FF:11451-119A2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005833 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008455;DRR009327;DRZ000752;DRZ002137;DRZ012102;DRZ013487 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000162 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11451-119A2 | |id=FF:11451-119A2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000162 | ||
|is_obsolete= | |||
|library_id=CNhs12053 | |||
|library_id_phase_based=2:CNhs12053 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11451 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11451 | |||
|name=Skeletal Muscle Cells, donor4 | |name=Skeletal Muscle Cells, donor4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12053,LSID838,release011,COMPLETED | |profile_hcage=CNhs12053,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0311120524600587,0,0,0.284270907236698,0,-0.160318030086386,0,-0.1607221047804,0.0773855096605102,0,0,0,0,0,0,0,0,0,0,0,0.0622241049201175,0,0.164393652656613,0,0,0,0,0,0.460609864560542,0,0,0.115076316963955,0,0,0,0,0,0,0,0,0,0,0.116640027413114,0,0.114062116369803,0.0849722280703644,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.0622241049201175,0,0.00268257937875919,0,0.11150125478578,0,0,0.111149988815288,0.0622241049201175,0,0,0,0,0,0,0,0.0622241049201175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00236156197670923,0.20245841760955,0,0,-0.0584468268118252,0.0384179206428627,0,0,0,0,0.0186046761754081,0.0950932692687138,0,0,0,0,0,0,0.0622241049201175,0,0,0,0,0,0,0,0,0,0,-0.0380535802159037,0.0622241049201175,0,0,-0.0812910376033543,-0.357806229706638,0,0,0.0622241049201175,0,0,0 | |||
|repeat_enrich_byname=0,0.164990696339003,0,0,0.0186046761754081,0,0,0,0,0,0.4049168352191,0,0,0,0,0,-0.184954770365447,0,0.168286246681744,0.0649784735049133,0.0311120524600587,0,0.149546461534703,0,0.164990696339003,0,0,0,0,0,0,0,0.189596796052476,0,0.197620355153502,0.0311120524600587,0.0622241049201175,0,0,0.0311120524600587,0.0122444321066336,0,-0.0917627129800085,0.0966464352616346,0,0,0,0,-0.107673847613575,0,-0.0586553788736231,0.0339198590896972,0.0800660112221807,-0.103230789896441,-0.04680465889238,0,0,0,0.111492069728732,-0.182444479509382,0,0,-0.0175330437376814,0.025162182980251,0,0,0.414571909890832,0,0.0145701491585914,0.190293636140734,0,0,0,0,0,0,0,0.0622241049201175,0,0,0,0,0,0.279000411372442,-0.0789556899361518,0,0,0,0,-0.510641738296534,0.0412337943842831,0.0669324505389182,0.90600856330496,0.145828132478054,0.0311120524600587,-0.000208954978083487,0,0.0463801346004615,-0.0800372815775793,-0.344083876055678,0.021319677504926,0.170314813633902,0.127734943455194,0.0323092859958905,0.019820768294466,-0.0246825047348651,-0.053665861032094,-0.00236156197670923,0.0369551148417241,0.08494399479189,-0.169322523687346,0.0622241049201175,0,0.0622241049201175,-0.138288223212378,0,-0.0572044099949789,-0.0596309194739197,-0.0922276372216425,-0.139036862579596,-0.0203840215608669,0.00342170512244322,-0.00304173340267577,0.731791263920855,-0.24894283686821,0.0218587260612781,0.400989893384505,0.0362985251805881,0,-0.087969206950705,-0.0273635119090399,-0.30840999515277,0.0415278623761076,0,-0.421753356890863,-0.0683442610773682,0,0.110908466285405,0.093197259925026,0,0,-0.0795465841939492,0,0,0.162775796079388,0.0178001177970373,0,0.035356748193619,-0.422852115617052,0.0151773451872723,0,-0.0650138668769235,0,0.0735454824003781,0,-0.2672722442312,-0.0590175116762643,-0.0138032451245946,-0.0544745955474273,0,0.0435918891720939,0.119297559792376,-0.0105077505513346,0.0768358412857253,-0.0584468268118252,-0.088099468341979,-0.00895365879545684,-0.0847077921184725,0.165810380110625,0,0.19614407476141,0,-0.121954626139233,-0.0526425675964729,-0.0457229309558714,0.100007406928574,0.208493616028385,-0.0855413420941555,0,-0.0737448312047605,0,0.0596744506611018,0.172158096095394,-0.191256467837869,0.149276081512121,0,0.0287333608128993,-0.102280377009768,0,0,0,0,0.40820067749396,0.15733499589467,-0.122218361697973,-0.0495573905125786,0,0.0155363330528104,0,0,-0.179449888597322,-0.118836010351274,0,-0.135913915707259,-0.260433052603021,-0.226465966538382,-0.115971073434934,0,0,-0.0516478721834489,0,0.248032906742817,-0.397434447789645,0.0320030510408693,-0.214866488739533,0.245904305190707,0,0.233834372051062,0,0,-0.115303661045058,0,0.162181836032638,0,0,-0.0252504948109735,0,0,0.104246808014193,0.0622241049201175,0.00719272705178575,0,0,0,0,0,0,0,0.0238996968626479,0.287539135217304,0,-0.0211819711977672,0,0.0622241049201175,0,0.0622241049201175,0,0,0,0,0.191364568085034,0.082772961933821,0.125015491066397,0,0,0,0,-0.215723402553475,0.114480100910317,0,-0.0152226790845172,0,0,0,0,-0.0239168848690938,0,0,0,0.058320013706557,-0.057730457053664,-0.266203513482262,0,0,0,0.12796243361731,0,0,0,0.0283820626117266,0.00290601691838721,0,0,-0.0552577442194536,0,-0.22443141122724,-0.0193577746267239,0,0.324127277021606,0.00209677273269104,-0.385634114979745,0,0,0.0563695312151534,0,0,0.183087432684228,-0.00603555595572097,0.0622241049201175,0,0,0,0,0,0,0,-0.152090407479638,0.0311120524600587,0,0,0,0,0,0,0,0,0,0,-0.192228823609551,0.0244159707546041,0.0771782386165372,0,0,0,0,0,0,-0.0241060230789031,0.0414239457434729,0.00475591486633965,0,0.058320013706557,0,0,0.0622241049201175,0,0,0.228001053291627,0,0,0,0,0,0.11150125478578,0,0.0622241049201175,0,0.0622241049201175,0.092546914400903,0,0,-0.1607221047804,0,0,0,0,0,0,0.0359530657388542,0.0230634613198803,0,0,0,0,0,-0.00667905862233324,-0.328935053054486,0,0.116640027413114,0,0,0,0,0,-0.0268003914632734,0,0.0622241049201175,0,0,0.170386533527721,0,0,0,0.0118436426239581,0,-0.160318030086386,0.284270907236698,0,0.0622241049201175,0,0,0.116640027413114,0,0,0,0,0,0,0,0,0,0,0,0.0311120524600587,0,0,0,0.357788146105646,0,0.164990696339003,-0.00929424696348816,0,0,0.0372093460240953,0,0,0,0,0,0,-0.000228371568468295,0,0,0,0,0,0,0,0.0311120524600587,0,0,0,0,0,0,0,0,0,0,0.0622241049201175,0,0,0,0,0,0,0.0234619699014689,0,0,0,0,0.477502111954552,0,0,0.460609864560542,0,0,-0.0920328098005262,0,0,0,0,0,0,0.159195247739586,0.28758115623246,-0.0082603721180071,0,0,0.348769861610375,0.00393444122410224,0.0622241049201175,0,0,0,-0.0045532824987838,0,0,0,0,0,0,0,0,0.164990696339003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164393652656613,0,0,0,0,0,0,0,0,0,0,0,0,0.0311120524600587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0311120524600587,0,0,0,0,0,0,-0.00289931081535776,0.116640027413114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0849722280703644,0,0,0,0.104630433347997,0,0,0,0,0,0,0,0,0.116640027413114,0,0,0,0,0,0,0,0,0,0,0,0.0622241049201175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC3505 | |rna_catalog_number=SC3505 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.38126233735608e-274!GO:0043226;organelle;4.32874830081399e-223!GO:0043229;intracellular organelle;8.09631134250858e-223!GO:0043231;intracellular membrane-bound organelle;1.07132025276254e-213!GO:0043227;membrane-bound organelle;2.69824746244969e-213!GO:0005737;cytoplasm;2.66136960898385e-206!GO:0044422;organelle part;4.46379703757487e-174!GO:0044446;intracellular organelle part;1.25389325306111e-172!GO:0044444;cytoplasmic part;1.34299596100204e-150!GO:0032991;macromolecular complex;2.02001794234472e-120!GO:0030529;ribonucleoprotein complex;1.27231347697754e-103!GO:0044237;cellular metabolic process;3.58338665015381e-99!GO:0044238;primary metabolic process;2.03249998991626e-97!GO:0043233;organelle lumen;3.7406861791436e-88!GO:0031974;membrane-enclosed lumen;3.7406861791436e-88!GO:0005634;nucleus;5.72504868569542e-88!GO:0043170;macromolecule metabolic process;2.56422452260795e-87!GO:0005739;mitochondrion;7.96154239842416e-86!GO:0044428;nuclear part;7.3048574067445e-85!GO:0003723;RNA binding;1.07646007096549e-78!GO:0005515;protein binding;1.89334176028055e-76!GO:0005840;ribosome;1.21181961297701e-62!GO:0043234;protein complex;2.40415125746898e-60!GO:0006396;RNA processing;5.69975212994063e-58!GO:0044429;mitochondrial part;9.42885086171656e-58!GO:0006412;translation;2.21310111817929e-55!GO:0003735;structural constituent of ribosome;2.32408416656536e-54!GO:0031090;organelle membrane;5.33811852395533e-54!GO:0016043;cellular component organization and biogenesis;9.95439990099145e-54!GO:0031967;organelle envelope;1.02336072529422e-50!GO:0031981;nuclear lumen;1.86073163389303e-50!GO:0031975;envelope;2.22517802447796e-50!GO:0043283;biopolymer metabolic process;2.37490497012911e-48!GO:0019538;protein metabolic process;3.63204820275605e-48!GO:0043228;non-membrane-bound organelle;9.10697371341585e-48!GO:0043232;intracellular non-membrane-bound organelle;9.10697371341585e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.60986240303476e-47!GO:0009058;biosynthetic process;3.7859375609212e-47!GO:0033279;ribosomal subunit;1.17392364764572e-46!GO:0010467;gene expression;4.32470236725991e-46!GO:0044249;cellular biosynthetic process;1.53301201912817e-44!GO:0044260;cellular macromolecule metabolic process;3.30810309030164e-43!GO:0044267;cellular protein metabolic process;1.7076208100715e-42!GO:0015031;protein transport;2.10887265662933e-42!GO:0033036;macromolecule localization;3.180429981616e-42!GO:0009059;macromolecule biosynthetic process;5.98582611797509e-42!GO:0016071;mRNA metabolic process;6.70845587156925e-42!GO:0005829;cytosol;1.92338108010533e-41!GO:0006996;organelle organization and biogenesis;1.49490367732733e-40!GO:0008380;RNA splicing;6.91808140636146e-40!GO:0045184;establishment of protein localization;7.52717470640958e-39!GO:0008104;protein localization;9.48872257262811e-39!GO:0046907;intracellular transport;1.28234137838629e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.91908490682633e-37!GO:0005740;mitochondrial envelope;8.40887079624791e-37!GO:0006397;mRNA processing;3.9191607209452e-36!GO:0006259;DNA metabolic process;3.76261145005033e-35!GO:0065003;macromolecular complex assembly;8.94398238063701e-35!GO:0031966;mitochondrial membrane;1.45517835740424e-34!GO:0019866;organelle inner membrane;2.27510362363123e-33!GO:0022607;cellular component assembly;2.32700324835358e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.32997579486509e-32!GO:0005743;mitochondrial inner membrane;2.02852224976749e-31!GO:0006886;intracellular protein transport;1.43482777845399e-30!GO:0005654;nucleoplasm;1.24121137408944e-29!GO:0007049;cell cycle;7.11733977613306e-29!GO:0005681;spliceosome;5.51442848403093e-28!GO:0003676;nucleic acid binding;1.71373103290389e-27!GO:0031980;mitochondrial lumen;1.57391842198166e-25!GO:0005759;mitochondrial matrix;1.57391842198166e-25!GO:0044445;cytosolic part;2.03468511802737e-25!GO:0006119;oxidative phosphorylation;6.79206244591633e-25!GO:0000166;nucleotide binding;8.01681084961095e-25!GO:0015934;large ribosomal subunit;9.44107378801423e-25!GO:0044451;nucleoplasm part;7.10631260524771e-24!GO:0044455;mitochondrial membrane part;7.67631011648044e-24!GO:0000278;mitotic cell cycle;9.15725797236905e-24!GO:0051641;cellular localization;1.25023347371493e-23!GO:0051649;establishment of cellular localization;1.43136964141133e-23!GO:0022402;cell cycle process;4.48263853959241e-23!GO:0015935;small ribosomal subunit;4.60552885565663e-23!GO:0005730;nucleolus;3.29573025201614e-22!GO:0006457;protein folding;1.00536973167734e-21!GO:0006974;response to DNA damage stimulus;1.53119787440988e-21!GO:0016462;pyrophosphatase activity;2.79199120015693e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.21773019384327e-21!GO:0012505;endomembrane system;5.05217781699801e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;7.31718209762168e-21!GO:0017111;nucleoside-triphosphatase activity;2.36591140578382e-20!GO:0005746;mitochondrial respiratory chain;5.2572030297444e-20!GO:0016070;RNA metabolic process;1.53001592119401e-19!GO:0051186;cofactor metabolic process;1.79479490863444e-19!GO:0022618;protein-RNA complex assembly;2.66463248713387e-19!GO:0005694;chromosome;3.11048490688869e-19!GO:0005783;endoplasmic reticulum;3.82256664223526e-19!GO:0005761;mitochondrial ribosome;4.11784069391863e-19!GO:0000313;organellar ribosome;4.11784069391863e-19!GO:0000087;M phase of mitotic cell cycle;6.42369552260695e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.14094198882676e-18!GO:0007067;mitosis;1.21260476506228e-18!GO:0042254;ribosome biogenesis and assembly;2.40962278685823e-18!GO:0022403;cell cycle phase;3.99611207836276e-18!GO:0050136;NADH dehydrogenase (quinone) activity;1.10190069134876e-17!GO:0003954;NADH dehydrogenase activity;1.10190069134876e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.10190069134876e-17!GO:0006281;DNA repair;1.40578432231972e-17!GO:0000502;proteasome complex (sensu Eukaryota);3.55172519468596e-17!GO:0044427;chromosomal part;3.66796534837068e-17!GO:0044432;endoplasmic reticulum part;4.89987290395925e-17!GO:0048770;pigment granule;5.28070159873053e-17!GO:0042470;melanosome;5.28070159873053e-17!GO:0016874;ligase activity;9.81412310999546e-17!GO:0017076;purine nucleotide binding;1.50464342133388e-16!GO:0006605;protein targeting;1.59792538489036e-16!GO:0044265;cellular macromolecule catabolic process;1.60634115268875e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.80620535814366e-16!GO:0006260;DNA replication;3.17138038279652e-16!GO:0032553;ribonucleotide binding;4.0007855675242e-16!GO:0032555;purine ribonucleotide binding;4.0007855675242e-16!GO:0008135;translation factor activity, nucleic acid binding;4.22964400666414e-16!GO:0042775;organelle ATP synthesis coupled electron transport;4.41537661109127e-16!GO:0042773;ATP synthesis coupled electron transport;4.41537661109127e-16!GO:0043285;biopolymer catabolic process;5.83010595234124e-16!GO:0030964;NADH dehydrogenase complex (quinone);7.61901315245812e-16!GO:0045271;respiratory chain complex I;7.61901315245812e-16!GO:0005747;mitochondrial respiratory chain complex I;7.61901315245812e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.6951156384184e-15!GO:0044248;cellular catabolic process;2.03577091559633e-15!GO:0009719;response to endogenous stimulus;2.09782445483789e-15!GO:0051301;cell division;2.1801580351344e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.40882495409346e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.57495639780565e-15!GO:0006512;ubiquitin cycle;2.61569872198741e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.22129858175017e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.36393214734483e-15!GO:0000375;RNA splicing, via transesterification reactions;3.36393214734483e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.36393214734483e-15!GO:0006732;coenzyme metabolic process;4.19730008716809e-15!GO:0000279;M phase;4.19730008716809e-15!GO:0019941;modification-dependent protein catabolic process;4.3829129052585e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.3829129052585e-15!GO:0006511;ubiquitin-dependent protein catabolic process;4.87037836679894e-15!GO:0009057;macromolecule catabolic process;4.98749238233412e-15!GO:0044257;cellular protein catabolic process;7.57120108492509e-15!GO:0008134;transcription factor binding;8.30286082190653e-15!GO:0005635;nuclear envelope;9.58966621313862e-15!GO:0005524;ATP binding;1.2659327766627e-14!GO:0051276;chromosome organization and biogenesis;1.29808258433632e-14!GO:0030554;adenyl nucleotide binding;1.56714178632686e-14!GO:0051082;unfolded protein binding;2.0732204503693e-14!GO:0032559;adenyl ribonucleotide binding;2.90462800764444e-14!GO:0048193;Golgi vesicle transport;6.89356404997255e-14!GO:0030163;protein catabolic process;1.32537824041468e-13!GO:0031965;nuclear membrane;1.53013300344229e-13!GO:0006399;tRNA metabolic process;1.88832621000547e-13!GO:0009055;electron carrier activity;2.64637969572272e-13!GO:0044453;nuclear membrane part;5.32653022754849e-13!GO:0016604;nuclear body;9.51925106674527e-13!GO:0005794;Golgi apparatus;9.89151114704215e-13!GO:0003743;translation initiation factor activity;1.03204739082533e-12!GO:0006364;rRNA processing;1.76617300840492e-12!GO:0000074;regulation of progression through cell cycle;2.74444689973105e-12!GO:0006413;translational initiation;3.04666893585718e-12!GO:0051726;regulation of cell cycle;4.57400311544861e-12!GO:0006913;nucleocytoplasmic transport;5.94681768124122e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.21388363305285e-12!GO:0005793;ER-Golgi intermediate compartment;7.38281099785643e-12!GO:0016072;rRNA metabolic process;7.38281099785643e-12!GO:0042623;ATPase activity, coupled;7.74600144763738e-12!GO:0016887;ATPase activity;1.00146548709368e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.10301681320083e-11!GO:0009259;ribonucleotide metabolic process;1.33353824643382e-11!GO:0051169;nuclear transport;1.60942367846386e-11!GO:0005789;endoplasmic reticulum membrane;1.71048522294838e-11!GO:0006163;purine nucleotide metabolic process;2.51704130397332e-11!GO:0006446;regulation of translational initiation;3.7263064259193e-11!GO:0006323;DNA packaging;3.7263064259193e-11!GO:0043412;biopolymer modification;5.98421803980608e-11!GO:0005643;nuclear pore;8.11762437213005e-11!GO:0004386;helicase activity;1.31292078416301e-10!GO:0065004;protein-DNA complex assembly;1.31600288439755e-10!GO:0009150;purine ribonucleotide metabolic process;1.70011756289669e-10!GO:0006164;purine nucleotide biosynthetic process;2.8596746726467e-10!GO:0065002;intracellular protein transport across a membrane;3.27882230732551e-10!GO:0016192;vesicle-mediated transport;3.67627012775799e-10!GO:0009260;ribonucleotide biosynthetic process;4.24641603167741e-10!GO:0008565;protein transporter activity;5.34149867920668e-10!GO:0009060;aerobic respiration;6.42721462407638e-10!GO:0017038;protein import;7.80881099430026e-10!GO:0016607;nuclear speck;8.23673458461391e-10!GO:0030532;small nuclear ribonucleoprotein complex;9.09112237138113e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.38282625867744e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.47655931915668e-10!GO:0004812;aminoacyl-tRNA ligase activity;9.47655931915668e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.47655931915668e-10!GO:0006333;chromatin assembly or disassembly;9.96713143003024e-10!GO:0051188;cofactor biosynthetic process;1.15661304362543e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.16916400300806e-09!GO:0000785;chromatin;1.34583048517964e-09!GO:0045333;cellular respiration;1.34583048517964e-09!GO:0016491;oxidoreductase activity;1.35656835622033e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.83794177236359e-09!GO:0043038;amino acid activation;1.86086060266925e-09!GO:0006418;tRNA aminoacylation for protein translation;1.86086060266925e-09!GO:0043039;tRNA aminoacylation;1.86086060266925e-09!GO:0006461;protein complex assembly;2.09843487960826e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.2244111104097e-09!GO:0009141;nucleoside triphosphate metabolic process;2.2244111104097e-09!GO:0003712;transcription cofactor activity;2.34688732088692e-09!GO:0008026;ATP-dependent helicase activity;2.41226910848818e-09!GO:0006464;protein modification process;2.91682929423804e-09!GO:0046930;pore complex;3.66636030099385e-09!GO:0003697;single-stranded DNA binding;3.78801310230022e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.0182221193059e-09!GO:0012501;programmed cell death;4.42443644151166e-09!GO:0006403;RNA localization;4.4260709337256e-09!GO:0043566;structure-specific DNA binding;4.5490291632575e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.68684993564242e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.68684993564242e-09!GO:0050657;nucleic acid transport;4.75345605273356e-09!GO:0051236;establishment of RNA localization;4.75345605273356e-09!GO:0050658;RNA transport;4.75345605273356e-09!GO:0009056;catabolic process;5.04845272697383e-09!GO:0006915;apoptosis;6.68175363502555e-09!GO:0015630;microtubule cytoskeleton;7.04903879022836e-09!GO:0006334;nucleosome assembly;1.10522426843253e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.69690678805941e-08!GO:0005788;endoplasmic reticulum lumen;1.72465201282921e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.90001110423951e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.90001110423951e-08!GO:0016853;isomerase activity;1.9052010267681e-08!GO:0006366;transcription from RNA polymerase II promoter;2.19574544785558e-08!GO:0006099;tricarboxylic acid cycle;2.25163841741628e-08!GO:0046356;acetyl-CoA catabolic process;2.25163841741628e-08!GO:0015986;ATP synthesis coupled proton transport;2.8016581526308e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.8016581526308e-08!GO:0009117;nucleotide metabolic process;2.92402587777841e-08!GO:0031497;chromatin assembly;3.98958285113999e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.05153328140633e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.05153328140633e-08!GO:0008219;cell death;4.21204955509276e-08!GO:0016265;death;4.21204955509276e-08!GO:0051187;cofactor catabolic process;4.31478774172004e-08!GO:0007005;mitochondrion organization and biogenesis;4.52209236126261e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.98678941095404e-08!GO:0043687;post-translational protein modification;5.10862880670779e-08!GO:0006261;DNA-dependent DNA replication;5.1320564905537e-08!GO:0006091;generation of precursor metabolites and energy;5.56415982759443e-08!GO:0006084;acetyl-CoA metabolic process;5.66165613100576e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.9307746563379e-08!GO:0046034;ATP metabolic process;6.79131928229849e-08!GO:0016779;nucleotidyltransferase activity;7.30059409860906e-08!GO:0009109;coenzyme catabolic process;7.69875505509009e-08!GO:0019829;cation-transporting ATPase activity;1.0445787101287e-07!GO:0009108;coenzyme biosynthetic process;1.22621439083521e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.27547453583254e-07!GO:0030120;vesicle coat;1.41675294535942e-07!GO:0030662;coated vesicle membrane;1.41675294535942e-07!GO:0016740;transferase activity;1.46247235709925e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.68548189332783e-07!GO:0008639;small protein conjugating enzyme activity;1.71011518023973e-07!GO:0051028;mRNA transport;1.89382003629163e-07!GO:0048523;negative regulation of cellular process;1.99964535234645e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.11895903947137e-07!GO:0005762;mitochondrial large ribosomal subunit;2.51866786797013e-07!GO:0000315;organellar large ribosomal subunit;2.51866786797013e-07!GO:0004842;ubiquitin-protein ligase activity;3.29194276573304e-07!GO:0000775;chromosome, pericentric region;3.80499866885186e-07!GO:0005667;transcription factor complex;3.85798743157478e-07!GO:0005813;centrosome;4.20721551918048e-07!GO:0045259;proton-transporting ATP synthase complex;4.39686499500231e-07!GO:0005819;spindle;4.72945744192288e-07!GO:0006754;ATP biosynthetic process;5.32841586838538e-07!GO:0006753;nucleoside phosphate metabolic process;5.32841586838538e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.40013114794092e-07!GO:0051170;nuclear import;6.18360178132315e-07!GO:0019787;small conjugating protein ligase activity;7.47135751846985e-07!GO:0048475;coated membrane;7.5561798167199e-07!GO:0030117;membrane coat;7.5561798167199e-07!GO:0000245;spliceosome assembly;7.60237774710156e-07!GO:0050794;regulation of cellular process;9.26255670242223e-07!GO:0051246;regulation of protein metabolic process;1.14028189096868e-06!GO:0006752;group transfer coenzyme metabolic process;1.15538073165536e-06!GO:0051329;interphase of mitotic cell cycle;1.19975625385302e-06!GO:0005815;microtubule organizing center;1.37272064919324e-06!GO:0003924;GTPase activity;1.6068060911688e-06!GO:0006606;protein import into nucleus;1.67067950315085e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.8328721195897e-06!GO:0007010;cytoskeleton organization and biogenesis;2.05559962495304e-06!GO:0003899;DNA-directed RNA polymerase activity;2.09571814637837e-06!GO:0016859;cis-trans isomerase activity;2.10539192529252e-06!GO:0051325;interphase;2.31472545524217e-06!GO:0043623;cellular protein complex assembly;2.46692684382035e-06!GO:0004298;threonine endopeptidase activity;2.53288930284063e-06!GO:0016881;acid-amino acid ligase activity;3.18032844687259e-06!GO:0000314;organellar small ribosomal subunit;3.28784589038451e-06!GO:0005763;mitochondrial small ribosomal subunit;3.28784589038451e-06!GO:0007051;spindle organization and biogenesis;3.93919898590965e-06!GO:0005768;endosome;4.1633211844297e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.71798291022144e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.90843647233477e-06!GO:0016568;chromatin modification;5.72756634630749e-06!GO:0008094;DNA-dependent ATPase activity;5.85705355917474e-06!GO:0048519;negative regulation of biological process;5.9905243559872e-06!GO:0006613;cotranslational protein targeting to membrane;6.16004048074004e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.55550993440549e-06!GO:0005657;replication fork;7.0291829404184e-06!GO:0045454;cell redox homeostasis;9.06538726772924e-06!GO:0003724;RNA helicase activity;9.11153692994662e-06!GO:0044431;Golgi apparatus part;9.14531879513835e-06!GO:0008654;phospholipid biosynthetic process;1.19184007835419e-05!GO:0000075;cell cycle checkpoint;1.226170879249e-05!GO:0016787;hydrolase activity;1.36442805927873e-05!GO:0043069;negative regulation of programmed cell death;1.36671778750134e-05!GO:0043066;negative regulation of apoptosis;1.54442552942842e-05!GO:0042981;regulation of apoptosis;1.7656280410644e-05!GO:0043021;ribonucleoprotein binding;1.79628047690044e-05!GO:0031324;negative regulation of cellular metabolic process;1.90516407073064e-05!GO:0045786;negative regulation of progression through cell cycle;2.11647763022254e-05!GO:0044440;endosomal part;2.41790117854992e-05!GO:0010008;endosome membrane;2.41790117854992e-05!GO:0043067;regulation of programmed cell death;2.43340177096808e-05!GO:0008033;tRNA processing;2.44364636954039e-05!GO:0032446;protein modification by small protein conjugation;2.5822355052785e-05!GO:0031968;organelle outer membrane;2.73841031261722e-05!GO:0019867;outer membrane;3.08752185050671e-05!GO:0006793;phosphorus metabolic process;3.08752185050671e-05!GO:0006796;phosphate metabolic process;3.08752185050671e-05!GO:0016126;sterol biosynthetic process;3.1925618034054e-05!GO:0006916;anti-apoptosis;3.2909001606612e-05!GO:0005048;signal sequence binding;3.38046586765325e-05!GO:0030867;rough endoplasmic reticulum membrane;3.83940124486019e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.84443559485767e-05!GO:0044452;nucleolar part;3.84911452567602e-05!GO:0005798;Golgi-associated vesicle;3.85510210921944e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.88713718906325e-05!GO:0031252;leading edge;3.93426607304817e-05!GO:0016567;protein ubiquitination;3.98818579637002e-05!GO:0008168;methyltransferase activity;4.00059562102204e-05!GO:0016564;transcription repressor activity;4.00905706048872e-05!GO:0000151;ubiquitin ligase complex;4.09225928789007e-05!GO:0005770;late endosome;4.14696416896876e-05!GO:0050789;regulation of biological process;4.24836450277572e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.72197397744753e-05!GO:0003713;transcription coactivator activity;6.06374330409517e-05!GO:0008092;cytoskeletal protein binding;6.16685446903173e-05!GO:0051427;hormone receptor binding;6.27078923200778e-05!GO:0016310;phosphorylation;7.22856036100164e-05!GO:0006626;protein targeting to mitochondrion;7.27319712679094e-05!GO:0030029;actin filament-based process;8.23296270100875e-05!GO:0005741;mitochondrial outer membrane;9.10133329604186e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.21427053640321e-05!GO:0009892;negative regulation of metabolic process;9.51936700508467e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;9.94426408529205e-05!GO:0003714;transcription corepressor activity;0.000105225269065305!GO:0000786;nucleosome;0.000106542810328386!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000109891645004575!GO:0043681;protein import into mitochondrion;0.00011404237994761!GO:0000139;Golgi membrane;0.000119609140070647!GO:0009165;nucleotide biosynthetic process;0.000123156832918917!GO:0051052;regulation of DNA metabolic process;0.000125444043522461!GO:0035257;nuclear hormone receptor binding;0.000135765120179125!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00015334879132343!GO:0019899;enzyme binding;0.000156514396911492!GO:0016363;nuclear matrix;0.000161574309746036!GO:0003690;double-stranded DNA binding;0.000209829824918573!GO:0006414;translational elongation;0.000209829824918573!GO:0016023;cytoplasmic membrane-bound vesicle;0.000229459582975987!GO:0016563;transcription activator activity;0.000229459582975987!GO:0006302;double-strand break repair;0.000231827337407763!GO:0016481;negative regulation of transcription;0.00023465735853369!GO:0006612;protein targeting to membrane;0.000237282296064859!GO:0031988;membrane-bound vesicle;0.000244314931197591!GO:0033116;ER-Golgi intermediate compartment membrane;0.000250953736379437!GO:0019843;rRNA binding;0.000255984309573042!GO:0008610;lipid biosynthetic process;0.00027753508850945!GO:0006383;transcription from RNA polymerase III promoter;0.000293844124205285!GO:0003729;mRNA binding;0.00030035295273488!GO:0005525;GTP binding;0.000301042325730777!GO:0004576;oligosaccharyl transferase activity;0.000303966580026866!GO:0030880;RNA polymerase complex;0.00031453313583204!GO:0046474;glycerophospholipid biosynthetic process;0.000320247596134362!GO:0005791;rough endoplasmic reticulum;0.000323140498121806!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000330134546308145!GO:0008250;oligosaccharyl transferase complex;0.000332243555639528!GO:0006695;cholesterol biosynthetic process;0.000339341798352576!GO:0008186;RNA-dependent ATPase activity;0.000341277904025172!GO:0030133;transport vesicle;0.000345847127634685!GO:0051168;nuclear export;0.000345847127634685!GO:0050662;coenzyme binding;0.000347037271218455!GO:0000059;protein import into nucleus, docking;0.000348965579555493!GO:0007088;regulation of mitosis;0.000353800477902689!GO:0000776;kinetochore;0.000380400138320926!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000395027931449978!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000479745284316135!GO:0051789;response to protein stimulus;0.000495207242681943!GO:0006986;response to unfolded protein;0.000495207242681943!GO:0003678;DNA helicase activity;0.0005069002064673!GO:0005885;Arp2/3 protein complex;0.0005069002064673!GO:0005769;early endosome;0.0005069002064673!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000532452228417587!GO:0046483;heterocycle metabolic process;0.000558389602493028!GO:0006839;mitochondrial transport;0.000579129628082276!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000615882782992574!GO:0003684;damaged DNA binding;0.000618653853236639!GO:0006310;DNA recombination;0.000681332189339422!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000681356849352831!GO:0031982;vesicle;0.000730109000825673!GO:0019222;regulation of metabolic process;0.000761795300499043!GO:0051920;peroxiredoxin activity;0.000761795300499043!GO:0031410;cytoplasmic vesicle;0.000774744115735647!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000780344624059362!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000780344624059362!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000780344624059362!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000784537270399459!GO:0000428;DNA-directed RNA polymerase complex;0.000784537270399459!GO:0004527;exonuclease activity;0.000796490826117077!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000812206780444918!GO:0030663;COPI coated vesicle membrane;0.000823620789394134!GO:0030126;COPI vesicle coat;0.000823620789394134!GO:0007006;mitochondrial membrane organization and biogenesis;0.000842866728117696!GO:0019752;carboxylic acid metabolic process;0.000858354189991315!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000860541999810526!GO:0006082;organic acid metabolic process;0.000883771731635042!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000886837922738735!GO:0005684;U2-dependent spliceosome;0.000913806077782399!GO:0004004;ATP-dependent RNA helicase activity;0.000945669647034311!GO:0051287;NAD binding;0.000945669647034311!GO:0008361;regulation of cell size;0.000982348312306585!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000982348312306585!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00100479954265366!GO:0051540;metal cluster binding;0.00100534550122405!GO:0051536;iron-sulfur cluster binding;0.00100534550122405!GO:0031072;heat shock protein binding;0.00101578983998753!GO:0018196;peptidyl-asparagine modification;0.00102090155472026!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102090155472026!GO:0007052;mitotic spindle organization and biogenesis;0.00106051925360602!GO:0016049;cell growth;0.00107683334790936!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00118409936565139!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00118409936565139!GO:0006275;regulation of DNA replication;0.00124840144302804!GO:0051252;regulation of RNA metabolic process;0.00125595424017987!GO:0048500;signal recognition particle;0.00129067114635625!GO:0007093;mitotic cell cycle checkpoint;0.00129119231831613!GO:0005905;coated pit;0.00133886261134699!GO:0044262;cellular carbohydrate metabolic process;0.00142799595614735!GO:0051539;4 iron, 4 sulfur cluster binding;0.00144439365524201!GO:0032561;guanyl ribonucleotide binding;0.00152599835211074!GO:0019001;guanyl nucleotide binding;0.00152599835211074!GO:0043284;biopolymer biosynthetic process;0.00154485370116031!GO:0001558;regulation of cell growth;0.00172776302225991!GO:0000049;tRNA binding;0.0017780198071574!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0018078365259887!GO:0015002;heme-copper terminal oxidase activity;0.0018078365259887!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0018078365259887!GO:0004129;cytochrome-c oxidase activity;0.0018078365259887!GO:0006118;electron transport;0.00191700044795085!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00192382714626128!GO:0015631;tubulin binding;0.00193245362738265!GO:0046489;phosphoinositide biosynthetic process;0.00207588578915783!GO:0006402;mRNA catabolic process;0.00208681256873485!GO:0030137;COPI-coated vesicle;0.0021727865039466!GO:0042802;identical protein binding;0.0021727865039466!GO:0007059;chromosome segregation;0.00219238323751183!GO:0008312;7S RNA binding;0.00229676714490052!GO:0006950;response to stress;0.00236199395327775!GO:0008139;nuclear localization sequence binding;0.00239978900124046!GO:0048037;cofactor binding;0.00267949259957128!GO:0009112;nucleobase metabolic process;0.00280403721661551!GO:0003682;chromatin binding;0.0028467917013029!GO:0005773;vacuole;0.0028980395158066!GO:0008180;signalosome;0.00293960858104542!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0030612518045027!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00312091155250039!GO:0006891;intra-Golgi vesicle-mediated transport;0.00312728033957756!GO:0009116;nucleoside metabolic process;0.0031631415147538!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0031631415147538!GO:0006740;NADPH regeneration;0.0031631415147538!GO:0006098;pentose-phosphate shunt;0.0031631415147538!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00321569790522278!GO:0045047;protein targeting to ER;0.00321569790522278!GO:0043488;regulation of mRNA stability;0.00333864444745545!GO:0043487;regulation of RNA stability;0.00333864444745545!GO:0046467;membrane lipid biosynthetic process;0.00333864444745545!GO:0035258;steroid hormone receptor binding;0.00352427553548224!GO:0030658;transport vesicle membrane;0.00362749467779306!GO:0051087;chaperone binding;0.00362749467779306!GO:0005874;microtubule;0.0036570907353499!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00368944667159617!GO:0030132;clathrin coat of coated pit;0.0038004294717437!GO:0006595;polyamine metabolic process;0.0038023515993879!GO:0032508;DNA duplex unwinding;0.00408022352426465!GO:0032392;DNA geometric change;0.00408022352426465!GO:0031124;mRNA 3'-end processing;0.0043907170219752!GO:0016272;prefoldin complex;0.00443008997647565!GO:0006352;transcription initiation;0.00446514506664699!GO:0006979;response to oxidative stress;0.00457888815596064!GO:0000082;G1/S transition of mitotic cell cycle;0.00484450711557937!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00487299335469982!GO:0016044;membrane organization and biogenesis;0.00515089606309981!GO:0030176;integral to endoplasmic reticulum membrane;0.00536047339865526!GO:0004518;nuclease activity;0.00558443248478607!GO:0030134;ER to Golgi transport vesicle;0.00563587030227854!GO:0005758;mitochondrial intermembrane space;0.00577401924296578!GO:0030521;androgen receptor signaling pathway;0.0058540839168448!GO:0006401;RNA catabolic process;0.00597291678507591!GO:0048144;fibroblast proliferation;0.00610815885130182!GO:0048145;regulation of fibroblast proliferation;0.00610815885130182!GO:0031970;organelle envelope lumen;0.00630888426066435!GO:0006268;DNA unwinding during replication;0.00636094930434291!GO:0005637;nuclear inner membrane;0.00640256281714731!GO:0048471;perinuclear region of cytoplasm;0.00653996323535407!GO:0051128;regulation of cellular component organization and biogenesis;0.00659252804968293!GO:0006144;purine base metabolic process;0.00659768954622261!GO:0006778;porphyrin metabolic process;0.00659768954622261!GO:0033013;tetrapyrrole metabolic process;0.00659768954622261!GO:0048146;positive regulation of fibroblast proliferation;0.00681234409688097!GO:0030127;COPII vesicle coat;0.00688833269498972!GO:0012507;ER to Golgi transport vesicle membrane;0.00688833269498972!GO:0016251;general RNA polymerase II transcription factor activity;0.00690111828742065!GO:0016408;C-acyltransferase activity;0.00734031491384055!GO:0030118;clathrin coat;0.00743987835238492!GO:0043022;ribosome binding;0.00743987835238492!GO:0000339;RNA cap binding;0.00766236500901683!GO:0051101;regulation of DNA binding;0.00770769662598293!GO:0016860;intramolecular oxidoreductase activity;0.00789115727487709!GO:0001726;ruffle;0.0079556542507814!GO:0007050;cell cycle arrest;0.00796036563025062!GO:0004003;ATP-dependent DNA helicase activity;0.00831961305517725!GO:0003746;translation elongation factor activity;0.00840528399848709!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00852143449137154!GO:0007346;regulation of progression through mitotic cell cycle;0.00853502846475128!GO:0017166;vinculin binding;0.00866887801704345!GO:0005876;spindle microtubule;0.00876897030076981!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00878349783209332!GO:0022890;inorganic cation transmembrane transporter activity;0.00885060869258626!GO:0000323;lytic vacuole;0.00885060869258626!GO:0005764;lysosome;0.00885060869258626!GO:0006520;amino acid metabolic process;0.00897566799592316!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00912554861510012!GO:0005869;dynactin complex;0.00919523510194271!GO:0003711;transcription elongation regulator activity;0.00928719022610986!GO:0005832;chaperonin-containing T-complex;0.00929570888555951!GO:0015992;proton transport;0.00939488865819016!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00977281060553257!GO:0006733;oxidoreduction coenzyme metabolic process;0.00984794596563742!GO:0031902;late endosome membrane;0.0099158394881594!GO:0006611;protein export from nucleus;0.00993145973309449!GO:0006818;hydrogen transport;0.00996465189215341!GO:0004177;aminopeptidase activity;0.010348007541884!GO:0030660;Golgi-associated vesicle membrane;0.010348007541884!GO:0016197;endosome transport;0.0104042681573553!GO:0065009;regulation of a molecular function;0.010660218633015!GO:0006220;pyrimidine nucleotide metabolic process;0.0106820353381225!GO:0009303;rRNA transcription;0.0107940896466165!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0108396780324227!GO:0015399;primary active transmembrane transporter activity;0.0108396780324227!GO:0048522;positive regulation of cellular process;0.0109040710194877!GO:0009451;RNA modification;0.0109133976199308!GO:0006007;glucose catabolic process;0.0109133976199308!GO:0000178;exosome (RNase complex);0.0109418821287568!GO:0003756;protein disulfide isomerase activity;0.0112290635719419!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0112290635719419!GO:0031625;ubiquitin protein ligase binding;0.0113528387492775!GO:0030027;lamellipodium;0.0114316763873886!GO:0007017;microtubule-based process;0.0114514257094012!GO:0006405;RNA export from nucleus;0.0114918886703574!GO:0033673;negative regulation of kinase activity;0.0116547124966785!GO:0006469;negative regulation of protein kinase activity;0.0116547124966785!GO:0030041;actin filament polymerization;0.0117071217311072!GO:0000922;spindle pole;0.0118860919288916!GO:0042770;DNA damage response, signal transduction;0.012127304247359!GO:0000228;nuclear chromosome;0.0124170305156434!GO:0006739;NADP metabolic process;0.0126401388768809!GO:0000910;cytokinesis;0.0127442812960636!GO:0004674;protein serine/threonine kinase activity;0.0128161602587295!GO:0043596;nuclear replication fork;0.0135136541170977!GO:0015036;disulfide oxidoreductase activity;0.013590055032979!GO:0016407;acetyltransferase activity;0.0144478335010842!GO:0048487;beta-tubulin binding;0.0146632209089497!GO:0006289;nucleotide-excision repair;0.0146731551071836!GO:0051348;negative regulation of transferase activity;0.0146731551071836!GO:0007243;protein kinase cascade;0.0147429574108076!GO:0050681;androgen receptor binding;0.0153141439708156!GO:0032984;macromolecular complex disassembly;0.0156966897347633!GO:0006650;glycerophospholipid metabolic process;0.0156966897347633!GO:0042158;lipoprotein biosynthetic process;0.0159179483823673!GO:0031570;DNA integrity checkpoint;0.0161538335107786!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0162418035806119!GO:0008629;induction of apoptosis by intracellular signals;0.0162999639940305!GO:0006779;porphyrin biosynthetic process;0.0162999639940305!GO:0033014;tetrapyrrole biosynthetic process;0.0162999639940305!GO:0065007;biological regulation;0.0163239762030748!GO:0003779;actin binding;0.0163823268421282!GO:0031123;RNA 3'-end processing;0.016600791769092!GO:0005862;muscle thin filament tropomyosin;0.017081047842068!GO:0051098;regulation of binding;0.0171120198245957!GO:0000792;heterochromatin;0.0172046418397541!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0174877077365194!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0175333754415511!GO:0000287;magnesium ion binding;0.0176595632045866!GO:0009124;nucleoside monophosphate biosynthetic process;0.0183754565282581!GO:0009123;nucleoside monophosphate metabolic process;0.0183754565282581!GO:0005669;transcription factor TFIID complex;0.0184668179751785!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0185465644939567!GO:0006497;protein amino acid lipidation;0.0191701214612132!GO:0006378;mRNA polyadenylation;0.0194054839843459!GO:0006506;GPI anchor biosynthetic process;0.0196946202896449!GO:0046112;nucleobase biosynthetic process;0.0201426124216309!GO:0030119;AP-type membrane coat adaptor complex;0.0202042499139328!GO:0008408;3'-5' exonuclease activity;0.0202828582399636!GO:0008022;protein C-terminus binding;0.020689839581559!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0207107597276848!GO:0042168;heme metabolic process;0.0208674415806385!GO:0007021;tubulin folding;0.0211686250836523!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0212684430965667!GO:0015629;actin cytoskeleton;0.0215682906566024!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0217978485668417!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0220738622595163!GO:0016584;nucleosome positioning;0.0221770502154176!GO:0030508;thiol-disulfide exchange intermediate activity;0.0221770502154176!GO:0040029;regulation of gene expression, epigenetic;0.0222219542022396!GO:0004532;exoribonuclease activity;0.0222985896714347!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0222985896714347!GO:0001725;stress fiber;0.0224886565131045!GO:0032432;actin filament bundle;0.0224886565131045!GO:0006541;glutamine metabolic process;0.0226501117571087!GO:0032259;methylation;0.0226501117571087!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0227680610529775!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0227680610529775!GO:0006505;GPI anchor metabolic process;0.0228088970508182!GO:0006509;membrane protein ectodomain proteolysis;0.0229455106364889!GO:0033619;membrane protein proteolysis;0.0229455106364889!GO:0030384;phosphoinositide metabolic process;0.0231788577472862!GO:0031529;ruffle organization and biogenesis;0.0231788577472862!GO:0008299;isoprenoid biosynthetic process;0.0232967244196453!GO:0031901;early endosome membrane;0.0237083491304741!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.024068963343359!GO:0005856;cytoskeleton;0.0244274262522819!GO:0008154;actin polymerization and/or depolymerization;0.0245066068306528!GO:0000096;sulfur amino acid metabolic process;0.0245122046620427!GO:0030518;steroid hormone receptor signaling pathway;0.0245573548180233!GO:0030125;clathrin vesicle coat;0.024669768617431!GO:0030665;clathrin coated vesicle membrane;0.024669768617431!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0250052972619973!GO:0006284;base-excision repair;0.0255683904582054!GO:0006376;mRNA splice site selection;0.0255683904582054!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0255683904582054!GO:0031323;regulation of cellular metabolic process;0.0256876753919563!GO:0016125;sterol metabolic process;0.0256876753919563!GO:0043241;protein complex disassembly;0.0260458798169959!GO:0043414;biopolymer methylation;0.0260578376676258!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0263308461147935!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.02640339380739!GO:0000084;S phase of mitotic cell cycle;0.02640339380739!GO:0008632;apoptotic program;0.0264497577261226!GO:0046128;purine ribonucleoside metabolic process;0.0271549816699465!GO:0042278;purine nucleoside metabolic process;0.0271549816699465!GO:0043624;cellular protein complex disassembly;0.0275566776575441!GO:0030145;manganese ion binding;0.0276046860524397!GO:0007034;vacuolar transport;0.027776727905534!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0279525138397912!GO:0004448;isocitrate dehydrogenase activity;0.0279650011571918!GO:0006769;nicotinamide metabolic process;0.0282679701208307!GO:0031371;ubiquitin conjugating enzyme complex;0.0282985201777832!GO:0000209;protein polyubiquitination;0.028342281721938!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0284909255098935!GO:0010257;NADH dehydrogenase complex assembly;0.0284909255098935!GO:0033108;mitochondrial respiratory chain complex assembly;0.0284909255098935!GO:0006892;post-Golgi vesicle-mediated transport;0.0285239450527371!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0285239450527371!GO:0045039;protein import into mitochondrial inner membrane;0.0285239450527371!GO:0045892;negative regulation of transcription, DNA-dependent;0.0285239450527371!GO:0007040;lysosome organization and biogenesis;0.028850161761933!GO:0035267;NuA4 histone acetyltransferase complex;0.0292100211829102!GO:0009081;branched chain family amino acid metabolic process;0.0292100211829102!GO:0040008;regulation of growth;0.02959119180399!GO:0043601;nuclear replisome;0.0296286842747149!GO:0030894;replisome;0.0296286842747149!GO:0032200;telomere organization and biogenesis;0.0299681942683512!GO:0000723;telomere maintenance;0.0299681942683512!GO:0043189;H4/H2A histone acetyltransferase complex;0.03018935409917!GO:0006350;transcription;0.0308839542580938!GO:0035035;histone acetyltransferase binding;0.0311176226045515!GO:0030032;lamellipodium biogenesis;0.0312766900444608!GO:0051320;S phase;0.0323511170019262!GO:0030911;TPR domain binding;0.032767181070478!GO:0030131;clathrin adaptor complex;0.0328361997747313!GO:0009161;ribonucleoside monophosphate metabolic process;0.0329867536381016!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0329867536381016!GO:0050178;phenylpyruvate tautomerase activity;0.0332478357446158!GO:0008538;proteasome activator activity;0.0332478357446158!GO:0000152;nuclear ubiquitin ligase complex;0.0337503721496239!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0337845771687203!GO:0045045;secretory pathway;0.0339213213705691!GO:0005100;Rho GTPase activator activity;0.0344930618328395!GO:0042393;histone binding;0.0347114390831171!GO:0008320;protein transmembrane transporter activity;0.0350690586874995!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0353751981881662!GO:0005784;translocon complex;0.035398544410184!GO:0000725;recombinational repair;0.0356535491531255!GO:0000724;double-strand break repair via homologous recombination;0.0356535491531255!GO:0006720;isoprenoid metabolic process;0.035866002157182!GO:0051537;2 iron, 2 sulfur cluster binding;0.0363987633437186!GO:0008143;poly(A) binding;0.0364146729244603!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0364682750449631!GO:0033043;regulation of organelle organization and biogenesis;0.0364682750449631!GO:0033559;unsaturated fatty acid metabolic process;0.0364682750449631!GO:0006636;unsaturated fatty acid biosynthetic process;0.0364682750449631!GO:0006270;DNA replication initiation;0.0369564041519196!GO:0000077;DNA damage checkpoint;0.0382994964889005!GO:0030031;cell projection biogenesis;0.0404016451676284!GO:0009225;nucleotide-sugar metabolic process;0.0409280257943916!GO:0030833;regulation of actin filament polymerization;0.0411461598821794!GO:0005663;DNA replication factor C complex;0.0413586873273528!GO:0005732;small nucleolar ribonucleoprotein complex;0.0416101708970082!GO:0007033;vacuole organization and biogenesis;0.0416101708970082!GO:0031543;peptidyl-proline dioxygenase activity;0.0417761766201353!GO:0008047;enzyme activator activity;0.0417761766201353!GO:0019798;procollagen-proline dioxygenase activity;0.041910630616501!GO:0030496;midbody;0.042044364518189!GO:0006400;tRNA modification;0.0423514417989401!GO:0022415;viral reproductive process;0.0424309969408573!GO:0019206;nucleoside kinase activity;0.0424800003952328!GO:0000070;mitotic sister chromatid segregation;0.0452064399503769!GO:0006607;NLS-bearing substrate import into nucleus;0.0459928424670182!GO:0042769;DNA damage response, detection of DNA damage;0.04683692147256!GO:0030433;ER-associated protein catabolic process;0.046908578087548!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.046908578087548!GO:0009119;ribonucleoside metabolic process;0.046961853724608!GO:0008097;5S rRNA binding;0.046961853724608!GO:0008017;microtubule binding;0.0471792701152946!GO:0006596;polyamine biosynthetic process;0.0471792701152946!GO:0045941;positive regulation of transcription;0.0475524862341939!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0480562520706563!GO:0006730;one-carbon compound metabolic process;0.0489068193331592!GO:0004523;ribonuclease H activity;0.0489068193331592!GO:0005774;vacuolar membrane;0.0490819085819641!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0491632755768472!GO:0000819;sister chromatid segregation;0.0492840033713777!GO:0006767;water-soluble vitamin metabolic process;0.0496596363655368 | |||
|sample_id=11451 | |sample_id=11451 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=GFI1:1.31569145136;NKX2-2,8:1.13191857859;PBX1:1.11370941463;GFI1B:1.05331206875;NR3C1:1.04913048918;RXR{A,B,G}:1.01763179142;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.963016967466;HOX{A5,B5}:0.957689982476;YY1:0.9473296229;E2F1..5:0.920682446274;NKX3-1:0.913789868499;GZF1:0.805678952147;SRF:0.803147674727;UFEwm:0.798068631266;HES1:0.749504351894;ELK1,4_GABP{A,B1}:0.726185236695;PAX4:0.725416868533;PDX1:0.703910153051;TAL1_TCF{3,4,12}:0.67877983275;ALX4:0.637408242971;EN1,2:0.626830147729;ZNF143:0.621888268053;NFY{A,B,C}:0.612845729786;TFAP4:0.59129000876;POU3F1..4:0.566670557266;HOX{A4,D4}:0.554979435061;KLF4:0.55331632881;IKZF1:0.541671078869;TLX1..3_NFIC{dimer}:0.540952779023;AHR_ARNT_ARNT2:0.52026638217;ZNF238:0.517531924209;STAT1,3:0.510964255334;TEAD1:0.510062352541;NRF1:0.501185347237;EBF1:0.500711365715;NFE2L1:0.486725078945;FOXP1:0.482170290354;NR1H4:0.470886422555;HOXA9_MEIS1:0.464776481566;NANOG{mouse}:0.456722795881;ESRRA:0.426128369787;ATF6:0.415081137623;ESR1:0.410184112998;SOX17:0.402092244092;NKX2-1,4:0.389635635706;TFDP1:0.376552513256;TBP:0.369327718623;MZF1:0.360839266545;HSF1,2:0.347410716678;AIRE:0.314476062586;TOPORS:0.311470476222;RXRA_VDR{dimer}:0.306075091855;FOXL1:0.299367902508;POU6F1:0.296366276541;AR:0.287958047102;EVI1:0.281007929941;GLI1..3:0.266163137572;MYBL2:0.265857242161;STAT5{A,B}:0.245312576299;FOXM1:0.24049107112;ZIC1..3:0.227081433678;PAX5:0.226560935151;MEF2{A,B,C,D}:0.225435206449;POU2F1..3:0.220770849829;PAX8:0.21644547318;FOXD3:0.20697645337;NKX3-2:0.197156801226;POU1F1:0.185211645906;MYB:0.177271454718;SPZ1:0.164069628197;NFIX:0.160087043285;CDC5L:0.153887283853;XCPE1{core}:0.150162805808;NR5A1,2:0.147649288361;PITX1..3:0.144121821191;HNF4A_NR2F1,2:0.142428251177;GTF2A1,2:0.137149674945;STAT2,4,6:0.134834203854;TFCP2:0.112850835779;BACH2:0.110051884378;PAX3,7:0.101079723418;T:0.0929110365988;TEF:0.0879753670503;TBX4,5:0.0861608027679;XBP1:0.0861184074431;LEF1_TCF7_TCF7L1,2:0.0816930819338;GTF2I:0.0816454169332;ALX1:0.0745520442376;ZBTB6:0.0602956401353;PRRX1,2:0.0488072889503;LHX3,4:0.0468987040072;TP53:0.0368372338683;PAX1,9:0.0318642482144;HIF1A:0.0317083803782;ZBTB16:0.0177021358046;DBP:0.0172499841587;ONECUT1,2:0.00859794441482;bHLH_family:0.00699873886467;TFAP2{A,C}:-0.0100051028313;GATA4:-0.0112129016122;ZNF148:-0.0150847701557;EGR1..3:-0.02357171375;ARID5B:-0.0243700464986;CREB1:-0.0352711396572;NR6A1:-0.0384075970276;HNF1A:-0.0395379327448;FOS_FOS{B,L1}_JUN{B,D}:-0.0399713574042;ELF1,2,4:-0.0404593560697;HIC1:-0.0422813248734;NFATC1..3:-0.0452165940824;HLF:-0.0494837637547;NHLH1,2:-0.074952597227;BREu{core}:-0.0796922494975;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0855750546613;GCM1,2:-0.0858812356022;MTF1:-0.0991979163943;ZNF384:-0.107875089513;RBPJ:-0.115121019493;NKX6-1,2:-0.116182461418;NFE2L2:-0.119648512184;PRDM1:-0.133613871462;RFX1:-0.135577351664;SOX5:-0.153512428675;MAZ:-0.159926360587;DMAP1_NCOR{1,2}_SMARC:-0.167983932751;ZFP161:-0.168781237559;PATZ1:-0.177192868978;CRX:-0.198610453009;PPARG:-0.199945973877;ADNP_IRX_SIX_ZHX:-0.208440483888;SP1:-0.214186939543;FOSL2:-0.240732848811;RUNX1..3:-0.242993460248;CEBPA,B_DDIT3:-0.247595975066;ZNF423:-0.257335273724;NFE2:-0.273181358651;NKX2-3_NKX2-5:-0.285522995421;TGIF1:-0.297091904646;MAFB:-0.299385037793;MYOD1:-0.307751916165;SOX{8,9,10}:-0.308947401987;NFKB1_REL_RELA:-0.309259582971;CDX1,2,4:-0.310370007242;IKZF2:-0.315885201586;FOXP3:-0.329573752036;SMAD1..7,9:-0.35850502557;CUX2:-0.391121525237;REST:-0.391203311788;MYFfamily:-0.391980185687;PAX6:-0.411559228682;RFX2..5_RFXANK_RFXAP:-0.425783575496;SPI1:-0.439918534287;HAND1,2:-0.460389701171;RREB1:-0.470721086439;MTE{core}:-0.478393472495;JUN:-0.478544191072;TFAP2B:-0.486515649215;NANOG:-0.490557827887;PAX2:-0.506389812346;ATF5_CREB3:-0.529564772376;IRF1,2:-0.567403350687;EP300:-0.567625852103;OCT4_SOX2{dimer}:-0.571062554873;ATF2:-0.573309648371;ETS1,2:-0.578670998733;MED-1{core}:-0.584299105018;FOXO1,3,4:-0.600635104108;SPIB:-0.610295197743;FOX{I1,J2}:-0.62252737251;ATF4:-0.625582583024;SOX2:-0.670376108174;BPTF:-0.683496391165;NFIL3:-0.684550543444;SNAI1..3:-0.703150295275;RORA:-0.733230599878;HMX1:-0.734660418035;IRF7:-0.735912402212;HMGA1,2:-0.736370303716;GATA6:-0.744764411616;POU5F1:-0.778740592237;FOXN1:-0.825787343635;SREBF1,2:-0.844085268649;VSX1,2:-0.847166516155;TLX2:-0.851480387149;FOXA2:-0.88848083746;FOXQ1:-0.893631810248;FOX{F1,F2,J1}:-0.929998549997;LMO2:-0.973736119987;ZEB1:-0.985249226555;FOX{D1,D2}:-1.01215878215;HOX{A6,A7,B6,B7}:-1.08382793595;HBP1_HMGB_SSRP1_UBTF:-1.12717848136 | |top_motifs=GFI1:1.31569145136;NKX2-2,8:1.13191857859;PBX1:1.11370941463;GFI1B:1.05331206875;NR3C1:1.04913048918;RXR{A,B,G}:1.01763179142;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.963016967466;HOX{A5,B5}:0.957689982476;YY1:0.9473296229;E2F1..5:0.920682446274;NKX3-1:0.913789868499;GZF1:0.805678952147;SRF:0.803147674727;UFEwm:0.798068631266;HES1:0.749504351894;ELK1,4_GABP{A,B1}:0.726185236695;PAX4:0.725416868533;PDX1:0.703910153051;TAL1_TCF{3,4,12}:0.67877983275;ALX4:0.637408242971;EN1,2:0.626830147729;ZNF143:0.621888268053;NFY{A,B,C}:0.612845729786;TFAP4:0.59129000876;POU3F1..4:0.566670557266;HOX{A4,D4}:0.554979435061;KLF4:0.55331632881;IKZF1:0.541671078869;TLX1..3_NFIC{dimer}:0.540952779023;AHR_ARNT_ARNT2:0.52026638217;ZNF238:0.517531924209;STAT1,3:0.510964255334;TEAD1:0.510062352541;NRF1:0.501185347237;EBF1:0.500711365715;NFE2L1:0.486725078945;FOXP1:0.482170290354;NR1H4:0.470886422555;HOXA9_MEIS1:0.464776481566;NANOG{mouse}:0.456722795881;ESRRA:0.426128369787;ATF6:0.415081137623;ESR1:0.410184112998;SOX17:0.402092244092;NKX2-1,4:0.389635635706;TFDP1:0.376552513256;TBP:0.369327718623;MZF1:0.360839266545;HSF1,2:0.347410716678;AIRE:0.314476062586;TOPORS:0.311470476222;RXRA_VDR{dimer}:0.306075091855;FOXL1:0.299367902508;POU6F1:0.296366276541;AR:0.287958047102;EVI1:0.281007929941;GLI1..3:0.266163137572;MYBL2:0.265857242161;STAT5{A,B}:0.245312576299;FOXM1:0.24049107112;ZIC1..3:0.227081433678;PAX5:0.226560935151;MEF2{A,B,C,D}:0.225435206449;POU2F1..3:0.220770849829;PAX8:0.21644547318;FOXD3:0.20697645337;NKX3-2:0.197156801226;POU1F1:0.185211645906;MYB:0.177271454718;SPZ1:0.164069628197;NFIX:0.160087043285;CDC5L:0.153887283853;XCPE1{core}:0.150162805808;NR5A1,2:0.147649288361;PITX1..3:0.144121821191;HNF4A_NR2F1,2:0.142428251177;GTF2A1,2:0.137149674945;STAT2,4,6:0.134834203854;TFCP2:0.112850835779;BACH2:0.110051884378;PAX3,7:0.101079723418;T:0.0929110365988;TEF:0.0879753670503;TBX4,5:0.0861608027679;XBP1:0.0861184074431;LEF1_TCF7_TCF7L1,2:0.0816930819338;GTF2I:0.0816454169332;ALX1:0.0745520442376;ZBTB6:0.0602956401353;PRRX1,2:0.0488072889503;LHX3,4:0.0468987040072;TP53:0.0368372338683;PAX1,9:0.0318642482144;HIF1A:0.0317083803782;ZBTB16:0.0177021358046;DBP:0.0172499841587;ONECUT1,2:0.00859794441482;bHLH_family:0.00699873886467;TFAP2{A,C}:-0.0100051028313;GATA4:-0.0112129016122;ZNF148:-0.0150847701557;EGR1..3:-0.02357171375;ARID5B:-0.0243700464986;CREB1:-0.0352711396572;NR6A1:-0.0384075970276;HNF1A:-0.0395379327448;FOS_FOS{B,L1}_JUN{B,D}:-0.0399713574042;ELF1,2,4:-0.0404593560697;HIC1:-0.0422813248734;NFATC1..3:-0.0452165940824;HLF:-0.0494837637547;NHLH1,2:-0.074952597227;BREu{core}:-0.0796922494975;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0855750546613;GCM1,2:-0.0858812356022;MTF1:-0.0991979163943;ZNF384:-0.107875089513;RBPJ:-0.115121019493;NKX6-1,2:-0.116182461418;NFE2L2:-0.119648512184;PRDM1:-0.133613871462;RFX1:-0.135577351664;SOX5:-0.153512428675;MAZ:-0.159926360587;DMAP1_NCOR{1,2}_SMARC:-0.167983932751;ZFP161:-0.168781237559;PATZ1:-0.177192868978;CRX:-0.198610453009;PPARG:-0.199945973877;ADNP_IRX_SIX_ZHX:-0.208440483888;SP1:-0.214186939543;FOSL2:-0.240732848811;RUNX1..3:-0.242993460248;CEBPA,B_DDIT3:-0.247595975066;ZNF423:-0.257335273724;NFE2:-0.273181358651;NKX2-3_NKX2-5:-0.285522995421;TGIF1:-0.297091904646;MAFB:-0.299385037793;MYOD1:-0.307751916165;SOX{8,9,10}:-0.308947401987;NFKB1_REL_RELA:-0.309259582971;CDX1,2,4:-0.310370007242;IKZF2:-0.315885201586;FOXP3:-0.329573752036;SMAD1..7,9:-0.35850502557;CUX2:-0.391121525237;REST:-0.391203311788;MYFfamily:-0.391980185687;PAX6:-0.411559228682;RFX2..5_RFXANK_RFXAP:-0.425783575496;SPI1:-0.439918534287;HAND1,2:-0.460389701171;RREB1:-0.470721086439;MTE{core}:-0.478393472495;JUN:-0.478544191072;TFAP2B:-0.486515649215;NANOG:-0.490557827887;PAX2:-0.506389812346;ATF5_CREB3:-0.529564772376;IRF1,2:-0.567403350687;EP300:-0.567625852103;OCT4_SOX2{dimer}:-0.571062554873;ATF2:-0.573309648371;ETS1,2:-0.578670998733;MED-1{core}:-0.584299105018;FOXO1,3,4:-0.600635104108;SPIB:-0.610295197743;FOX{I1,J2}:-0.62252737251;ATF4:-0.625582583024;SOX2:-0.670376108174;BPTF:-0.683496391165;NFIL3:-0.684550543444;SNAI1..3:-0.703150295275;RORA:-0.733230599878;HMX1:-0.734660418035;IRF7:-0.735912402212;HMGA1,2:-0.736370303716;GATA6:-0.744764411616;POU5F1:-0.778740592237;FOXN1:-0.825787343635;SREBF1,2:-0.844085268649;VSX1,2:-0.847166516155;TLX2:-0.851480387149;FOXA2:-0.88848083746;FOXQ1:-0.893631810248;FOX{F1,F2,J1}:-0.929998549997;LMO2:-0.973736119987;ZEB1:-0.985249226555;FOX{D1,D2}:-1.01215878215;HOX{A6,A7,B6,B7}:-1.08382793595;HBP1_HMGB_SSRP1_UBTF:-1.12717848136 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11451-119A2;search_select_hide=table117:FF:11451-119A2 | |||
}} | }} | ||
Latest revision as of 18:01, 4 June 2020
| Name: | Skeletal Muscle Cells, donor4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12053 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12053
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12053
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.478 |
| 10 | 10 | 0.0686 |
| 100 | 100 | 0.551 |
| 101 | 101 | 0.204 |
| 102 | 102 | 0.503 |
| 103 | 103 | 0.92 |
| 104 | 104 | 0.916 |
| 105 | 105 | 0.735 |
| 106 | 106 | 4.39056e-5 |
| 107 | 107 | 0.932 |
| 108 | 108 | 0.771 |
| 109 | 109 | 0.603 |
| 11 | 11 | 0.339 |
| 110 | 110 | 0.00706 |
| 111 | 111 | 0.928 |
| 112 | 112 | 0.101 |
| 113 | 113 | 0.0578 |
| 114 | 114 | 0.227 |
| 115 | 115 | 0.757 |
| 116 | 116 | 0.143 |
| 117 | 117 | 0.275 |
| 118 | 118 | 0.628 |
| 119 | 119 | 0.391 |
| 12 | 12 | 0.347 |
| 120 | 120 | 0.12 |
| 121 | 121 | 0.71 |
| 122 | 122 | 0.0115 |
| 123 | 123 | 0.062 |
| 124 | 124 | 0.366 |
| 125 | 125 | 0.894 |
| 126 | 126 | 0.905 |
| 127 | 127 | 0.0713 |
| 128 | 128 | 0.139 |
| 129 | 129 | 0.155 |
| 13 | 13 | 0.103 |
| 130 | 130 | 0.175 |
| 131 | 131 | 0.522 |
| 132 | 132 | 0.759 |
| 133 | 133 | 0.605 |
| 134 | 134 | 0.397 |
| 135 | 135 | 0.0622 |
| 136 | 136 | 0.057 |
| 137 | 137 | 0.0696 |
| 138 | 138 | 0.0443 |
| 139 | 139 | 0.139 |
| 14 | 14 | 0.223 |
| 140 | 140 | 0.138 |
| 141 | 141 | 0.435 |
| 142 | 142 | 0.74 |
| 143 | 143 | 0.255 |
| 144 | 144 | 0.869 |
| 145 | 145 | 0.747 |
| 146 | 146 | 0.874 |
| 147 | 147 | 0.565 |
| 148 | 148 | 0.533 |
| 149 | 149 | 0.461 |
| 15 | 15 | 0.226 |
| 150 | 150 | 0.807 |
| 151 | 151 | 0.55 |
| 152 | 152 | 0.273 |
| 153 | 153 | 0.501 |
| 154 | 154 | 0.639 |
| 155 | 155 | 0.06 |
| 156 | 156 | 0.214 |
| 157 | 157 | 0.456 |
| 158 | 158 | 0.0116 |
| 159 | 159 | 0.071 |
| 16 | 16 | 0.606 |
| 160 | 160 | 0.377 |
| 161 | 161 | 0.948 |
| 162 | 162 | 0.397 |
| 163 | 163 | 0.722 |
| 164 | 164 | 0.275 |
| 165 | 165 | 0.32 |
| 166 | 166 | 0.168 |
| 167 | 167 | 0.335 |
| 168 | 168 | 0.33 |
| 169 | 169 | 0.569 |
| 17 | 17 | 0.761 |
| 18 | 18 | 0.617 |
| 19 | 19 | 0.205 |
| 2 | 2 | 0.924 |
| 20 | 20 | 0.714 |
| 21 | 21 | 0.0268 |
| 22 | 22 | 0.831 |
| 23 | 23 | 0.027 |
| 24 | 24 | 0.704 |
| 25 | 25 | 0.641 |
| 26 | 26 | 0.199 |
| 27 | 27 | 0.648 |
| 28 | 28 | 0.0963 |
| 29 | 29 | 0.124 |
| 3 | 3 | 0.942 |
| 30 | 30 | 0.933 |
| 31 | 31 | 0.406 |
| 32 | 32 | 0.01 |
| 33 | 33 | 0.402 |
| 34 | 34 | 0.697 |
| 35 | 35 | 0.344 |
| 36 | 36 | 0.521 |
| 37 | 37 | 0.871 |
| 38 | 38 | 0.404 |
| 39 | 39 | 0.516 |
| 4 | 4 | 0.0308 |
| 40 | 40 | 0.296 |
| 41 | 41 | 0.0061 |
| 42 | 42 | 0.727 |
| 43 | 43 | 0.534 |
| 44 | 44 | 0.421 |
| 45 | 45 | 0.114 |
| 46 | 46 | 0.77 |
| 47 | 47 | 0.738 |
| 48 | 48 | 0.4 |
| 49 | 49 | 0.18 |
| 5 | 5 | 0.327 |
| 50 | 50 | 0.393 |
| 51 | 51 | 0.651 |
| 52 | 52 | 0.156 |
| 53 | 53 | 0.3 |
| 54 | 54 | 0.418 |
| 55 | 55 | 0.572 |
| 56 | 56 | 0.901 |
| 57 | 57 | 0.985 |
| 58 | 58 | 0.191 |
| 59 | 59 | 0.986 |
| 6 | 6 | 0.417 |
| 60 | 60 | 0.0523 |
| 61 | 61 | 0.498 |
| 62 | 62 | 0.198 |
| 63 | 63 | 0.97 |
| 64 | 64 | 0.896 |
| 65 | 65 | 0.309 |
| 66 | 66 | 0.332 |
| 67 | 67 | 0.604 |
| 68 | 68 | 0.298 |
| 69 | 69 | 0.586 |
| 7 | 7 | 0.714 |
| 70 | 70 | 0.0448 |
| 71 | 71 | 0.251 |
| 72 | 72 | 0.232 |
| 73 | 73 | 0.577 |
| 74 | 74 | 0.739 |
| 75 | 75 | 0.405 |
| 76 | 76 | 0.713 |
| 77 | 77 | 0.973 |
| 78 | 78 | 0.905 |
| 79 | 79 | 0.131 |
| 8 | 8 | 0.271 |
| 80 | 80 | 0.0966 |
| 81 | 81 | 0.699 |
| 82 | 82 | 0.0427 |
| 83 | 83 | 0.961 |
| 84 | 84 | 0.717 |
| 85 | 85 | 0.0129 |
| 86 | 86 | 0.547 |
| 87 | 87 | 0.0463 |
| 88 | 88 | 0.917 |
| 89 | 89 | 0.89 |
| 9 | 9 | 0.897 |
| 90 | 90 | 0.64 |
| 91 | 91 | 0.239 |
| 92 | 92 | 0.584 |
| 93 | 93 | 0.769 |
| 94 | 94 | 0.849 |
| 95 | 95 | 0.196 |
| 96 | 96 | 0.295 |
| 97 | 97 | 0.854 |
| 98 | 98 | 0.281 |
| 99 | 99 | 0.00256 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12053
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
