FF:11439-118H8: Difference between revisions

Latest revision as of 18:01, 4 June 2020

Name:	Smooth Muscle Cells - Umbilical Artery, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12049
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical artery
dev stage	infant
sex	female
age	Neonatal
cell type	smooth muscle cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1447
catalog number	CA252-R10n
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005184

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12049		CAGE		DRX008509		DRR009381

Accession ID Hg19

Library id		BAM		CTSS
CNhs12049		DRZ000806		DRZ002191

Accession ID Hg38

Library id		BAM		CTSS
CNhs12049		DRZ012156		DRZ013541

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005184

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.TAGCTT		sRNA-Seq		DRX037233		DRR041599

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.TAGCTT		DRZ007241

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0997
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0365
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.266
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00251
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.418
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.285
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.341
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.187
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.768
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.328
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.108
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.582
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.108
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.718
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.822
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.472
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.328
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12049

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.955
MA0003.1	MA0003.1	0.288
MA0004.1	MA0004.1	0.493
MA0006.1	MA0006.1	0.191
MA0007.1	MA0007.1	0.108
MA0009.1	MA0009.1	0.286
MA0014.1	MA0014.1	0.704
MA0017.1	MA0017.1	0.735
MA0018.2	MA0018.2	0.00188
MA0019.1	MA0019.1	0.397
MA0024.1	MA0024.1	0.422
MA0025.1	MA0025.1	0.102
MA0027.1	MA0027.1	0.949
MA0028.1	MA0028.1	0.368
MA0029.1	MA0029.1	0.286
MA0030.1	MA0030.1	0.00283
MA0031.1	MA0031.1	1.4406e-4
MA0035.2	MA0035.2	0.678
MA0038.1	MA0038.1	0.756
MA0039.2	MA0039.2	0.972
MA0040.1	MA0040.1	0.395
MA0041.1	MA0041.1	0.629
MA0042.1	MA0042.1	0.758
MA0043.1	MA0043.1	1.24394e-4
MA0046.1	MA0046.1	0.33
MA0047.2	MA0047.2	0.21
MA0048.1	MA0048.1	0.0738
MA0050.1	MA0050.1	4.57502e-8
MA0051.1	MA0051.1	8.62044e-4
MA0052.1	MA0052.1	0.953
MA0055.1	MA0055.1	0.0235
MA0057.1	MA0057.1	0.116
MA0058.1	MA0058.1	0.166
MA0059.1	MA0059.1	0.349
MA0060.1	MA0060.1	0.406
MA0061.1	MA0061.1	0.973
MA0062.2	MA0062.2	0.598
MA0065.2	MA0065.2	0.243
MA0066.1	MA0066.1	0.238
MA0067.1	MA0067.1	0.0067
MA0068.1	MA0068.1	0.649
MA0069.1	MA0069.1	0.786
MA0070.1	MA0070.1	0.405
MA0071.1	MA0071.1	0.404
MA0072.1	MA0072.1	0.828
MA0073.1	MA0073.1	0.706
MA0074.1	MA0074.1	0.288
MA0076.1	MA0076.1	0.819
MA0077.1	MA0077.1	0.0893
MA0078.1	MA0078.1	0.733
MA0079.2	MA0079.2	0.753
MA0080.2	MA0080.2	5.36038e-6
MA0081.1	MA0081.1	0.0663
MA0083.1	MA0083.1	4.4469e-5
MA0084.1	MA0084.1	0.997
MA0087.1	MA0087.1	0.773
MA0088.1	MA0088.1	0.337
MA0090.1	MA0090.1	0.0409
MA0091.1	MA0091.1	0.231
MA0092.1	MA0092.1	0.341
MA0093.1	MA0093.1	0.428
MA0099.2	MA0099.2	4.32103e-6
MA0100.1	MA0100.1	0.237
MA0101.1	MA0101.1	0.449
MA0102.2	MA0102.2	0.00307
MA0103.1	MA0103.1	0.313
MA0104.2	MA0104.2	0.407
MA0105.1	MA0105.1	0.655
MA0106.1	MA0106.1	0.205
MA0107.1	MA0107.1	0.673
MA0108.2	MA0108.2	4.14041e-4
MA0111.1	MA0111.1	0.0419
MA0112.2	MA0112.2	0.0479
MA0113.1	MA0113.1	0.334
MA0114.1	MA0114.1	0.905
MA0115.1	MA0115.1	0.685
MA0116.1	MA0116.1	0.596
MA0117.1	MA0117.1	0.432
MA0119.1	MA0119.1	0.352
MA0122.1	MA0122.1	0.589
MA0124.1	MA0124.1	0.486
MA0125.1	MA0125.1	0.41
MA0131.1	MA0131.1	0.729
MA0135.1	MA0135.1	0.187
MA0136.1	MA0136.1	3.19738e-5
MA0137.2	MA0137.2	0.0229
MA0138.2	MA0138.2	0.397
MA0139.1	MA0139.1	0.433
MA0140.1	MA0140.1	0.921
MA0141.1	MA0141.1	0.2
MA0142.1	MA0142.1	0.747
MA0143.1	MA0143.1	0.305
MA0144.1	MA0144.1	0.517
MA0145.1	MA0145.1	0.272
MA0146.1	MA0146.1	0.218
MA0147.1	MA0147.1	0.897
MA0148.1	MA0148.1	0.343
MA0149.1	MA0149.1	0.597
MA0150.1	MA0150.1	0.95
MA0152.1	MA0152.1	0.731
MA0153.1	MA0153.1	0.856
MA0154.1	MA0154.1	0.388
MA0155.1	MA0155.1	0.0555
MA0156.1	MA0156.1	0.135
MA0157.1	MA0157.1	0.0062
MA0159.1	MA0159.1	0.848
MA0160.1	MA0160.1	0.977
MA0162.1	MA0162.1	0.0465
MA0163.1	MA0163.1	0.0532
MA0164.1	MA0164.1	0.519
MA0258.1	MA0258.1	0.108
MA0259.1	MA0259.1	0.699

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12049

Novel motif	Logo	P-value
1	1	0.744
10	10	0.476
100	100	0.415
101	101	0.0651
102	102	0.798
103	103	0.412
104	104	0.294
105	105	0.801
106	106	0.13
107	107	0.0217
108	108	0.973
109	109	0.0232
11	11	0.0633
110	110	0.0879
111	111	0.639
112	112	0.432
113	113	0.0311
114	114	0.868
115	115	0.02
116	116	0.0169
117	117	0.42
118	118	0.943
119	119	0.499
12	12	0.683
120	120	0.0492
121	121	0.436
122	122	0.731
123	123	0.0202
124	124	0.465
125	125	0.84
126	126	0.959
127	127	0.796
128	128	0.352
129	129	0.589
13	13	0.674
130	130	0.478
131	131	0.441
132	132	0.348
133	133	0.713
134	134	0.284
135	135	0.509
136	136	0.447
137	137	0.0723
138	138	0.382
139	139	0.878
14	14	0.354
140	140	0.712
141	141	0.57
142	142	0.567
143	143	0.00845
144	144	0.729
145	145	0.45
146	146	0.672
147	147	0.0611
148	148	0.362
149	149	0.0383
15	15	0.662
150	150	0.0753
151	151	0.919
152	152	0.0427
153	153	0.399
154	154	0.26
155	155	0.1
156	156	0.934
157	157	0.143
158	158	0.0157
159	159	0.415
16	16	0.163
160	160	0.017
161	161	0.371
162	162	0.169
163	163	0.928
164	164	0.711
165	165	0.321
166	166	0.37
167	167	0.328
168	168	0.963
169	169	0.0848
17	17	0.16
18	18	0.368
19	19	0.0808
2	2	0.236
20	20	0.464
21	21	0.648
22	22	0.186
23	23	0.476
24	24	0.318
25	25	0.513
26	26	0.225
27	27	0.345
28	28	0.166
29	29	0.473
3	3	0.635
30	30	0.233
31	31	0.577
32	32	2.88729e-7
33	33	0.753
34	34	0.236
35	35	0.79
36	36	0.735
37	37	0.0795
38	38	0.96
39	39	0.257
4	4	0.524
40	40	0.0766
41	41	0.776
42	42	0.86
43	43	0.669
44	44	0.1
45	45	0.487
46	46	0.169
47	47	0.475
48	48	0.136
49	49	0.725
5	5	0.556
50	50	0.386
51	51	0.986
52	52	0.867
53	53	0.268
54	54	0.992
55	55	0.702
56	56	0.497
57	57	0.878
58	58	0.327
59	59	0.0223
6	6	0.996
60	60	0.806
61	61	0.599
62	62	0.707
63	63	0.333
64	64	0.167
65	65	0.167
66	66	0.445
67	67	0.905
68	68	0.00584
69	69	0.377
7	7	0.744
70	70	0.973
71	71	0.546
72	72	0.317
73	73	0.00859
74	74	0.224
75	75	0.394
76	76	0.207
77	77	0.0108
78	78	0.746
79	79	0.0061
8	8	0.0479
80	80	0.933
81	81	0.934
82	82	0.694
83	83	0.749
84	84	0.742
85	85	0.845
86	86	0.872
87	87	0.0129
88	88	0.159
89	89	0.367
9	9	0.291
90	90	0.0759
91	91	0.827
92	92	0.777
93	93	0.595
94	94	0.851
95	95	0.0611
96	96	0.594
97	97	0.928
98	98	0.987
99	99	3.31206e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12049

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000176 human smooth muscle cell of umbilical artery sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002594 (smooth muscle cell of the umbilical artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001310 (umbilical artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000176 (human smooth muscle cell of umbilical artery sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005184
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005184
+|accession_numbers=CAGE;DRX008509;DRR009381;DRZ000806;DRZ002191;DRZ012156;DRZ013541
+|accession_numbers_RNASeq=sRNA-Seq;DRX037233;DRR041599;DRZ007241
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0001310,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002594
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:55370487..55370503,+!p1@SOX17!1.99!97.75!SOX17;;chr4:174451370..174451387,-!p1@HAND2!1.73!52.96!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.24!ZBED1;;chr6:134210243..134210257,+!p1@TCF21!1.28!18.03!TCF21;;chr11:46299539..46299620,+!p2@CREB3L1!1.25!28.45!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.24!42.82!HIC1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.97!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.19!14.37!HOXC5;;chr6:34204921..34204939,+!p3@HMGA1!1.18!414.66!HMGA1;;chr1:170633348..170633399,+!p2@PRRX1!1.17!18.87!PRRX1;;chr4:81118647..81118666,+!p1@PRDM8!1.17!18.31!PRDM8;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.24!HAND2;;chr5:72744594..72744609,-!p1@FOXD1!1.12!56.34!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.12!20.28!FOXD1;;chr2:176969228..176969260,+!p1@HOXD11!1.11!11.83!HOXD11;;chr20:30433396..30433414,-!p1@FOXS1!1.11!11.83!FOXS1;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.68!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!1.06!10.42!PITX2;;chr8:11561684..11561751,+!p1@GATA4!1.05!10.14!GATA4;;chr18:19749541..19749557,+!p1@GATA6!1.02!30.42!GATA6;;chr20:42543441..42543497,+!p1@TOX2!1.00!41.69!TOX2;;chr19:45260775..45260838,+!p5@BCL3!1.00!11.83!BCL3;;chr17:1958388..1958404,+!p1@HIC1!0.98!55.78!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.56!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.42!FOXF1;;chr1:170633262..170633285,+!p3@PRRX1!0.97!9.58!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.41!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!0.94!19.44!FOXC2;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.35!ENO1;;chr2:239756739..239756755,+!p2@TWIST2!0.93!13.24!TWIST2;;chr12:54378923..54378966,+!p1@HOXC10!0.92!7.32!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.92!7.32!HOXC10;;chr7:1577899..1577943,+!p3@MAFK!0.91!7.04!MAFK;;chr12:54380036..54380091,+!p4@HOXC10!0.89!6.76!HOXC10;;chr20:42543506..42543549,+!p2@TOX2!0.87!16.06!TOX2;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.04!BNC1;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.44!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr7:27224842..27224872,-!p1@HOXA11!0.84!5.92!HOXA11;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.92!TBX20;;chr1:8938709..8938720,-!p3@ENO1!0.83!299.16!ENO1;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.92!DRAP1;;chr11:65687362..65687436,+!p3@DRAP1!0.81!26.48!DRAP1;;chr4:81105027..81105039,+!p3@PRDM8!0.81!6.48!PRDM8;;chr17:59477233..59477263,+!p1@TBX2!0.80!17.75!TBX2;;chr7:19157248..19157268,-!p1@TWIST1!0.80!15.49!TWIST1;;chr2:5832508..5832524,+!p1@SOX11!0.80!5.35!SOX11;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.70!CREB3;;chr4:174451350..174451363,-!p3@HAND2!0.78!5.07!HAND2;;chr16:86600870..86600921,+!p2@FOXC2!0.78!5.07!FOXC2;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.90!TWIST2;;chr18:19749386..19749404,+!p2@GATA6!0.77!7.32!GATA6;;chr12:124873357..124873401,-!p1@NCOR2!0.76!60.28!NCOR2;;chr2:102091144..102091183,-!p2@RFX8!0.76!4.79!RFX8;;chr7:44143925..44143970,+!p1@AEBP1!0.74!111.27!AEBP1;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.52!POU2F2;;chr12:27485762..27485776,+!p3@ARNTL2!0.74!12.96!ARNTL2;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.07!PRRX1;;chr7:27224795..27224840,-!p2@HOXA11!0.74!4.51!HOXA11;;chr17:59477197..59477212,+!p2@TBX2!0.73!7.89!TBX2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.72!341.13!TAX1BP3;;chr4:81104985..81105005,+!p4@PRDM8!0.72!5.35!PRDM8;;chr7:150945865..150945896,-!p4@SMARCD3!0.72!4.23!SMARCD3;;chr8:145159846..145159889,+!p6@MAF1!0.71!6.20!MAF1;;chr7:44143978..44143989,+!p2@AEBP1!0.69!7.61!AEBP1;;chr6:34204672..34204692,+!p1@HMGA1!0.68!492.69!HMGA1;;chr11:65667846..65667868,-!p1@FOSL1!0.68!115.21!FOSL1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!52.11!MLLT11;;chr1:151032922..151032951,+!p2@MLLT11!0.68!6.76!MLLT11;;chr5:134369905..134369972,-!p1@PITX1!0.68!6.20!PITX1;;chr11:46299186..46299195,+!p3@CREB3L1!0.67!4.23!CREB3L1;;chr10:131762504..131762555,-!p1@EBF3!0.67!3.66!EBF3;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.66!HOXA7;;chr1:170633058..170633084,+!p5@PRRX1!0.67!3.66!PRRX1;;chr10:94449703..94449718,+!p1@HHEX!0.66!15.77!HHEX;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.76!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.66!5.63!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.65!53.52!HMGA1;;chr11:65687158..65687216,+!p4@DRAP1!0.65!23.10!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.35!HMGA2;;chr19:38720294..38720348,-!p1@DPF1!0.65!4.51!DPF1;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.51!FOXD1;;chr5:72743793..72743855,-!p4@FOXD1!0.65!4.23!FOXD1;;chr2:102091566..102091581,-!p1@RFX8!0.64!3.38!RFX8;;chr4:111558135..111558198,-!p2@PITX2!0.64!3.38!PITX2;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.30!TWIST1;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.83!TBX3;;chr17:41623692..41623715,-!p1@ETV4!0.62!15.77!ETV4;;chr9:35732514..35732530,+!p5@CREB3!0.62!4.79!CREB3;;chr1:8926369..8926385,-!p12@ENO1!0.62!4.51!ENO1;;chr6:135502501..135502546,+!p1@MYB!0.62!3.94!MYB;;chr1:8938766..8938774,-!p2@ENO1!0.61!254.09!ENO1;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.28!DRAP1;;chr17:41622765..41622821,-!p2@ETV4!0.61!5.07!ETV4;;chr12:54366975..54367001,+!p1@HOXC11!0.61!3.10!HOXC11;;chr12:54379029..54379057,+!p2@HOXC10!0.61!3.10!HOXC10;;chr12:66218469..66218477,+!p16@HMGA2!0.61!3.10!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.61!3.10!HMGA2;;chr1:8938736..8938756,-!p1@ENO1!0.60!3999.23!ENO1;;chr9:35732592..35732640,+!p1@CREB3!0.60!47.89!CREB3;;chr15:67418119..67418162,+!p5@SMAD3!0.60!3.38!SMAD3;;chr19:16435625..16435682,+!p1@KLF2!0.59!113.52!KLF2;;chr4:4861385..4861398,+!p1@MSX1!0.59!9.86!MSX1;;chr8:106330656..106330684,+!p1@ZFPM2!0.59!8.73!ZFPM2;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.23!FOXF2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.94!DRAP1;;chr16:29819403..29819442,+!p5@MAZ!0.58!28.17!MAZ;;chr8:72756667..72756736,-!p2@MSC!0.58!4.79!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.58!2.82!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!0.58!2.82!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!0.58!2.82!HOXA9;;chr16:86600458..86600461,+!p3@FOXC2!0.58!2.82!FOXC2;;chr2:176969179..176969226,+!p2@HOXD11!0.58!2.82!HOXD11;;chr9:16705069..16705086,-!p3@BNC2!0.58!2.82!BNC2;;chr20:30433431..30433442,-!p2@FOXS1!0.58!2.82!FOXS1;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.04!HOXB2;;chr8:72756063..72756125,-!p1@MSC!0.57!6.20!MSC;;chr12:26277929..26277955,-!p3@BHLHE41!0.57!4.23!BHLHE41;;chr21:36260773..36260804,-!p7@RUNX1!0.57!3.94!RUNX1;;chr5:176738887..176738934,-!p1@MXD3!0.56!21.41!MXD3;;chr3:141087393..141087426,+!p3@ZBTB38!0.56!12.68!ZBTB38;;chr11:61520075..61520136,+!p1@C11orf9!0.56!6.48!C11orf9;;chr7:137686763..137686784,-!p5@CREB3L2!0.56!5.07!CREB3L2;;chr3:168864315..168864339,-!p2@MECOM!0.56!4.79!MECOM;;chr6:126070769..126070801,+!p1@HEY2!0.56!3.10!HEY2;;chr20:42295745..42295765,+!p1@MYBL2!0.55!52.68!MYBL2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.55!35.78!TAX1BP3;;chr15:67418177..67418204,+!p9@SMAD3!0.55!2.54!SMAD3;;chr15:67430351..67430366,+!p10@SMAD3!0.55!2.54!SMAD3;;chr19:47523058..47523114,+!p1@NPAS1!0.55!2.54!NPAS1;;chr1:170632477..170632506,+!p6@PRRX1!0.55!2.54!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.55!2.54!EN1;;chr3:25470156..25470227,+!p2@RARB!0.55!2.54!RARB;;chr16:29819446..29819471,+!p9@MAZ!0.54!8.73!MAZ;;chr12:66218183..66218209,+!p4@HMGA2!0.53!5.35!HMGA2;;chr16:1429674..1429703,-!p3@UNKL!0.53!4.51!UNKL;;chr1:8926441..8926473,-!p10@ENO1!0.53!3.94!ENO1;;chr11:65686855..65686946,+!p1@DRAP1!0.52!227.33!DRAP1;;chr8:37553292..37553317,+!p1@ZNF703!0.52!70.99!ZNF703;;chr12:27485785..27485816,+!p1@ARNTL2!0.52!20.28!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.86!FOXP1;;chr19:56152332..56152347,+!p4@ZNF580!0.52!6.20!ZNF580;;chr12:26277817..26277863,-!p2@BHLHE41!0.52!3.38!BHLHE41;;chr20:32274179..32274213,-!p1@E2F1!0.51!18.87!E2F1;;chr2:121493492..121493537,+!p2@GLI2!0.51!4.23!GLI2;;chr17:46687959..46688007,-!p2@HOXB7!0.51!3.38!HOXB7;;chr20:50179368..50179392,-!p2@NFATC2!0.51!3.10!NFATC2;;chr1:170632137..170632172,+!p10@PRRX1!0.51!2.25!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.51!2.25!PRRX1;;chr16:86601088..86601105,+!p5@FOXC2!0.51!2.25!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!0.51!2.25!HOXB6;;chr12:54380112..54380126,+!p5@HOXC10!0.51!2.25!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!0.51!2.25!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.51!2.25!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.51!2.25!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!0.51!2.25!FOXG1;;chr8:55370720..55370733,+!p2@SOX17!0.51!2.25!SOX17;;chr5:321810..321877,+!p1@AHRR!0.50!8.45!AHRR;;chr18:19749517..19749531,+!p3@GATA6!0.50!4.51!GATA6;;chr17:41622834..41622883,-!p6@ETV4!0.50!2.82!ETV4;;chr8:72756637..72756664,-!p3@MSC!0.50!2.54!MSC;;chr19:45908292..45908374,-!p1@PPP1R13L!0.49!24.23!PPP1R13L;;chr20:42295713..42295738,+!p2@MYBL2!0.49!16.06!MYBL2;;chr12:53614115..53614154,-!p1@RARG!0.49!14.65!RARG;;chr15:96874145..96874166,+!p7@NR2F2!0.49!4.79!NR2F2;;chr12:66218378..66218401,+!p6@HMGA2!0.49!3.66!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.49!3.10!DRAP1;;chr1:151032833..151032850,+!p3@MLLT11!0.48!5.63!MLLT11;;chr2:121493425..121493474,+!p1@GLI2!0.48!5.35!GLI2;;chr19:13134772..13134822,+!p2@NFIX!0.48!3.38!NFIX;;chr7:44143997..44144008,+!p3@AEBP1!0.48!2.82!AEBP1;;chr8:106330696..106330719,+!p2@ZFPM2!0.48!2.82!ZFPM2;;chr19:13213511..13213545,-!p2@LYL1!0.48!2.25!LYL1;;chr2:66662281..66662308,+!p1@MEIS1!0.47!8.73!MEIS1;;chr16:1429627..1429662,-!p2@UNKL!0.47!7.32!UNKL;;chr17:41623009..41623053,-!p4@ETV4!0.47!3.66!ETV4;;chr17:59477275..59477286,+!p3@TBX2!0.47!2.82!TBX2;;chr15:80843484..80843499,+!p5@ARNT2!0.47!1.97!ARNT2;;chr16:86612320..86612394,+!p1@FOXL1!0.47!1.97!FOXL1;;chr17:8027418..8027432,-!p1@HES7!0.47!1.97!HES7;;chr18:19749353..19749367,+!p4@GATA6!0.47!1.97!GATA6;;chr11:125034640..125034655,+!p1@PKNOX2!0.47!1.97!PKNOX2;;chr11:46299443..46299459,+!p4@CREB3L1!0.47!1.97!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.47!1.97!TBX3;;chr12:54366894..54366922,+!p2@HOXC11!0.47!1.97!HOXC11;;chr12:54366949..54366973,+!p3@HOXC11!0.47!1.97!HOXC11;;chr19:49865646..49865718,-!p1@TEAD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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002594;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Artery%252c%2520donor3.CNhs12049.11439-118H8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11439-118H8
 |is_a=EFO:0002091;;FF:0000176
 |is_obsolete=
+|library_id=CNhs12049
+|library_id_phase_based=2:CNhs12049
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11439
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.TAGCTT.11439
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11439
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.TAGCTT.11439
 |name=Smooth Muscle Cells - Umbilical Artery, donor3
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12049,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
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 |rna_box=118
@@ Line 61: / Line 82: @@
 |rna_tube_id=118H8
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10014.TAGCTT
 |sample_age=Neonatal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 83: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11439-118H8;search_select_hide=table117:FF:11439-118H8
 }}

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FF:11439-118H8: Difference between revisions

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Latest revision as of 18:01, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0