0.0204000359103113!GO:0006354;RNA elongation;0.0204000359103113!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0204000359103113!GO:0000428;DNA-directed RNA polymerase complex;0.0204000359103113!GO:0001726;ruffle;0.0204000359103113!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0208458484621828!GO:0051348;negative regulation of transferase activity;0.0210926040342018!GO:0016197;endosome transport;0.0211626417130868!GO:0006096;glycolysis;0.0212100512536435!GO:0006897;endocytosis;0.0213408813229773!GO:0010324;membrane invagination;0.0213408813229773!GO:0005832;chaperonin-containing T-complex;0.0213408813229773!GO:0043022;ribosome binding;0.0215409478010128!GO:0031272;regulation of pseudopodium formation;0.0216882347515781!GO:0031269;pseudopodium formation;0.0216882347515781!GO:0031344;regulation of cell projection organization and biogenesis;0.0216882347515781!GO:0031268;pseudopodium organization and biogenesis;0.0216882347515781!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0216882347515781!GO:0031274;positive regulation of pseudopodium formation;0.0216882347515781!GO:0030384;phosphoinositide metabolic process;0.0217865433736499!GO:0006383;transcription from RNA polymerase III promoter;0.0219228389760901!GO:0043488;regulation of mRNA stability;0.0220685302679174!GO:0043487;regulation of RNA stability;0.0220685302679174!GO:0006783;heme biosynthetic process;0.0222320234372529!GO:0008538;proteasome activator activity;0.0223087712319645!GO:0046426;negative regulation of JAK-STAT cascade;0.0223367404715253!GO:0016860;intramolecular oxidoreductase activity;0.0227852355861194!GO:0050790;regulation of catalytic activity;0.0228198066719243!GO:0008312;7S RNA binding;0.0228454191363102!GO:0006611;protein export from nucleus;0.0228528826055361!GO:0006417;regulation of translation;0.0231942697469708!GO:0008243;plasminogen activator activity;0.0231942697469708!GO:0051539;4 iron, 4 sulfur cluster binding;0.0236591971568531!GO:0007030;Golgi organization and biogenesis;0.0239263988479431!GO:0031902;late endosome membrane;0.0239797353220918!GO:0019206;nucleoside kinase activity;0.0242598399283569!GO:0042326;negative regulation of phosphorylation;0.0251566992748581!GO:0006807;nitrogen compound metabolic process;0.0251566992748581!GO:0000049;tRNA binding;0.0252405420128351!GO:0050178;phenylpyruvate tautomerase activity;0.0252561172092823!GO:0008283;cell proliferation;0.0253814848470272!GO:0006261;DNA-dependent DNA replication;0.0257518242287381!GO:0046822;regulation of nucleocytoplasmic transport;0.0268179046197777!GO:0005874;microtubule;0.0271905335635636!GO:0005765;lysosomal membrane;0.0273615446531034!GO:0050811;GABA receptor binding;0.0275332055949469!GO:0019320;hexose catabolic process;0.0281935621964018!GO:0007162;negative regulation of cell adhesion;0.0284519499133875!GO:0005092;GDP-dissociation inhibitor activity;0.028700704768126!GO:0051651;maintenance of cellular localization;0.0287358897092088!GO:0000096;sulfur amino acid metabolic process;0.0289727282665912!GO:0007346;regulation of progression through mitotic cell cycle;0.0289776781958721!GO:0022408;negative regulation of cell-cell adhesion;0.0289973602636132!GO:0031625;ubiquitin protein ligase binding;0.0294294369754671!GO:0005637;nuclear inner membrane;0.0296209831671755!GO:0008154;actin polymerization and/or depolymerization;0.0303116011225169!GO:0009889;regulation of biosynthetic process;0.0306631938551652!GO:0006402;mRNA catabolic process;0.0312855872774219!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0321314975720749!GO:0030433;ER-associated protein catabolic process;0.0327088689800393!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0327088689800393!GO:0000287;magnesium ion binding;0.0327088689800393!GO:0006284;base-excision repair;0.0327088689800393!GO:0031124;mRNA 3'-end processing;0.0327534272528266!GO:0035035;histone acetyltransferase binding;0.0336534743259865!GO:0006002;fructose 6-phosphate metabolic process;0.0337744140900482!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0340954337945422!GO:0030032;lamellipodium biogenesis;0.0346420572791568!GO:0051098;regulation of binding;0.0346420572791568!GO:0006643;membrane lipid metabolic process;0.0353685920785568!GO:0000030;mannosyltransferase activity;0.0355602341104945!GO:0031901;early endosome membrane;0.0355602341104945!GO:0000209;protein polyubiquitination;0.0355602341104945!GO:0046164;alcohol catabolic process;0.035619004887797!GO:0006458;'de novo' protein folding;0.0356353726444174!GO:0051084;'de novo' posttranslational protein folding;0.0356353726444174!GO:0016272;prefoldin complex;0.0361156989895449!GO:0000118;histone deacetylase complex;0.0361799148584283!GO:0005096;GTPase activator activity;0.0371284293634605!GO:0051101;regulation of DNA binding;0.0375950496015476!GO:0005100;Rho GTPase activator activity;0.038949559458315!GO:0030518;steroid hormone receptor signaling pathway;0.0391062149549545!GO:0004722;protein serine/threonine phosphatase activity;0.0394833128061799!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0394833128061799!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0394833128061799!GO:0003678;DNA helicase activity;0.0396172875244943!GO:0050681;androgen receptor binding;0.0399591358025173!GO:0051272;positive regulation of cell motility;0.0399591358025173!GO:0040017;positive regulation of locomotion;0.0399591358025173!GO:0007242;intracellular signaling cascade;0.0402482756725671!GO:0009112;nucleobase metabolic process;0.0402489804138336!GO:0048144;fibroblast proliferation;0.041118472293454!GO:0048145;regulation of fibroblast proliferation;0.041118472293454!GO:0016791;phosphoric monoester hydrolase activity;0.0415739453504312!GO:0006984;ER-nuclear signaling pathway;0.0420527961981487!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0420527961981487!GO:0005657;replication fork;0.0425120896698811!GO:0016408;C-acyltransferase activity;0.0427560839672984!GO:0045334;clathrin-coated endocytic vesicle;0.0427560839672984!GO:0006308;DNA catabolic process;0.0428455850416679!GO:0043189;H4/H2A histone acetyltransferase complex;0.0433323285183805!GO:0007265;Ras protein signal transduction;0.0434153411832433!GO:0001953;negative regulation of cell-matrix adhesion;0.043601562860211!GO:0005801;cis-Golgi network;0.0438536111425287!GO:0008652;amino acid biosynthetic process;0.0438536111425287!GO:0033559;unsaturated fatty acid metabolic process;0.0440980034969638!GO:0006636;unsaturated fatty acid biosynthetic process;0.0440980034969638!GO:0016584;nucleosome positioning;0.0449352399418248!GO:0044452;nucleolar part;0.0453483514253993!GO:0009893;positive regulation of metabolic process;0.0453549177004195!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0453549177004195!GO:0043068;positive regulation of programmed cell death;0.0453774628313623!GO:0008180;signalosome;0.0456723919672556!GO:0044438;microbody part;0.0459588449751949!GO:0044439;peroxisomal part;0.0459588449751949!GO:0043065;positive regulation of apoptosis;0.0459938133348254!GO:0031326;regulation of cellular biosynthetic process;0.0460257716401751!GO:0000339;RNA cap binding;0.0461654770617053!GO:0016311;dephosphorylation;0.0474737811735943!GO:0007021;tubulin folding;0.047511895818727!GO:0006621;protein retention in ER;0.0481388232463577!GO:0008022;protein C-terminus binding;0.0482385852039062!GO:0030911;TPR domain binding;0.0489810027777449!GO:0006376;mRNA splice site selection;0.0489968673860077!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0489968673860077!GO:0051128;regulation of cellular component organization and biogenesis;0.049297872711211!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0496224984337526!GO:0035267;NuA4 histone acetyltransferase complex;0.0496808805766913 | |||
|sample_id=11434 | |sample_id=11434 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=carotid artery | |sample_tissue=carotid artery | ||
|top_motifs=HES1:2.00170270347;HIF1A:1.89076691271;GTF2A1,2:1.7251680954;PPARG:1.66926708073;IKZF1:1.6536062422;ALX4:1.63046796152;POU2F1..3:1.6268459044;HMX1:1.53723414788;EBF1:1.37269700596;GLI1..3:1.32861601081;TFAP4:1.29630601274;PBX1:1.29301210747;NFE2L1:1.23187087354;ZNF148:1.17973169859;RXRA_VDR{dimer}:1.13701018878;HOX{A5,B5}:1.13128184997;ZNF238:1.01663896583;ZNF423:0.975376180995;ZBTB6:0.964563983673;TFCP2:0.946837892607;TBP:0.938520627709;POU3F1..4:0.925074941063;NR5A1,2:0.911267953831;XCPE1{core}:0.85466954261;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.83840445495;SRF:0.822312099561;UFEwm:0.816684561295;TLX1..3_NFIC{dimer}:0.8099126176;ONECUT1,2:0.756075720502;ZIC1..3:0.733140858284;POU6F1:0.695062254558;NANOG{mouse}:0.689117404587;ATF6:0.67185354698;EN1,2:0.663057448479;ESR1:0.654500685023;MAFB:0.601741435602;ESRRA:0.598157371197;BACH2:0.587086354541;GCM1,2:0.576648634371;PAX1,9:0.568867981801;TFAP2{A,C}:0.557299553506;REST:0.550132581351;TAL1_TCF{3,4,12}:0.516534903441;TEAD1:0.497338066846;NFE2L2:0.486278867157;NFIX:0.455773685469;GFI1B:0.431452750209;FOS_FOS{B,L1}_JUN{B,D}:0.401675472479;TFAP2B:0.393944443442;SOX17:0.388329684396;GZF1:0.38019805432;AHR_ARNT_ARNT2:0.3472230093;RXR{A,B,G}:0.316412774704;TP53:0.301568876059;FOXQ1:0.301479831159;HLF:0.293008522245;XBP1:0.281247493924;FOSL2:0.278079485847;SMAD1..7,9:0.242556941161;AR:0.242028606322;SOX{8,9,10}:0.238694744044;KLF4:0.226255633351;NFE2:0.225509399452;NR3C1:0.218212421551;HAND1,2:0.216056014975;NFKB1_REL_RELA:0.211496785389;TBX4,5:0.195291943721;JUN:0.195094382294;SPZ1:0.158198818488;GTF2I:0.147318385375;CEBPA,B_DDIT3:0.145205922686;POU1F1:0.141086055607;LMO2:0.127629152765;HOXA9_MEIS1:0.118805756888;CRX:0.093615834412;HNF1A:0.0514362835182;NKX3-2:0.0389907896104;HSF1,2:0.0162909810382;NFATC1..3:0.0112448441984;STAT2,4,6:0.00650375379477;PAX5:-0.00430308743951;ALX1:-0.0078451365475;MTE{core}:-0.0124748491617;MYBL2:-0.014665606712;CDC5L:-0.0275799405447;ELK1,4_GABP{A,B1}:-0.0390876709784;HIC1:-0.044528192524;STAT5{A,B}:-0.0481794600395;TLX2:-0.0595335692344;MZF1:-0.0735746582236;LHX3,4:-0.0977387689163;GFI1:-0.132150761404;ETS1,2:-0.156374059422;MTF1:-0.16256774888;RFX1:-0.163689479141;FOX{I1,J2}:-0.164001340724;NR6A1:-0.169045522281;POU5F1:-0.172220512697;TOPORS:-0.175259272236;PAX8:-0.179562730871;EVI1:-0.179764817974;NHLH1,2:-0.195426964592;VSX1,2:-0.199091611133;PAX3,7:-0.204660304117;RREB1:-0.219064054086;FOXM1:-0.219395511194;MEF2{A,B,C,D}:-0.23395205587;MYOD1:-0.237064147435;YY1:-0.241175372509;PATZ1:-0.250328491972;PAX2:-0.251774501899;FOXL1:-0.256074640045;LEF1_TCF7_TCF7L1,2:-0.257473598549;HNF4A_NR2F1,2:-0.277274422325;MYFfamily:-0.280502500574;MED-1{core}:-0.301245385744;GATA6:-0.304407033025;ATF2:-0.326520643695;RUNX1..3:-0.333441435195;SP1:-0.350856305443;MYB:-0.357069025826;NKX2-2,8:-0.371165843768;bHLH_family:-0.393810128017;NFIL3:-0.40471562797;AIRE:-0.405243573288;FOX{F1,F2,J1}:-0.40606112509;SPIB:-0.409942773736;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.419552347229;ZNF143:-0.452271643645;MAZ:-0.458684344099;E2F1..5:-0.460897031948;SNAI1..3:-0.463327798063;ADNP_IRX_SIX_ZHX:-0.469189495906;ZFP161:-0.472044962091;SOX2:-0.492712070855;SPI1:-0.515106459432;NKX3-1:-0.537104467165;NRF1:-0.537712732855;ZEB1:-0.543236869319;HMGA1,2:-0.558708923275;PAX6:-0.559474844162;ATF4:-0.589995813403;EP300:-0.592781209855;ARID5B:-0.600368432978;ATF5_CREB3:-0.600700547185;PRDM1:-0.616413919135;OCT4_SOX2{dimer}:-0.619667832008;NANOG:-0.628851477666;ELF1,2,4:-0.667008895994;IRF1,2:-0.670274977264;CDX1,2,4:-0.67232208063;T:-0.692494130404;NFY{A,B,C}:-0.718756703205;ZNF384:-0.73972806653;CREB1:-0.750221400476;TFDP1:-0.761709963335;EGR1..3:-0.803283785062;RORA:-0.82182913699;IRF7:-0.835784795542;DBP:-0.847188132611;NR1H4:-0.85228564354;DMAP1_NCOR{1,2}_SMARC:-0.858592952121;GATA4:-0.912394362755;TGIF1:-0.939477611343;PRRX1,2:-0.948925432662;PITX1..3:-0.959455425443;FOX{D1,D2}:-1.00257529863;RFX2..5_RFXANK_RFXAP:-1.0027459411;HOX{A4,D4}:-1.0477971983;FOXP3:-1.06251902238;BREu{core}:-1.11485158249;NKX2-3_NKX2-5:-1.233417465;CUX2:-1.23834292497;IKZF2:-1.25146945516;HBP1_HMGB_SSRP1_UBTF:-1.26565614758;SOX5:-1.32151703308;ZBTB16:-1.37100069206;FOXN1:-1.39918261387;HOX{A6,A7,B6,B7}:-1.42809719005;BPTF:-1.43701533906;SREBF1,2:-1.49816540259;FOXO1,3,4:-1.5183103042;FOXP1:-1.59152123672;PDX1:-1.61795102436;RBPJ:-1.64164649187;STAT1,3:-1.64185320235;NKX6-1,2:-1.71791589834;TEF:-1.8052329542;PAX4:-2.04033122486;NKX2-1,4:-2.08142315779;FOXA2:-2.1478637449;FOXD3:-2.27707204609 | |top_motifs=HES1:2.00170270347;HIF1A:1.89076691271;GTF2A1,2:1.7251680954;PPARG:1.66926708073;IKZF1:1.6536062422;ALX4:1.63046796152;POU2F1..3:1.6268459044;HMX1:1.53723414788;EBF1:1.37269700596;GLI1..3:1.32861601081;TFAP4:1.29630601274;PBX1:1.29301210747;NFE2L1:1.23187087354;ZNF148:1.17973169859;RXRA_VDR{dimer}:1.13701018878;HOX{A5,B5}:1.13128184997;ZNF238:1.01663896583;ZNF423:0.975376180995;ZBTB6:0.964563983673;TFCP2:0.946837892607;TBP:0.938520627709;POU3F1..4:0.925074941063;NR5A1,2:0.911267953831;XCPE1{core}:0.85466954261;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.83840445495;SRF:0.822312099561;UFEwm:0.816684561295;TLX1..3_NFIC{dimer}:0.8099126176;ONECUT1,2:0.756075720502;ZIC1..3:0.733140858284;POU6F1:0.695062254558;NANOG{mouse}:0.689117404587;ATF6:0.67185354698;EN1,2:0.663057448479;ESR1:0.654500685023;MAFB:0.601741435602;ESRRA:0.598157371197;BACH2:0.587086354541;GCM1,2:0.576648634371;PAX1,9:0.568867981801;TFAP2{A,C}:0.557299553506;REST:0.550132581351;TAL1_TCF{3,4,12}:0.516534903441;TEAD1:0.497338066846;NFE2L2:0.486278867157;NFIX:0.455773685469;GFI1B:0.431452750209;FOS_FOS{B,L1}_JUN{B,D}:0.401675472479;TFAP2B:0.393944443442;SOX17:0.388329684396;GZF1:0.38019805432;AHR_ARNT_ARNT2:0.3472230093;RXR{A,B,G}:0.316412774704;TP53:0.301568876059;FOXQ1:0.301479831159;HLF:0.293008522245;XBP1:0.281247493924;FOSL2:0.278079485847;SMAD1..7,9:0.242556941161;AR:0.242028606322;SOX{8,9,10}:0.238694744044;KLF4:0.226255633351;NFE2:0.225509399452;NR3C1:0.218212421551;HAND1,2:0.216056014975;NFKB1_REL_RELA:0.211496785389;TBX4,5:0.195291943721;JUN:0.195094382294;SPZ1:0.158198818488;GTF2I:0.147318385375;CEBPA,B_DDIT3:0.145205922686;POU1F1:0.141086055607;LMO2:0.127629152765;HOXA9_MEIS1:0.118805756888;CRX:0.093615834412;HNF1A:0.0514362835182;NKX3-2:0.0389907896104;HSF1,2:0.0162909810382;NFATC1..3:0.0112448441984;STAT2,4,6:0.00650375379477;PAX5:-0.00430308743951;ALX1:-0.0078451365475;MTE{core}:-0.0124748491617;MYBL2:-0.014665606712;CDC5L:-0.0275799405447;ELK1,4_GABP{A,B1}:-0.0390876709784;HIC1:-0.044528192524;STAT5{A,B}:-0.0481794600395;TLX2:-0.0595335692344;MZF1:-0.0735746582236;LHX3,4:-0.0977387689163;GFI1:-0.132150761404;ETS1,2:-0.156374059422;MTF1:-0.16256774888;RFX1:-0.163689479141;FOX{I1,J2}:-0.164001340724;NR6A1:-0.169045522281;POU5F1:-0.172220512697;TOPORS:-0.175259272236;PAX8:-0.179562730871;EVI1:-0.179764817974;NHLH1,2:-0.195426964592;VSX1,2:-0.199091611133;PAX3,7:-0.204660304117;RREB1:-0.219064054086;FOXM1:-0.219395511194;MEF2{A,B,C,D}:-0.23395205587;MYOD1:-0.237064147435;YY1:-0.241175372509;PATZ1:-0.250328491972;PAX2:-0.251774501899;FOXL1:-0.256074640045;LEF1_TCF7_TCF7L1,2:-0.257473598549;HNF4A_NR2F1,2:-0.277274422325;MYFfamily:-0.280502500574;MED-1{core}:-0.301245385744;GATA6:-0.304407033025;ATF2:-0.326520643695;RUNX1..3:-0.333441435195;SP1:-0.350856305443;MYB:-0.357069025826;NKX2-2,8:-0.371165843768;bHLH_family:-0.393810128017;NFIL3:-0.40471562797;AIRE:-0.405243573288;FOX{F1,F2,J1}:-0.40606112509;SPIB:-0.409942773736;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.419552347229;ZNF143:-0.452271643645;MAZ:-0.458684344099;E2F1..5:-0.460897031948;SNAI1..3:-0.463327798063;ADNP_IRX_SIX_ZHX:-0.469189495906;ZFP161:-0.472044962091;SOX2:-0.492712070855;SPI1:-0.515106459432;NKX3-1:-0.537104467165;NRF1:-0.537712732855;ZEB1:-0.543236869319;HMGA1,2:-0.558708923275;PAX6:-0.559474844162;ATF4:-0.589995813403;EP300:-0.592781209855;ARID5B:-0.600368432978;ATF5_CREB3:-0.600700547185;PRDM1:-0.616413919135;OCT4_SOX2{dimer}:-0.619667832008;NANOG:-0.628851477666;ELF1,2,4:-0.667008895994;IRF1,2:-0.670274977264;CDX1,2,4:-0.67232208063;T:-0.692494130404;NFY{A,B,C}:-0.718756703205;ZNF384:-0.73972806653;CREB1:-0.750221400476;TFDP1:-0.761709963335;EGR1..3:-0.803283785062;RORA:-0.82182913699;IRF7:-0.835784795542;DBP:-0.847188132611;NR1H4:-0.85228564354;DMAP1_NCOR{1,2}_SMARC:-0.858592952121;GATA4:-0.912394362755;TGIF1:-0.939477611343;PRRX1,2:-0.948925432662;PITX1..3:-0.959455425443;FOX{D1,D2}:-1.00257529863;RFX2..5_RFXANK_RFXAP:-1.0027459411;HOX{A4,D4}:-1.0477971983;FOXP3:-1.06251902238;BREu{core}:-1.11485158249;NKX2-3_NKX2-5:-1.233417465;CUX2:-1.23834292497;IKZF2:-1.25146945516;HBP1_HMGB_SSRP1_UBTF:-1.26565614758;SOX5:-1.32151703308;ZBTB16:-1.37100069206;FOXN1:-1.39918261387;HOX{A6,A7,B6,B7}:-1.42809719005;BPTF:-1.43701533906;SREBF1,2:-1.49816540259;FOXO1,3,4:-1.5183103042;FOXP1:-1.59152123672;PDX1:-1.61795102436;RBPJ:-1.64164649187;STAT1,3:-1.64185320235;NKX6-1,2:-1.71791589834;TEF:-1.8052329542;PAX4:-2.04033122486;NKX2-1,4:-2.08142315779;FOXA2:-2.1478637449;FOXD3:-2.27707204609 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11434-118H3;search_select_hide=table117:FF:11434-118H3 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Smooth Muscle Cells - Carotid, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12044 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12044
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12044
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.464 |
| 10 | 10 | 0.854 |
| 100 | 100 | 0.72 |
| 101 | 101 | 0.127 |
| 102 | 102 | 0.842 |
| 103 | 103 | 0.138 |
| 104 | 104 | 0.323 |
| 105 | 105 | 0.654 |
| 106 | 106 | 0.0321 |
| 107 | 107 | 0.0762 |
| 108 | 108 | 0.474 |
| 109 | 109 | 0.0267 |
| 11 | 11 | 0.0466 |
| 110 | 110 | 0.153 |
| 111 | 111 | 0.739 |
| 112 | 112 | 0.514 |
| 113 | 113 | 0.279 |
| 114 | 114 | 0.257 |
| 115 | 115 | 0.0511 |
| 116 | 116 | 0.0277 |
| 117 | 117 | 0.31 |
| 118 | 118 | 0.605 |
| 119 | 119 | 0.0867 |
| 12 | 12 | 0.971 |
| 120 | 120 | 0.0643 |
| 121 | 121 | 0.686 |
| 122 | 122 | 0.794 |
| 123 | 123 | 0.0885 |
| 124 | 124 | 0.636 |
| 125 | 125 | 0.5 |
| 126 | 126 | 0.61 |
| 127 | 127 | 0.571 |
| 128 | 128 | 0.132 |
| 129 | 129 | 0.622 |
| 13 | 13 | 0.661 |
| 130 | 130 | 0.515 |
| 131 | 131 | 0.659 |
| 132 | 132 | 0.6 |
| 133 | 133 | 0.784 |
| 134 | 134 | 0.781 |
| 135 | 135 | 0.241 |
| 136 | 136 | 0.44 |
| 137 | 137 | 0.696 |
| 138 | 138 | 0.703 |
| 139 | 139 | 0.253 |
| 14 | 14 | 0.628 |
| 140 | 140 | 0.555 |
| 141 | 141 | 0.94 |
| 142 | 142 | 0.655 |
| 143 | 143 | 0.0178 |
| 144 | 144 | 0.808 |
| 145 | 145 | 0.116 |
| 146 | 146 | 0.11 |
| 147 | 147 | 0.253 |
| 148 | 148 | 0.862 |
| 149 | 149 | 0.412 |
| 15 | 15 | 0.561 |
| 150 | 150 | 0.147 |
| 151 | 151 | 0.619 |
| 152 | 152 | 0.0437 |
| 153 | 153 | 0.192 |
| 154 | 154 | 0.57 |
| 155 | 155 | 0.362 |
| 156 | 156 | 0.831 |
| 157 | 157 | 0.603 |
| 158 | 158 | 0.169 |
| 159 | 159 | 0.738 |
| 16 | 16 | 0.0358 |
| 160 | 160 | 0.0404 |
| 161 | 161 | 0.583 |
| 162 | 162 | 0.696 |
| 163 | 163 | 0.99 |
| 164 | 164 | 0.176 |
| 165 | 165 | 0.122 |
| 166 | 166 | 0.634 |
| 167 | 167 | 0.22 |
| 168 | 168 | 0.86 |
| 169 | 169 | 0.0404 |
| 17 | 17 | 0.0935 |
| 18 | 18 | 0.0194 |
| 19 | 19 | 0.0708 |
| 2 | 2 | 0.152 |
| 20 | 20 | 0.495 |
| 21 | 21 | 0.366 |
| 22 | 22 | 0.192 |
| 23 | 23 | 0.0573 |
| 24 | 24 | 0.399 |
| 25 | 25 | 0.691 |
| 26 | 26 | 0.0202 |
| 27 | 27 | 0.251 |
| 28 | 28 | 0.234 |
| 29 | 29 | 0.158 |
| 3 | 3 | 0.303 |
| 30 | 30 | 0.558 |
| 31 | 31 | 0.354 |
| 32 | 32 | 1.24549e-7 |
| 33 | 33 | 0.385 |
| 34 | 34 | 0.344 |
| 35 | 35 | 0.395 |
| 36 | 36 | 0.79 |
| 37 | 37 | 0.0885 |
| 38 | 38 | 0.478 |
| 39 | 39 | 0.196 |
| 4 | 4 | 0.533 |
| 40 | 40 | 0.0561 |
| 41 | 41 | 0.882 |
| 42 | 42 | 0.72 |
| 43 | 43 | 0.237 |
| 44 | 44 | 0.124 |
| 45 | 45 | 0.332 |
| 46 | 46 | 0.113 |
| 47 | 47 | 0.346 |
| 48 | 48 | 0.145 |
| 49 | 49 | 0.512 |
| 5 | 5 | 0.855 |
| 50 | 50 | 0.476 |
| 51 | 51 | 0.486 |
| 52 | 52 | 0.744 |
| 53 | 53 | 0.428 |
| 54 | 54 | 0.652 |
| 55 | 55 | 0.496 |
| 56 | 56 | 0.355 |
| 57 | 57 | 0.55 |
| 58 | 58 | 0.925 |
| 59 | 59 | 0.00578 |
| 6 | 6 | 0.706 |
| 60 | 60 | 0.285 |
| 61 | 61 | 0.548 |
| 62 | 62 | 0.554 |
| 63 | 63 | 0.238 |
| 64 | 64 | 0.172 |
| 65 | 65 | 0.0807 |
| 66 | 66 | 0.741 |
| 67 | 67 | 0.351 |
| 68 | 68 | 0.0601 |
| 69 | 69 | 0.17 |
| 7 | 7 | 0.84 |
| 70 | 70 | 0.212 |
| 71 | 71 | 0.138 |
| 72 | 72 | 0.977 |
| 73 | 73 | 0.0163 |
| 74 | 74 | 0.714 |
| 75 | 75 | 0.268 |
| 76 | 76 | 0.688 |
| 77 | 77 | 0.00454 |
| 78 | 78 | 0.454 |
| 79 | 79 | 0.00606 |
| 8 | 8 | 0.104 |
| 80 | 80 | 0.995 |
| 81 | 81 | 0.669 |
| 82 | 82 | 0.827 |
| 83 | 83 | 0.126 |
| 84 | 84 | 0.795 |
| 85 | 85 | 0.0525 |
| 86 | 86 | 0.496 |
| 87 | 87 | 0.0176 |
| 88 | 88 | 0.299 |
| 89 | 89 | 0.0301 |
| 9 | 9 | 0.213 |
| 90 | 90 | 0.803 |
| 91 | 91 | 0.369 |
| 92 | 92 | 0.491 |
| 93 | 93 | 0.989 |
| 94 | 94 | 0.885 |
| 95 | 95 | 0.0181 |
| 96 | 96 | 0.4 |
| 97 | 97 | 0.235 |
| 98 | 98 | 0.675 |
| 99 | 99 | 0.0472 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12044
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000171 human smooth muscle cell of the carotid artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002596 (smooth muscle cell of the carotid artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005396 (carotid artery segment)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000171 (human smooth muscle cell of the carotid artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
