FF:11455-119A6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005660 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008456;DRR009328;DRZ000753;DRZ002138;DRZ012103;DRZ013488 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000211,CL:0000255,CL:0000188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000162 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!1.82!64.78!MYOG;;chr8:25902876..25902936,-!p1@EBF2!1.79!60.17!EBF2;;chr3:12330560..12330579,+!p1@PPARG!1.64!49.12!PPARG;;chr7:19157248..19157268,-!p1@TWIST1!1.40!65.85!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.24!40.22!EBF1;;chr17:1959369..1959388,+!p2@HIC1!1.17!36.23!HIC1;;chr11:17741111..17741124,+!p1@MYOD1!1.13!12.43!MYOD1;;chr14:61116183..61116208,-!p1@SIX1!1.11!45.44!SIX1;;chr1:170632285..170632309,+!p1@PRRX1!1.11!13.51!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.09!11.21!MEOX2;;chr10:131762504..131762555,-!p1@EBF3!1.07!10.75!EBF3;;chr3:12329397..12329433,+!p2@PPARG!1.06!24.10!PPARG;;chr11:47279504..47279563,+!p1@NR1H3!1.02!21.80!NR1H3;;chr19:46801639..46801699,+!p1@HIF3A!1.02!9.36!HIF3A;;chr12:66218255..66218304,+!p3@HMGA2!1.01!25.33!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.59!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.50!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.83!HMGA2;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.50!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.13!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.96!8.14!RARB;;chr8:49833948..49833973,-!p2@SNAI2!0.95!51.42!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.66!TCF12;;chr7:15726243..15726293,-!p2@MEOX2!0.95!7.98!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.52!HOXD8;;chr1:170633262..170633285,+!p3@PRRX1!0.92!8.44!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.27!TWIST1;;chr8:128748308..128748324,+!p2@MYC!0.89!198.17!MYC;;chr6:34204921..34204939,+!p3@HMGA1!0.87!203.24!HMGA1;;chr3:12329358..12329393,+!p3@PPARG!0.87!16.58!PPARG;;chr5:137804484..137804498,+!p2@EGR1!0.86!26.56!EGR1;;chr11:113930425..113930471,+!p1@ZBTB16!0.85!8.90!ZBTB16;;chr21:47063625..47063658,+!p1@PCBP3!0.83!26.56!PCBP3;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.83!SOX11;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.37!BCL3;;chr12:54447637..54447659,+!p4@HOXC4!0.82!5.68!HOXC4;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.53!SIX2;;chr5:158527104..158527135,-!p4@EBF1!0.81!5.53!EBF1;;chr17:1958388..1958404,+!p1@HIC1!0.80!36.53!HIC1;;chr20:51588873..51588953,+!p1@TSHZ2!0.78!6.75!TSHZ2;;chr8:49833978..49833996,-!p1@SNAI2!0.77!111.75!SNAI2;;chr19:47523058..47523114,+!p1@NPAS1!0.77!4.91!NPAS1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.91!HOXC5;;chr9:4300050..4300118,-!p1@GLIS3!0.76!34.23!GLIS3;;chr5:158527139..158527161,-!p5@EBF1!0.76!4.76!EBF1;;chr1:119530493..119530572,-!p1@TBX15!0.75!4.61!TBX15;;chr8:22550982..22550999,-!p1@EGR3!0.73!13.35!EGR3;;chr9:16870659..16870675,-!p2@BNC2!0.72!5.37!BNC2;;chr6:85474299..85474324,-!p1@TBX18!0.71!7.83!TBX18;;chr4:299227..299272,-!p1@ZNF732!0.71!4.14!ZNF732;;chr2:169312600..169312606,+!p2@CERS6!0.70!6.75!CERS6;;chr7:27183291..27183324,-!p1@HOXA5!0.70!3.99!HOXA5;;chr17:41277372..41277418,-!p1@BRCA1!0.69!15.66!BRCA1;;chr9:16870710..16870763,-!p1@BNC2!0.69!7.21!BNC2;;chr11:46299199..46299233,+!p1@CREB3L1!0.68!22.41!CREB3L1;;chr10:114710244..114710257,+!p3@TCF7L2!0.67!11.05!TCF7L2;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.75!ZFPM2;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.60!CREB3L1;;chr16:1031762..1031781,+!p1@SOX8!0.67!3.68!SOX8;;chr1:40105299..40105326,-!p1@HEYL!0.67!3.68!HEYL;;chr2:121493425..121493474,+!p1@GLI2!0.64!8.29!GLI2;;chr14:61116168..61116180,-!p2@SIX1!0.64!3.99!SIX1;;chr1:170632250..170632277,+!p7@PRRX1!0.64!3.38!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.63!12.13!TWIST2;;chr17:61919985..61920012,-!p3@SMARCD2!0.63!9.06!SMARCD2;;chr6:45296048..45296082,+!p1@RUNX2!0.63!3.84!RUNX2;;chr7:27142290..27142310,-!p1@HOXA2!0.63!3.22!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.63!3.22!HOXA5;;chr12:54422217..54422239,+!p3@HOXC6!0.63!3.22!HOXC6;;chr9:16705069..16705086,-!p3@BNC2!0.63!3.22!BNC2;;chr20:30193083..30193098,+!p1@ID1!0.62!311.46!ID1;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.99!TWIST2;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.77!HIF1A;;chr17:59477233..59477263,+!p1@TBX2!0.61!11.05!TBX2;;chr15:37390374..37390422,-!p9@MEIS2!0.61!3.99!MEIS2;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.07!SIX2;;chr3:147127142..147127168,+!p1@ZIC1!0.61!3.07!ZIC1;;chr1:61547894..61547968,+!p2@NFIA!0.60!10.13!NFIA;;chr21:36260773..36260804,-!p7@RUNX1!0.60!4.30!RUNX1;;chr1:170632959..170632987,+!p4@PRRX1!0.60!3.38!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.59!17.81!HIF1A;;chr1:8934931..8934947,-!p4@ENO1!0.59!11.21!ENO1;;chr2:19558373..19558392,-!p1@OSR1!0.59!9.06!OSR1;;chr9:16728327..16728338,-!p5@BNC2!0.59!2.92!BNC2;;chr9:14083467..14083483,-!p4@NFIB!0.58!7.98!NFIB;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.22!ZNF492;;chr11:113930291..113930339,+!p2@ZBTB16!0.58!5.07!ZBTB16;;chr17:46655704..46655718,-!p2@HOXB4!0.58!4.61!HOXB4;;chr11:125034605..125034636,+!p2@PKNOX2!0.58!2.76!PKNOX2;;chr12:66218420..66218439,+!p12@HMGA2!0.58!2.76!HMGA2;;chr18:22932080..22932170,-!p1@ZNF521!0.57!13.97!ZNF521;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.07!ZNF385D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.57!2.92!GLIS1;;chr12:2986206..2986258,-!p2@FOXM1!0.56!19.65!FOXM1;;chr17:46622070..46622109,-!p1@HOXB2!0.56!6.75!HOXB2;;chr1:23696308..23696339,-!p2@ZNF436!0.56!6.45!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.56!3.07!ZNF436;;chr11:125034640..125034655,+!p1@PKNOX2!0.56!2.61!PKNOX2;;chr2:102091144..102091183,-!p2@RFX8!0.56!2.61!RFX8;;chr7:27192185..27192209,-!p1@HOXA3!0.56!2.61!HOXA3;;chr8:77593750..77593757,+!p3@ZFHX4!0.56!2.61!ZFHX4;;chr15:96873984..96873999,+!p3@NR2F2!0.55!23.18!NR2F2;;chr20:42543441..42543497,+!p1@TOX2!0.55!14.12!TOX2;;chr9:14082760..14082775,-!p6@NFIB!0.55!4.76!NFIB;;chr19:13134772..13134822,+!p2@NFIX!0.55!4.14!NFIX;;chr9:16728161..16728185,-!p4@BNC2!0.54!2.46!BNC2;;chr1:119530857..119530884,-!p4@TBX15!0.54!2.46!TBX15;;chr5:176738887..176738934,-!p1@MXD3!0.53!19.96!MXD3;;chr19:20188776..20188826,+!p1@ZNF90!0.53!7.68!ZNF90;;chr17:41622765..41622821,-!p2@ETV4!0.53!3.99!ETV4;;chr1:8926441..8926473,-!p10@ENO1!0.53!3.99!ENO1;;chr3:126076264..126076305,-!p2@KLF15!0.53!3.68!KLF15;;chr6:85473156..85473210,-!p2@TBX18!0.53!3.07!TBX18;;chr6:34204672..34204692,+!p1@HMGA1!0.52!339.40!HMGA1;;chr15:37392724..37392757,-!p1@MEIS2!0.52!13.20!MEIS2;;chr1:158979872..158979898,+!p3@IFI16!0.52!8.75!IFI16;;chr3:24536253..24536328,-!p1@THRB!0.52!5.07!THRB;;chr12:66218378..66218401,+!p6@HMGA2!0.52!3.99!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!0.52!3.22!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!0.52!2.30!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!0.52!2.30!RFX8;;chr2:119604456..119604501,-!p2@EN1!0.52!2.30!EN1;;chr12:54410948..54410992,+!p3@HOXC5!0.52!2.30!HOXC5;;chr11:65687362..65687436,+!p3@DRAP1!0.51!12.89!DRAP1;;chr21:36421535..36421610,-!p2@RUNX1!0.51!9.82!RUNX1;;chr9:73029219..73029289,-!p2@KLF9!0.51!8.29!KLF9;;chr20:50721803..50721857,-!p2@ZFP64!0.51!3.99!ZFP64;;chr19:23299814..23299844,+!p1@ZNF730!0.51!2.92!ZNF730;;chr1:158979792..158979814,+!p2@IFI16!0.50!27.32!IFI16;;chr12:3068544..3068597,+!p1@TEAD4!0.50!16.73!TEAD4;;chr2:214015111..214015179,-!p1@IKZF2!0.50!4.45!IKZF2;;chr8:128747661..128747703,+!p6@MYC!0.50!3.22!MYC;;chr17:46675420..46675465,-!p3@HOXB6!0.50!2.61!HOXB6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.50!2.15!PEG3;;chr3:25470062..25470084,+!p4@RARB!0.50!2.15!RARB;;chr11:113930401..113930422,+!p3@ZBTB16!0.50!2.15!ZBTB16;;chr11:17741254..17741282,+!p2@MYOD1!0.50!2.15!MYOD1;;chr12:66358080..66358094,+!p15@HMGA2!0.50!2.15!HMGA2;;chr12:81110684..81110700,+!p1@MYF5!0.50!2.15!MYF5;;chr12:66218836..66218888,+!p1@HMGA2!0.49!26.10!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.49!3.07!ENO1;;chr12:54447599..54447630,+!p3@HOXC4!0.49!2.76!HOXC4;;chr12:66218152..66218174,+!p10@HMGA2!0.49!2.30!HMGA2;;chr17:46622114..46622138,-!p4@HOXB2!0.48!3.53!HOXB2;;chr1:247171316..247171336,-!p3@ZNF695!0.48!3.38!ZNF695;;chr12:54402745..54402788,+!p1@HOXC8!0.48!2.00!HOXC8;;chr9:16871214..16871260,-!p11@BNC2!0.48!2.00!BNC2;;chr14:95236440..95236465,-!p1@GSC!0.48!2.00!GSC;;chr2:214014959..214015006,-!p4@IKZF2!0.48!2.00!IKZF2;;chr3:147111231..147111281,+!p3@ZIC1!0.48!2.00!ZIC1;;chr14:62162224..62162254,+!p1@HIF1A!0.47!388.67!HIF1A;;chr3:114343768..114343822,-!p1@ZBTB20!0.47!11.21!ZBTB20;;chr17:41623009..41623053,-!p4@ETV4!0.47!3.68!ETV4;;chr5:138609782..138609826,+!p5@MATR3!0.46!16.42!MATR3;;chr8:77593474..77593612,+!p1@ZFHX4!0.46!10.44!ZFHX4;;chr5:76383070..76383117,-!p3@ZBED3!0.46!4.61!ZBED3;;chr10:70320074..70320106,+!p1@TET1!0.46!4.61!TET1;;chr1:247171347..247171366,-!p2@ZNF695!0.46!4.14!ZNF695;;chr2:208030647..208030689,-!p1@KLF7!0.45!20.72!KLF7;;chr11:65686732..65686756,+!p2@DRAP1!0.45!10.28!DRAP1;;chr20:42543506..42543549,+!p2@TOX2!0.45!5.53!TOX2;;chr9:4300016..4300039,-!p2@GLIS3!0.45!3.68!GLIS3;;chr12:66218573..66218596,+!p7@HMGA2!0.45!3.07!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.45!1.84!HOXC9;;chr22:19748231..19748317,+!p1@TBX1!0.45!1.84!TBX1;;chr3:21792631..21792665,-!p3@ZNF385D!0.45!1.84!ZNF385D;;chr3:21792790..21792824,-!p4@ZNF385D!0.45!1.84!ZNF385D;;chr1:170633194..170633205,+!p18@PRRX1!0.45!1.84!PRRX1;;chr20:42295713..42295738,+!p2@MYBL2!0.44!14.28!MYBL2;;chr2:239148671..239148686,-!p1@HES6!0.44!8.44!HES6;;chr6:126240380..126240430,+!p2@NCOA7!0.44!5.83!NCOA7;;chr14:24837368..24837401,+!p1@NFATC4!0.44!5.22!NFATC4;;chr16:8962202..8962222,-!p3@CARHSP1!0.44!3.68!CARHSP1;;chr12:66218443..66218461,+!p8@HMGA2!0.44!2.46!HMGA2;;chr1:8938766..8938774,-!p2@ENO1!0.43!167.47!ENO1;;chr9:73028814..73028895,-!p1@KLF9!0.43!23.79!KLF9;;chr6:31126291..31126399,+!p1@TCF19!0.43!22.87!TCF19;;chr12:7079780..7079791,-!p2@PHB2!0.43!12.28!PHB2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.43!10.44!TAL1;;chr6:45390025..45390076,+!p2@RUNX2!0.43!5.22!RUNX2;;chr4:206390..206444,+!p1@ZNF876P!0.43!3.68!ZNF876P;;chr14:62213827..62213853,+!p6@HIF1A!0.43!2.76!HIF1A;;chr5:72743793..72743855,-!p4@FOXD1!0.43!2.15!FOXD1;;chr11:46299186..46299195,+!p3@CREB3L1!0.43!2.00!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!0.43!1.69!HOXC9;;chr5:158524625..158524669,-!p6@EBF1!0.43!1.69!EBF1;;chr7:27205136..27205164,-!p1@HOXA9!0.43!1.69!HOXA9;;chr2:24714729..24714761,+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| |expression_enrichment_score=chr1:203055129..203055147,-!p1@MYOG!1.82!64.78!MYOG;;chr8:25902876..25902936,-!p1@EBF2!1.79!60.17!EBF2;;chr3:12330560..12330579,+!p1@PPARG!1.64!49.12!PPARG;;chr7:19157248..19157268,-!p1@TWIST1!1.40!65.85!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.24!40.22!EBF1;;chr17:1959369..1959388,+!p2@HIC1!1.17!36.23!HIC1;;chr11:17741111..17741124,+!p1@MYOD1!1.13!12.43!MYOD1;;chr14:61116183..61116208,-!p1@SIX1!1.11!45.44!SIX1;;chr1:170632285..170632309,+!p1@PRRX1!1.11!13.51!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.09!11.21!MEOX2;;chr10:131762504..131762555,-!p1@EBF3!1.07!10.75!EBF3;;chr3:12329397..12329433,+!p2@PPARG!1.06!24.10!PPARG;;chr11:47279504..47279563,+!p1@NR1H3!1.02!21.80!NR1H3;;chr19:46801639..46801699,+!p1@HIF3A!1.02!9.36!HIF3A;;chr12:66218255..66218304,+!p3@HMGA2!1.01!25.33!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.59!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.50!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.83!HMGA2;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.50!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!0.97!12.13!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.96!8.14!RARB;;chr8:49833948..49833973,-!p2@SNAI2!0.95!51.42!SNAI2;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.66!TCF12;;chr7:15726243..15726293,-!p2@MEOX2!0.95!7.98!MEOX2;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.52!HOXD8;;chr1:170633262..170633285,+!p3@PRRX1!0.92!8.44!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.90!18.27!TWIST1;;chr8:128748308..128748324,+!p2@MYC!0.89!198.17!MYC;;chr6:34204921..34204939,+!p3@HMGA1!0.87!203.24!HMGA1;;chr3:12329358..12329393,+!p3@PPARG!0.87!16.58!PPARG;;chr5:137804484..137804498,+!p2@EGR1!0.86!26.56!EGR1;;chr11:113930425..113930471,+!p1@ZBTB16!0.85!8.90!ZBTB16;;chr21:47063625..47063658,+!p1@PCBP3!0.83!26.56!PCBP3;;chr2:5832508..5832524,+!p1@SOX11!0.83!5.83!SOX11;;chr19:45260775..45260838,+!p5@BCL3!0.82!7.37!BCL3;;chr12:54447637..54447659,+!p4@HOXC4!0.82!5.68!HOXC4;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.53!SIX2;;chr5:158527104..158527135,-!p4@EBF1!0.81!5.53!EBF1;;chr17:1958388..1958404,+!p1@HIC1!0.80!36.53!HIC1;;chr20:51588873..51588953,+!p1@TSHZ2!0.78!6.75!TSHZ2;;chr8:49833978..49833996,-!p1@SNAI2!0.77!111.75!SNAI2;;chr19:47523058..47523114,+!p1@NPAS1!0.77!4.91!NPAS1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.91!HOXC5;;chr9:4300050..4300118,-!p1@GLIS3!0.76!34.23!GLIS3;;chr5:158527139..158527161,-!p5@EBF1!0.76!4.76!EBF1;;chr1:119530493..119530572,-!p1@TBX15!0.75!4.61!TBX15;;chr8:22550982..22550999,-!p1@EGR3!0.73!13.35!EGR3;;chr9:16870659..16870675,-!p2@BNC2!0.72!5.37!BNC2;;chr6:85474299..85474324,-!p1@TBX18!0.71!7.83!TBX18;;chr4:299227..299272,-!p1@ZNF732!0.71!4.14!ZNF732;;chr2:169312600..169312606,+!p2@CERS6!0.70!6.75!CERS6;;chr7:27183291..27183324,-!p1@HOXA5!0.70!3.99!HOXA5;;chr17:41277372..41277418,-!p1@BRCA1!0.69!15.66!BRCA1;;chr9:16870710..16870763,-!p1@BNC2!0.69!7.21!BNC2;;chr11:46299199..46299233,+!p1@CREB3L1!0.68!22.41!CREB3L1;;chr10:114710244..114710257,+!p3@TCF7L2!0.67!11.05!TCF7L2;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.75!ZFPM2;;chr11:46299539..46299620,+!p2@CREB3L1!0.67!6.60!CREB3L1;;chr16:1031762..1031781,+!p1@SOX8!0.67!3.68!SOX8;;chr1:40105299..40105326,-!p1@HEYL!0.67!3.68!HEYL;;chr2:121493425..121493474,+!p1@GLI2!0.64!8.29!GLI2;;chr14:61116168..61116180,-!p2@SIX1!0.64!3.99!SIX1;;chr1:170632250..170632277,+!p7@PRRX1!0.64!3.38!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.63!12.13!TWIST2;;chr17:61919985..61920012,-!p3@SMARCD2!0.63!9.06!SMARCD2;;chr6:45296048..45296082,+!p1@RUNX2!0.63!3.84!RUNX2;;chr7:27142290..27142310,-!p1@HOXA2!0.63!3.22!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.63!3.22!HOXA5;;chr12:54422217..54422239,+!p3@HOXC6!0.63!3.22!HOXC6;;chr9:16705069..16705086,-!p3@BNC2!0.63!3.22!BNC2;;chr20:30193083..30193098,+!p1@ID1!0.62!311.46!ID1;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.99!TWIST2;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.77!HIF1A;;chr17:59477233..59477263,+!p1@TBX2!0.61!11.05!TBX2;;chr15:37390374..37390422,-!p9@MEIS2!0.61!3.99!MEIS2;;chr2:45236579..45236596,-!p2@SIX2!0.61!3.07!SIX2;;chr3:147127142..147127168,+!p1@ZIC1!0.61!3.07!ZIC1;;chr1:61547894..61547968,+!p2@NFIA!0.60!10.13!NFIA;;chr21:36260773..36260804,-!p7@RUNX1!0.60!4.30!RUNX1;;chr1:170632959..170632987,+!p4@PRRX1!0.60!3.38!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.59!17.81!HIF1A;;chr1:8934931..8934947,-!p4@ENO1!0.59!11.21!ENO1;;chr2:19558373..19558392,-!p1@OSR1!0.59!9.06!OSR1;;chr9:16728327..16728338,-!p5@BNC2!0.59!2.92!BNC2;;chr9:14083467..14083483,-!p4@NFIB!0.58!7.98!NFIB;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.22!ZNF492;;chr11:113930291..113930339,+!p2@ZBTB16!0.58!5.07!ZBTB16;;chr17:46655704..46655718,-!p2@HOXB4!0.58!4.61!HOXB4;;chr11:125034605..125034636,+!p2@PKNOX2!0.58!2.76!PKNOX2;;chr12:66218420..66218439,+!p12@HMGA2!0.58!2.76!HMGA2;;chr18:22932080..22932170,-!p1@ZNF521!0.57!13.97!ZNF521;;chr3:21792585..21792625,-!p2@ZNF385D!0.57!3.07!ZNF385D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.57!2.92!GLIS1;;chr12:2986206..2986258,-!p2@FOXM1!0.56!19.65!FOXM1;;chr17:46622070..46622109,-!p1@HOXB2!0.56!6.75!HOXB2;;chr1:23696308..23696339,-!p2@ZNF436!0.56!6.45!ZNF436;;chr1:23696348..23696363,-!p4@ZNF436!0.56!3.07!ZNF436;;chr11:125034640..125034655,+!p1@PKNOX2!0.56!2.61!PKNOX2;;chr2:102091144..102091183,-!p2@RFX8!0.56!2.61!RFX8;;chr7:27192185..27192209,-!p1@HOXA3!0.56!2.61!HOXA3;;chr8:77593750..77593757,+!p3@ZFHX4!0.56!2.61!ZFHX4;;chr15:96873984..96873999,+!p3@NR2F2!0.55!23.18!NR2F2;;chr20:42543441..42543497,+!p1@TOX2!0.55!14.12!TOX2;;chr9:14082760..14082775,-!p6@NFIB!0.55!4.76!NFIB;;chr19:13134772..13134822,+!p2@NFIX!0.55!4.14!NFIX;;chr9:16728161..16728185,-!p4@BNC2!0.54!2.46!BNC2;;chr1:119530857..119530884,-!p4@TBX15!0.54!2.46!TBX15;;chr5:176738887..176738934,-!p1@MXD3!0.53!19.96!MXD3;;chr19:20188776..20188826,+!p1@ZNF90!0.53!7.68!ZNF90;;chr17:41622765..41622821,-!p2@ETV4!0.53!3.99!ETV4;;chr1:8926441..8926473,-!p10@ENO1!0.53!3.99!ENO1;;chr3:126076264..126076305,-!p2@KLF15!0.53!3.68!KLF15;;chr6:85473156..85473210,-!p2@TBX18!0.53!3.07!TBX18;;chr6:34204672..34204692,+!p1@HMGA1!0.52!339.40!HMGA1;;chr15:37392724..37392757,-!p1@MEIS2!0.52!13.20!MEIS2;;chr1:158979872..158979898,+!p3@IFI16!0.52!8.75!IFI16;;chr3:24536253..24536328,-!p1@THRB!0.52!5.07!THRB;;chr12:66218378..66218401,+!p6@HMGA2!0.52!3.99!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!0.52!3.22!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!0.52!2.30!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!0.52!2.30!RFX8;;chr2:119604456..119604501,-!p2@EN1!0.52!2.30!EN1;;chr12:54410948..54410992,+!p3@HOXC5!0.52!2.30!HOXC5;;chr11:65687362..65687436,+!p3@DRAP1!0.51!12.89!DRAP1;;chr21:36421535..36421610,-!p2@RUNX1!0.51!9.82!RUNX1;;chr9:73029219..73029289,-!p2@KLF9!0.51!8.29!KLF9;;chr20:50721803..50721857,-!p2@ZFP64!0.51!3.99!ZFP64;;chr19:23299814..23299844,+!p1@ZNF730!0.51!2.92!ZNF730;;chr1:158979792..158979814,+!p2@IFI16!0.50!27.32!IFI16;;chr12:3068544..3068597,+!p1@TEAD4!0.50!16.73!TEAD4;;chr2:214015111..214015179,-!p1@IKZF2!0.50!4.45!IKZF2;;chr8:128747661..128747703,+!p6@MYC!0.50!3.22!MYC;;chr17:46675420..46675465,-!p3@HOXB6!0.50!2.61!HOXB6;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.50!2.15!PEG3;;chr3:25470062..25470084,+!p4@RARB!0.50!2.15!RARB;;chr11:113930401..113930422,+!p3@ZBTB16!0.50!2.15!ZBTB16;;chr11:17741254..17741282,+!p2@MYOD1!0.50!2.15!MYOD1;;chr12:66358080..66358094,+!p15@HMGA2!0.50!2.15!HMGA2;;chr12:81110684..81110700,+!p1@MYF5!0.50!2.15!MYF5;;chr12:66218836..66218888,+!p1@HMGA2!0.49!26.10!HMGA2;;chr1:8926369..8926385,-!p12@ENO1!0.49!3.07!ENO1;;chr12:54447599..54447630,+!p3@HOXC4!0.49!2.76!HOXC4;;chr12:66218152..66218174,+!p10@HMGA2!0.49!2.30!HMGA2;;chr17:46622114..46622138,-!p4@HOXB2!0.48!3.53!HOXB2;;chr1:247171316..247171336,-!p3@ZNF695!0.48!3.38!ZNF695;;chr12:54402745..54402788,+!p1@HOXC8!0.48!2.00!HOXC8;;chr9:16871214..16871260,-!p11@BNC2!0.48!2.00!BNC2;;chr14:95236440..95236465,-!p1@GSC!0.48!2.00!GSC;;chr2:214014959..214015006,-!p4@IKZF2!0.48!2.00!IKZF2;;chr3:147111231..147111281,+!p3@ZIC1!0.48!2.00!ZIC1;;chr14:62162224..62162254,+!p1@HIF1A!0.47!388.67!HIF1A;;chr3:114343768..114343822,-!p1@ZBTB20!0.47!11.21!ZBTB20;;chr17:41623009..41623053,-!p4@ETV4!0.47!3.68!ETV4;;chr5:138609782..138609826,+!p5@MATR3!0.46!16.42!MATR3;;chr8:77593474..77593612,+!p1@ZFHX4!0.46!10.44!ZFHX4;;chr5:76383070..76383117,-!p3@ZBED3!0.46!4.61!ZBED3;;chr10:70320074..70320106,+!p1@TET1!0.46!4.61!TET1;;chr1:247171347..247171366,-!p2@ZNF695!0.46!4.14!ZNF695;;chr2:208030647..208030689,-!p1@KLF7!0.45!20.72!KLF7;;chr11:65686732..65686756,+!p2@DRAP1!0.45!10.28!DRAP1;;chr20:42543506..42543549,+!p2@TOX2!0.45!5.53!TOX2;;chr9:4300016..4300039,-!p2@GLIS3!0.45!3.68!GLIS3;;chr12:66218573..66218596,+!p7@HMGA2!0.45!3.07!HMGA2;;chr12:54394309..54394336,+!p2@HOXC9!0.45!1.84!HOXC9;;chr22:19748231..19748317,+!p1@TBX1!0.45!1.84!TBX1;;chr3:21792631..21792665,-!p3@ZNF385D!0.45!1.84!ZNF385D;;chr3:21792790..21792824,-!p4@ZNF385D!0.45!1.84!ZNF385D;;chr1:170633194..170633205,+!p18@PRRX1!0.45!1.84!PRRX1;;chr20:42295713..42295738,+!p2@MYBL2!0.44!14.28!MYBL2;;chr2:239148671..239148686,-!p1@HES6!0.44!8.44!HES6;;chr6:126240380..126240430,+!p2@NCOA7!0.44!5.83!NCOA7;;chr14:24837368..24837401,+!p1@NFATC4!0.44!5.22!NFATC4;;chr16:8962202..8962222,-!p3@CARHSP1!0.44!3.68!CARHSP1;;chr12:66218443..66218461,+!p8@HMGA2!0.44!2.46!HMGA2;;chr1:8938766..8938774,-!p2@ENO1!0.43!167.47!ENO1;;chr9:73028814..73028895,-!p1@KLF9!0.43!23.79!KLF9;;chr6:31126291..31126399,+!p1@TCF19!0.43!22.87!TCF19;;chr12:7079780..7079791,-!p2@PHB2!0.43!12.28!PHB2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.43!10.44!TAL1;;chr6:45390025..45390076,+!p2@RUNX2!0.43!5.22!RUNX2;;chr4:206390..206444,+!p1@ZNF876P!0.43!3.68!ZNF876P;;chr14:62213827..62213853,+!p6@HIF1A!0.43!2.76!HIF1A;;chr5:72743793..72743855,-!p4@FOXD1!0.43!2.15!FOXD1;;chr11:46299186..46299195,+!p3@CREB3L1!0.43!2.00!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!0.43!1.69!HOXC9;;chr5:158524625..158524669,-!p6@EBF1!0.43!1.69!EBF1;;chr7:27205136..27205164,-!p1@HOXA9!0.43!1.69!HOXA9;;chr2:24714729..24714761,+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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Skeletal%2520Muscle%2520Cells%252c%2520donor5.CNhs12056.11455-119A6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11455-119A6 | |id=FF:11455-119A6 | ||
|is_a=EFO:0002091;;FF:0000162 | |is_a=EFO:0002091;;FF:0000162 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12056 | |||
|library_id_phase_based=2:CNhs12056 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11455 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11455 | |||
|name=Skeletal Muscle Cells, donor5 | |name=Skeletal Muscle Cells, donor5 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12056,LSID838,release011,COMPLETED | |profile_hcage=CNhs12056,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC3505 | |rna_catalog_number=SC3505 | ||
| Line 58: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 101: | ||
|top_motifs=RXR{A,B,G}:1.30564494981;NKX3-1:1.17634318144;GFI1:1.12465819133;GZF1:1.06602547583;TFAP4:1.05071350239;GFI1B:1.01987577525;NKX2-2,8:0.987514708068;SRF:0.962172067791;HES1:0.959239289932;NR3C1:0.95668273311;PAX4:0.934193119061;UFEwm:0.925374441304;YY1:0.891341919059;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.880413477104;E2F1..5:0.87466098888;EN1,2:0.861923409341;AIRE:0.853795534151;ALX4:0.853451133416;PBX1:0.837724526632;POU6F1:0.8169628355;HOX{A5,B5}:0.765421523241;NANOG{mouse}:0.741634969873;TOPORS:0.73676176613;ESRRA:0.700028264106;NKX2-1,4:0.683976018064;MYBL2:0.673265361784;POU3F1..4:0.65300633442;HOX{A4,D4}:0.641752168172;RXRA_VDR{dimer}:0.633649830991;NFY{A,B,C}:0.630596460776;NR5A1,2:0.628839486653;AR:0.626609340185;FOXP1:0.62382025309;TAL1_TCF{3,4,12}:0.600564182545;HSF1,2:0.598065941135;TLX1..3_NFIC{dimer}:0.579557314815;XBP1:0.569611099918;PDX1:0.563877509234;NR1H4:0.548489394499;TEAD1:0.535941277335;TFDP1:0.535837807307;TBP:0.5220220586;IKZF1:0.516521528678;ESR1:0.510694625726;KLF4:0.501887977725;SOX17:0.501776337317;EVI1:0.501470449887;ZNF238:0.494319792437;ZNF143:0.488594546822;ELK1,4_GABP{A,B1}:0.468619545858;EBF1:0.45903557857;FOXD3:0.457738827313;GLI1..3:0.450940599798;PAX5:0.439810885786;NFE2L1:0.438629453234;ZIC1..3:0.416052482662;ATF6:0.404132764316;POU1F1:0.387661621464;MEF2{A,B,C,D}:0.370571154768;TBX4,5:0.344303435473;NRF1:0.343598258117;MZF1:0.31366108639;STAT1,3:0.304217935863;NFIX:0.285394804671;MYB:0.264148895697;GTF2A1,2:0.260601061296;TFCP2:0.259903600367;FOXL1:0.259830860566;CDC5L:0.253104556294;ZNF423:0.251899629177;FOXM1:0.244140598771;XCPE1{core}:0.239550733738;AHR_ARNT_ARNT2:0.229797729729;PAX8:0.218072442984;POU2F1..3:0.191343934605;STAT5{A,B}:0.175252226298;SPZ1:0.173775930793;T:0.150901547909;GTF2I:0.145528662962;CDX1,2,4:0.127273888676;MYOD1:0.111759072359;ZNF384:0.0903418547356;NR6A1:0.080897810097;TFAP2{A,C}:0.0790249968187;PAX3,7:0.0777668739265;ZBTB6:0.0647538579104;ZBTB16:0.0579782964813;PRRX1,2:0.0556269387916;NKX6-1,2:0.0490791523874;TP53:0.0471773104717;STAT2,4,6:0.0423649531539;HNF4A_NR2F1,2:0.0420698784993;HIC1:0.0231209400336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0209287314516;EGR1..3:0.020562161037;GATA4:0.0147592339194;PITX1..3:0.0108848993899;GCM1,2:0.00831391687667;BACH2:0.00264753336447;bHLH_family:-0.00523829649819;NHLH1,2:-0.0116770971077;PATZ1:-0.0118449666277;HIF1A:-0.01287675522;ONECUT1,2:-0.0220132566732;LHX3,4:-0.0242846579453;HNF1A:-0.0296001762574;NKX2-3_NKX2-5:-0.0312348742375;CREB1:-0.0404205908411;SOX5:-0.0501139582325;ALX1:-0.0774659428442;SP1:-0.101273179161;MAZ:-0.101310818742;NFATC1..3:-0.103527765073;FOS_FOS{B,L1}_JUN{B,D}:-0.11535844471;RBPJ:-0.139525922852;ZNF148:-0.144928412479;BREu{core}:-0.145169062853;PAX1,9:-0.157019119736;LEF1_TCF7_TCF7L1,2:-0.158176038799;HOXA9_MEIS1:-0.161766788466;ZFP161:-0.169357201977;MYFfamily:-0.173487370218;HLF:-0.174810244257;PRDM1:-0.185350144664;CEBPA,B_DDIT3:-0.193225892881;ELF1,2,4:-0.207168648355;DBP:-0.2094187125;ARID5B:-0.212040912484;HAND1,2:-0.216074272062;MTF1:-0.220053390734;SMAD1..7,9:-0.228582451392;TGIF1:-0.229141865717;NFE2L2:-0.23532756797;FOXP3:-0.243956195723;RFX1:-0.248632812256;TFAP2B:-0.256249253393;MAFB:-0.295142486274;RREB1:-0.308563683743;NFE2:-0.314479628192;MTE{core}:-0.32550035303;FOSL2:-0.326789092701;NKX3-2:-0.331479303753;RUNX1..3:-0.332508104286;SOX{8,9,10}:-0.344873880526;PPARG:-0.346988378528;RFX2..5_RFXANK_RFXAP:-0.34909251048;TEF:-0.370588294756;CUX2:-0.385070245047;REST:-0.401460691946;MED-1{core}:-0.40790443202;JUN:-0.416235178135;CRX:-0.416504900935;NFKB1_REL_RELA:-0.422014042643;PAX6:-0.450274096638;ADNP_IRX_SIX_ZHX:-0.458671391409;IKZF2:-0.459645598762;SPI1:-0.476412679945;BPTF:-0.494746664269;DMAP1_NCOR{1,2}_SMARC:-0.519659124293;POU5F1:-0.544405287798;HMX1:-0.563152986661;SPIB:-0.598838303918;OCT4_SOX2{dimer}:-0.60550059819;ATF4:-0.610296407593;ATF5_CREB3:-0.620040340472;PAX2:-0.624019340283;VSX1,2:-0.629473826589;ETS1,2:-0.636922170737;TLX2:-0.653256649792;IRF7:-0.672752889195;IRF1,2:-0.673504093411;NANOG:-0.67468470288;SNAI1..3:-0.676654027067;EP300:-0.680035585435;NFIL3:-0.707495350265;ATF2:-0.740089494288;SOX2:-0.745362996001;FOXO1,3,4:-0.7501982402;GATA6:-0.764516308409;RORA:-0.774573218058;FOX{I1,J2}:-0.866523749424;FOXA2:-0.870588492146;FOX{F1,F2,J1}:-0.876467184876;LMO2:-0.880719086535;SREBF1,2:-0.907837186258;HMGA1,2:-0.933794502241;FOX{D1,D2}:-0.961945603093;HBP1_HMGB_SSRP1_UBTF:-0.9877093808;HOX{A6,A7,B6,B7}:-1.03629139394;FOXN1:-1.0494616731;ZEB1:-1.05755967633;FOXQ1:-1.14118919103 | |top_motifs=RXR{A,B,G}:1.30564494981;NKX3-1:1.17634318144;GFI1:1.12465819133;GZF1:1.06602547583;TFAP4:1.05071350239;GFI1B:1.01987577525;NKX2-2,8:0.987514708068;SRF:0.962172067791;HES1:0.959239289932;NR3C1:0.95668273311;PAX4:0.934193119061;UFEwm:0.925374441304;YY1:0.891341919059;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.880413477104;E2F1..5:0.87466098888;EN1,2:0.861923409341;AIRE:0.853795534151;ALX4:0.853451133416;PBX1:0.837724526632;POU6F1:0.8169628355;HOX{A5,B5}:0.765421523241;NANOG{mouse}:0.741634969873;TOPORS:0.73676176613;ESRRA:0.700028264106;NKX2-1,4:0.683976018064;MYBL2:0.673265361784;POU3F1..4:0.65300633442;HOX{A4,D4}:0.641752168172;RXRA_VDR{dimer}:0.633649830991;NFY{A,B,C}:0.630596460776;NR5A1,2:0.628839486653;AR:0.626609340185;FOXP1:0.62382025309;TAL1_TCF{3,4,12}:0.600564182545;HSF1,2:0.598065941135;TLX1..3_NFIC{dimer}:0.579557314815;XBP1:0.569611099918;PDX1:0.563877509234;NR1H4:0.548489394499;TEAD1:0.535941277335;TFDP1:0.535837807307;TBP:0.5220220586;IKZF1:0.516521528678;ESR1:0.510694625726;KLF4:0.501887977725;SOX17:0.501776337317;EVI1:0.501470449887;ZNF238:0.494319792437;ZNF143:0.488594546822;ELK1,4_GABP{A,B1}:0.468619545858;EBF1:0.45903557857;FOXD3:0.457738827313;GLI1..3:0.450940599798;PAX5:0.439810885786;NFE2L1:0.438629453234;ZIC1..3:0.416052482662;ATF6:0.404132764316;POU1F1:0.387661621464;MEF2{A,B,C,D}:0.370571154768;TBX4,5:0.344303435473;NRF1:0.343598258117;MZF1:0.31366108639;STAT1,3:0.304217935863;NFIX:0.285394804671;MYB:0.264148895697;GTF2A1,2:0.260601061296;TFCP2:0.259903600367;FOXL1:0.259830860566;CDC5L:0.253104556294;ZNF423:0.251899629177;FOXM1:0.244140598771;XCPE1{core}:0.239550733738;AHR_ARNT_ARNT2:0.229797729729;PAX8:0.218072442984;POU2F1..3:0.191343934605;STAT5{A,B}:0.175252226298;SPZ1:0.173775930793;T:0.150901547909;GTF2I:0.145528662962;CDX1,2,4:0.127273888676;MYOD1:0.111759072359;ZNF384:0.0903418547356;NR6A1:0.080897810097;TFAP2{A,C}:0.0790249968187;PAX3,7:0.0777668739265;ZBTB6:0.0647538579104;ZBTB16:0.0579782964813;PRRX1,2:0.0556269387916;NKX6-1,2:0.0490791523874;TP53:0.0471773104717;STAT2,4,6:0.0423649531539;HNF4A_NR2F1,2:0.0420698784993;HIC1:0.0231209400336;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0209287314516;EGR1..3:0.020562161037;GATA4:0.0147592339194;PITX1..3:0.0108848993899;GCM1,2:0.00831391687667;BACH2:0.00264753336447;bHLH_family:-0.00523829649819;NHLH1,2:-0.0116770971077;PATZ1:-0.0118449666277;HIF1A:-0.01287675522;ONECUT1,2:-0.0220132566732;LHX3,4:-0.0242846579453;HNF1A:-0.0296001762574;NKX2-3_NKX2-5:-0.0312348742375;CREB1:-0.0404205908411;SOX5:-0.0501139582325;ALX1:-0.0774659428442;SP1:-0.101273179161;MAZ:-0.101310818742;NFATC1..3:-0.103527765073;FOS_FOS{B,L1}_JUN{B,D}:-0.11535844471;RBPJ:-0.139525922852;ZNF148:-0.144928412479;BREu{core}:-0.145169062853;PAX1,9:-0.157019119736;LEF1_TCF7_TCF7L1,2:-0.158176038799;HOXA9_MEIS1:-0.161766788466;ZFP161:-0.169357201977;MYFfamily:-0.173487370218;HLF:-0.174810244257;PRDM1:-0.185350144664;CEBPA,B_DDIT3:-0.193225892881;ELF1,2,4:-0.207168648355;DBP:-0.2094187125;ARID5B:-0.212040912484;HAND1,2:-0.216074272062;MTF1:-0.220053390734;SMAD1..7,9:-0.228582451392;TGIF1:-0.229141865717;NFE2L2:-0.23532756797;FOXP3:-0.243956195723;RFX1:-0.248632812256;TFAP2B:-0.256249253393;MAFB:-0.295142486274;RREB1:-0.308563683743;NFE2:-0.314479628192;MTE{core}:-0.32550035303;FOSL2:-0.326789092701;NKX3-2:-0.331479303753;RUNX1..3:-0.332508104286;SOX{8,9,10}:-0.344873880526;PPARG:-0.346988378528;RFX2..5_RFXANK_RFXAP:-0.34909251048;TEF:-0.370588294756;CUX2:-0.385070245047;REST:-0.401460691946;MED-1{core}:-0.40790443202;JUN:-0.416235178135;CRX:-0.416504900935;NFKB1_REL_RELA:-0.422014042643;PAX6:-0.450274096638;ADNP_IRX_SIX_ZHX:-0.458671391409;IKZF2:-0.459645598762;SPI1:-0.476412679945;BPTF:-0.494746664269;DMAP1_NCOR{1,2}_SMARC:-0.519659124293;POU5F1:-0.544405287798;HMX1:-0.563152986661;SPIB:-0.598838303918;OCT4_SOX2{dimer}:-0.60550059819;ATF4:-0.610296407593;ATF5_CREB3:-0.620040340472;PAX2:-0.624019340283;VSX1,2:-0.629473826589;ETS1,2:-0.636922170737;TLX2:-0.653256649792;IRF7:-0.672752889195;IRF1,2:-0.673504093411;NANOG:-0.67468470288;SNAI1..3:-0.676654027067;EP300:-0.680035585435;NFIL3:-0.707495350265;ATF2:-0.740089494288;SOX2:-0.745362996001;FOXO1,3,4:-0.7501982402;GATA6:-0.764516308409;RORA:-0.774573218058;FOX{I1,J2}:-0.866523749424;FOXA2:-0.870588492146;FOX{F1,F2,J1}:-0.876467184876;LMO2:-0.880719086535;SREBF1,2:-0.907837186258;HMGA1,2:-0.933794502241;FOX{D1,D2}:-0.961945603093;HBP1_HMGB_SSRP1_UBTF:-0.9877093808;HOX{A6,A7,B6,B7}:-1.03629139394;FOXN1:-1.0494616731;ZEB1:-1.05755967633;FOXQ1:-1.14118919103 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11455-119A6;search_select_hide=table117:FF:11455-119A6 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Skeletal Muscle Cells, donor5 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12056 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12056
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12056
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.732 |
| 10 | 10 | 0.147 |
| 100 | 100 | 0.446 |
| 101 | 101 | 0.365 |
| 102 | 102 | 0.492 |
| 103 | 103 | 0.512 |
| 104 | 104 | 0.808 |
| 105 | 105 | 0.312 |
| 106 | 106 | 0.00122 |
| 107 | 107 | 0.815 |
| 108 | 108 | 0.833 |
| 109 | 109 | 0.686 |
| 11 | 11 | 0.4 |
| 110 | 110 | 0.00462 |
| 111 | 111 | 0.848 |
| 112 | 112 | 0.118 |
| 113 | 113 | 0.38 |
| 114 | 114 | 0.132 |
| 115 | 115 | 0.682 |
| 116 | 116 | 0.143 |
| 117 | 117 | 0.373 |
| 118 | 118 | 0.952 |
| 119 | 119 | 0.325 |
| 12 | 12 | 0.417 |
| 120 | 120 | 0.0981 |
| 121 | 121 | 0.807 |
| 122 | 122 | 6.72538e-4 |
| 123 | 123 | 0.101 |
| 124 | 124 | 0.23 |
| 125 | 125 | 0.653 |
| 126 | 126 | 0.67 |
| 127 | 127 | 0.111 |
| 128 | 128 | 0.4 |
| 129 | 129 | 0.183 |
| 13 | 13 | 0.185 |
| 130 | 130 | 0.299 |
| 131 | 131 | 0.872 |
| 132 | 132 | 0.49 |
| 133 | 133 | 0.807 |
| 134 | 134 | 0.441 |
| 135 | 135 | 0.159 |
| 136 | 136 | 0.114 |
| 137 | 137 | 0.0309 |
| 138 | 138 | 0.0295 |
| 139 | 139 | 0.0821 |
| 14 | 14 | 0.241 |
| 140 | 140 | 0.436 |
| 141 | 141 | 0.908 |
| 142 | 142 | 0.964 |
| 143 | 143 | 0.112 |
| 144 | 144 | 0.717 |
| 145 | 145 | 0.939 |
| 146 | 146 | 0.771 |
| 147 | 147 | 0.509 |
| 148 | 148 | 0.322 |
| 149 | 149 | 0.762 |
| 15 | 15 | 0.245 |
| 150 | 150 | 0.974 |
| 151 | 151 | 0.677 |
| 152 | 152 | 0.388 |
| 153 | 153 | 0.476 |
| 154 | 154 | 0.604 |
| 155 | 155 | 0.0483 |
| 156 | 156 | 0.163 |
| 157 | 157 | 0.324 |
| 158 | 158 | 0.0102 |
| 159 | 159 | 0.145 |
| 16 | 16 | 0.511 |
| 160 | 160 | 0.301 |
| 161 | 161 | 0.896 |
| 162 | 162 | 0.0913 |
| 163 | 163 | 0.347 |
| 164 | 164 | 0.291 |
| 165 | 165 | 0.288 |
| 166 | 166 | 0.227 |
| 167 | 167 | 0.191 |
| 168 | 168 | 0.217 |
| 169 | 169 | 0.456 |
| 17 | 17 | 0.735 |
| 18 | 18 | 0.554 |
| 19 | 19 | 0.21 |
| 2 | 2 | 0.823 |
| 20 | 20 | 0.963 |
| 21 | 21 | 0.0519 |
| 22 | 22 | 0.793 |
| 23 | 23 | 0.0312 |
| 24 | 24 | 0.32 |
| 25 | 25 | 0.632 |
| 26 | 26 | 0.116 |
| 27 | 27 | 0.563 |
| 28 | 28 | 0.102 |
| 29 | 29 | 0.225 |
| 3 | 3 | 0.924 |
| 30 | 30 | 0.949 |
| 31 | 31 | 0.505 |
| 32 | 32 | 0.00184 |
| 33 | 33 | 0.366 |
| 34 | 34 | 0.967 |
| 35 | 35 | 0.218 |
| 36 | 36 | 0.214 |
| 37 | 37 | 0.741 |
| 38 | 38 | 0.571 |
| 39 | 39 | 0.501 |
| 4 | 4 | 0.0612 |
| 40 | 40 | 0.193 |
| 41 | 41 | 0.00448 |
| 42 | 42 | 0.532 |
| 43 | 43 | 0.488 |
| 44 | 44 | 0.13 |
| 45 | 45 | 0.108 |
| 46 | 46 | 0.738 |
| 47 | 47 | 0.894 |
| 48 | 48 | 0.599 |
| 49 | 49 | 0.177 |
| 5 | 5 | 0.296 |
| 50 | 50 | 0.386 |
| 51 | 51 | 0.588 |
| 52 | 52 | 0.294 |
| 53 | 53 | 0.331 |
| 54 | 54 | 0.538 |
| 55 | 55 | 0.946 |
| 56 | 56 | 0.941 |
| 57 | 57 | 0.954 |
| 58 | 58 | 0.128 |
| 59 | 59 | 0.967 |
| 6 | 6 | 0.571 |
| 60 | 60 | 0.0856 |
| 61 | 61 | 0.414 |
| 62 | 62 | 0.135 |
| 63 | 63 | 0.815 |
| 64 | 64 | 0.95 |
| 65 | 65 | 0.54 |
| 66 | 66 | 0.572 |
| 67 | 67 | 0.494 |
| 68 | 68 | 0.203 |
| 69 | 69 | 0.576 |
| 7 | 7 | 0.538 |
| 70 | 70 | 0.024 |
| 71 | 71 | 0.489 |
| 72 | 72 | 0.196 |
| 73 | 73 | 0.622 |
| 74 | 74 | 0.744 |
| 75 | 75 | 0.446 |
| 76 | 76 | 0.935 |
| 77 | 77 | 0.982 |
| 78 | 78 | 0.683 |
| 79 | 79 | 0.0287 |
| 8 | 8 | 0.225 |
| 80 | 80 | 0.0341 |
| 81 | 81 | 0.49 |
| 82 | 82 | 0.07 |
| 83 | 83 | 0.889 |
| 84 | 84 | 0.885 |
| 85 | 85 | 0.00575 |
| 86 | 86 | 0.584 |
| 87 | 87 | 0.0979 |
| 88 | 88 | 0.573 |
| 89 | 89 | 0.679 |
| 9 | 9 | 0.864 |
| 90 | 90 | 0.425 |
| 91 | 91 | 0.442 |
| 92 | 92 | 0.687 |
| 93 | 93 | 0.731 |
| 94 | 94 | 0.718 |
| 95 | 95 | 0.224 |
| 96 | 96 | 0.338 |
| 97 | 97 | 0.885 |
| 98 | 98 | 0.422 |
| 99 | 99 | 8.93668e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12056
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000188 (cell of skeletal muscle)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000162 (human skeletal muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
