FF:11492-119E7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004719 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004719 | ||
|accession_numbers=CAGE;DRX008249;DRR009121;DRZ000546;DRZ001931;DRZ011896;DRZ013281 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037228;DRR041594;DRZ007236 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005284,UBERON:0005629,UBERON:0002049,UBERON:0006876,UBERON:0005358,UBERON:0010317,UBERON:0007798,UBERON:0001017,UBERON:0001886,UBERON:0001016,UBERON:0004535,UBERON:0004086,UBERON:0005282,UBERON:0001009,UBERON:0005281 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002549 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000060 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor1.CNhs11319.11492-119E7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor1.CNhs11319.11492-119E7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor1.CNhs11319.11492-119E7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor1.CNhs11319.11492-119E7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Choroid%2520Plexus%252c%2520donor1.CNhs11319.11492-119E7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11492-119E7 | |id=FF:11492-119E7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000060 | ||
|is_obsolete= | |||
|library_id=CNhs11319 | |||
|library_id_phase_based=2:CNhs11319 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11492 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.TGACCA.11492 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11492 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.TGACCA.11492 | |||
|name=Fibroblast - Choroid Plexus, donor1 | |name=Fibroblast - Choroid Plexus, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11319,LSID767,release009,COMPLETED | |profile_hcage=CNhs11319,LSID767,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC1325 | |rna_catalog_number=SC1325 | ||
| Line 54: | Line 80: | ||
|rna_rin=9.5 | |rna_rin=9.5 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.19E+09 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.TGACCA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:5658 | |sample_cell_catalog=lot:5658 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.18637787762808e-211!GO:0005737;cytoplasm;2.00549498283864e-182!GO:0043226;organelle;9.41694791024721e-167!GO:0043231;intracellular membrane-bound organelle;1.00949945385437e-166!GO:0043229;intracellular organelle;1.14939806942171e-166!GO:0043227;membrane-bound organelle;2.37685950337601e-166!GO:0044444;cytoplasmic part;4.54819773518323e-132!GO:0044422;organelle part;1.1808155734512e-116!GO:0044446;intracellular organelle part;2.26782616427339e-115!GO:0032991;macromolecular complex;2.0536996278351e-73!GO:0044238;primary metabolic process;2.0536996278351e-73!GO:0044237;cellular metabolic process;3.2994993225794e-73!GO:0005515;protein binding;4.49303266663896e-73!GO:0030529;ribonucleoprotein complex;7.40386518661388e-70!GO:0043170;macromolecule metabolic process;1.23801158889525e-64!GO:0043233;organelle lumen;1.38131605767183e-58!GO:0031974;membrane-enclosed lumen;1.38131605767183e-58!GO:0005739;mitochondrion;9.19973035425599e-58!GO:0003723;RNA binding;8.57671163686092e-56!GO:0005634;nucleus;5.35181587406852e-55!GO:0031090;organelle membrane;7.53751424936667e-53!GO:0044428;nuclear part;1.13487466366177e-51!GO:0005840;ribosome;4.12965445132739e-45!GO:0019538;protein metabolic process;2.08848317349921e-43!GO:0016043;cellular component organization and biogenesis;1.65440797751334e-42!GO:0006412;translation;7.9948019993596e-41!GO:0003735;structural constituent of ribosome;1.10690618167735e-40!GO:0015031;protein transport;1.58226654234777e-40!GO:0009058;biosynthetic process;1.68584523317901e-39!GO:0033036;macromolecule localization;1.72303596632574e-39!GO:0044429;mitochondrial part;5.99285863617392e-39!GO:0044260;cellular macromolecule metabolic process;1.43091531259695e-38!GO:0044267;cellular protein metabolic process;1.17361854686039e-37!GO:0045184;establishment of protein localization;2.83207587661659e-37!GO:0008104;protein localization;5.74212224269449e-37!GO:0033279;ribosomal subunit;7.57405334481804e-36!GO:0043234;protein complex;1.20492069923944e-35!GO:0006396;RNA processing;4.55354709167858e-35!GO:0031967;organelle envelope;4.7557777811499e-35!GO:0009059;macromolecule biosynthetic process;6.16436603376618e-35!GO:0044249;cellular biosynthetic process;8.34585776727354e-35!GO:0031975;envelope;8.42411685783696e-35!GO:0005829;cytosol;4.08380822895654e-34!GO:0031981;nuclear lumen;3.13830719111978e-33!GO:0043283;biopolymer metabolic process;7.95150507409415e-32!GO:0010467;gene expression;8.6484589558122e-32!GO:0046907;intracellular transport;1.08046981368837e-31!GO:0016071;mRNA metabolic process;7.15941634232461e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.94278240965661e-28!GO:0005740;mitochondrial envelope;7.95583404913363e-27!GO:0008380;RNA splicing;1.9363492722078e-26!GO:0006886;intracellular protein transport;2.38742634746984e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.38742634746984e-26!GO:0065003;macromolecular complex assembly;1.26308992214717e-25!GO:0031966;mitochondrial membrane;2.1770716468697e-25!GO:0019866;organelle inner membrane;3.02492760061412e-25!GO:0006397;mRNA processing;6.08949894178514e-25!GO:0006996;organelle organization and biogenesis;1.22096647967894e-24!GO:0005783;endoplasmic reticulum;2.09518344373517e-24!GO:0005743;mitochondrial inner membrane;1.02435147743937e-23!GO:0022607;cellular component assembly;4.95520470034774e-23!GO:0012505;endomembrane system;8.30422590064831e-23!GO:0044445;cytosolic part;7.90367232169981e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.88032286794179e-21!GO:0005654;nucleoplasm;3.88955010364482e-21!GO:0044432;endoplasmic reticulum part;1.87592482885638e-20!GO:0043228;non-membrane-bound organelle;2.09568684211215e-20!GO:0043232;intracellular non-membrane-bound organelle;2.09568684211215e-20!GO:0005794;Golgi apparatus;8.4889529217171e-20!GO:0006119;oxidative phosphorylation;8.7777432562892e-20!GO:0051649;establishment of cellular localization;4.54342140155886e-19!GO:0051641;cellular localization;9.74991183145047e-19!GO:0015935;small ribosomal subunit;2.32142280577722e-18!GO:0015934;large ribosomal subunit;2.39523521139449e-18!GO:0006457;protein folding;2.39523521139449e-18!GO:0044451;nucleoplasm part;2.51381570334368e-18!GO:0005681;spliceosome;3.46291111291526e-18!GO:0048770;pigment granule;3.69187357974e-17!GO:0042470;melanosome;3.69187357974e-17!GO:0044455;mitochondrial membrane part;4.68625125349454e-17!GO:0008134;transcription factor binding;6.17135895260988e-17!GO:0006259;DNA metabolic process;3.2534492251414e-16!GO:0003676;nucleic acid binding;2.85358127697334e-15!GO:0051186;cofactor metabolic process;3.32469975579695e-15!GO:0016874;ligase activity;3.4347142795279e-15!GO:0048193;Golgi vesicle transport;4.37011614045397e-15!GO:0031980;mitochondrial lumen;4.58697903702376e-15!GO:0005759;mitochondrial matrix;4.58697903702376e-15!GO:0005746;mitochondrial respiratory chain;8.40231029912104e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.27559030935356e-14!GO:0006512;ubiquitin cycle;2.92725504273931e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.39462701414983e-14!GO:0005789;endoplasmic reticulum membrane;3.46543793082509e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.00315434215811e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.59361364685248e-14!GO:0000166;nucleotide binding;6.49715197988311e-14!GO:0016462;pyrophosphatase activity;6.56246571033149e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.5330916216028e-14!GO:0022618;protein-RNA complex assembly;7.60638737812695e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;9.18235477707894e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.25467379817157e-13!GO:0003954;NADH dehydrogenase activity;1.25467379817157e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25467379817157e-13!GO:0044265;cellular macromolecule catabolic process;1.40091830435238e-13!GO:0016192;vesicle-mediated transport;2.48607813912021e-13!GO:0017111;nucleoside-triphosphatase activity;3.15327718629629e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;4.31815067495043e-13!GO:0007049;cell cycle;6.0603721770253e-13!GO:0000502;proteasome complex (sensu Eukaryota);8.07067071057636e-13!GO:0044257;cellular protein catabolic process;8.29981528573834e-13!GO:0006605;protein targeting;8.65923079072495e-13!GO:0019941;modification-dependent protein catabolic process;8.95869403993564e-13!GO:0043632;modification-dependent macromolecule catabolic process;8.95869403993564e-13!GO:0006511;ubiquitin-dependent protein catabolic process;1.2584351919517e-12!GO:0016070;RNA metabolic process;1.39067261780941e-12!GO:0005793;ER-Golgi intermediate compartment;3.17217496180482e-12!GO:0051082;unfolded protein binding;3.80064195805087e-12!GO:0006732;coenzyme metabolic process;3.80464605242177e-12!GO:0043285;biopolymer catabolic process;4.27344330280326e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.41304881341266e-12!GO:0042773;ATP synthesis coupled electron transport;4.41304881341266e-12!GO:0005730;nucleolus;4.63044320881849e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.11171241479034e-12!GO:0045271;respiratory chain complex I;6.11171241479034e-12!GO:0005747;mitochondrial respiratory chain complex I;6.11171241479034e-12!GO:0008135;translation factor activity, nucleic acid binding;1.53345830716349e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.63617307744562e-11!GO:0044248;cellular catabolic process;1.87232298629174e-11!GO:0009057;macromolecule catabolic process;2.10866298261727e-11!GO:0005761;mitochondrial ribosome;3.21624132531519e-11!GO:0000313;organellar ribosome;3.21624132531519e-11!GO:0003712;transcription cofactor activity;3.99140714343811e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.08042849114594e-11!GO:0043412;biopolymer modification;5.15151696472929e-11!GO:0030163;protein catabolic process;8.39386483229606e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;9.84355651390219e-11!GO:0000375;RNA splicing, via transesterification reactions;9.84355651390219e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.84355651390219e-11!GO:0009055;electron carrier activity;2.92149200465568e-10!GO:0006464;protein modification process;3.87345445450572e-10!GO:0022402;cell cycle process;2.3423770060714e-09!GO:0003743;translation initiation factor activity;2.56408449320292e-09!GO:0032553;ribonucleotide binding;3.78563222940436e-09!GO:0032555;purine ribonucleotide binding;3.78563222940436e-09!GO:0005635;nuclear envelope;4.08527050069654e-09!GO:0016604;nuclear body;4.15913552141896e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;4.37046244071383e-09!GO:0017076;purine nucleotide binding;5.28273224224145e-09!GO:0008565;protein transporter activity;6.15102337927978e-09!GO:0006413;translational initiation;6.32508384591859e-09!GO:0048523;negative regulation of cellular process;6.49831427977203e-09!GO:0044431;Golgi apparatus part;7.88937447826967e-09!GO:0005788;endoplasmic reticulum lumen;8.54067017918924e-09!GO:0006366;transcription from RNA polymerase II promoter;1.27605224844982e-08!GO:0031965;nuclear membrane;1.50036084805878e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.65202244182537e-08!GO:0006323;DNA packaging;1.73269472266037e-08!GO:0006446;regulation of translational initiation;1.77471522217384e-08!GO:0006913;nucleocytoplasmic transport;1.80677071945368e-08!GO:0043687;post-translational protein modification;1.84231595871375e-08!GO:0012501;programmed cell death;1.97542727430103e-08!GO:0008639;small protein conjugating enzyme activity;2.79115533441784e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.07792260007819e-08!GO:0051169;nuclear transport;3.21147549382707e-08!GO:0048475;coated membrane;3.55456382008244e-08!GO:0030117;membrane coat;3.55456382008244e-08!GO:0051276;chromosome organization and biogenesis;3.57595287767655e-08!GO:0004842;ubiquitin-protein ligase activity;4.09371955928813e-08!GO:0006461;protein complex assembly;4.30832678899854e-08!GO:0006915;apoptosis;4.47438616797579e-08!GO:0009259;ribonucleotide metabolic process;4.6994063165788e-08!GO:0009060;aerobic respiration;4.70290954164287e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.172438717568e-08!GO:0006163;purine nucleotide metabolic process;6.30300404322565e-08!GO:0030120;vesicle coat;6.47092479459894e-08!GO:0030662;coated vesicle membrane;6.47092479459894e-08!GO:0009150;purine ribonucleotide metabolic process;7.45508028327952e-08!GO:0050794;regulation of cellular process;7.7170860116667e-08!GO:0019787;small conjugating protein ligase activity;8.64750145536513e-08!GO:0051726;regulation of cell cycle;9.97622819929383e-08!GO:0045333;cellular respiration;9.97622819929383e-08!GO:0008219;cell death;1.24209811301922e-07!GO:0016265;death;1.24209811301922e-07!GO:0042254;ribosome biogenesis and assembly;1.24532232087639e-07!GO:0016607;nuclear speck;1.27065159458978e-07!GO:0000074;regulation of progression through cell cycle;1.27873167589497e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.29926524395351e-07!GO:0051188;cofactor biosynthetic process;1.49010368300206e-07!GO:0048519;negative regulation of biological process;1.79341191286757e-07!GO:0000278;mitotic cell cycle;1.82959083093217e-07!GO:0005768;endosome;2.02441770102582e-07!GO:0044453;nuclear membrane part;2.41515454589412e-07!GO:0009141;nucleoside triphosphate metabolic process;2.66387494079732e-07!GO:0006164;purine nucleotide biosynthetic process;2.78791299390566e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.91879722385243e-07!GO:0005524;ATP binding;3.07274141419457e-07!GO:0009152;purine ribonucleotide biosynthetic process;3.21763493868077e-07!GO:0032559;adenyl ribonucleotide binding;3.38491771272668e-07!GO:0017038;protein import;3.60281693673556e-07!GO:0015986;ATP synthesis coupled proton transport;3.60281693673556e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.60281693673556e-07!GO:0006974;response to DNA damage stimulus;3.75425039743788e-07!GO:0006099;tricarboxylic acid cycle;4.29096291934165e-07!GO:0046356;acetyl-CoA catabolic process;4.29096291934165e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.46387080895091e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.46387080895091e-07!GO:0030554;adenyl nucleotide binding;5.88697624064962e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.94731396540623e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.94731396540623e-07!GO:0009260;ribonucleotide biosynthetic process;6.06462522086023e-07!GO:0016887;ATPase activity;7.29216637775365e-07!GO:0042623;ATPase activity, coupled;7.72026554359033e-07!GO:0051187;cofactor catabolic process;7.76545693075725e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.81976645387857e-07!GO:0016881;acid-amino acid ligase activity;8.46919917958501e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.26040736091715e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.26040736091715e-07!GO:0006399;tRNA metabolic process;9.36874691755473e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.72757525265683e-07!GO:0004812;aminoacyl-tRNA ligase activity;9.72757525265683e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.72757525265683e-07!GO:0008654;phospholipid biosynthetic process;1.0320806585994e-06!GO:0009109;coenzyme catabolic process;1.05649503109197e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.3428721474673e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.36524163098722e-06!GO:0016491;oxidoreductase activity;1.37242910737385e-06!GO:0006084;acetyl-CoA metabolic process;1.43456099498421e-06!GO:0000139;Golgi membrane;1.43456099498421e-06!GO:0044440;endosomal part;1.5103409796111e-06!GO:0010008;endosome membrane;1.5103409796111e-06!GO:0065002;intracellular protein transport across a membrane;1.676284581532e-06!GO:0031988;membrane-bound vesicle;1.74240543043047e-06!GO:0045786;negative regulation of progression through cell cycle;1.8351030852587e-06!GO:0043038;amino acid activation;1.94150433885751e-06!GO:0006418;tRNA aminoacylation for protein translation;1.94150433885751e-06!GO:0043039;tRNA aminoacylation;1.94150433885751e-06!GO:0009056;catabolic process;2.03407044555516e-06!GO:0065004;protein-DNA complex assembly;2.26061019949938e-06!GO:0046034;ATP metabolic process;2.75397662928905e-06!GO:0031252;leading edge;3.65395397071345e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.47827592369945e-06!GO:0016853;isomerase activity;4.60065429744271e-06!GO:0016564;transcription repressor activity;4.67994312271849e-06!GO:0051246;regulation of protein metabolic process;4.7846382277272e-06!GO:0004386;helicase activity;4.94033731731796e-06!GO:0006754;ATP biosynthetic process;4.96331481472102e-06!GO:0006753;nucleoside phosphate metabolic process;4.96331481472102e-06!GO:0005770;late endosome;5.27027856711468e-06!GO:0050789;regulation of biological process;5.32737592513318e-06!GO:0005773;vacuole;5.59735167160558e-06!GO:0031324;negative regulation of cellular metabolic process;5.69859984863606e-06!GO:0045259;proton-transporting ATP synthase complex;5.77117795188828e-06!GO:0019829;cation-transporting ATPase activity;6.28173095003629e-06!GO:0008026;ATP-dependent helicase activity;6.70628556802996e-06!GO:0009108;coenzyme biosynthetic process;6.84138411828532e-06!GO:0003713;transcription coactivator activity;7.33462043012711e-06!GO:0003924;GTPase activity;8.15701753502572e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.40602764936565e-06!GO:0003714;transcription corepressor activity;8.49637259900055e-06!GO:0031410;cytoplasmic vesicle;8.59960462984382e-06!GO:0016568;chromatin modification;8.88812034099535e-06!GO:0009117;nucleotide metabolic process;9.1197598794558e-06!GO:0031982;vesicle;9.21725532214886e-06!GO:0005798;Golgi-associated vesicle;9.44422777003323e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.44793342356158e-06!GO:0006333;chromatin assembly or disassembly;9.82580082479498e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.18140151869452e-05!GO:0005667;transcription factor complex;1.23883326408828e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.3164682186199e-05!GO:0005643;nuclear pore;1.4914044103201e-05!GO:0016859;cis-trans isomerase activity;1.51974659325121e-05!GO:0006281;DNA repair;1.66306818147243e-05!GO:0016740;transferase activity;1.68195022474074e-05!GO:0046930;pore complex;1.76530643823779e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.97405491422861e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.12338759365383e-05!GO:0009719;response to endogenous stimulus;2.13360016504361e-05!GO:0003697;single-stranded DNA binding;2.18120480199969e-05!GO:0006091;generation of precursor metabolites and energy;2.18573332897693e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.32986083274054e-05!GO:0042981;regulation of apoptosis;2.60792909221264e-05!GO:0043067;regulation of programmed cell death;2.64651097776383e-05!GO:0043069;negative regulation of programmed cell death;2.84208935842164e-05!GO:0045454;cell redox homeostasis;3.09843250242299e-05!GO:0005791;rough endoplasmic reticulum;3.24968337421961e-05!GO:0016563;transcription activator activity;3.30728063394371e-05!GO:0006752;group transfer coenzyme metabolic process;3.54160665666269e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.89232467627361e-05!GO:0006916;anti-apoptosis;3.94948457667701e-05!GO:0043566;structure-specific DNA binding;4.10408114123209e-05!GO:0043066;negative regulation of apoptosis;4.36275938583194e-05!GO:0051427;hormone receptor binding;4.46855148622419e-05!GO:0006364;rRNA processing;4.51206626455786e-05!GO:0032446;protein modification by small protein conjugation;4.51206626455786e-05!GO:0005694;chromosome;4.63551005373245e-05!GO:0000245;spliceosome assembly;4.79546269252768e-05!GO:0004298;threonine endopeptidase activity;4.83536807664047e-05!GO:0051170;nuclear import;4.88187494485757e-05!GO:0007005;mitochondrion organization and biogenesis;4.95551463793327e-05!GO:0006606;protein import into nucleus;5.16618131265143e-05!GO:0030867;rough endoplasmic reticulum membrane;5.25933825124009e-05!GO:0005905;coated pit;5.28036279719842e-05!GO:0006613;cotranslational protein targeting to membrane;5.33075049516134e-05!GO:0009892;negative regulation of metabolic process;5.35184978734358e-05!GO:0030133;transport vesicle;5.35972547238593e-05!GO:0008610;lipid biosynthetic process;5.36376359938154e-05!GO:0030036;actin cytoskeleton organization and biogenesis;5.36496876649017e-05!GO:0000323;lytic vacuole;5.54204306892547e-05!GO:0005764;lysosome;5.54204306892547e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.72214845760026e-05!GO:0000785;chromatin;5.74005450190539e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.93565315014062e-05!GO:0019843;rRNA binding;6.06670199337766e-05!GO:0044427;chromosomal part;6.92861131502273e-05!GO:0006403;RNA localization;7.05759539919592e-05!GO:0016481;negative regulation of transcription;7.15826710958743e-05!GO:0016567;protein ubiquitination;7.17225897287766e-05!GO:0050657;nucleic acid transport;7.87837690967748e-05!GO:0051236;establishment of RNA localization;7.87837690967748e-05!GO:0050658;RNA transport;7.87837690967748e-05!GO:0006260;DNA replication;8.05522656883813e-05!GO:0035257;nuclear hormone receptor binding;8.71371095379389e-05!GO:0016072;rRNA metabolic process;8.78014936318767e-05!GO:0006793;phosphorus metabolic process;8.93615133766462e-05!GO:0006796;phosphate metabolic process;8.93615133766462e-05!GO:0044262;cellular carbohydrate metabolic process;9.54435611888589e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000100728982798634!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000100830332080971!GO:0046474;glycerophospholipid biosynthetic process;0.000107793976507885!GO:0008361;regulation of cell size;0.000113403752458954!GO:0051301;cell division;0.000114992552333329!GO:0016779;nucleotidyltransferase activity;0.00012658025462278!GO:0022403;cell cycle phase;0.00012658025462278!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000131137372614032!GO:0016049;cell growth;0.000136281698804307!GO:0005762;mitochondrial large ribosomal subunit;0.000152434722250139!GO:0000315;organellar large ribosomal subunit;0.000152434722250139!GO:0000151;ubiquitin ligase complex;0.000153654388515459!GO:0006334;nucleosome assembly;0.000175883176825028!GO:0016126;sterol biosynthetic process;0.000186857913252142!GO:0005769;early endosome;0.000217931124008169!GO:0016044;membrane organization and biogenesis;0.000219861559025404!GO:0000087;M phase of mitotic cell cycle;0.000247064776424571!GO:0007067;mitosis;0.000255822122139146!GO:0005581;collagen;0.000258324935334521!GO:0007264;small GTPase mediated signal transduction;0.000259482739149429!GO:0016310;phosphorylation;0.000293470051010456!GO:0019899;enzyme binding;0.000302723767652183!GO:0046467;membrane lipid biosynthetic process;0.000316551256511844!GO:0008250;oligosaccharyl transferase complex;0.000318791149796991!GO:0031497;chromatin assembly;0.000351092429738752!GO:0051789;response to protein stimulus;0.000361504166779916!GO:0006986;response to unfolded protein;0.000361504166779916!GO:0003724;RNA helicase activity;0.000374422633962497!GO:0005525;GTP binding;0.000384484946191023!GO:0030029;actin filament-based process;0.000412336068662074!GO:0051329;interphase of mitotic cell cycle;0.000414793908816923!GO:0015630;microtubule cytoskeleton;0.000487014257458464!GO:0007243;protein kinase cascade;0.000538872804028205!GO:0030132;clathrin coat of coated pit;0.000547606218234444!GO:0043623;cellular protein complex assembly;0.000567768680535171!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000579150996197151!GO:0005048;signal sequence binding;0.000609821246343406!GO:0048522;positive regulation of cellular process;0.000622821077842666!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000648690948439772!GO:0019867;outer membrane;0.000667265048767039!GO:0046489;phosphoinositide biosynthetic process;0.00070789042621528!GO:0001558;regulation of cell growth;0.00070789042621528!GO:0030176;integral to endoplasmic reticulum membrane;0.00077975216787114!GO:0006612;protein targeting to membrane;0.000790027767621856!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000790027767621856!GO:0030118;clathrin coat;0.000806669527680955!GO:0018196;peptidyl-asparagine modification;0.000817019201029052!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000817019201029052!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.000834977443644436!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000871936005991453!GO:0051920;peroxiredoxin activity;0.000881099247429159!GO:0051028;mRNA transport;0.000884553999574148!GO:0006891;intra-Golgi vesicle-mediated transport;0.000914079402205009!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000930131324682095!GO:0030027;lamellipodium;0.000972263072764009!GO:0051325;interphase;0.00107146471570252!GO:0031968;organelle outer membrane;0.0010735613125251!GO:0030134;ER to Golgi transport vesicle;0.00116687692813616!GO:0004576;oligosaccharyl transferase activity;0.00117112275418843!GO:0007010;cytoskeleton organization and biogenesis;0.00126227453106442!GO:0003899;DNA-directed RNA polymerase activity;0.00127203387944572!GO:0006695;cholesterol biosynthetic process;0.00128622949215974!GO:0030663;COPI coated vesicle membrane;0.00133191214812038!GO:0030126;COPI vesicle coat;0.00133191214812038!GO:0016787;hydrolase activity;0.00133885035543197!GO:0005813;centrosome;0.0013394909933312!GO:0019222;regulation of metabolic process;0.00134452784466238!GO:0008286;insulin receptor signaling pathway;0.00135734543131355!GO:0000314;organellar small ribosomal subunit;0.00138512915592591!GO:0005763;mitochondrial small ribosomal subunit;0.00138512915592591!GO:0043021;ribonucleoprotein binding;0.00138512915592591!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00141629791681674!GO:0032561;guanyl ribonucleotide binding;0.00145145137960098!GO:0019001;guanyl nucleotide binding;0.00145145137960098!GO:0008092;cytoskeletal protein binding;0.00160275936214975!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00167984649065771!GO:0030137;COPI-coated vesicle;0.00171164383106749!GO:0005885;Arp2/3 protein complex;0.00184485318229246!GO:0045892;negative regulation of transcription, DNA-dependent;0.00206345647296851!GO:0051101;regulation of DNA binding;0.00217310948143797!GO:0030041;actin filament polymerization;0.00218803445265541!GO:0005741;mitochondrial outer membrane;0.00233950519914587!GO:0065007;biological regulation;0.00234013344638679!GO:0035258;steroid hormone receptor binding;0.00244172937243013!GO:0030521;androgen receptor signaling pathway;0.00244172937243013!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0024816332010013!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0024816332010013!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0024816332010013!GO:0045941;positive regulation of transcription;0.00270721504852829!GO:0031902;late endosome membrane;0.00274873144733062!GO:0007050;cell cycle arrest;0.0027652645523149!GO:0030127;COPII vesicle coat;0.00290666982119526!GO:0012507;ER to Golgi transport vesicle membrane;0.00290666982119526!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00290727371204767!GO:0006979;response to oxidative stress;0.00302210781455247!GO:0008186;RNA-dependent ATPase activity;0.00303066892365442!GO:0044420;extracellular matrix part;0.00307256425613354!GO:0030658;transport vesicle membrane;0.0031411108999768!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00342042515612781!GO:0006414;translational elongation;0.0034917578610801!GO:0006650;glycerophospholipid metabolic process;0.00364680774321599!GO:0016125;sterol metabolic process;0.00369245855546369!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00376113236322664!GO:0009165;nucleotide biosynthetic process;0.00378661440857947!GO:0045893;positive regulation of transcription, DNA-dependent;0.00382124816636305!GO:0005815;microtubule organizing center;0.00388718312117441!GO:0007040;lysosome organization and biogenesis;0.00400573981176872!GO:0051168;nuclear export;0.00405708108705864!GO:0030119;AP-type membrane coat adaptor complex;0.00411899580664736!GO:0065009;regulation of a molecular function;0.00415788492323989!GO:0043681;protein import into mitochondrion;0.00438821458057303!GO:0043488;regulation of mRNA stability;0.00441018019424637!GO:0043487;regulation of RNA stability;0.00441018019424637!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00450108824318536!GO:0015399;primary active transmembrane transporter activity;0.00450108824318536!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00479915277437248!GO:0005100;Rho GTPase activator activity;0.00492711814250347!GO:0031072;heat shock protein binding;0.00514264340619704!GO:0033673;negative regulation of kinase activity;0.00523902636096524!GO:0006469;negative regulation of protein kinase activity;0.00523902636096524!GO:0006740;NADPH regeneration;0.00531981107270247!GO:0006098;pentose-phosphate shunt;0.00531981107270247!GO:0006402;mRNA catabolic process;0.00531981107270247!GO:0007033;vacuole organization and biogenesis;0.00559623613826851!GO:0003729;mRNA binding;0.00561957222407982!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00561957222407982!GO:0005774;vacuolar membrane;0.00577875395990508!GO:0016197;endosome transport;0.00578482584389251!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0059015553612089!GO:0051348;negative regulation of transferase activity;0.00614992026174403!GO:0008047;enzyme activator activity;0.00616419010094258!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00635693354014029!GO:0051252;regulation of RNA metabolic process;0.00643051595154996!GO:0048500;signal recognition particle;0.00656736355128426!GO:0043284;biopolymer biosynthetic process;0.00657485792116927!GO:0017166;vinculin binding;0.00661543727031879!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00669151662462975!GO:0006066;alcohol metabolic process;0.00679155232336696!GO:0030384;phosphoinositide metabolic process;0.00686016953580237!GO:0008154;actin polymerization and/or depolymerization;0.006994242381566!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00717184170551236!GO:0030131;clathrin adaptor complex;0.00724689541594007!GO:0001726;ruffle;0.00732040000396834!GO:0042158;lipoprotein biosynthetic process;0.00745126635148298!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00749468147221916!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00749468147221916!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00758245821460542!GO:0048487;beta-tubulin binding;0.00764065420871705!GO:0004004;ATP-dependent RNA helicase activity;0.00764065420871705!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00767329348741777!GO:0040008;regulation of growth;0.00794551127128178!GO:0005684;U2-dependent spliceosome;0.00796414363893071!GO:0007265;Ras protein signal transduction;0.00803869249435052!GO:0030880;RNA polymerase complex;0.00810400314435042!GO:0000279;M phase;0.00817595185832907!GO:0016363;nuclear matrix;0.00823954096659078!GO:0051098;regulation of binding;0.0087207356933584!GO:0005869;dynactin complex;0.00872482873772536!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00872482873772536!GO:0007006;mitochondrial membrane organization and biogenesis;0.00872482873772536!GO:0005096;GTPase activator activity;0.00872482873772536!GO:0006506;GPI anchor biosynthetic process;0.00890577518407236!GO:0030659;cytoplasmic vesicle membrane;0.00899039895665602!GO:0030660;Golgi-associated vesicle membrane;0.00920877303289473!GO:0048471;perinuclear region of cytoplasm;0.00940285160624738!GO:0016860;intramolecular oxidoreductase activity;0.00961953133881986!GO:0006509;membrane protein ectodomain proteolysis;0.00962303170066005!GO:0033619;membrane protein proteolysis;0.00962303170066005!GO:0006497;protein amino acid lipidation;0.0101973039000412!GO:0051287;NAD binding;0.0104199926843897!GO:0031543;peptidyl-proline dioxygenase activity;0.0106096557941838!GO:0006505;GPI anchor metabolic process;0.0111724304943502!GO:0050681;androgen receptor binding;0.0119588244114782!GO:0009966;regulation of signal transduction;0.0119715906735634!GO:0019798;procollagen-proline dioxygenase activity;0.0119853853258802!GO:0006643;membrane lipid metabolic process;0.0120539430054293!GO:0030518;steroid hormone receptor signaling pathway;0.0120572163031699!GO:0006082;organic acid metabolic process;0.0122825735854739!GO:0031272;regulation of pseudopodium formation;0.0122825735854739!GO:0031269;pseudopodium formation;0.0122825735854739!GO:0031344;regulation of cell projection organization and biogenesis;0.0122825735854739!GO:0031268;pseudopodium organization and biogenesis;0.0122825735854739!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0122825735854739!GO:0031274;positive regulation of pseudopodium formation;0.0122825735854739!GO:0019752;carboxylic acid metabolic process;0.0125009491954284!GO:0006626;protein targeting to mitochondrion;0.0125009491954284!GO:0006839;mitochondrial transport;0.0126950598038123!GO:0022890;inorganic cation transmembrane transporter activity;0.0127252552266294!GO:0043407;negative regulation of MAP kinase activity;0.0137206792801405!GO:0005583;fibrillar collagen;0.0138528860161372!GO:0003711;transcription elongation regulator activity;0.0138528860161372!GO:0031901;early endosome membrane;0.0139444590326026!GO:0008139;nuclear localization sequence binding;0.0142025541610055!GO:0005862;muscle thin filament tropomyosin;0.0142496481177948!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0143965386607403!GO:0045047;protein targeting to ER;0.0143965386607403!GO:0006897;endocytosis;0.0145851698094591!GO:0010324;membrane invagination;0.0145851698094591!GO:0006595;polyamine metabolic process;0.0146699457285339!GO:0045045;secretory pathway;0.0148310121481824!GO:0044437;vacuolar part;0.0149114537440184!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0149426320976419!GO:0006644;phospholipid metabolic process;0.0150104259481657!GO:0005765;lysosomal membrane;0.0150181419286754!GO:0044433;cytoplasmic vesicle part;0.0151383077851301!GO:0005586;collagen type III;0.015143053199162!GO:0003684;damaged DNA binding;0.0154249991447314!GO:0006892;post-Golgi vesicle-mediated transport;0.0155092151512072!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0158026344567323!GO:0000428;DNA-directed RNA polymerase complex;0.0158026344567323!GO:0048518;positive regulation of biological process;0.0158026344567323!GO:0006383;transcription from RNA polymerase III promoter;0.0162942344515175!GO:0051128;regulation of cellular component organization and biogenesis;0.0162991425479001!GO:0006818;hydrogen transport;0.0165448233042253!GO:0045334;clathrin-coated endocytic vesicle;0.0166548242476915!GO:0051087;chaperone binding;0.0168585444986556!GO:0042802;identical protein binding;0.0170927472599191!GO:0015992;proton transport;0.0173418332576967!GO:0030125;clathrin vesicle coat;0.0181888370488359!GO:0030665;clathrin coated vesicle membrane;0.0181888370488359!GO:0006778;porphyrin metabolic process;0.0182077600217955!GO:0033013;tetrapyrrole metabolic process;0.0182077600217955!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0182832941347236!GO:0015002;heme-copper terminal oxidase activity;0.0182832941347236!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0182832941347236!GO:0004129;cytochrome-c oxidase activity;0.0182832941347236!GO:0050662;coenzyme binding;0.0182832941347236!GO:0006739;NADP metabolic process;0.0187086986970455!GO:0000096;sulfur amino acid metabolic process;0.0187201629044832!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0189884922843956!GO:0005637;nuclear inner membrane;0.0193071755805699!GO:0008312;7S RNA binding;0.0193071755805699!GO:0035035;histone acetyltransferase binding;0.0193115907965217!GO:0043492;ATPase activity, coupled to movement of substances;0.0193581248100293!GO:0006790;sulfur metabolic process;0.0194183933872236!GO:0003690;double-stranded DNA binding;0.0196491286289818!GO:0031418;L-ascorbic acid binding;0.0199793907520602!GO:0006352;transcription initiation;0.0201542558328085!GO:0006769;nicotinamide metabolic process;0.0201542558328085!GO:0009967;positive regulation of signal transduction;0.0202927846117806!GO:0016408;C-acyltransferase activity;0.020972463840324!GO:0031529;ruffle organization and biogenesis;0.0215259555155815!GO:0005606;laminin-1 complex;0.0215291068781768!GO:0003756;protein disulfide isomerase activity;0.021816265882276!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.021816265882276!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0223210986880248!GO:0005083;small GTPase regulator activity;0.0227003532351035!GO:0005099;Ras GTPase activator activity;0.0227222936821289!GO:0004177;aminopeptidase activity;0.0228309904566338!GO:0046483;heterocycle metabolic process;0.0231142928511508!GO:0045185;maintenance of protein localization;0.0235394347801777!GO:0030128;clathrin coat of endocytic vesicle;0.0236045624528866!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0236045624528866!GO:0030122;AP-2 adaptor complex;0.0236045624528866!GO:0004860;protein kinase inhibitor activity;0.0236206752315603!GO:0030833;regulation of actin filament polymerization;0.0236206752315603!GO:0000339;RNA cap binding;0.0236206752315603!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0237665921539512!GO:0042168;heme metabolic process;0.024810820379263!GO:0006767;water-soluble vitamin metabolic process;0.0248710897010718!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0256390804490346!GO:0032507;maintenance of cellular protein localization;0.0262292414388199!GO:0031124;mRNA 3'-end processing;0.0267685352991879!GO:0006401;RNA catabolic process;0.02788087451558!GO:0031625;ubiquitin protein ligase binding;0.0279184039762104!GO:0033559;unsaturated fatty acid metabolic process;0.0282291740991261!GO:0006636;unsaturated fatty acid biosynthetic process;0.0282291740991261!GO:0006289;nucleotide-excision repair;0.0282291740991261!GO:0003682;chromatin binding;0.0286267708155023!GO:0044255;cellular lipid metabolic process;0.0293295053762298!GO:0008203;cholesterol metabolic process;0.0295554290423549!GO:0000049;tRNA binding;0.029558592872553!GO:0050811;GABA receptor binding;0.0299480080059948!GO:0006733;oxidoreduction coenzyme metabolic process;0.0309780859768407!GO:0000059;protein import into nucleus, docking;0.0309780859768407!GO:0051539;4 iron, 4 sulfur cluster binding;0.0310998974003797!GO:0015631;tubulin binding;0.0314374464563522!GO:0001666;response to hypoxia;0.0315342181659302!GO:0031301;integral to organelle membrane;0.0315922711231809!GO:0012506;vesicle membrane;0.0318507211482479!GO:0030433;ER-associated protein catabolic process;0.0332212367505937!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0332212367505937!GO:0008652;amino acid biosynthetic process;0.0333536206982498!GO:0051235;maintenance of localization;0.0337093022075104!GO:0045792;negative regulation of cell size;0.0337117192524733!GO:0008147;structural constituent of bone;0.0337117192524733!GO:0004185;serine carboxypeptidase activity;0.0344865506888047!GO:0019318;hexose metabolic process;0.0344865506888047!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0346570867105268!GO:0006779;porphyrin biosynthetic process;0.0348189374193836!GO:0033014;tetrapyrrole biosynthetic process;0.0348189374193836!GO:0005996;monosaccharide metabolic process;0.0351757776779191!GO:0031323;regulation of cellular metabolic process;0.0351813261221448!GO:0030522;intracellular receptor-mediated signaling pathway;0.0355065688558193!GO:0000209;protein polyubiquitination;0.0361849259036348!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0373749080837654!GO:0016272;prefoldin complex;0.0382769030614183!GO:0007160;cell-matrix adhesion;0.0382769030614183!GO:0051540;metal cluster binding;0.0387421194091491!GO:0051536;iron-sulfur cluster binding;0.0387421194091491!GO:0044452;nucleolar part;0.0394320221512375!GO:0006611;protein export from nucleus;0.0398414114897339!GO:0030308;negative regulation of cell growth;0.0398414114897339!GO:0003678;DNA helicase activity;0.0403235157994471!GO:0005832;chaperonin-containing T-complex;0.0403529095482541!GO:0003779;actin binding;0.0404281337447156!GO:0015036;disulfide oxidoreductase activity;0.0404469664622235!GO:0030508;thiol-disulfide exchange intermediate activity;0.0411994933376583!GO:0006118;electron transport;0.0414219671385307!GO:0030031;cell projection biogenesis;0.0422585491396287!GO:0046488;phosphatidylinositol metabolic process;0.0428067202074785!GO:0008632;apoptotic program;0.0432684213992551!GO:0007021;tubulin folding;0.0433423514307633!GO:0007034;vacuolar transport;0.0439784637482236!GO:0006007;glucose catabolic process;0.0449716954047579!GO:0016407;acetyltransferase activity;0.0451386255058639!GO:0006520;amino acid metabolic process;0.0453026386292811!GO:0005819;spindle;0.0466547239038587!GO:0006783;heme biosynthetic process;0.0470822522417976!GO:0005588;collagen type V;0.0473307385729645!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0474441497575778!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0474441497575778!GO:0046822;regulation of nucleocytoplasmic transport;0.0477369046080766!GO:0031589;cell-substrate adhesion;0.047757214018029!GO:0032906;transforming growth factor-beta2 production;0.047757214018029!GO:0032909;regulation of transforming growth factor-beta2 production;0.047757214018029!GO:0008033;tRNA processing;0.047757214018029!GO:0000786;nucleosome;0.0479621534635536!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.048169977669797!GO:0000082;G1/S transition of mitotic cell cycle;0.0493297233489719!GO:0043022;ribosome binding;0.0497934562298115 | |||
|sample_id=11492 | |sample_id=11492 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=choroid plexus | |sample_tissue=choroid plexus | ||
|top_motifs=TAL1_TCF{3,4,12}:2.11633904586;TFAP4:1.88175865451;PAX1,9:1.80315073761;EBF1:1.71868170798;ZNF238:1.71672644747;NKX2-1,4:1.41407155959;NANOG{mouse}:1.37094775753;MAZ:1.15668219687;DBP:1.14262810363;ATF6:1.11862421652;HOX{A5,B5}:1.10733142241;TFCP2:1.07445224109;GTF2A1,2:1.06910889667;MYBL2:1.00853275921;RXRA_VDR{dimer}:0.995274535395;GFI1B:0.980897420566;EN1,2:0.980761846142;PATZ1:0.963042211345;ZIC1..3:0.956488040084;GZF1:0.954107376452;TEAD1:0.952323674003;AR:0.899598083443;NKX3-1:0.887096995224;GTF2I:0.868877179667;BPTF:0.825829663647;GFI1:0.825573962888;SP1:0.816690201305;SPZ1:0.804765388667;TLX1..3_NFIC{dimer}:0.802219338586;SOX5:0.782583250668;LEF1_TCF7_TCF7L1,2:0.76399540182;GLI1..3:0.761904828488;HAND1,2:0.748465471294;NR3C1:0.744533692567;HES1:0.739793913422;PAX5:0.729841612207;HMGA1,2:0.721769180611;NFATC1..3:0.690379259805;ZNF423:0.662258734207;IKZF1:0.65299187375;MZF1:0.636427787319;LHX3,4:0.623912238462;TFAP2{A,C}:0.579496085515;XCPE1{core}:0.565300770431;SRF:0.560654503138;CRX:0.556158252107;NFE2L2:0.551447967962;HIC1:0.490803464657;POU3F1..4:0.474229446153;NANOG:0.45168522808;TBX4,5:0.446777910813;TFAP2B:0.439611639341;XBP1:0.437480035508;STAT2,4,6:0.434812744724;ZBTB6:0.433517667235;MYFfamily:0.420678385474;NHLH1,2:0.405295893466;RXR{A,B,G}:0.404623405815;KLF4:0.37769167111;ESR1:0.377054704646;STAT1,3:0.369415882192;ALX4:0.361690178839;MED-1{core}:0.353714455714;RBPJ:0.331807873989;MTE{core}:0.320183567574;PDX1:0.292113068802;RREB1:0.264353682327;SOX17:0.258399401244;ZNF148:0.250022211591;HNF4A_NR2F1,2:0.247027040373;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.236831486261;PAX4:0.234313755788;STAT5{A,B}:0.225899513434;ESRRA:0.222543767;FOXD3:0.221157910865;PRDM1:0.216266543626;bHLH_family:0.211534182185;NR5A1,2:0.209904939182;NRF1:0.206990112545;ZNF384:0.186996664405;UFEwm:0.160383077309;NR6A1:0.157894861748;NFE2L1:0.151333013903;FOXM1:0.150582724101;PAX8:0.137516242452;CDC5L:0.13253268599;NKX2-2,8:0.130295758963;RORA:0.126559717624;T:0.122921749719;TBP:0.115204832102;NKX2-3_NKX2-5:0.105047473818;NFY{A,B,C}:0.104595131292;HOX{A6,A7,B6,B7}:0.1000074661;POU6F1:0.0984819884978;VSX1,2:0.0930912183756;FOXO1,3,4:0.0901644789228;TP53:0.0880630669467;HIF1A:0.085504979808;TEF:0.0828413140924;HMX1:0.0788747961343;ONECUT1,2:0.0751344236736;EP300:0.0745687752958;SOX2:0.0668656414806;HSF1,2:0.0544365781034;HBP1_HMGB_SSRP1_UBTF:0.0448876749348;HNF1A:0.0423671853541;ZFP161:0.0292741633221;NKX6-1,2:0.0282607178898;HLF:0.0241139866306;EGR1..3:0.0155100899003;FOX{D1,D2}:0.0145810000998;FOXA2:-0.0142993399967;ZNF143:-0.028542082147;AIRE:-0.0311546766955;SOX{8,9,10}:-0.0560701196593;GATA6:-0.0619021919808;MEF2{A,B,C,D}:-0.0629713311932;MAFB:-0.0708833222061;TGIF1:-0.0826619544787;ADNP_IRX_SIX_ZHX:-0.0992966777743;PBX1:-0.102167776485;NFIL3:-0.103157540317;RFX1:-0.108001052737;ELK1,4_GABP{A,B1}:-0.118704625778;REST:-0.126604348728;YY1:-0.127082079135;PRRX1,2:-0.127322697268;AHR_ARNT_ARNT2:-0.127480233545;ETS1,2:-0.128570209943;TFDP1:-0.153605303544;ELF1,2,4:-0.158775076855;POU5F1:-0.18604393724;FOS_FOS{B,L1}_JUN{B,D}:-0.198853922159;FOXL1:-0.202293421695;BACH2:-0.20936497012;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.213304958721;FOSL2:-0.216463556964;SMAD1..7,9:-0.236873310749;PAX2:-0.238319446807;MTF1:-0.25014001144;TOPORS:-0.260722474902;EVI1:-0.26390060858;RUNX1..3:-0.267640781313;FOXP3:-0.278628196057;SREBF1,2:-0.287555563829;PAX3,7:-0.301436355404;OCT4_SOX2{dimer}:-0.30263025258;POU1F1:-0.315611089018;FOX{I1,J2}:-0.328973911206;GATA4:-0.333187577346;NFE2:-0.338100889214;CEBPA,B_DDIT3:-0.344463973788;NFKB1_REL_RELA:-0.348672840616;MYB:-0.354549773578;FOXQ1:-0.382488624619;BREu{core}:-0.384453440287;TLX2:-0.403307155314;NKX3-2:-0.424323155206;JUN:-0.438298435427;IRF1,2:-0.450499778673;NFIX:-0.452486614142;IRF7:-0.467644289973;SNAI1..3:-0.470469350826;HOX{A4,D4}:-0.471884860854;SPIB:-0.480748401222;NR1H4:-0.536095416586;SPI1:-0.548006740998;E2F1..5:-0.548166101614;DMAP1_NCOR{1,2}_SMARC:-0.564658264513;CUX2:-0.642219879573;FOX{F1,F2,J1}:-0.655272228206;FOXP1:-0.659887333102;LMO2:-0.673928762719;PAX6:-0.675390870778;POU2F1..3:-0.682815646386;RFX2..5_RFXANK_RFXAP:-0.688210420571;ATF4:-0.745581273903;ATF5_CREB3:-0.751528560136;ARID5B:-0.766934241148;CDX1,2,4:-0.776366958632;ALX1:-0.778770516749;CREB1:-0.800932218915;ATF2:-0.829117273378;GCM1,2:-0.92441367432;FOXN1:-0.937419827528;PPARG:-0.944322808539;ZEB1:-1.01425160093;HOXA9_MEIS1:-1.06318822434;MYOD1:-1.0973080291;PITX1..3:-1.29808223487;ZBTB16:-1.32703890499;IKZF2:-1.4587373916 | |top_motifs=TAL1_TCF{3,4,12}:2.11633904586;TFAP4:1.88175865451;PAX1,9:1.80315073761;EBF1:1.71868170798;ZNF238:1.71672644747;NKX2-1,4:1.41407155959;NANOG{mouse}:1.37094775753;MAZ:1.15668219687;DBP:1.14262810363;ATF6:1.11862421652;HOX{A5,B5}:1.10733142241;TFCP2:1.07445224109;GTF2A1,2:1.06910889667;MYBL2:1.00853275921;RXRA_VDR{dimer}:0.995274535395;GFI1B:0.980897420566;EN1,2:0.980761846142;PATZ1:0.963042211345;ZIC1..3:0.956488040084;GZF1:0.954107376452;TEAD1:0.952323674003;AR:0.899598083443;NKX3-1:0.887096995224;GTF2I:0.868877179667;BPTF:0.825829663647;GFI1:0.825573962888;SP1:0.816690201305;SPZ1:0.804765388667;TLX1..3_NFIC{dimer}:0.802219338586;SOX5:0.782583250668;LEF1_TCF7_TCF7L1,2:0.76399540182;GLI1..3:0.761904828488;HAND1,2:0.748465471294;NR3C1:0.744533692567;HES1:0.739793913422;PAX5:0.729841612207;HMGA1,2:0.721769180611;NFATC1..3:0.690379259805;ZNF423:0.662258734207;IKZF1:0.65299187375;MZF1:0.636427787319;LHX3,4:0.623912238462;TFAP2{A,C}:0.579496085515;XCPE1{core}:0.565300770431;SRF:0.560654503138;CRX:0.556158252107;NFE2L2:0.551447967962;HIC1:0.490803464657;POU3F1..4:0.474229446153;NANOG:0.45168522808;TBX4,5:0.446777910813;TFAP2B:0.439611639341;XBP1:0.437480035508;STAT2,4,6:0.434812744724;ZBTB6:0.433517667235;MYFfamily:0.420678385474;NHLH1,2:0.405295893466;RXR{A,B,G}:0.404623405815;KLF4:0.37769167111;ESR1:0.377054704646;STAT1,3:0.369415882192;ALX4:0.361690178839;MED-1{core}:0.353714455714;RBPJ:0.331807873989;MTE{core}:0.320183567574;PDX1:0.292113068802;RREB1:0.264353682327;SOX17:0.258399401244;ZNF148:0.250022211591;HNF4A_NR2F1,2:0.247027040373;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.236831486261;PAX4:0.234313755788;STAT5{A,B}:0.225899513434;ESRRA:0.222543767;FOXD3:0.221157910865;PRDM1:0.216266543626;bHLH_family:0.211534182185;NR5A1,2:0.209904939182;NRF1:0.206990112545;ZNF384:0.186996664405;UFEwm:0.160383077309;NR6A1:0.157894861748;NFE2L1:0.151333013903;FOXM1:0.150582724101;PAX8:0.137516242452;CDC5L:0.13253268599;NKX2-2,8:0.130295758963;RORA:0.126559717624;T:0.122921749719;TBP:0.115204832102;NKX2-3_NKX2-5:0.105047473818;NFY{A,B,C}:0.104595131292;HOX{A6,A7,B6,B7}:0.1000074661;POU6F1:0.0984819884978;VSX1,2:0.0930912183756;FOXO1,3,4:0.0901644789228;TP53:0.0880630669467;HIF1A:0.085504979808;TEF:0.0828413140924;HMX1:0.0788747961343;ONECUT1,2:0.0751344236736;EP300:0.0745687752958;SOX2:0.0668656414806;HSF1,2:0.0544365781034;HBP1_HMGB_SSRP1_UBTF:0.0448876749348;HNF1A:0.0423671853541;ZFP161:0.0292741633221;NKX6-1,2:0.0282607178898;HLF:0.0241139866306;EGR1..3:0.0155100899003;FOX{D1,D2}:0.0145810000998;FOXA2:-0.0142993399967;ZNF143:-0.028542082147;AIRE:-0.0311546766955;SOX{8,9,10}:-0.0560701196593;GATA6:-0.0619021919808;MEF2{A,B,C,D}:-0.0629713311932;MAFB:-0.0708833222061;TGIF1:-0.0826619544787;ADNP_IRX_SIX_ZHX:-0.0992966777743;PBX1:-0.102167776485;NFIL3:-0.103157540317;RFX1:-0.108001052737;ELK1,4_GABP{A,B1}:-0.118704625778;REST:-0.126604348728;YY1:-0.127082079135;PRRX1,2:-0.127322697268;AHR_ARNT_ARNT2:-0.127480233545;ETS1,2:-0.128570209943;TFDP1:-0.153605303544;ELF1,2,4:-0.158775076855;POU5F1:-0.18604393724;FOS_FOS{B,L1}_JUN{B,D}:-0.198853922159;FOXL1:-0.202293421695;BACH2:-0.20936497012;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.213304958721;FOSL2:-0.216463556964;SMAD1..7,9:-0.236873310749;PAX2:-0.238319446807;MTF1:-0.25014001144;TOPORS:-0.260722474902;EVI1:-0.26390060858;RUNX1..3:-0.267640781313;FOXP3:-0.278628196057;SREBF1,2:-0.287555563829;PAX3,7:-0.301436355404;OCT4_SOX2{dimer}:-0.30263025258;POU1F1:-0.315611089018;FOX{I1,J2}:-0.328973911206;GATA4:-0.333187577346;NFE2:-0.338100889214;CEBPA,B_DDIT3:-0.344463973788;NFKB1_REL_RELA:-0.348672840616;MYB:-0.354549773578;FOXQ1:-0.382488624619;BREu{core}:-0.384453440287;TLX2:-0.403307155314;NKX3-2:-0.424323155206;JUN:-0.438298435427;IRF1,2:-0.450499778673;NFIX:-0.452486614142;IRF7:-0.467644289973;SNAI1..3:-0.470469350826;HOX{A4,D4}:-0.471884860854;SPIB:-0.480748401222;NR1H4:-0.536095416586;SPI1:-0.548006740998;E2F1..5:-0.548166101614;DMAP1_NCOR{1,2}_SMARC:-0.564658264513;CUX2:-0.642219879573;FOX{F1,F2,J1}:-0.655272228206;FOXP1:-0.659887333102;LMO2:-0.673928762719;PAX6:-0.675390870778;POU2F1..3:-0.682815646386;RFX2..5_RFXANK_RFXAP:-0.688210420571;ATF4:-0.745581273903;ATF5_CREB3:-0.751528560136;ARID5B:-0.766934241148;CDX1,2,4:-0.776366958632;ALX1:-0.778770516749;CREB1:-0.800932218915;ATF2:-0.829117273378;GCM1,2:-0.92441367432;FOXN1:-0.937419827528;PPARG:-0.944322808539;ZEB1:-1.01425160093;HOXA9_MEIS1:-1.06318822434;MYOD1:-1.0973080291;PITX1..3:-1.29808223487;ZBTB16:-1.32703890499;IKZF2:-1.4587373916 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11492-119E7;search_select_hide=table117:FF:11492-119E7 | |||
}} | }} | ||
Latest revision as of 18:04, 4 June 2020
| Name: | Fibroblast - Choroid Plexus, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11319 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11319
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11319
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.013 |
| 10 | 10 | 0.00457 |
| 100 | 100 | 0.32 |
| 101 | 101 | 0.294 |
| 102 | 102 | 0.0427 |
| 103 | 103 | 0.73 |
| 104 | 104 | 0.492 |
| 105 | 105 | 0.209 |
| 106 | 106 | 0.359 |
| 107 | 107 | 0.424 |
| 108 | 108 | 0.815 |
| 109 | 109 | 0.266 |
| 11 | 11 | 0.519 |
| 110 | 110 | 0.929 |
| 111 | 111 | 0.0884 |
| 112 | 112 | 0.229 |
| 113 | 113 | 0.301 |
| 114 | 114 | 0.497 |
| 115 | 115 | 0.512 |
| 116 | 116 | 0.74 |
| 117 | 117 | 0.105 |
| 118 | 118 | 0.281 |
| 119 | 119 | 0.274 |
| 12 | 12 | 0.216 |
| 120 | 120 | 0.607 |
| 121 | 121 | 0.993 |
| 122 | 122 | 0.0756 |
| 123 | 123 | 1.01455e-5 |
| 124 | 124 | 0.903 |
| 125 | 125 | 0.026 |
| 126 | 126 | 0.621 |
| 127 | 127 | 0.195 |
| 128 | 128 | 0.57 |
| 129 | 129 | 0.701 |
| 13 | 13 | 0.238 |
| 130 | 130 | 0.243 |
| 131 | 131 | 0.173 |
| 132 | 132 | 0.206 |
| 133 | 133 | 0.715 |
| 134 | 134 | 0.107 |
| 135 | 135 | 0.582 |
| 136 | 136 | 0.378 |
| 137 | 137 | 0.0198 |
| 138 | 138 | 0.554 |
| 139 | 139 | 0.323 |
| 14 | 14 | 0.715 |
| 140 | 140 | 0.235 |
| 141 | 141 | 0.623 |
| 142 | 142 | 0.536 |
| 143 | 143 | 0.683 |
| 144 | 144 | 0.762 |
| 145 | 145 | 0.806 |
| 146 | 146 | 0.0485 |
| 147 | 147 | 0.283 |
| 148 | 148 | 0.54 |
| 149 | 149 | 0.343 |
| 15 | 15 | 0.101 |
| 150 | 150 | 0.913 |
| 151 | 151 | 0.297 |
| 152 | 152 | 0.796 |
| 153 | 153 | 0.312 |
| 154 | 154 | 0.0215 |
| 155 | 155 | 0.0925 |
| 156 | 156 | 0.708 |
| 157 | 157 | 0.684 |
| 158 | 158 | 0.0621 |
| 159 | 159 | 0.861 |
| 16 | 16 | 0.804 |
| 160 | 160 | 0.824 |
| 161 | 161 | 0.824 |
| 162 | 162 | 0.595 |
| 163 | 163 | 0.536 |
| 164 | 164 | 0.135 |
| 165 | 165 | 0.386 |
| 166 | 166 | 0.315 |
| 167 | 167 | 0.0297 |
| 168 | 168 | 0.807 |
| 169 | 169 | 0.153 |
| 17 | 17 | 0.828 |
| 18 | 18 | 0.719 |
| 19 | 19 | 0.17 |
| 2 | 2 | 0.317 |
| 20 | 20 | 0.354 |
| 21 | 21 | 0.665 |
| 22 | 22 | 0.412 |
| 23 | 23 | 0.925 |
| 24 | 24 | 0.707 |
| 25 | 25 | 0.294 |
| 26 | 26 | 0.484 |
| 27 | 27 | 0.611 |
| 28 | 28 | 0.246 |
| 29 | 29 | 0.32 |
| 3 | 3 | 0.501 |
| 30 | 30 | 0.0877 |
| 31 | 31 | 0.755 |
| 32 | 32 | 4.48575e-11 |
| 33 | 33 | 0.247 |
| 34 | 34 | 0.225 |
| 35 | 35 | 0.438 |
| 36 | 36 | 0.0353 |
| 37 | 37 | 0.397 |
| 38 | 38 | 0.839 |
| 39 | 39 | 0.564 |
| 4 | 4 | 0.423 |
| 40 | 40 | 0.312 |
| 41 | 41 | 0.193 |
| 42 | 42 | 0.599 |
| 43 | 43 | 0.401 |
| 44 | 44 | 0.695 |
| 45 | 45 | 0.328 |
| 46 | 46 | 0.324 |
| 47 | 47 | 0.37 |
| 48 | 48 | 0.723 |
| 49 | 49 | 0.275 |
| 5 | 5 | 0.675 |
| 50 | 50 | 0.608 |
| 51 | 51 | 0.764 |
| 52 | 52 | 0.744 |
| 53 | 53 | 0.11 |
| 54 | 54 | 0.862 |
| 55 | 55 | 0.712 |
| 56 | 56 | 0.901 |
| 57 | 57 | 0.395 |
| 58 | 58 | 0.116 |
| 59 | 59 | 0.24 |
| 6 | 6 | 0.24 |
| 60 | 60 | 0.369 |
| 61 | 61 | 0.317 |
| 62 | 62 | 0.119 |
| 63 | 63 | 0.41 |
| 64 | 64 | 0.575 |
| 65 | 65 | 0.783 |
| 66 | 66 | 0.822 |
| 67 | 67 | 0.537 |
| 68 | 68 | 0.456 |
| 69 | 69 | 0.329 |
| 7 | 7 | 0.497 |
| 70 | 70 | 0.262 |
| 71 | 71 | 0.255 |
| 72 | 72 | 0.561 |
| 73 | 73 | 0.876 |
| 74 | 74 | 0.279 |
| 75 | 75 | 0.0635 |
| 76 | 76 | 0.0543 |
| 77 | 77 | 0.339 |
| 78 | 78 | 0.467 |
| 79 | 79 | 0.131 |
| 8 | 8 | 0.905 |
| 80 | 80 | 0.54 |
| 81 | 81 | 0.69 |
| 82 | 82 | 0.625 |
| 83 | 83 | 0.763 |
| 84 | 84 | 0.248 |
| 85 | 85 | 0.924 |
| 86 | 86 | 0.657 |
| 87 | 87 | 0.405 |
| 88 | 88 | 0.715 |
| 89 | 89 | 0.668 |
| 9 | 9 | 0.322 |
| 90 | 90 | 0.00778 |
| 91 | 91 | 0.306 |
| 92 | 92 | 0.624 |
| 93 | 93 | 0.846 |
| 94 | 94 | 0.41 |
| 95 | 95 | 0.0181 |
| 96 | 96 | 0.119 |
| 97 | 97 | 0.597 |
| 98 | 98 | 0.721 |
| 99 | 99 | 0.00323 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11319
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000060 human fibroblast of choroid plexus sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002549 (fibroblast of choroid plexus)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005284 (brain vasculature)
0005629 (vascular plexus)
0002049 (vasculature)
0006876 (vasculature of organ)
0005358 (ventricle of nervous system)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001017 (central nervous system)
0001886 (choroid plexus)
0001016 (nervous system)
0004535 (cardiovascular system)
0004086 (brain ventricle)
0005282 (ventricular system of brain)
0001009 (circulatory system)
0005281 (ventricular system of central nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000060 (human fibroblast of choroid plexus sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
