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(Created page with "{{f5samples |id=FF:11451-119A2 |name=Skeletal Muscle Cells, donor4 |sample_id=11451 |rna_tube_id=119A2 |rna_box=119 |rna_position=A2 |sample_cell_lot=N/A |sample_cell_...")
 
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{{f5samples
{{f5samples
|id=FF:11451-119A2
|DRA_sample_Accession=CAGE@SAMD00005833
|name=Skeletal Muscle Cells, donor4
|accession_numbers=CAGE;DRX008455;DRR009327;DRZ000752;DRZ002137;DRZ012102;DRZ013487
|sample_id=11451
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|rna_tube_id=119A2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188
|rna_box=119
|rna_position=A2
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=487.00000
|rna_catalog_number=SC3505
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=skeletal muscle
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=skeletal muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.68900
|sample_note=
|profile_hcage=CNhs12053,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000188,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004120,UBERON:0004290,UBERON:0005291,UBERON:0005423,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000162
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!1.83!75.33!PPARG;;chr8:25902876..25902936,-!p1@EBF2!1.79!60.39!EBF2;;chr1:203055129..203055147,-!p1@MYOG!1.44!26.65!MYOG;;chr7:19157248..19157268,-!p1@TWIST1!1.38!62.54!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.26!42.67!EBF1;;chr7:15726296..15726315,-!p1@MEOX2!1.18!14.02!MEOX2;;chr12:66218183..66218209,+!p4@HMGA2!1.12!23.26!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.12!16.79!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.50!HMGA2;;chr2:45236540..45236577,-!p1@SIX2!1.06!10.48!SIX2;;chr7:15726243..15726293,-!p2@MEOX2!1.05!10.32!MEOX2;;chr6:34204921..34204939,+!p3@HMGA1!1.04!299.32!HMGA1;;chr3:25470156..25470227,+!p2@RARB!1.04!10.01!RARB;;chr14:61116183..61116208,-!p1@SIX1!1.03!37.28!SIX1;;chr12:66218598..66218645,+!p2@HMGA2!1.02!44.98!HMGA2;;chr3:12329397..12329433,+!p2@PPARG!1.02!21.87!PPARG;;chr1:170633262..170633285,+!p3@PRRX1!1.02!10.78!PRRX1;;chr11:17741111..17741124,+!p1@MYOD1!0.98!8.47!MYOD1;;chr12:66218212..66218244,+!p5@HMGA2!0.96!12.02!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.95!7.86!EBF3;;chr2:176994408..176994492,+!p1@HOXD8!0.94!7.70!HOXD8;;chr8:22550982..22550999,-!p1@EGR3!0.93!21.72!EGR3;;chr17:1959369..1959388,+!p2@HIC1!0.92!20.18!HIC1;;chr3:12329358..12329393,+!p3@PPARG!0.91!18.02!PPARG;;chr1:170632285..170632309,+!p1@PRRX1!0.90!8.01!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!0.89!6.78!NPAS1;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.90!SNAI2;;chr5:137804484..137804498,+!p2@EGR1!0.88!27.88!EGR1;;chr19:46801639..46801699,+!p1@HIF3A!0.88!6.62!HIF3A;;chr7:19157043..19157088,-!p2@TWIST1!0.87!16.95!TWIST1;;chr21:47063625..47063658,+!p1@PCBP3!0.86!28.50!PCBP3;;chr15:57511609..57511651,+!p2@TCF12!0.86!10.78!TCF12;;chr19:45260775..45260838,+!p5@BCL3!0.86!8.32!BCL3;;chr2:5832508..5832524,+!p1@SOX11!0.86!6.32!SOX11;;chr11:47279504..47279563,+!p1@NR1H3!0.83!13.71!NR1H3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.83!5.70!HOXC5;;chr12:66218378..66218401,+!p6@HMGA2!0.82!8.93!HMGA2;;chr8:128748308..128748324,+!p2@MYC!0.81!163.91!MYC;;chr2:169312600..169312606,+!p2@CERS6!0.81!8.93!CERS6;;chr2:45236579..45236596,-!p2@SIX2!0.81!5.39!SIX2;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.40!ZFP106;;chr5:158527104..158527135,-!p4@EBF1!0.77!4.93!EBF1;;chr12:54447637..54447659,+!p4@HOXC4!0.76!4.78!HOXC4;;chr11:113930425..113930471,+!p1@ZBTB16!0.75!6.93!ZBTB16;;chr9:4300050..4300118,-!p1@GLIS3!0.73!31.58!GLIS3;;chr17:1958388..1958404,+!p1@HIC1!0.73!31.27!HIC1;;chr7:27183291..27183324,-!p1@HOXA5!0.71!4.16!HOXA5;;chr1:170632959..170632987,+!p4@PRRX1!0.70!4.47!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.70!4.01!BNC2;;chr1:8934931..8934947,-!p4@ENO1!0.69!14.48!ENO1;;chr7:15726220..15726236,-!p4@MEOX2!0.69!3.85!MEOX2;;chr7:27183263..27183284,-!p2@HOXA5!0.69!3.85!HOXA5;;chr20:30193083..30193098,+!p1@ID1!0.68!356.78!ID1;;chr8:49833978..49833996,-!p1@SNAI2!0.68!90.73!SNAI2;;chr17:59477233..59477263,+!p1@TBX2!0.68!12.94!TBX2;;chr10:114710244..114710257,+!p3@TCF7L2!0.67!11.25!TCF7L2;;chr12:66218420..66218439,+!p12@HMGA2!0.66!3.54!HMGA2;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.47!BNC2;;chr20:51588873..51588953,+!p1@TSHZ2!0.64!4.62!TSHZ2;;chr12:54447599..54447630,+!p3@HOXC4!0.64!4.31!HOXC4;;chr4:299227..299272,-!p1@ZNF732!0.64!3.39!ZNF732;;chr11:65686802..65686818,+!p6@DRAP1!0.63!6.16!DRAP1;;chr9:16870710..16870763,-!p1@BNC2!0.63!6.16!BNC2;;chr17:41622765..41622821,-!p2@ETV4!0.63!5.39!ETV4;;chr3:147111231..147111281,+!p3@ZIC1!0.63!3.24!ZIC1;;chr8:77593750..77593757,+!p3@ZFHX4!0.63!3.24!ZFHX4;;chr20:42543441..42543497,+!p1@TOX2!0.62!16.48!TOX2;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.85!TWIST2;;chr6:45296048..45296082,+!p1@RUNX2!0.62!3.70!RUNX2;;chr12:2986206..2986258,-!p2@FOXM1!0.61!22.18!FOXM1;;chr5:92918919..92918942,+!p1@NR2F1!0.61!16.02!NR2F1;;chr6:85474299..85474324,-!p1@TBX18!0.61!6.01!TBX18;;chr17:59477197..59477212,+!p2@TBX2!0.61!5.85!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.61!5.70!CREB3L1;;chr1:170632723..170632739,+!p8@PRRX1!0.61!3.08!PRRX1;;chr6:34204672..34204692,+!p1@HMGA1!0.60!408.38!HMGA1;;chr1:158979792..158979814,+!p2@IFI16!0.60!34.51!IFI16;;chr12:66218836..66218888,+!p1@HMGA2!0.60!33.74!HMGA2;;chr15:37392724..37392757,-!p1@MEIS2!0.60!16.02!MEIS2;;chr2:239756671..239756732,+!p1@TWIST2!0.60!11.09!TWIST2;;chr11:46299199..46299233,+!p1@CREB3L1!0.59!18.02!CREB3L1;;chr17:46655704..46655718,-!p2@HOXB4!0.59!4.62!HOXB4;;chr1:119530493..119530572,-!p1@TBX15!0.59!2.93!TBX15;;chr11:65686732..65686756,+!p2@DRAP1!0.58!14.02!DRAP1;;chr1:158979872..158979898,+!p3@IFI16!0.58!10.01!IFI16;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.24!HOXB2;;chr9:14082760..14082775,-!p6@NFIB!0.58!5.08!NFIB;;chr12:66218152..66218174,+!p10@HMGA2!0.58!3.08!HMGA2;;chr11:125034605..125034636,+!p2@PKNOX2!0.58!2.77!PKNOX2;;chr12:54447686..54447704,+!p5@HOXC4!0.58!2.77!HOXC4;;chr9:16728327..16728338,-!p5@BNC2!0.58!2.77!BNC2;;chr7:27192185..27192209,-!p1@HOXA3!0.58!2.77!HOXA3;;chr1:170633194..170633205,+!p18@PRRX1!0.58!2.77!PRRX1;;chr2:119604456..119604501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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
|ffid_belonging_in_development=CL:0000355,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor4.CNhs12053.11451-119A2.hg38.nobarcode.ctss.bed.gz
|id=FF:11451-119A2
|is_a=EFO:0002091;;FF:0000162
|is_obsolete=
|library_id=CNhs12053
|library_id_phase_based=2:CNhs12053
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11451
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11451
|name=Skeletal Muscle Cells, donor4
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12053,LSID838,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_catalog_number=SC3505
|rna_concentration=0.689
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=487
|rna_od260/230=
|rna_od260/280=
|rna_position=A2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=119A2
|rna_weight_ug=10
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=skeletal muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.38126233735608e-274!GO:0043226;organelle;4.32874830081399e-223!GO:0043229;intracellular organelle;8.09631134250858e-223!GO:0043231;intracellular membrane-bound organelle;1.07132025276254e-213!GO:0043227;membrane-bound organelle;2.69824746244969e-213!GO:0005737;cytoplasm;2.66136960898385e-206!GO:0044422;organelle part;4.46379703757487e-174!GO:0044446;intracellular organelle part;1.25389325306111e-172!GO:0044444;cytoplasmic part;1.34299596100204e-150!GO:0032991;macromolecular complex;2.02001794234472e-120!GO:0030529;ribonucleoprotein complex;1.27231347697754e-103!GO:0044237;cellular metabolic process;3.58338665015381e-99!GO:0044238;primary metabolic process;2.03249998991626e-97!GO:0043233;organelle lumen;3.7406861791436e-88!GO:0031974;membrane-enclosed lumen;3.7406861791436e-88!GO:0005634;nucleus;5.72504868569542e-88!GO:0043170;macromolecule metabolic process;2.56422452260795e-87!GO:0005739;mitochondrion;7.96154239842416e-86!GO:0044428;nuclear part;7.3048574067445e-85!GO:0003723;RNA binding;1.07646007096549e-78!GO:0005515;protein binding;1.89334176028055e-76!GO:0005840;ribosome;1.21181961297701e-62!GO:0043234;protein complex;2.40415125746898e-60!GO:0006396;RNA processing;5.69975212994063e-58!GO:0044429;mitochondrial part;9.42885086171656e-58!GO:0006412;translation;2.21310111817929e-55!GO:0003735;structural constituent of ribosome;2.32408416656536e-54!GO:0031090;organelle membrane;5.33811852395533e-54!GO:0016043;cellular component organization and biogenesis;9.95439990099145e-54!GO:0031967;organelle envelope;1.02336072529422e-50!GO:0031981;nuclear lumen;1.86073163389303e-50!GO:0031975;envelope;2.22517802447796e-50!GO:0043283;biopolymer metabolic process;2.37490497012911e-48!GO:0019538;protein metabolic process;3.63204820275605e-48!GO:0043228;non-membrane-bound organelle;9.10697371341585e-48!GO:0043232;intracellular non-membrane-bound organelle;9.10697371341585e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.60986240303476e-47!GO:0009058;biosynthetic process;3.7859375609212e-47!GO:0033279;ribosomal subunit;1.17392364764572e-46!GO:0010467;gene expression;4.32470236725991e-46!GO:0044249;cellular biosynthetic process;1.53301201912817e-44!GO:0044260;cellular macromolecule metabolic process;3.30810309030164e-43!GO:0044267;cellular protein metabolic process;1.7076208100715e-42!GO:0015031;protein transport;2.10887265662933e-42!GO:0033036;macromolecule localization;3.180429981616e-42!GO:0009059;macromolecule biosynthetic process;5.98582611797509e-42!GO:0016071;mRNA metabolic process;6.70845587156925e-42!GO:0005829;cytosol;1.92338108010533e-41!GO:0006996;organelle organization and biogenesis;1.49490367732733e-40!GO:0008380;RNA splicing;6.91808140636146e-40!GO:0045184;establishment of protein localization;7.52717470640958e-39!GO:0008104;protein localization;9.48872257262811e-39!GO:0046907;intracellular transport;1.28234137838629e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.91908490682633e-37!GO:0005740;mitochondrial envelope;8.40887079624791e-37!GO:0006397;mRNA processing;3.9191607209452e-36!GO:0006259;DNA metabolic process;3.76261145005033e-35!GO:0065003;macromolecular complex assembly;8.94398238063701e-35!GO:0031966;mitochondrial membrane;1.45517835740424e-34!GO:0019866;organelle inner membrane;2.27510362363123e-33!GO:0022607;cellular component assembly;2.32700324835358e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.32997579486509e-32!GO:0005743;mitochondrial inner membrane;2.02852224976749e-31!GO:0006886;intracellular protein transport;1.43482777845399e-30!GO:0005654;nucleoplasm;1.24121137408944e-29!GO:0007049;cell cycle;7.11733977613306e-29!GO:0005681;spliceosome;5.51442848403093e-28!GO:0003676;nucleic acid binding;1.71373103290389e-27!GO:0031980;mitochondrial lumen;1.57391842198166e-25!GO:0005759;mitochondrial matrix;1.57391842198166e-25!GO:0044445;cytosolic part;2.03468511802737e-25!GO:0006119;oxidative phosphorylation;6.79206244591633e-25!GO:0000166;nucleotide binding;8.01681084961095e-25!GO:0015934;large ribosomal subunit;9.44107378801423e-25!GO:0044451;nucleoplasm part;7.10631260524771e-24!GO:0044455;mitochondrial membrane part;7.67631011648044e-24!GO:0000278;mitotic cell cycle;9.15725797236905e-24!GO:0051641;cellular localization;1.25023347371493e-23!GO:0051649;establishment of cellular localization;1.43136964141133e-23!GO:0022402;cell cycle process;4.48263853959241e-23!GO:0015935;small ribosomal subunit;4.60552885565663e-23!GO:0005730;nucleolus;3.29573025201614e-22!GO:0006457;protein folding;1.00536973167734e-21!GO:0006974;response to DNA damage stimulus;1.53119787440988e-21!GO:0016462;pyrophosphatase activity;2.79199120015693e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.21773019384327e-21!GO:0012505;endomembrane system;5.05217781699801e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;7.31718209762168e-21!GO:0017111;nucleoside-triphosphatase activity;2.36591140578382e-20!GO:0005746;mitochondrial respiratory chain;5.2572030297444e-20!GO:0016070;RNA metabolic process;1.53001592119401e-19!GO:0051186;cofactor metabolic process;1.79479490863444e-19!GO:0022618;protein-RNA complex assembly;2.66463248713387e-19!GO:0005694;chromosome;3.11048490688869e-19!GO:0005783;endoplasmic reticulum;3.82256664223526e-19!GO:0005761;mitochondrial ribosome;4.11784069391863e-19!GO:0000313;organellar ribosome;4.11784069391863e-19!GO:0000087;M phase of mitotic cell cycle;6.42369552260695e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.14094198882676e-18!GO:0007067;mitosis;1.21260476506228e-18!GO:0042254;ribosome biogenesis and assembly;2.40962278685823e-18!GO:0022403;cell cycle phase;3.99611207836276e-18!GO:0050136;NADH dehydrogenase (quinone) activity;1.10190069134876e-17!GO:0003954;NADH dehydrogenase activity;1.10190069134876e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.10190069134876e-17!GO:0006281;DNA repair;1.40578432231972e-17!GO:0000502;proteasome complex (sensu Eukaryota);3.55172519468596e-17!GO:0044427;chromosomal part;3.66796534837068e-17!GO:0044432;endoplasmic reticulum part;4.89987290395925e-17!GO:0048770;pigment granule;5.28070159873053e-17!GO:0042470;melanosome;5.28070159873053e-17!GO:0016874;ligase activity;9.81412310999546e-17!GO:0017076;purine nucleotide binding;1.50464342133388e-16!GO:0006605;protein targeting;1.59792538489036e-16!GO:0044265;cellular macromolecule catabolic process;1.60634115268875e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.80620535814366e-16!GO:0006260;DNA replication;3.17138038279652e-16!GO:0032553;ribonucleotide binding;4.0007855675242e-16!GO:0032555;purine ribonucleotide binding;4.0007855675242e-16!GO:0008135;translation factor activity, nucleic acid binding;4.22964400666414e-16!GO:0042775;organelle ATP synthesis coupled electron transport;4.41537661109127e-16!GO:0042773;ATP synthesis coupled electron transport;4.41537661109127e-16!GO:0043285;biopolymer catabolic process;5.83010595234124e-16!GO:0030964;NADH dehydrogenase complex (quinone);7.61901315245812e-16!GO:0045271;respiratory chain complex I;7.61901315245812e-16!GO:0005747;mitochondrial respiratory chain complex I;7.61901315245812e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.6951156384184e-15!GO:0044248;cellular catabolic process;2.03577091559633e-15!GO:0009719;response to endogenous stimulus;2.09782445483789e-15!GO:0051301;cell division;2.1801580351344e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.40882495409346e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.57495639780565e-15!GO:0006512;ubiquitin cycle;2.61569872198741e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.22129858175017e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.36393214734483e-15!GO:0000375;RNA splicing, via transesterification reactions;3.36393214734483e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.36393214734483e-15!GO:0006732;coenzyme metabolic process;4.19730008716809e-15!GO:0000279;M phase;4.19730008716809e-15!GO:0019941;modification-dependent protein catabolic process;4.3829129052585e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.3829129052585e-15!GO:0006511;ubiquitin-dependent protein catabolic process;4.87037836679894e-15!GO:0009057;macromolecule catabolic process;4.98749238233412e-15!GO:0044257;cellular protein catabolic process;7.57120108492509e-15!GO:0008134;transcription factor binding;8.30286082190653e-15!GO:0005635;nuclear envelope;9.58966621313862e-15!GO:0005524;ATP binding;1.2659327766627e-14!GO:0051276;chromosome organization and biogenesis;1.29808258433632e-14!GO:0030554;adenyl nucleotide binding;1.56714178632686e-14!GO:0051082;unfolded protein binding;2.0732204503693e-14!GO:0032559;adenyl ribonucleotide binding;2.90462800764444e-14!GO:0048193;Golgi vesicle transport;6.89356404997255e-14!GO:0030163;protein catabolic process;1.32537824041468e-13!GO:0031965;nuclear membrane;1.53013300344229e-13!GO:0006399;tRNA metabolic process;1.88832621000547e-13!GO:0009055;electron carrier activity;2.64637969572272e-13!GO:0044453;nuclear membrane part;5.32653022754849e-13!GO:0016604;nuclear body;9.51925106674527e-13!GO:0005794;Golgi apparatus;9.89151114704215e-13!GO:0003743;translation initiation factor activity;1.03204739082533e-12!GO:0006364;rRNA processing;1.76617300840492e-12!GO:0000074;regulation of progression through cell cycle;2.74444689973105e-12!GO:0006413;translational initiation;3.04666893585718e-12!GO:0051726;regulation of cell cycle;4.57400311544861e-12!GO:0006913;nucleocytoplasmic transport;5.94681768124122e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.21388363305285e-12!GO:0005793;ER-Golgi intermediate compartment;7.38281099785643e-12!GO:0016072;rRNA metabolic process;7.38281099785643e-12!GO:0042623;ATPase activity, coupled;7.74600144763738e-12!GO:0016887;ATPase activity;1.00146548709368e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.10301681320083e-11!GO:0009259;ribonucleotide metabolic process;1.33353824643382e-11!GO:0051169;nuclear transport;1.60942367846386e-11!GO:0005789;endoplasmic reticulum membrane;1.71048522294838e-11!GO:0006163;purine nucleotide metabolic process;2.51704130397332e-11!GO:0006446;regulation of translational initiation;3.7263064259193e-11!GO:0006323;DNA packaging;3.7263064259193e-11!GO:0043412;biopolymer modification;5.98421803980608e-11!GO:0005643;nuclear pore;8.11762437213005e-11!GO:0004386;helicase activity;1.31292078416301e-10!GO:0065004;protein-DNA complex assembly;1.31600288439755e-10!GO:0009150;purine ribonucleotide metabolic process;1.70011756289669e-10!GO:0006164;purine nucleotide biosynthetic process;2.8596746726467e-10!GO:0065002;intracellular protein transport across a membrane;3.27882230732551e-10!GO:0016192;vesicle-mediated transport;3.67627012775799e-10!GO:0009260;ribonucleotide biosynthetic process;4.24641603167741e-10!GO:0008565;protein transporter activity;5.34149867920668e-10!GO:0009060;aerobic respiration;6.42721462407638e-10!GO:0017038;protein import;7.80881099430026e-10!GO:0016607;nuclear speck;8.23673458461391e-10!GO:0030532;small nuclear ribonucleoprotein complex;9.09112237138113e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.38282625867744e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.47655931915668e-10!GO:0004812;aminoacyl-tRNA ligase activity;9.47655931915668e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.47655931915668e-10!GO:0006333;chromatin assembly or disassembly;9.96713143003024e-10!GO:0051188;cofactor biosynthetic process;1.15661304362543e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.16916400300806e-09!GO:0000785;chromatin;1.34583048517964e-09!GO:0045333;cellular respiration;1.34583048517964e-09!GO:0016491;oxidoreductase activity;1.35656835622033e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.83794177236359e-09!GO:0043038;amino acid activation;1.86086060266925e-09!GO:0006418;tRNA aminoacylation for protein translation;1.86086060266925e-09!GO:0043039;tRNA aminoacylation;1.86086060266925e-09!GO:0006461;protein complex assembly;2.09843487960826e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.2244111104097e-09!GO:0009141;nucleoside triphosphate metabolic process;2.2244111104097e-09!GO:0003712;transcription cofactor activity;2.34688732088692e-09!GO:0008026;ATP-dependent helicase activity;2.41226910848818e-09!GO:0006464;protein modification process;2.91682929423804e-09!GO:0046930;pore complex;3.66636030099385e-09!GO:0003697;single-stranded DNA binding;3.78801310230022e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.0182221193059e-09!GO:0012501;programmed cell death;4.42443644151166e-09!GO:0006403;RNA localization;4.4260709337256e-09!GO:0043566;structure-specific DNA binding;4.5490291632575e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.68684993564242e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.68684993564242e-09!GO:0050657;nucleic acid transport;4.75345605273356e-09!GO:0051236;establishment of RNA localization;4.75345605273356e-09!GO:0050658;RNA transport;4.75345605273356e-09!GO:0009056;catabolic process;5.04845272697383e-09!GO:0006915;apoptosis;6.68175363502555e-09!GO:0015630;microtubule cytoskeleton;7.04903879022836e-09!GO:0006334;nucleosome assembly;1.10522426843253e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.69690678805941e-08!GO:0005788;endoplasmic reticulum lumen;1.72465201282921e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.90001110423951e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.90001110423951e-08!GO:0016853;isomerase activity;1.9052010267681e-08!GO:0006366;transcription from RNA polymerase II promoter;2.19574544785558e-08!GO:0006099;tricarboxylic acid cycle;2.25163841741628e-08!GO:0046356;acetyl-CoA catabolic process;2.25163841741628e-08!GO:0015986;ATP synthesis coupled proton transport;2.8016581526308e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.8016581526308e-08!GO:0009117;nucleotide metabolic process;2.92402587777841e-08!GO:0031497;chromatin assembly;3.98958285113999e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.05153328140633e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.05153328140633e-08!GO:0008219;cell death;4.21204955509276e-08!GO:0016265;death;4.21204955509276e-08!GO:0051187;cofactor catabolic process;4.31478774172004e-08!GO:0007005;mitochondrion organization and biogenesis;4.52209236126261e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.98678941095404e-08!GO:0043687;post-translational protein modification;5.10862880670779e-08!GO:0006261;DNA-dependent DNA replication;5.1320564905537e-08!GO:0006091;generation of precursor metabolites and energy;5.56415982759443e-08!GO:0006084;acetyl-CoA metabolic process;5.66165613100576e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.9307746563379e-08!GO:0046034;ATP metabolic process;6.79131928229849e-08!GO:0016779;nucleotidyltransferase activity;7.30059409860906e-08!GO:0009109;coenzyme catabolic process;7.69875505509009e-08!GO:0019829;cation-transporting ATPase activity;1.0445787101287e-07!GO:0009108;coenzyme biosynthetic process;1.22621439083521e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.27547453583254e-07!GO:0030120;vesicle coat;1.41675294535942e-07!GO:0030662;coated vesicle membrane;1.41675294535942e-07!GO:0016740;transferase activity;1.46247235709925e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.68548189332783e-07!GO:0008639;small protein conjugating enzyme activity;1.71011518023973e-07!GO:0051028;mRNA transport;1.89382003629163e-07!GO:0048523;negative regulation of cellular process;1.99964535234645e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.11895903947137e-07!GO:0005762;mitochondrial large ribosomal subunit;2.51866786797013e-07!GO:0000315;organellar large ribosomal subunit;2.51866786797013e-07!GO:0004842;ubiquitin-protein ligase activity;3.29194276573304e-07!GO:0000775;chromosome, pericentric region;3.80499866885186e-07!GO:0005667;transcription factor complex;3.85798743157478e-07!GO:0005813;centrosome;4.20721551918048e-07!GO:0045259;proton-transporting ATP synthase complex;4.39686499500231e-07!GO:0005819;spindle;4.72945744192288e-07!GO:0006754;ATP biosynthetic process;5.32841586838538e-07!GO:0006753;nucleoside phosphate metabolic process;5.32841586838538e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.40013114794092e-07!GO:0051170;nuclear import;6.18360178132315e-07!GO:0019787;small conjugating protein ligase activity;7.47135751846985e-07!GO:0048475;coated membrane;7.5561798167199e-07!GO:0030117;membrane coat;7.5561798167199e-07!GO:0000245;spliceosome assembly;7.60237774710156e-07!GO:0050794;regulation of cellular process;9.26255670242223e-07!GO:0051246;regulation of protein metabolic process;1.14028189096868e-06!GO:0006752;group transfer coenzyme metabolic process;1.15538073165536e-06!GO:0051329;interphase of mitotic cell cycle;1.19975625385302e-06!GO:0005815;microtubule organizing center;1.37272064919324e-06!GO:0003924;GTPase activity;1.6068060911688e-06!GO:0006606;protein import into nucleus;1.67067950315085e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.8328721195897e-06!GO:0007010;cytoskeleton organization and biogenesis;2.05559962495304e-06!GO:0003899;DNA-directed RNA polymerase activity;2.09571814637837e-06!GO:0016859;cis-trans isomerase activity;2.10539192529252e-06!GO:0051325;interphase;2.31472545524217e-06!GO:0043623;cellular protein complex assembly;2.46692684382035e-06!GO:0004298;threonine endopeptidase activity;2.53288930284063e-06!GO:0016881;acid-amino acid ligase activity;3.18032844687259e-06!GO:0000314;organellar small ribosomal subunit;3.28784589038451e-06!GO:0005763;mitochondrial small ribosomal subunit;3.28784589038451e-06!GO:0007051;spindle organization and biogenesis;3.93919898590965e-06!GO:0005768;endosome;4.1633211844297e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.71798291022144e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.90843647233477e-06!GO:0016568;chromatin modification;5.72756634630749e-06!GO:0008094;DNA-dependent ATPase activity;5.85705355917474e-06!GO:0048519;negative regulation of biological process;5.9905243559872e-06!GO:0006613;cotranslational protein targeting to membrane;6.16004048074004e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.55550993440549e-06!GO:0005657;replication fork;7.0291829404184e-06!GO:0045454;cell redox homeostasis;9.06538726772924e-06!GO:0003724;RNA helicase activity;9.11153692994662e-06!GO:0044431;Golgi apparatus part;9.14531879513835e-06!GO:0008654;phospholipid biosynthetic process;1.19184007835419e-05!GO:0000075;cell cycle checkpoint;1.226170879249e-05!GO:0016787;hydrolase activity;1.36442805927873e-05!GO:0043069;negative regulation of programmed cell death;1.36671778750134e-05!GO:0043066;negative regulation of apoptosis;1.54442552942842e-05!GO:0042981;regulation of apoptosis;1.7656280410644e-05!GO:0043021;ribonucleoprotein binding;1.79628047690044e-05!GO:0031324;negative regulation of cellular metabolic process;1.90516407073064e-05!GO:0045786;negative regulation of progression through cell cycle;2.11647763022254e-05!GO:0044440;endosomal part;2.41790117854992e-05!GO:0010008;endosome membrane;2.41790117854992e-05!GO:0043067;regulation of programmed cell death;2.43340177096808e-05!GO:0008033;tRNA processing;2.44364636954039e-05!GO:0032446;protein modification by small protein conjugation;2.5822355052785e-05!GO:0031968;organelle outer membrane;2.73841031261722e-05!GO:0019867;outer membrane;3.08752185050671e-05!GO:0006793;phosphorus metabolic process;3.08752185050671e-05!GO:0006796;phosphate metabolic process;3.08752185050671e-05!GO:0016126;sterol biosynthetic process;3.1925618034054e-05!GO:0006916;anti-apoptosis;3.2909001606612e-05!GO:0005048;signal sequence binding;3.38046586765325e-05!GO:0030867;rough endoplasmic reticulum membrane;3.83940124486019e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.84443559485767e-05!GO:0044452;nucleolar part;3.84911452567602e-05!GO:0005798;Golgi-associated vesicle;3.85510210921944e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.88713718906325e-05!GO:0031252;leading edge;3.93426607304817e-05!GO:0016567;protein ubiquitination;3.98818579637002e-05!GO:0008168;methyltransferase activity;4.00059562102204e-05!GO:0016564;transcription repressor activity;4.00905706048872e-05!GO:0000151;ubiquitin ligase complex;4.09225928789007e-05!GO:0005770;late endosome;4.14696416896876e-05!GO:0050789;regulation of biological process;4.24836450277572e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.72197397744753e-05!GO:0003713;transcription coactivator activity;6.06374330409517e-05!GO:0008092;cytoskeletal protein binding;6.16685446903173e-05!GO:0051427;hormone receptor binding;6.27078923200778e-05!GO:0016310;phosphorylation;7.22856036100164e-05!GO:0006626;protein targeting to mitochondrion;7.27319712679094e-05!GO:0030029;actin filament-based process;8.23296270100875e-05!GO:0005741;mitochondrial outer membrane;9.10133329604186e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.21427053640321e-05!GO:0009892;negative regulation of metabolic process;9.51936700508467e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;9.94426408529205e-05!GO:0003714;transcription corepressor activity;0.000105225269065305!GO:0000786;nucleosome;0.000106542810328386!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000109891645004575!GO:0043681;protein import into mitochondrion;0.00011404237994761!GO:0000139;Golgi membrane;0.000119609140070647!GO:0009165;nucleotide biosynthetic process;0.000123156832918917!GO:0051052;regulation of DNA metabolic process;0.000125444043522461!GO:0035257;nuclear hormone receptor binding;0.000135765120179125!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00015334879132343!GO:0019899;enzyme binding;0.000156514396911492!GO:0016363;nuclear matrix;0.000161574309746036!GO:0003690;double-stranded DNA binding;0.000209829824918573!GO:0006414;translational elongation;0.000209829824918573!GO:0016023;cytoplasmic membrane-bound vesicle;0.000229459582975987!GO:0016563;transcription activator activity;0.000229459582975987!GO:0006302;double-strand break repair;0.000231827337407763!GO:0016481;negative regulation of transcription;0.00023465735853369!GO:0006612;protein targeting to membrane;0.000237282296064859!GO:0031988;membrane-bound vesicle;0.000244314931197591!GO:0033116;ER-Golgi intermediate compartment membrane;0.000250953736379437!GO:0019843;rRNA binding;0.000255984309573042!GO:0008610;lipid biosynthetic process;0.00027753508850945!GO:0006383;transcription from RNA polymerase III promoter;0.000293844124205285!GO:0003729;mRNA binding;0.00030035295273488!GO:0005525;GTP binding;0.000301042325730777!GO:0004576;oligosaccharyl transferase activity;0.000303966580026866!GO:0030880;RNA polymerase complex;0.00031453313583204!GO:0046474;glycerophospholipid biosynthetic process;0.000320247596134362!GO:0005791;rough endoplasmic reticulum;0.000323140498121806!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000330134546308145!GO:0008250;oligosaccharyl transferase complex;0.000332243555639528!GO:0006695;cholesterol biosynthetic process;0.000339341798352576!GO:0008186;RNA-dependent ATPase activity;0.000341277904025172!GO:0030133;transport vesicle;0.000345847127634685!GO:0051168;nuclear export;0.000345847127634685!GO:0050662;coenzyme binding;0.000347037271218455!GO:0000059;protein import into nucleus, docking;0.000348965579555493!GO:0007088;regulation of mitosis;0.000353800477902689!GO:0000776;kinetochore;0.000380400138320926!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000395027931449978!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000479745284316135!GO:0051789;response to protein stimulus;0.000495207242681943!GO:0006986;response to unfolded protein;0.000495207242681943!GO:0003678;DNA helicase activity;0.0005069002064673!GO:0005885;Arp2/3 protein complex;0.0005069002064673!GO:0005769;early endosome;0.0005069002064673!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000532452228417587!GO:0046483;heterocycle metabolic process;0.000558389602493028!GO:0006839;mitochondrial transport;0.000579129628082276!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000615882782992574!GO:0003684;damaged DNA binding;0.000618653853236639!GO:0006310;DNA recombination;0.000681332189339422!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000681356849352831!GO:0031982;vesicle;0.000730109000825673!GO:0019222;regulation of metabolic process;0.000761795300499043!GO:0051920;peroxiredoxin activity;0.000761795300499043!GO:0031410;cytoplasmic vesicle;0.000774744115735647!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000780344624059362!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000780344624059362!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000780344624059362!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000784537270399459!GO:0000428;DNA-directed RNA polymerase complex;0.000784537270399459!GO:0004527;exonuclease activity;0.000796490826117077!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000812206780444918!GO:0030663;COPI coated vesicle membrane;0.000823620789394134!GO:0030126;COPI vesicle coat;0.000823620789394134!GO:0007006;mitochondrial membrane organization and biogenesis;0.000842866728117696!GO:0019752;carboxylic acid metabolic process;0.000858354189991315!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000860541999810526!GO:0006082;organic acid metabolic process;0.000883771731635042!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000886837922738735!GO:0005684;U2-dependent spliceosome;0.000913806077782399!GO:0004004;ATP-dependent RNA helicase activity;0.000945669647034311!GO:0051287;NAD binding;0.000945669647034311!GO:0008361;regulation of cell size;0.000982348312306585!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000982348312306585!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00100479954265366!GO:0051540;metal cluster binding;0.00100534550122405!GO:0051536;iron-sulfur cluster binding;0.00100534550122405!GO:0031072;heat shock protein binding;0.00101578983998753!GO:0018196;peptidyl-asparagine modification;0.00102090155472026!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00102090155472026!GO:0007052;mitotic spindle organization and biogenesis;0.00106051925360602!GO:0016049;cell growth;0.00107683334790936!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00118409936565139!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00118409936565139!GO:0006275;regulation of DNA replication;0.00124840144302804!GO:0051252;regulation of RNA metabolic process;0.00125595424017987!GO:0048500;signal recognition particle;0.00129067114635625!GO:0007093;mitotic cell cycle checkpoint;0.00129119231831613!GO:0005905;coated pit;0.00133886261134699!GO:0044262;cellular carbohydrate metabolic process;0.00142799595614735!GO:0051539;4 iron, 4 sulfur cluster binding;0.00144439365524201!GO:0032561;guanyl ribonucleotide binding;0.00152599835211074!GO:0019001;guanyl nucleotide binding;0.00152599835211074!GO:0043284;biopolymer biosynthetic process;0.00154485370116031!GO:0001558;regulation of cell growth;0.00172776302225991!GO:0000049;tRNA binding;0.0017780198071574!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0018078365259887!GO:0015002;heme-copper terminal oxidase activity;0.0018078365259887!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0018078365259887!GO:0004129;cytochrome-c oxidase activity;0.0018078365259887!GO:0006118;electron transport;0.00191700044795085!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00192382714626128!GO:0015631;tubulin binding;0.00193245362738265!GO:0046489;phosphoinositide biosynthetic process;0.00207588578915783!GO:0006402;mRNA catabolic process;0.00208681256873485!GO:0030137;COPI-coated vesicle;0.0021727865039466!GO:0042802;identical protein binding;0.0021727865039466!GO:0007059;chromosome segregation;0.00219238323751183!GO:0008312;7S RNA binding;0.00229676714490052!GO:0006950;response to stress;0.00236199395327775!GO:0008139;nuclear localization sequence binding;0.00239978900124046!GO:0048037;cofactor binding;0.00267949259957128!GO:0009112;nucleobase metabolic process;0.00280403721661551!GO:0003682;chromatin binding;0.0028467917013029!GO:0005773;vacuole;0.0028980395158066!GO:0008180;signalosome;0.00293960858104542!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0030612518045027!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00312091155250039!GO:0006891;intra-Golgi vesicle-mediated transport;0.00312728033957756!GO:0009116;nucleoside metabolic process;0.0031631415147538!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0031631415147538!GO:0006740;NADPH regeneration;0.0031631415147538!GO:0006098;pentose-phosphate shunt;0.0031631415147538!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00321569790522278!GO:0045047;protein targeting to ER;0.00321569790522278!GO:0043488;regulation of mRNA stability;0.00333864444745545!GO:0043487;regulation of RNA stability;0.00333864444745545!GO:0046467;membrane lipid biosynthetic process;0.00333864444745545!GO:0035258;steroid hormone receptor binding;0.00352427553548224!GO:0030658;transport vesicle membrane;0.00362749467779306!GO:0051087;chaperone binding;0.00362749467779306!GO:0005874;microtubule;0.0036570907353499!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00368944667159617!GO:0030132;clathrin coat of coated pit;0.0038004294717437!GO:0006595;polyamine metabolic process;0.0038023515993879!GO:0032508;DNA duplex unwinding;0.00408022352426465!GO:0032392;DNA geometric change;0.00408022352426465!GO:0031124;mRNA 3'-end processing;0.0043907170219752!GO:0016272;prefoldin complex;0.00443008997647565!GO:0006352;transcription initiation;0.00446514506664699!GO:0006979;response to oxidative stress;0.00457888815596064!GO:0000082;G1/S transition of mitotic cell cycle;0.00484450711557937!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00487299335469982!GO:0016044;membrane organization and biogenesis;0.00515089606309981!GO:0030176;integral to endoplasmic reticulum membrane;0.00536047339865526!GO:0004518;nuclease activity;0.00558443248478607!GO:0030134;ER to Golgi transport vesicle;0.00563587030227854!GO:0005758;mitochondrial intermembrane space;0.00577401924296578!GO:0030521;androgen receptor signaling pathway;0.0058540839168448!GO:0006401;RNA catabolic process;0.00597291678507591!GO:0048144;fibroblast proliferation;0.00610815885130182!GO:0048145;regulation of fibroblast proliferation;0.00610815885130182!GO:0031970;organelle envelope lumen;0.00630888426066435!GO:0006268;DNA unwinding during replication;0.00636094930434291!GO:0005637;nuclear inner membrane;0.00640256281714731!GO:0048471;perinuclear region of cytoplasm;0.00653996323535407!GO:0051128;regulation of cellular component organization and biogenesis;0.00659252804968293!GO:0006144;purine base metabolic process;0.00659768954622261!GO:0006778;porphyrin metabolic process;0.00659768954622261!GO:0033013;tetrapyrrole metabolic process;0.00659768954622261!GO:0048146;positive regulation of fibroblast proliferation;0.00681234409688097!GO:0030127;COPII vesicle coat;0.00688833269498972!GO:0012507;ER to Golgi transport vesicle membrane;0.00688833269498972!GO:0016251;general RNA polymerase II transcription factor activity;0.00690111828742065!GO:0016408;C-acyltransferase activity;0.00734031491384055!GO:0030118;clathrin coat;0.00743987835238492!GO:0043022;ribosome binding;0.00743987835238492!GO:0000339;RNA cap binding;0.00766236500901683!GO:0051101;regulation of DNA binding;0.00770769662598293!GO:0016860;intramolecular oxidoreductase activity;0.00789115727487709!GO:0001726;ruffle;0.0079556542507814!GO:0007050;cell cycle arrest;0.00796036563025062!GO:0004003;ATP-dependent DNA helicase activity;0.00831961305517725!GO:0003746;translation elongation factor activity;0.00840528399848709!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00852143449137154!GO:0007346;regulation of progression through mitotic cell cycle;0.00853502846475128!GO:0017166;vinculin binding;0.00866887801704345!GO:0005876;spindle microtubule;0.00876897030076981!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00878349783209332!GO:0022890;inorganic cation transmembrane transporter activity;0.00885060869258626!GO:0000323;lytic vacuole;0.00885060869258626!GO:0005764;lysosome;0.00885060869258626!GO:0006520;amino acid metabolic process;0.00897566799592316!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00912554861510012!GO:0005869;dynactin complex;0.00919523510194271!GO:0003711;transcription elongation regulator activity;0.00928719022610986!GO:0005832;chaperonin-containing T-complex;0.00929570888555951!GO:0015992;proton transport;0.00939488865819016!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00977281060553257!GO:0006733;oxidoreduction coenzyme metabolic process;0.00984794596563742!GO:0031902;late endosome membrane;0.0099158394881594!GO:0006611;protein export from nucleus;0.00993145973309449!GO:0006818;hydrogen transport;0.00996465189215341!GO:0004177;aminopeptidase activity;0.010348007541884!GO:0030660;Golgi-associated vesicle membrane;0.010348007541884!GO:0016197;endosome transport;0.0104042681573553!GO:0065009;regulation of a molecular function;0.010660218633015!GO:0006220;pyrimidine nucleotide metabolic process;0.0106820353381225!GO:0009303;rRNA transcription;0.0107940896466165!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0108396780324227!GO:0015399;primary active transmembrane transporter activity;0.0108396780324227!GO:0048522;positive regulation of cellular process;0.0109040710194877!GO:0009451;RNA modification;0.0109133976199308!GO:0006007;glucose catabolic process;0.0109133976199308!GO:0000178;exosome (RNase complex);0.0109418821287568!GO:0003756;protein disulfide isomerase activity;0.0112290635719419!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0112290635719419!GO:0031625;ubiquitin protein ligase binding;0.0113528387492775!GO:0030027;lamellipodium;0.0114316763873886!GO:0007017;microtubule-based process;0.0114514257094012!GO:0006405;RNA export from nucleus;0.0114918886703574!GO:0033673;negative regulation of kinase activity;0.0116547124966785!GO:0006469;negative regulation of protein kinase activity;0.0116547124966785!GO:0030041;actin filament polymerization;0.0117071217311072!GO:0000922;spindle pole;0.0118860919288916!GO:0042770;DNA damage response, signal transduction;0.012127304247359!GO:0000228;nuclear chromosome;0.0124170305156434!GO:0006739;NADP metabolic process;0.0126401388768809!GO:0000910;cytokinesis;0.0127442812960636!GO:0004674;protein serine/threonine kinase activity;0.0128161602587295!GO:0043596;nuclear replication fork;0.0135136541170977!GO:0015036;disulfide oxidoreductase activity;0.013590055032979!GO:0016407;acetyltransferase activity;0.0144478335010842!GO:0048487;beta-tubulin binding;0.0146632209089497!GO:0006289;nucleotide-excision repair;0.0146731551071836!GO:0051348;negative regulation of transferase activity;0.0146731551071836!GO:0007243;protein kinase cascade;0.0147429574108076!GO:0050681;androgen receptor binding;0.0153141439708156!GO:0032984;macromolecular complex disassembly;0.0156966897347633!GO:0006650;glycerophospholipid metabolic process;0.0156966897347633!GO:0042158;lipoprotein biosynthetic process;0.0159179483823673!GO:0031570;DNA integrity checkpoint;0.0161538335107786!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0162418035806119!GO:0008629;induction of apoptosis by intracellular signals;0.0162999639940305!GO:0006779;porphyrin biosynthetic process;0.0162999639940305!GO:0033014;tetrapyrrole biosynthetic process;0.0162999639940305!GO:0065007;biological regulation;0.0163239762030748!GO:0003779;actin binding;0.0163823268421282!GO:0031123;RNA 3'-end processing;0.016600791769092!GO:0005862;muscle thin filament tropomyosin;0.017081047842068!GO:0051098;regulation of binding;0.0171120198245957!GO:0000792;heterochromatin;0.0172046418397541!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0174877077365194!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0175333754415511!GO:0000287;magnesium ion binding;0.0176595632045866!GO:0009124;nucleoside monophosphate biosynthetic process;0.0183754565282581!GO:0009123;nucleoside monophosphate metabolic process;0.0183754565282581!GO:0005669;transcription factor TFIID complex;0.0184668179751785!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0185465644939567!GO:0006497;protein amino acid lipidation;0.0191701214612132!GO:0006378;mRNA polyadenylation;0.0194054839843459!GO:0006506;GPI anchor biosynthetic process;0.0196946202896449!GO:0046112;nucleobase biosynthetic process;0.0201426124216309!GO:0030119;AP-type membrane coat adaptor complex;0.0202042499139328!GO:0008408;3'-5' exonuclease activity;0.0202828582399636!GO:0008022;protein C-terminus binding;0.020689839581559!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0207107597276848!GO:0042168;heme metabolic process;0.0208674415806385!GO:0007021;tubulin folding;0.0211686250836523!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0212684430965667!GO:0015629;actin cytoskeleton;0.0215682906566024!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0217978485668417!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0220738622595163!GO:0016584;nucleosome positioning;0.0221770502154176!GO:0030508;thiol-disulfide exchange intermediate activity;0.0221770502154176!GO:0040029;regulation of gene expression, epigenetic;0.0222219542022396!GO:0004532;exoribonuclease activity;0.0222985896714347!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0222985896714347!GO:0001725;stress fiber;0.0224886565131045!GO:0032432;actin filament bundle;0.0224886565131045!GO:0006541;glutamine metabolic process;0.0226501117571087!GO:0032259;methylation;0.0226501117571087!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0227680610529775!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0227680610529775!GO:0006505;GPI anchor metabolic process;0.0228088970508182!GO:0006509;membrane protein ectodomain proteolysis;0.0229455106364889!GO:0033619;membrane protein proteolysis;0.0229455106364889!GO:0030384;phosphoinositide metabolic process;0.0231788577472862!GO:0031529;ruffle organization and biogenesis;0.0231788577472862!GO:0008299;isoprenoid biosynthetic process;0.0232967244196453!GO:0031901;early endosome membrane;0.0237083491304741!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.024068963343359!GO:0005856;cytoskeleton;0.0244274262522819!GO:0008154;actin polymerization and/or depolymerization;0.0245066068306528!GO:0000096;sulfur amino acid metabolic process;0.0245122046620427!GO:0030518;steroid hormone receptor signaling pathway;0.0245573548180233!GO:0030125;clathrin vesicle coat;0.024669768617431!GO:0030665;clathrin coated vesicle membrane;0.024669768617431!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0250052972619973!GO:0006284;base-excision repair;0.0255683904582054!GO:0006376;mRNA splice site selection;0.0255683904582054!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0255683904582054!GO:0031323;regulation of cellular metabolic process;0.0256876753919563!GO:0016125;sterol metabolic process;0.0256876753919563!GO:0043241;protein complex disassembly;0.0260458798169959!GO:0043414;biopolymer methylation;0.0260578376676258!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0263308461147935!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.02640339380739!GO:0000084;S phase of mitotic cell cycle;0.02640339380739!GO:0008632;apoptotic program;0.0264497577261226!GO:0046128;purine ribonucleoside metabolic process;0.0271549816699465!GO:0042278;purine nucleoside metabolic process;0.0271549816699465!GO:0043624;cellular protein complex disassembly;0.0275566776575441!GO:0030145;manganese ion binding;0.0276046860524397!GO:0007034;vacuolar transport;0.027776727905534!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0279525138397912!GO:0004448;isocitrate dehydrogenase activity;0.0279650011571918!GO:0006769;nicotinamide metabolic process;0.0282679701208307!GO:0031371;ubiquitin conjugating enzyme complex;0.0282985201777832!GO:0000209;protein polyubiquitination;0.028342281721938!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0284909255098935!GO:0010257;NADH dehydrogenase complex assembly;0.0284909255098935!GO:0033108;mitochondrial respiratory chain complex assembly;0.0284909255098935!GO:0006892;post-Golgi vesicle-mediated transport;0.0285239450527371!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0285239450527371!GO:0045039;protein import into mitochondrial inner membrane;0.0285239450527371!GO:0045892;negative regulation of transcription, DNA-dependent;0.0285239450527371!GO:0007040;lysosome organization and biogenesis;0.028850161761933!GO:0035267;NuA4 histone acetyltransferase complex;0.0292100211829102!GO:0009081;branched chain family amino acid metabolic process;0.0292100211829102!GO:0040008;regulation of growth;0.02959119180399!GO:0043601;nuclear replisome;0.0296286842747149!GO:0030894;replisome;0.0296286842747149!GO:0032200;telomere organization and biogenesis;0.0299681942683512!GO:0000723;telomere maintenance;0.0299681942683512!GO:0043189;H4/H2A histone acetyltransferase complex;0.03018935409917!GO:0006350;transcription;0.0308839542580938!GO:0035035;histone acetyltransferase binding;0.0311176226045515!GO:0030032;lamellipodium biogenesis;0.0312766900444608!GO:0051320;S phase;0.0323511170019262!GO:0030911;TPR domain binding;0.032767181070478!GO:0030131;clathrin adaptor complex;0.0328361997747313!GO:0009161;ribonucleoside monophosphate metabolic process;0.0329867536381016!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0329867536381016!GO:0050178;phenylpyruvate tautomerase activity;0.0332478357446158!GO:0008538;proteasome activator activity;0.0332478357446158!GO:0000152;nuclear ubiquitin ligase complex;0.0337503721496239!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0337845771687203!GO:0045045;secretory pathway;0.0339213213705691!GO:0005100;Rho GTPase activator activity;0.0344930618328395!GO:0042393;histone binding;0.0347114390831171!GO:0008320;protein transmembrane transporter activity;0.0350690586874995!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0353751981881662!GO:0005784;translocon complex;0.035398544410184!GO:0000725;recombinational repair;0.0356535491531255!GO:0000724;double-strand break repair via homologous recombination;0.0356535491531255!GO:0006720;isoprenoid metabolic process;0.035866002157182!GO:0051537;2 iron, 2 sulfur cluster binding;0.0363987633437186!GO:0008143;poly(A) binding;0.0364146729244603!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0364682750449631!GO:0033043;regulation of organelle organization and biogenesis;0.0364682750449631!GO:0033559;unsaturated fatty acid metabolic process;0.0364682750449631!GO:0006636;unsaturated fatty acid biosynthetic process;0.0364682750449631!GO:0006270;DNA replication initiation;0.0369564041519196!GO:0000077;DNA damage checkpoint;0.0382994964889005!GO:0030031;cell projection biogenesis;0.0404016451676284!GO:0009225;nucleotide-sugar metabolic process;0.0409280257943916!GO:0030833;regulation of actin filament polymerization;0.0411461598821794!GO:0005663;DNA replication factor C complex;0.0413586873273528!GO:0005732;small nucleolar ribonucleoprotein complex;0.0416101708970082!GO:0007033;vacuole organization and biogenesis;0.0416101708970082!GO:0031543;peptidyl-proline dioxygenase activity;0.0417761766201353!GO:0008047;enzyme activator activity;0.0417761766201353!GO:0019798;procollagen-proline dioxygenase activity;0.041910630616501!GO:0030496;midbody;0.042044364518189!GO:0006400;tRNA modification;0.0423514417989401!GO:0022415;viral reproductive process;0.0424309969408573!GO:0019206;nucleoside kinase activity;0.0424800003952328!GO:0000070;mitotic sister chromatid segregation;0.0452064399503769!GO:0006607;NLS-bearing substrate import into nucleus;0.0459928424670182!GO:0042769;DNA damage response, detection of DNA damage;0.04683692147256!GO:0030433;ER-associated protein catabolic process;0.046908578087548!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.046908578087548!GO:0009119;ribonucleoside metabolic process;0.046961853724608!GO:0008097;5S rRNA binding;0.046961853724608!GO:0008017;microtubule binding;0.0471792701152946!GO:0006596;polyamine biosynthetic process;0.0471792701152946!GO:0045941;positive regulation of transcription;0.0475524862341939!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0480562520706563!GO:0006730;one-carbon compound metabolic process;0.0489068193331592!GO:0004523;ribonuclease H activity;0.0489068193331592!GO:0005774;vacuolar membrane;0.0490819085819641!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0491632755768472!GO:0000819;sister chromatid segregation;0.0492840033713777!GO:0006767;water-soluble vitamin metabolic process;0.0496596363655368
|sample_id=11451
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skeletal muscle
|top_motifs=GFI1:1.31569145136;NKX2-2,8:1.13191857859;PBX1:1.11370941463;GFI1B:1.05331206875;NR3C1:1.04913048918;RXR{A,B,G}:1.01763179142;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.963016967466;HOX{A5,B5}:0.957689982476;YY1:0.9473296229;E2F1..5:0.920682446274;NKX3-1:0.913789868499;GZF1:0.805678952147;SRF:0.803147674727;UFEwm:0.798068631266;HES1:0.749504351894;ELK1,4_GABP{A,B1}:0.726185236695;PAX4:0.725416868533;PDX1:0.703910153051;TAL1_TCF{3,4,12}:0.67877983275;ALX4:0.637408242971;EN1,2:0.626830147729;ZNF143:0.621888268053;NFY{A,B,C}:0.612845729786;TFAP4:0.59129000876;POU3F1..4:0.566670557266;HOX{A4,D4}:0.554979435061;KLF4:0.55331632881;IKZF1:0.541671078869;TLX1..3_NFIC{dimer}:0.540952779023;AHR_ARNT_ARNT2:0.52026638217;ZNF238:0.517531924209;STAT1,3:0.510964255334;TEAD1:0.510062352541;NRF1:0.501185347237;EBF1:0.500711365715;NFE2L1:0.486725078945;FOXP1:0.482170290354;NR1H4:0.470886422555;HOXA9_MEIS1:0.464776481566;NANOG{mouse}:0.456722795881;ESRRA:0.426128369787;ATF6:0.415081137623;ESR1:0.410184112998;SOX17:0.402092244092;NKX2-1,4:0.389635635706;TFDP1:0.376552513256;TBP:0.369327718623;MZF1:0.360839266545;HSF1,2:0.347410716678;AIRE:0.314476062586;TOPORS:0.311470476222;RXRA_VDR{dimer}:0.306075091855;FOXL1:0.299367902508;POU6F1:0.296366276541;AR:0.287958047102;EVI1:0.281007929941;GLI1..3:0.266163137572;MYBL2:0.265857242161;STAT5{A,B}:0.245312576299;FOXM1:0.24049107112;ZIC1..3:0.227081433678;PAX5:0.226560935151;MEF2{A,B,C,D}:0.225435206449;POU2F1..3:0.220770849829;PAX8:0.21644547318;FOXD3:0.20697645337;NKX3-2:0.197156801226;POU1F1:0.185211645906;MYB:0.177271454718;SPZ1:0.164069628197;NFIX:0.160087043285;CDC5L:0.153887283853;XCPE1{core}:0.150162805808;NR5A1,2:0.147649288361;PITX1..3:0.144121821191;HNF4A_NR2F1,2:0.142428251177;GTF2A1,2:0.137149674945;STAT2,4,6:0.134834203854;TFCP2:0.112850835779;BACH2:0.110051884378;PAX3,7:0.101079723418;T:0.0929110365988;TEF:0.0879753670503;TBX4,5:0.0861608027679;XBP1:0.0861184074431;LEF1_TCF7_TCF7L1,2:0.0816930819338;GTF2I:0.0816454169332;ALX1:0.0745520442376;ZBTB6:0.0602956401353;PRRX1,2:0.0488072889503;LHX3,4:0.0468987040072;TP53:0.0368372338683;PAX1,9:0.0318642482144;HIF1A:0.0317083803782;ZBTB16:0.0177021358046;DBP:0.0172499841587;ONECUT1,2:0.00859794441482;bHLH_family:0.00699873886467;TFAP2{A,C}:-0.0100051028313;GATA4:-0.0112129016122;ZNF148:-0.0150847701557;EGR1..3:-0.02357171375;ARID5B:-0.0243700464986;CREB1:-0.0352711396572;NR6A1:-0.0384075970276;HNF1A:-0.0395379327448;FOS_FOS{B,L1}_JUN{B,D}:-0.0399713574042;ELF1,2,4:-0.0404593560697;HIC1:-0.0422813248734;NFATC1..3:-0.0452165940824;HLF:-0.0494837637547;NHLH1,2:-0.074952597227;BREu{core}:-0.0796922494975;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0855750546613;GCM1,2:-0.0858812356022;MTF1:-0.0991979163943;ZNF384:-0.107875089513;RBPJ:-0.115121019493;NKX6-1,2:-0.116182461418;NFE2L2:-0.119648512184;PRDM1:-0.133613871462;RFX1:-0.135577351664;SOX5:-0.153512428675;MAZ:-0.159926360587;DMAP1_NCOR{1,2}_SMARC:-0.167983932751;ZFP161:-0.168781237559;PATZ1:-0.177192868978;CRX:-0.198610453009;PPARG:-0.199945973877;ADNP_IRX_SIX_ZHX:-0.208440483888;SP1:-0.214186939543;FOSL2:-0.240732848811;RUNX1..3:-0.242993460248;CEBPA,B_DDIT3:-0.247595975066;ZNF423:-0.257335273724;NFE2:-0.273181358651;NKX2-3_NKX2-5:-0.285522995421;TGIF1:-0.297091904646;MAFB:-0.299385037793;MYOD1:-0.307751916165;SOX{8,9,10}:-0.308947401987;NFKB1_REL_RELA:-0.309259582971;CDX1,2,4:-0.310370007242;IKZF2:-0.315885201586;FOXP3:-0.329573752036;SMAD1..7,9:-0.35850502557;CUX2:-0.391121525237;REST:-0.391203311788;MYFfamily:-0.391980185687;PAX6:-0.411559228682;RFX2..5_RFXANK_RFXAP:-0.425783575496;SPI1:-0.439918534287;HAND1,2:-0.460389701171;RREB1:-0.470721086439;MTE{core}:-0.478393472495;JUN:-0.478544191072;TFAP2B:-0.486515649215;NANOG:-0.490557827887;PAX2:-0.506389812346;ATF5_CREB3:-0.529564772376;IRF1,2:-0.567403350687;EP300:-0.567625852103;OCT4_SOX2{dimer}:-0.571062554873;ATF2:-0.573309648371;ETS1,2:-0.578670998733;MED-1{core}:-0.584299105018;FOXO1,3,4:-0.600635104108;SPIB:-0.610295197743;FOX{I1,J2}:-0.62252737251;ATF4:-0.625582583024;SOX2:-0.670376108174;BPTF:-0.683496391165;NFIL3:-0.684550543444;SNAI1..3:-0.703150295275;RORA:-0.733230599878;HMX1:-0.734660418035;IRF7:-0.735912402212;HMGA1,2:-0.736370303716;GATA6:-0.744764411616;POU5F1:-0.778740592237;FOXN1:-0.825787343635;SREBF1,2:-0.844085268649;VSX1,2:-0.847166516155;TLX2:-0.851480387149;FOXA2:-0.88848083746;FOXQ1:-0.893631810248;FOX{F1,F2,J1}:-0.929998549997;LMO2:-0.973736119987;ZEB1:-0.985249226555;FOX{D1,D2}:-1.01215878215;HOX{A6,A7,B6,B7}:-1.08382793595;HBP1_HMGB_SSRP1_UBTF:-1.12717848136
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11451-119A2;search_select_hide=table117:FF:11451-119A2
}}
}}

Latest revision as of 18:01, 4 June 2020

Name:Skeletal Muscle Cells, donor4
Species:Human (Homo sapiens)
Library ID:CNhs12053
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stagefetus
sexunknown
agefetal
cell typeskeletal muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number487
catalog numberSC3505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005833
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12053 CAGE DRX008455 DRR009327
Accession ID Hg19

Library idBAMCTSS
CNhs12053 DRZ000752 DRZ002137
Accession ID Hg38

Library idBAMCTSS
CNhs12053 DRZ012102 DRZ013487
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0729
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.419
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0273
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.233
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0622
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.558
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.161
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0209
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.133
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.165
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.533
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00451
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.402
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.117
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0663
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.208
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.228
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.567
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.378
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.0622
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.248
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.627
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12053

Jaspar motifP-value
MA0002.20.018
MA0003.10.846
MA0004.10.793
MA0006.10.956
MA0007.10.0294
MA0009.10.125
MA0014.10.695
MA0017.10.699
MA0018.20.0155
MA0019.10.599
MA0024.11.22997e-7
MA0025.10.00563
MA0027.10.816
MA0028.11.01647e-5
MA0029.10.831
MA0030.11.08862e-4
MA0031.16.52007e-5
MA0035.20.0293
MA0038.10.1
MA0039.20.553
MA0040.10.122
MA0041.10.134
MA0042.10.138
MA0043.10.0253
MA0046.10.0271
MA0047.20.0199
MA0048.10.00109
MA0050.14.80982e-4
MA0051.10.00206
MA0052.10.227
MA0055.15.73443e-4
MA0057.10.906
MA0058.10.949
MA0059.10.213
MA0060.11.47631e-4
MA0061.10.0153
MA0062.20.141
MA0065.20.783
MA0066.10.371
MA0067.10.00467
MA0068.10.126
MA0069.10.851
MA0070.10.403
MA0071.10.422
MA0072.10.613
MA0073.10.704
MA0074.10.805
MA0076.15.93171e-5
MA0077.10.151
MA0078.10.35
MA0079.20.164
MA0080.28.38177e-14
MA0081.10.0364
MA0083.11.27739e-4
MA0084.10.648
MA0087.10.737
MA0088.11.06372e-5
MA0090.10.295
MA0091.10.167
MA0092.10.441
MA0093.10.783
MA0099.20.00382
MA0100.10.343
MA0101.10.0167
MA0102.20.0223
MA0103.15.7113e-5
MA0104.20.021
MA0105.10.566
MA0106.10.406
MA0107.17.13636e-4
MA0108.20.031
MA0111.10.702
MA0112.20.45
MA0113.10.36
MA0114.10.975
MA0115.10.782
MA0116.10.682
MA0117.10.372
MA0119.10.243
MA0122.10.546
MA0124.10.656
MA0125.10.226
MA0131.10.119
MA0135.10.282
MA0136.14.18338e-10
MA0137.20.746
MA0138.20.616
MA0139.10.888
MA0140.10.315
MA0141.10.202
MA0142.10.0698
MA0143.10.775
MA0144.10.532
MA0145.10.583
MA0146.10.283
MA0147.10.0116
MA0148.10.0298
MA0149.10.657
MA0150.10.0302
MA0152.10.0252
MA0153.10.977
MA0154.10.398
MA0155.10.637
MA0156.18.61899e-6
MA0157.10.0027
MA0159.10.42
MA0160.10.13
MA0162.10.517
MA0163.10.00135
MA0164.10.62
MA0258.10.438
MA0259.10.0274



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12053

Novel motifP-value
10.478
100.0686
1000.551
1010.204
1020.503
1030.92
1040.916
1050.735
1064.39056e-5
1070.932
1080.771
1090.603
110.339
1100.00706
1110.928
1120.101
1130.0578
1140.227
1150.757
1160.143
1170.275
1180.628
1190.391
120.347
1200.12
1210.71
1220.0115
1230.062
1240.366
1250.894
1260.905
1270.0713
1280.139
1290.155
130.103
1300.175
1310.522
1320.759
1330.605
1340.397
1350.0622
1360.057
1370.0696
1380.0443
1390.139
140.223
1400.138
1410.435
1420.74
1430.255
1440.869
1450.747
1460.874
1470.565
1480.533
1490.461
150.226
1500.807
1510.55
1520.273
1530.501
1540.639
1550.06
1560.214
1570.456
1580.0116
1590.071
160.606
1600.377
1610.948
1620.397
1630.722
1640.275
1650.32
1660.168
1670.335
1680.33
1690.569
170.761
180.617
190.205
20.924
200.714
210.0268
220.831
230.027
240.704
250.641
260.199
270.648
280.0963
290.124
30.942
300.933
310.406
320.01
330.402
340.697
350.344
360.521
370.871
380.404
390.516
40.0308
400.296
410.0061
420.727
430.534
440.421
450.114
460.77
470.738
480.4
490.18
50.327
500.393
510.651
520.156
530.3
540.418
550.572
560.901
570.985
580.191
590.986
60.417
600.0523
610.498
620.198
630.97
640.896
650.309
660.332
670.604
680.298
690.586
70.714
700.0448
710.251
720.232
730.577
740.739
750.405
760.713
770.973
780.905
790.131
80.271
800.0966
810.699
820.0427
830.961
840.717
850.0129
860.547
870.0463
880.917
890.89
90.897
900.64
910.239
920.584
930.769
940.849
950.196
960.295
970.854
980.281
990.00256



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12053


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)

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