FF:11435-118H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005288 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005288 | ||
|accession_numbers=CAGE;DRX008488;DRR009360;DRZ000785;DRZ002170;DRZ012135;DRZ013520 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037096;DRR041462;DRZ007104 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000172 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!2.16!144.49!SOX17;;chr6:134210243..134210257,+!p1@TCF21!1.72!51.39!TCF21;;chr20:6748325..6748352,+!p1@BMP2!1.42!35.81!BMP2;;chr17:1959369..1959388,+!p2@HIC1!1.36!57.29!HIC1;;chr8:11561684..11561751,+!p1@GATA4!1.34!20.64!GATA4;;chr11:34642612..34642646,+!p1@EHF!1.24!16.43!EHF;;chr11:65686802..65686818,+!p6@DRAP1!1.12!21.48!DRAP1;;chr16:86544113..86544145,+!p1@FOXF1!1.09!13.90!FOXF1;;chr15:83953397..83953425,-!p1@BNC1!1.08!12.64!BNC1;;chr18:19749541..19749557,+!p1@GATA6!1.03!30.75!GATA6;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.48!PRRX1;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.69!MAFK;;chr18:19749386..19749404,+!p2@GATA6!1.00!13.06!GATA6;;chr19:42636586..42636607,-!p1@POU2F2!0.97!23.59!POU2F2;;chr7:19157248..19157268,-!p1@TWIST1!0.97!23.59!TWIST1;;chr7:35293685..35293718,-!p1@TBX20!0.97!8.43!TBX20;;chr1:37940170..37940190,+!p1@ZC3H12A!0.96!102.37!ZC3H12A;;chr11:46299199..46299233,+!p1@CREB3L1!0.96!42.97!CREB3L1;;chr10:94449703..94449718,+!p1@HHEX!0.96!32.02!HHEX;;chr11:65687362..65687436,+!p3@DRAP1!0.95!37.49!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.92!12.64!TWIST2;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.00!PRRX1;;chr12:124873357..124873401,-!p1@NCOR2!0.89!82.15!NCOR2;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.43!TWIST1;;chr5:72744594..72744609,-!p1@FOXD1!0.84!28.65!FOXD1;;chr16:31076332..31076388,-!p3@ZNF668!0.84!5.90!ZNF668;;chr17:3571863..3571881,-!p1@TAX1BP3!0.83!444.85!TAX1BP3;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.32!PRRX1;;chr1:151032782..151032801,+!p4@MLLT11!0.82!11.80!MLLT11;;chr8:72756637..72756664,-!p3@MSC!0.81!6.32!MSC;;chr17:1958388..1958404,+!p1@HIC1!0.80!36.23!HIC1;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.01!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.80!14.74!ZFPM2;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.27!FOXD1;;chr2:239756671..239756732,+!p1@TWIST2!0.79!17.69!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!0.79!17.27!TBX2;;chr17:46622440..46622477,-!p5@HOXB2!0.79!5.90!HOXB2;;chr4:174450089..174450153,-!p2@HAND2!0.78!5.06!HAND2;;chr6:34204921..34204939,+!p3@HMGA1!0.77!163.03!HMGA1;;chr8:72756063..72756125,-!p1@MSC!0.77!10.53!MSC;;chr12:66218836..66218888,+!p1@HMGA2!0.76!49.29!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.43!CREB3L1;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.24!MLLT11;;chr10:131762504..131762555,-!p1@EBF3!0.75!4.63!EBF3;;chr4:174451370..174451387,-!p1@HAND2!0.75!4.63!HAND2;;chr15:67458491..67458505,+!p18@SMAD3!0.75!4.63!SMAD3;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.63!ZFY;;chr21:36260773..36260804,-!p7@RUNX1!0.74!6.32!RUNX1;;chr10:8096772..8096787,+!p2@GATA3!0.74!5.48!GATA3;;chr3:141087393..141087426,+!p3@ZBTB38!0.73!19.38!ZBTB38;;chr20:50721803..50721857,-!p2@ZFP64!0.73!7.16!ZFP64;;chr1:170632285..170632309,+!p1@PRRX1!0.73!5.06!PRRX1;;chr12:66218923..66218934,+!p14@HMGA2!0.72!4.21!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.71!6.32!MSC;;chr11:65687222..65687240,+!p7@DRAP1!0.71!5.48!DRAP1;;chr20:42543441..42543497,+!p1@TOX2!0.69!19.80!TOX2;;chr8:72756667..72756736,-!p2@MSC!0.68!6.32!MSC;;chr21:38071430..38071456,+!p1@SIM2!0.68!3.79!SIM2;;chr3:25469815..25469866,+!p3@RARB!0.68!3.79!RARB;;chr3:25470156..25470227,+!p2@RARB!0.68!3.79!RARB;;chr11:125034640..125034655,+!p1@PKNOX2!0.68!3.79!PKNOX2;;chr14:62162258..62162269,+!p2@HIF1A!0.66!39.60!HIF1A;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.96!HMGA2;;chr5:174151553..174151610,+!p1@MSX2!0.66!6.32!MSX2;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.17!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!0.65!21.06!HIF1A;;chr20:42543506..42543549,+!p2@TOX2!0.65!9.27!TOX2;;chr17:46622229..46622257,-!p6@HOXB2!0.65!4.21!HOXB2;;chr3:157823517..157823562,-!p1@SHOX2!0.65!3.79!SHOX2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.64!43.81!TAX1BP3;;chr15:67418119..67418162,+!p5@SMAD3!0.64!3.79!SMAD3;;chr2:113994526..113994556,-!p3@PAX8!0.64!3.37!PAX8;;chr10:35484053..35484076,+!p1@CREM!0.63!9.27!CREM;;chr9:35732647..35732678,+!p2@CREB3!0.62!20.64!CREB3;;chr7:44143925..44143970,+!p1@AEBP1!0.60!81.30!AEBP1;;chr12:27485762..27485776,+!p3@ARNTL2!0.60!9.27!ARNTL2;;chr2:200322654..200322707,-!p2@SATB2!0.60!4.63!SATB2;;chr11:46299186..46299195,+!p3@CREB3L1!0.60!3.37!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!0.60!2.95!RFX8;;chr2:119604456..119604501,-!p2@EN1!0.60!2.95!EN1;;chr8:40755333..40755352,-!p1@ZMAT4!0.60!2.95!ZMAT4;;chr8:55370720..55370733,+!p2@SOX17!0.60!2.95!SOX17;;chr9:16705069..16705086,-!p3@BNC2!0.60!2.95!BNC2;;chrY:21906594..21906622,-!p1@KDM5D!0.60!2.95!KDM5D;;chr12:124873852..124873881,-!p3@NCOR2!0.59!21.06!NCOR2;;chr5:72744562..72744573,-!p3@FOXD1!0.59!3.79!FOXD1;;chr18:53068911..53068935,-!p4@TCF4!0.59!3.37!TCF4;;chr12:115121962..115121987,-!p1@TBX3!0.58!28.65!TBX3;;chr16:86600426..86600441,+!p1@FOXC2!0.58!8.00!FOXC2;;chr8:106330696..106330719,+!p2@ZFPM2!0.58!3.79!ZFPM2;;chr17:46622205..46622218,-!p3@HOXB2!0.58!3.37!HOXB2;;chr11:65686776..65686787,+!p9@DRAP1!0.57!3.37!DRAP1;;chr8:49833948..49833973,-!p2@SNAI2!0.56!20.64!SNAI2;;chr11:61520075..61520136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XP1!0.24!1.69!FOXP1;;chr11:67007611..67007622,+!p6@KDM2A!0.24!1.26!KDM2A;;chr6:151712968..151712992,-!p5@ZBTB2!0.24!1.26!ZBTB2;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.24!1.26!GLIS2;;chrX:66763815..66763854,+!p2@AR!0.24!1.26!AR;;chr17:41623667..41623682,-!p8@ETV4!0.24!0.84!ETV4;;chr6:35465058..35465077,-!p2@TEAD3!0.24!0.84!TEAD3;;chr19:16435625..16435682,+!p1@KLF2!0.23!48.87!KLF2;;chr17:38256822..38256851,-!p1@NR1D1!0.23!11.37!NR1D1;;chr2:85360499..85360598,+!p1@TCF7L1!0.23!8.00!TCF7L1;;chr19:53758094..53758147,-!p1@ZNF677!0.23!5.06!ZNF677;;chr1:43148792..43148849,+!p2@YBX1!0.23!5.06!YBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.23!4.63!FOXP1;;chr10:94449675..94449694,+!p2@HHEX!0.23!3.37!HHEX;;chr11:695215..695231,-!p2@DEAF1!0.23!2.11!DEAF1;;chr2:85980951..85981004,+!p1@ATOH8!0.23!1.69!ATOH8;;chr17:41623009..41623053,-!p4@ETV4!0.23!1.69!ETV4;;chr1:27022578..27022589,+!p5@ARID1A!0.23!1.69!ARID1A;;chr1:38325227..38325246,-!p2@MTF1!0.23!1.26!MTF1;;chr16:30546275..30546297,-!p2@ZNF747!0.23!1.26!ZNF747;;chr12:19593515..19593573,+!p9@AEBP2!0.23!1.26!AEBP2;;chr12:72056800..72056834,+!p1@THAP2!0.23!1.26!THAP2;;chr15:31619119..31619131,+!p14@KLF13!0.23!0.84!KLF13;;chr16:88519743..88519754,+!p2@ZFPM1!0.23!0.84!ZFPM1;;chr19:13213511..13213545,-!p2@LYL1!0.23!0.84!LYL1;;chr22:42666429..42666436,-!p@chr22:42666429..42666436,-!0.23!0.84!TCF20;;chr7:100076744..100076749,-!p8@TSC22D4!0.23!0.84!TSC22D4;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.22!13.90!ZNF576;;chr19:42724436..42724507,+!p1@ZNF526!0.22!11.80!ZNF526;;chr8:123794102..123794160,+!p3@ZHX2!0.22!3.37!ZHX2;;chr8:48650982..48651023,-!p3@CEBPD!0.22!2.95!CEBPD;;chr18:3450293..3450304,+!p4@TGIF1!0.22!2.95!TGIF1;;chr18:51750928..51750942,-!p4@MBD2!0.22!2.95!MBD2;;chr19:926055..926068,+!p2@ARID3A!0.22!2.53!ARID3A;;chr1:151032142..151032195,+!p5@MLLT11!0.22!2.11!MLLT11;;chr12:53614155..53614187,-!p3@RARG!0.22!2.11!RARG;;chr14:74353454..74353469,+!p4@ZNF410!0.22!2.11!ZNF410;;chr9:109625229..109625282,+!p2@ZNF462!0.22!1.69!ZNF462;;chr2:121493492..121493537,+!p2@GLI2!0.22!1.69!GLI2;;chr6:28235131..28235151,+!p2@ZNF187!0.22!1.26!ZNF187;;chr8:135725369..135725388,-!p3@ZFAT!0.22!1.26!ZFAT;;chr11:65430586..65430593,-!p5@RELA!0.22!0.84!RELA;;chr12:3068957..3068978,+!p6@TEAD4!0.22!0.84!TEAD4;;chr14:35872414..35872425,-!p7@NFKBIA!0.22!0.84!NFKBIA;;chr19:59030961..59030974,-!p4@ZBTB45!0.22!0.84!ZBTB45;;chr2:28616471..28616478,+!p7@FOSL2!0.22!0.84!FOSL2;;chr18:3450161..3450183,+!p1@TGIF1!0.21!49.29!TGIF1;;chr11:64073022..64073056,+!p1@ESRRA!0.21!16.85!ESRRA;;chr6:130339710..130339745,+!p1@L3MBTL3!0.21!10.95!L3MBTL3;;chr4:2263861..2263883,-!p2@MXD4!0.21!8.00!MXD4;;chr17:41623692..41623715,-!p1@ETV4!0.21!5.48!ETV4;;chr10:77161533..77161546,-!p2@ZNF503!0.21!5.06!ZNF503;;chr7:17338324..17338341,+!p3@AHR!0.21!4.21!AHR;;chr6:134274322..134274342,+!p3@TBPL1!0.21!3.79!TBPL1;;chr1:164528445..164528459,+!p2@PBX1!0.21!3.79!PBX1;;chr12:51566562..51566584,-!p2@TFCP2!0.21!3.37!TFCP2;;chr1:59249645..59249656,-!p4@JUN!0.21!2.95!JUN;;chr16:3185125..3185173,+!p1@ZNF213!0.21!2.95!ZNF213;;chr1:151032833..151032850,+!p3@MLLT11!0.21!2.53!MLLT11;;chr11:62369383..62369399,-!p6@MTA2!0.21!2.53!MTA2;;chr11:64073006..64073017,+!p3@ESRRA!0.21!2.53!ESRRA;;chr19:52956798..52956843,+!p1@ZNF578!0.21!2.11!ZNF578;;chr7:150076370..150076396,+!p2@ZNF775!0.21!1.69!ZNF775;;chr9:4300016..4300039,-!p2@GLIS3!0.21!1.69!GLIS3;;chr12:125002827..125002855,-!p5@NCOR2!0.21!1.26!NCOR2;;chr14:35872926..35872951,-!p4@NFKBIA!0.21!1.26!NFKBIA;;chr15:37392703..37392717,-!p8@MEIS2!0.21!1.26!MEIS2;;chr15:96869292..96869320,+!p15@NR2F2!0.21!1.26!NR2F2;;chr4:103422076..103422117,+!p5@NFKB1!0.21!1.26!NFKB1;;chr8:103665947..103665981,-!p3@KLF10!0.21!1.26!KLF10;;chr18:56530595..56530606,+!p11@ZNF532!0.21!0.84!ZNF532;;chr9:4300004..4300015,-!p6@GLIS3!0.21!0.84!GLIS3;;chr2:101591314..101591333,+!p2@NPAS2!0.21!0.84!NPAS2;;chr2:231084820..231084836,-!p5@SP110!0.21!0.84!SP110;;chr3:185826286..185826318,-!p5@ETV5!0.21!0.84!ETV5;;chr19:56154958..56155027,+!p1@ZNF581!0.20!46.76!ZNF581;;chr5:149380256..149380343,+!p1@HMGXB3!0.20!42.13!HMGXB3;;chr19:56632592..56632670,-!p1@ZNF787!0.20!32.02!ZNF787;;chr19:57702846..57702891,+!p1@ZNF264!0.20!13.90!ZNF264;;chr8:144329092..144329140,+!p1@ZFP41!0.20!9.69!ZFP41;;chr22:38597987..38598021,+!p2@MAFF!0.20!8.00!MAFF;;chr19:56111680..56111716,+!p1@ZNF524!0.20!4.63!ZNF524;;chr19:58095501..58095535,+!p1@ZIK1!0.20!4.21!ZIK1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.20!3.37!ZBTB7A;;chr6:43337375..43337410,-!p3@ZNF318!0.20!2.53!ZNF318;;chr9:14314522..14314556,-!p3@NFIB!0.20!2.53!NFIB;;chr10:44101902..44101932,+!p2@ZNF485!0.20!2.11!ZNF485;;chr16:67063142..67063153,+!p4@CBFB!0.20!1.26!CBFB;;chr19:12512015..12512044,-!p2@ZNF799!0.20!1.26!ZNF799;;chr3:178789993..178790049,-!p5@ZMAT3!0.20!1.26!ZMAT3;;chr6:28220002..28220020,-!p3@ZKSCAN4!0.20!1.26!ZKSCAN4;;chr6:32158004..32158015,-!p2@PBX2!0.20!0.84!PBX2;;chr17:41623075..41623101,-!p9@ETV4!0.20!0.84!ETV4;;chr2:11605966..11605981,-!p3@E2F6!0.20!0.84!E2F6;;chr1:893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| 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XP1!0.24!1.69!FOXP1;;chr11:67007611..67007622,+!p6@KDM2A!0.24!1.26!KDM2A;;chr6:151712968..151712992,-!p5@ZBTB2!0.24!1.26!ZBTB2;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.24!1.26!GLIS2;;chrX:66763815..66763854,+!p2@AR!0.24!1.26!AR;;chr17:41623667..41623682,-!p8@ETV4!0.24!0.84!ETV4;;chr6:35465058..35465077,-!p2@TEAD3!0.24!0.84!TEAD3;;chr19:16435625..16435682,+!p1@KLF2!0.23!48.87!KLF2;;chr17:38256822..38256851,-!p1@NR1D1!0.23!11.37!NR1D1;;chr2:85360499..85360598,+!p1@TCF7L1!0.23!8.00!TCF7L1;;chr19:53758094..53758147,-!p1@ZNF677!0.23!5.06!ZNF677;;chr1:43148792..43148849,+!p2@YBX1!0.23!5.06!YBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.23!4.63!FOXP1;;chr10:94449675..94449694,+!p2@HHEX!0.23!3.37!HHEX;;chr11:695215..695231,-!p2@DEAF1!0.23!2.11!DEAF1;;chr2:85980951..85981004,+!p1@ATOH8!0.23!1.69!ATOH8;;chr17:41623009..41623053,-!p4@ETV4!0.23!1.69!ETV4;;chr1:27022578..27022589,+!p5@ARID1A!0.23!1.69!ARID1A;;chr1:38325227..38325246,-!p2@MTF1!0.23!1.26!MTF1;;chr16:30546275..30546297,-!p2@ZNF747!0.23!1.26!ZNF747;;chr12:19593515..19593573,+!p9@AEBP2!0.23!1.26!AEBP2;;chr12:72056800..72056834,+!p1@THAP2!0.23!1.26!THAP2;;chr15:31619119..31619131,+!p14@KLF13!0.23!0.84!KLF13;;chr16:88519743..88519754,+!p2@ZFPM1!0.23!0.84!ZFPM1;;chr19:13213511..13213545,-!p2@LYL1!0.23!0.84!LYL1;;chr22:42666429..42666436,-!p@chr22:42666429..42666436,-!0.23!0.84!TCF20;;chr7:100076744..100076749,-!p8@TSC22D4!0.23!0.84!TSC22D4;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.22!13.90!ZNF576;;chr19:42724436..42724507,+!p1@ZNF526!0.22!11.80!ZNF526;;chr8:123794102..123794160,+!p3@ZHX2!0.22!3.37!ZHX2;;chr8:48650982..48651023,-!p3@CEBPD!0.22!2.95!CEBPD;;chr18:3450293..3450304,+!p4@TGIF1!0.22!2.95!TGIF1;;chr18:51750928..51750942,-!p4@MBD2!0.22!2.95!MBD2;;chr19:926055..926068,+!p2@ARID3A!0.22!2.53!ARID3A;;chr1:151032142..151032195,+!p5@MLLT11!0.22!2.11!MLLT11;;chr12:53614155..53614187,-!p3@RARG!0.22!2.11!RARG;;chr14:74353454..74353469,+!p4@ZNF410!0.22!2.11!ZNF410;;chr9:109625229..109625282,+!p2@ZNF462!0.22!1.69!ZNF462;;chr2:121493492..121493537,+!p2@GLI2!0.22!1.69!GLI2;;chr6:28235131..28235151,+!p2@ZNF187!0.22!1.26!ZNF187;;chr8:135725369..135725388,-!p3@ZFAT!0.22!1.26!ZFAT;;chr11:65430586..65430593,-!p5@RELA!0.22!0.84!RELA;;chr12:3068957..3068978,+!p6@TEAD4!0.22!0.84!TEAD4;;chr14:35872414..35872425,-!p7@NFKBIA!0.22!0.84!NFKBIA;;chr19:59030961..59030974,-!p4@ZBTB45!0.22!0.84!ZBTB45;;chr2:28616471..28616478,+!p7@FOSL2!0.22!0.84!FOSL2;;chr18:3450161..3450183,+!p1@TGIF1!0.21!49.29!TGIF1;;chr11:64073022..64073056,+!p1@ESRRA!0.21!16.85!ESRRA;;chr6:130339710..130339745,+!p1@L3MBTL3!0.21!10.95!L3MBTL3;;chr4:2263861..2263883,-!p2@MXD4!0.21!8.00!MXD4;;chr17:41623692..41623715,-!p1@ETV4!0.21!5.48!ETV4;;chr10:77161533..77161546,-!p2@ZNF503!0.21!5.06!ZNF503;;chr7:17338324..17338341,+!p3@AHR!0.21!4.21!AHR;;chr6:134274322..134274342,+!p3@TBPL1!0.21!3.79!TBPL1;;chr1:164528445..164528459,+!p2@PBX1!0.21!3.79!PBX1;;chr12:51566562..51566584,-!p2@TFCP2!0.21!3.37!TFCP2;;chr1:59249645..59249656,-!p4@JUN!0.21!2.95!JUN;;chr16:3185125..3185173,+!p1@ZNF213!0.21!2.95!ZNF213;;chr1:151032833..151032850,+!p3@MLLT11!0.21!2.53!MLLT11;;chr11:62369383..62369399,-!p6@MTA2!0.21!2.53!MTA2;;chr11:64073006..64073017,+!p3@ESRRA!0.21!2.53!ESRRA;;chr19:52956798..52956843,+!p1@ZNF578!0.21!2.11!ZNF578;;chr7:150076370..150076396,+!p2@ZNF775!0.21!1.69!ZNF775;;chr9:4300016..4300039,-!p2@GLIS3!0.21!1.69!GLIS3;;chr12:125002827..125002855,-!p5@NCOR2!0.21!1.26!NCOR2;;chr14:35872926..35872951,-!p4@NFKBIA!0.21!1.26!NFKBIA;;chr15:37392703..37392717,-!p8@MEIS2!0.21!1.26!MEIS2;;chr15:96869292..96869320,+!p15@NR2F2!0.21!1.26!NR2F2;;chr4:103422076..103422117,+!p5@NFKB1!0.21!1.26!NFKB1;;chr8:103665947..103665981,-!p3@KLF10!0.21!1.26!KLF10;;chr18:56530595..56530606,+!p11@ZNF532!0.21!0.84!ZNF532;;chr9:4300004..4300015,-!p6@GLIS3!0.21!0.84!GLIS3;;chr2:101591314..101591333,+!p2@NPAS2!0.21!0.84!NPAS2;;chr2:231084820..231084836,-!p5@SP110!0.21!0.84!SP110;;chr3:185826286..185826318,-!p5@ETV5!0.21!0.84!ETV5;;chr19:56154958..56155027,+!p1@ZNF581!0.20!46.76!ZNF581;;chr5:149380256..149380343,+!p1@HMGXB3!0.20!42.13!HMGXB3;;chr19:56632592..56632670,-!p1@ZNF787!0.20!32.02!ZNF787;;chr19:57702846..57702891,+!p1@ZNF264!0.20!13.90!ZNF264;;chr8:144329092..144329140,+!p1@ZFP41!0.20!9.69!ZFP41;;chr22:38597987..38598021,+!p2@MAFF!0.20!8.00!MAFF;;chr19:56111680..56111716,+!p1@ZNF524!0.20!4.63!ZNF524;;chr19:58095501..58095535,+!p1@ZIK1!0.20!4.21!ZIK1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.20!3.37!ZBTB7A;;chr6:43337375..43337410,-!p3@ZNF318!0.20!2.53!ZNF318;;chr9:14314522..14314556,-!p3@NFIB!0.20!2.53!NFIB;;chr10:44101902..44101932,+!p2@ZNF485!0.20!2.11!ZNF485;;chr16:67063142..67063153,+!p4@CBFB!0.20!1.26!CBFB;;chr19:12512015..12512044,-!p2@ZNF799!0.20!1.26!ZNF799;;chr3:178789993..178790049,-!p5@ZMAT3!0.20!1.26!ZMAT3;;chr6:28220002..28220020,-!p3@ZKSCAN4!0.20!1.26!ZKSCAN4;;chr6:32158004..32158015,-!p2@PBX2!0.20!0.84!PBX2;;chr17:41623075..41623101,-!p9@ETV4!0.20!0.84!ETV4;;chr2:11605966..11605981,-!p3@E2F6!0.20!0.84!E2F6;;chr1:893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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002592;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003498;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Coronary%2520Artery%252c%2520donor3.CNhs12045.11435-118H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11435-118H4 | |id=FF:11435-118H4 | ||
|is_a=EFO:0002091;;FF:0000172 | |is_a=EFO:0002091;;FF:0000172 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12045 | |||
|library_id_phase_based=2:CNhs12045 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11435 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.TAGCTT.11435 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11435 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.TAGCTT.11435 | |||
|name=Smooth Muscle Cells - Coronary Artery, donor3 | |name=Smooth Muscle Cells - Coronary Artery, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12045,LSID838,release011,COMPLETED | |profile_hcage=CNhs12045,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA350-R10a | |rna_catalog_number=CA350-R10a | ||
| Line 57: | Line 82: | ||
|rna_tube_id=118H4 | |rna_tube_id=118H4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.TAGCTT | |||
|sample_age=39 | |sample_age=39 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=PPARG:1.78263440194;POU3F1..4:1.35826609183;ALX1:1.35781160448;ALX4:1.2056109421;HES1:1.15109548058;PAX1,9:1.05095077035;GTF2A1,2:1.00771868745;ONECUT1,2:0.989181715063;ZBTB6:0.988676026524;ZNF238:0.917293307186;SPZ1:0.849670507755;PBX1:0.831078083612;GCM1,2:0.821313594417;HOX{A5,B5}:0.817353158377;EBF1:0.799104740772;HSF1,2:0.778632792171;FOX{I1,J2}:0.755270379458;TLX1..3_NFIC{dimer}:0.740734336396;TFCP2:0.737208276042;NR5A1,2:0.70792911965;ATF6:0.683058237912;IKZF1:0.67684230879;GLI1..3:0.676675118558;SMAD1..7,9:0.67532774307;HOXA9_MEIS1:0.660083220297;EN1,2:0.654695301285;XCPE1{core}:0.64661578325;TFAP4:0.642081395731;PAX8:0.635966156414;RXRA_VDR{dimer}:0.608859899946;TP53:0.606799282623;NR3C1:0.581731187306;CRX:0.580746424065;FOXL1:0.580444824772;NFE2L2:0.531196133797;GFI1B:0.523623802179;FOXQ1:0.514876122334;NFATC1..3:0.512292816339;UFEwm:0.500468769845;AR:0.500173650134;TBP:0.492698249185;TBX4,5:0.488149436263;ELK1,4_GABP{A,B1}:0.486559401794;TEAD1:0.48243401719;NFE2L1:0.473508136435;TFAP2B:0.448461067583;ZIC1..3:0.436791563135;TFAP2{A,C}:0.425660950837;ZNF148:0.425625878757;CDC5L:0.405420985724;MYBL2:0.360837168543;NKX2-2,8:0.350221612743;TAL1_TCF{3,4,12}:0.347736021835;NANOG{mouse}:0.34007259383;SRF:0.331996111075;PAX5:0.323321907203;RXR{A,B,G}:0.318329591492;GZF1:0.312844986367;BACH2:0.305460734909;KLF4:0.283567170275;JUN:0.275618169423;XBP1:0.271465617341;ZNF423:0.263881146141;FOS_FOS{B,L1}_JUN{B,D}:0.261695719557;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.258813166879;HIF1A:0.250097428826;ESR1:0.228114179639;FOXM1:0.205244537138;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203478379147;STAT5{A,B}:0.201777746172;LHX3,4:0.195966555248;HMX1:0.193145431375;SOX17:0.17887091425;MAFB:0.142893788068;bHLH_family:0.136895669904;FOSL2:0.133524499331;ESRRA:0.133521549422;NFIX:0.125859822622;ARID5B:0.125327174009;HIC1:0.124486909675;REST:0.122159249162;HLF:0.11304605508;NKX3-2:0.10600615812;HNF1A:0.105377504461;TFDP1:0.105018743211;VSX1,2:0.101515997323;LEF1_TCF7_TCF7L1,2:0.100473047893;DBP:0.074849887157;POU1F1:0.0686345018533;POU6F1:0.0538362305971;AIRE:0.0371156913683;NHLH1,2:0.0356848794365;SP1:0.0114364519047;PAX2:-3.44259787082e-05;MZF1:-0.0109287846138;SOX{8,9,10}:-0.0164672862166;POU2F1..3:-0.0178200493699;ADNP_IRX_SIX_ZHX:-0.0246526278094;MTE{core}:-0.0270528502879;MYB:-0.028997171021;TLX2:-0.0412492581518;NFKB1_REL_RELA:-0.0432549963567;GTF2I:-0.0574438157566;POU5F1:-0.076464250036;NRF1:-0.0997494496421;PRRX1,2:-0.100094158547;PAX3,7:-0.130191137287;STAT2,4,6:-0.147388969803;PAX6:-0.148911137034;YY1:-0.152081070452;NFE2:-0.152382886715;PATZ1:-0.159096313649;PRDM1:-0.168409767601;HOX{A4,D4}:-0.177380194212;MAZ:-0.182976037318;ZNF143:-0.184726174321;NKX3-1:-0.190828796201;ZFP161:-0.196206889963;NANOG:-0.202812716077;ELF1,2,4:-0.209551989285;CEBPA,B_DDIT3:-0.216761239631;ETS1,2:-0.218113525111;MTF1:-0.223641872577;RFX1:-0.22728874544;RUNX1..3:-0.24468645328;GATA6:-0.245887342432;RORA:-0.257962689577;HMGA1,2:-0.260478758092;GFI1:-0.288003370704;HNF4A_NR2F1,2:-0.293117279586;LMO2:-0.297957700671;SOX2:-0.313831823601;AHR_ARNT_ARNT2:-0.31792481306;T:-0.319872304782;SPI1:-0.325591092356;MYFfamily:-0.360710130651;MEF2{A,B,C,D}:-0.379370254588;MED-1{core}:-0.380066144899;ZNF384:-0.382388631294;SPIB:-0.399017347389;EVI1:-0.423612274102;EGR1..3:-0.4275066337;ATF2:-0.440137375335;OCT4_SOX2{dimer}:-0.446929165645;E2F1..5:-0.454923544507;RREB1:-0.458354852738;HOX{A6,A7,B6,B7}:-0.466163748018;GATA4:-0.472555512607;FOXD3:-0.480216215239;HBP1_HMGB_SSRP1_UBTF:-0.497247032573;SOX5:-0.505761895431;FOXA2:-0.510660348008;NFIL3:-0.515720757653;HAND1,2:-0.552394457797;NR1H4:-0.559136738308;SREBF1,2:-0.559993647838;NR6A1:-0.567464518071;TGIF1:-0.596668302308;SNAI1..3:-0.621547908513;NKX6-1,2:-0.630251632926;ZEB1:-0.64803122591;TEF:-0.649640660762;TOPORS:-0.661931462917;EP300:-0.734415451608;CREB1:-0.74004844094;IRF1,2:-0.741281041356;BREu{core}:-0.750531634136;NFY{A,B,C}:-0.770959305023;IRF7:-0.808406485138;ATF4:-0.821649206732;NKX2-1,4:-0.827327026232;DMAP1_NCOR{1,2}_SMARC:-0.828957406318;FOX{D1,D2}:-0.851221306266;RFX2..5_RFXANK_RFXAP:-0.857622480592;ATF5_CREB3:-0.861628401084;CUX2:-0.87572846511;MYOD1:-0.887396943814;IKZF2:-0.905151299293;FOXO1,3,4:-0.991454921856;NKX2-3_NKX2-5:-0.998031646545;FOXP1:-1.00557069836;CDX1,2,4:-1.00713678935;PDX1:-1.03330111585;PITX1..3:-1.04405066777;FOX{F1,F2,J1}:-1.05469629897;PAX4:-1.05494901249;FOXN1:-1.08582140599;ZBTB16:-1.10885148406;FOXP3:-1.27021228525;BPTF:-1.38292352791;STAT1,3:-1.47639818322;RBPJ:-1.55447558533 | |top_motifs=PPARG:1.78263440194;POU3F1..4:1.35826609183;ALX1:1.35781160448;ALX4:1.2056109421;HES1:1.15109548058;PAX1,9:1.05095077035;GTF2A1,2:1.00771868745;ONECUT1,2:0.989181715063;ZBTB6:0.988676026524;ZNF238:0.917293307186;SPZ1:0.849670507755;PBX1:0.831078083612;GCM1,2:0.821313594417;HOX{A5,B5}:0.817353158377;EBF1:0.799104740772;HSF1,2:0.778632792171;FOX{I1,J2}:0.755270379458;TLX1..3_NFIC{dimer}:0.740734336396;TFCP2:0.737208276042;NR5A1,2:0.70792911965;ATF6:0.683058237912;IKZF1:0.67684230879;GLI1..3:0.676675118558;SMAD1..7,9:0.67532774307;HOXA9_MEIS1:0.660083220297;EN1,2:0.654695301285;XCPE1{core}:0.64661578325;TFAP4:0.642081395731;PAX8:0.635966156414;RXRA_VDR{dimer}:0.608859899946;TP53:0.606799282623;NR3C1:0.581731187306;CRX:0.580746424065;FOXL1:0.580444824772;NFE2L2:0.531196133797;GFI1B:0.523623802179;FOXQ1:0.514876122334;NFATC1..3:0.512292816339;UFEwm:0.500468769845;AR:0.500173650134;TBP:0.492698249185;TBX4,5:0.488149436263;ELK1,4_GABP{A,B1}:0.486559401794;TEAD1:0.48243401719;NFE2L1:0.473508136435;TFAP2B:0.448461067583;ZIC1..3:0.436791563135;TFAP2{A,C}:0.425660950837;ZNF148:0.425625878757;CDC5L:0.405420985724;MYBL2:0.360837168543;NKX2-2,8:0.350221612743;TAL1_TCF{3,4,12}:0.347736021835;NANOG{mouse}:0.34007259383;SRF:0.331996111075;PAX5:0.323321907203;RXR{A,B,G}:0.318329591492;GZF1:0.312844986367;BACH2:0.305460734909;KLF4:0.283567170275;JUN:0.275618169423;XBP1:0.271465617341;ZNF423:0.263881146141;FOS_FOS{B,L1}_JUN{B,D}:0.261695719557;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.258813166879;HIF1A:0.250097428826;ESR1:0.228114179639;FOXM1:0.205244537138;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203478379147;STAT5{A,B}:0.201777746172;LHX3,4:0.195966555248;HMX1:0.193145431375;SOX17:0.17887091425;MAFB:0.142893788068;bHLH_family:0.136895669904;FOSL2:0.133524499331;ESRRA:0.133521549422;NFIX:0.125859822622;ARID5B:0.125327174009;HIC1:0.124486909675;REST:0.122159249162;HLF:0.11304605508;NKX3-2:0.10600615812;HNF1A:0.105377504461;TFDP1:0.105018743211;VSX1,2:0.101515997323;LEF1_TCF7_TCF7L1,2:0.100473047893;DBP:0.074849887157;POU1F1:0.0686345018533;POU6F1:0.0538362305971;AIRE:0.0371156913683;NHLH1,2:0.0356848794365;SP1:0.0114364519047;PAX2:-3.44259787082e-05;MZF1:-0.0109287846138;SOX{8,9,10}:-0.0164672862166;POU2F1..3:-0.0178200493699;ADNP_IRX_SIX_ZHX:-0.0246526278094;MTE{core}:-0.0270528502879;MYB:-0.028997171021;TLX2:-0.0412492581518;NFKB1_REL_RELA:-0.0432549963567;GTF2I:-0.0574438157566;POU5F1:-0.076464250036;NRF1:-0.0997494496421;PRRX1,2:-0.100094158547;PAX3,7:-0.130191137287;STAT2,4,6:-0.147388969803;PAX6:-0.148911137034;YY1:-0.152081070452;NFE2:-0.152382886715;PATZ1:-0.159096313649;PRDM1:-0.168409767601;HOX{A4,D4}:-0.177380194212;MAZ:-0.182976037318;ZNF143:-0.184726174321;NKX3-1:-0.190828796201;ZFP161:-0.196206889963;NANOG:-0.202812716077;ELF1,2,4:-0.209551989285;CEBPA,B_DDIT3:-0.216761239631;ETS1,2:-0.218113525111;MTF1:-0.223641872577;RFX1:-0.22728874544;RUNX1..3:-0.24468645328;GATA6:-0.245887342432;RORA:-0.257962689577;HMGA1,2:-0.260478758092;GFI1:-0.288003370704;HNF4A_NR2F1,2:-0.293117279586;LMO2:-0.297957700671;SOX2:-0.313831823601;AHR_ARNT_ARNT2:-0.31792481306;T:-0.319872304782;SPI1:-0.325591092356;MYFfamily:-0.360710130651;MEF2{A,B,C,D}:-0.379370254588;MED-1{core}:-0.380066144899;ZNF384:-0.382388631294;SPIB:-0.399017347389;EVI1:-0.423612274102;EGR1..3:-0.4275066337;ATF2:-0.440137375335;OCT4_SOX2{dimer}:-0.446929165645;E2F1..5:-0.454923544507;RREB1:-0.458354852738;HOX{A6,A7,B6,B7}:-0.466163748018;GATA4:-0.472555512607;FOXD3:-0.480216215239;HBP1_HMGB_SSRP1_UBTF:-0.497247032573;SOX5:-0.505761895431;FOXA2:-0.510660348008;NFIL3:-0.515720757653;HAND1,2:-0.552394457797;NR1H4:-0.559136738308;SREBF1,2:-0.559993647838;NR6A1:-0.567464518071;TGIF1:-0.596668302308;SNAI1..3:-0.621547908513;NKX6-1,2:-0.630251632926;ZEB1:-0.64803122591;TEF:-0.649640660762;TOPORS:-0.661931462917;EP300:-0.734415451608;CREB1:-0.74004844094;IRF1,2:-0.741281041356;BREu{core}:-0.750531634136;NFY{A,B,C}:-0.770959305023;IRF7:-0.808406485138;ATF4:-0.821649206732;NKX2-1,4:-0.827327026232;DMAP1_NCOR{1,2}_SMARC:-0.828957406318;FOX{D1,D2}:-0.851221306266;RFX2..5_RFXANK_RFXAP:-0.857622480592;ATF5_CREB3:-0.861628401084;CUX2:-0.87572846511;MYOD1:-0.887396943814;IKZF2:-0.905151299293;FOXO1,3,4:-0.991454921856;NKX2-3_NKX2-5:-0.998031646545;FOXP1:-1.00557069836;CDX1,2,4:-1.00713678935;PDX1:-1.03330111585;PITX1..3:-1.04405066777;FOX{F1,F2,J1}:-1.05469629897;PAX4:-1.05494901249;FOXN1:-1.08582140599;ZBTB16:-1.10885148406;FOXP3:-1.27021228525;BPTF:-1.38292352791;STAT1,3:-1.47639818322;RBPJ:-1.55447558533 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11435-118H4;search_select_hide=table117:FF:11435-118H4 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Smooth Muscle Cells - Coronary Artery, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12045 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12045
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12045
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.833 |
| 10 | 10 | 0.211 |
| 100 | 100 | 0.816 |
| 101 | 101 | 0.197 |
| 102 | 102 | 0.987 |
| 103 | 103 | 0.143 |
| 104 | 104 | 0.515 |
| 105 | 105 | 0.487 |
| 106 | 106 | 0.351 |
| 107 | 107 | 0.0804 |
| 108 | 108 | 0.28 |
| 109 | 109 | 0.0696 |
| 11 | 11 | 0.116 |
| 110 | 110 | 0.21 |
| 111 | 111 | 0.339 |
| 112 | 112 | 0.783 |
| 113 | 113 | 0.0256 |
| 114 | 114 | 0.536 |
| 115 | 115 | 0.0817 |
| 116 | 116 | 0.039 |
| 117 | 117 | 0.807 |
| 118 | 118 | 0.714 |
| 119 | 119 | 0.159 |
| 12 | 12 | 0.905 |
| 120 | 120 | 0.0329 |
| 121 | 121 | 0.959 |
| 122 | 122 | 0.97 |
| 123 | 123 | 0.0186 |
| 124 | 124 | 0.334 |
| 125 | 125 | 0.709 |
| 126 | 126 | 0.699 |
| 127 | 127 | 0.719 |
| 128 | 128 | 0.283 |
| 129 | 129 | 0.704 |
| 13 | 13 | 0.648 |
| 130 | 130 | 0.239 |
| 131 | 131 | 0.791 |
| 132 | 132 | 0.867 |
| 133 | 133 | 0.417 |
| 134 | 134 | 0.238 |
| 135 | 135 | 0.11 |
| 136 | 136 | 0.152 |
| 137 | 137 | 0.632 |
| 138 | 138 | 0.511 |
| 139 | 139 | 0.397 |
| 14 | 14 | 0.755 |
| 140 | 140 | 0.668 |
| 141 | 141 | 0.713 |
| 142 | 142 | 0.426 |
| 143 | 143 | 0.00959 |
| 144 | 144 | 0.903 |
| 145 | 145 | 0.417 |
| 146 | 146 | 0.421 |
| 147 | 147 | 0.184 |
| 148 | 148 | 0.615 |
| 149 | 149 | 0.113 |
| 15 | 15 | 0.687 |
| 150 | 150 | 0.134 |
| 151 | 151 | 0.634 |
| 152 | 152 | 0.00995 |
| 153 | 153 | 0.249 |
| 154 | 154 | 0.418 |
| 155 | 155 | 0.117 |
| 156 | 156 | 0.962 |
| 157 | 157 | 0.407 |
| 158 | 158 | 0.0542 |
| 159 | 159 | 0.486 |
| 16 | 16 | 0.123 |
| 160 | 160 | 0.309 |
| 161 | 161 | 0.55 |
| 162 | 162 | 0.902 |
| 163 | 163 | 0.947 |
| 164 | 164 | 0.473 |
| 165 | 165 | 0.534 |
| 166 | 166 | 0.999 |
| 167 | 167 | 0.618 |
| 168 | 168 | 0.976 |
| 169 | 169 | 0.0828 |
| 17 | 17 | 0.128 |
| 18 | 18 | 0.0717 |
| 19 | 19 | 0.227 |
| 2 | 2 | 0.0874 |
| 20 | 20 | 0.365 |
| 21 | 21 | 0.967 |
| 22 | 22 | 0.192 |
| 23 | 23 | 0.12 |
| 24 | 24 | 0.279 |
| 25 | 25 | 0.388 |
| 26 | 26 | 0.214 |
| 27 | 27 | 0.454 |
| 28 | 28 | 0.267 |
| 29 | 29 | 0.481 |
| 3 | 3 | 0.58 |
| 30 | 30 | 0.216 |
| 31 | 31 | 0.587 |
| 32 | 32 | 2.0821e-5 |
| 33 | 33 | 0.891 |
| 34 | 34 | 0.194 |
| 35 | 35 | 0.842 |
| 36 | 36 | 0.289 |
| 37 | 37 | 0.095 |
| 38 | 38 | 0.653 |
| 39 | 39 | 0.552 |
| 4 | 4 | 0.825 |
| 40 | 40 | 0.541 |
| 41 | 41 | 0.283 |
| 42 | 42 | 0.98 |
| 43 | 43 | 0.517 |
| 44 | 44 | 0.161 |
| 45 | 45 | 0.297 |
| 46 | 46 | 0.258 |
| 47 | 47 | 0.588 |
| 48 | 48 | 0.38 |
| 49 | 49 | 0.97 |
| 5 | 5 | 0.924 |
| 50 | 50 | 0.607 |
| 51 | 51 | 0.73 |
| 52 | 52 | 0.901 |
| 53 | 53 | 0.367 |
| 54 | 54 | 0.686 |
| 55 | 55 | 0.325 |
| 56 | 56 | 0.886 |
| 57 | 57 | 0.942 |
| 58 | 58 | 0.4 |
| 59 | 59 | 0.0554 |
| 6 | 6 | 0.989 |
| 60 | 60 | 0.851 |
| 61 | 61 | 0.923 |
| 62 | 62 | 0.898 |
| 63 | 63 | 0.482 |
| 64 | 64 | 0.7 |
| 65 | 65 | 0.0655 |
| 66 | 66 | 0.856 |
| 67 | 67 | 0.429 |
| 68 | 68 | 0.383 |
| 69 | 69 | 0.647 |
| 7 | 7 | 0.879 |
| 70 | 70 | 0.658 |
| 71 | 71 | 0.878 |
| 72 | 72 | 0.728 |
| 73 | 73 | 0.00118 |
| 74 | 74 | 0.56 |
| 75 | 75 | 0.681 |
| 76 | 76 | 0.58 |
| 77 | 77 | 5.83809e-4 |
| 78 | 78 | 0.685 |
| 79 | 79 | 0.146 |
| 8 | 8 | 0.0824 |
| 80 | 80 | 0.875 |
| 81 | 81 | 0.852 |
| 82 | 82 | 0.762 |
| 83 | 83 | 0.927 |
| 84 | 84 | 0.804 |
| 85 | 85 | 0.246 |
| 86 | 86 | 0.599 |
| 87 | 87 | 0.00267 |
| 88 | 88 | 0.712 |
| 89 | 89 | 0.00258 |
| 9 | 9 | 0.246 |
| 90 | 90 | 0.619 |
| 91 | 91 | 0.832 |
| 92 | 92 | 0.307 |
| 93 | 93 | 0.0656 |
| 94 | 94 | 0.592 |
| 95 | 95 | 0.0241 |
| 96 | 96 | 0.653 |
| 97 | 97 | 0.41 |
| 98 | 98 | 0.715 |
| 99 | 99 | 0.0124 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12045
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000172 human smooth muscle cell of coronary artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
