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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005763
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|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005763
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|accession_numbers_RNASeq=sRNA-Seq;DRX037056;DRR041422;DRZ007064
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|fonse_treatment_closure=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor1.CNhs11321.11500-119F6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Astrocyte%2520-%2520cerebellum%252c%2520donor1.CNhs11321.11500-119F6.hg38.nobarcode.bam
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|id=FF:11500-119F6
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|library_id=CNhs11321
|library_id=CNhs11321
|library_id_phase_based=2:CNhs11321
|library_id_phase_based=2:CNhs11321
|microRNAs=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.TTAGGC.11500
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11500
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.TTAGGC.11500
|name=Astrocyte - cerebellum, donor1
|name=Astrocyte - cerebellum, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|sample_category=primary cells
Line 92: Line 106:
|top_motifs=GFI1:2.198589542;PBX1:1.75809496165;SOX{8,9,10}:1.41285396199;GTF2A1,2:1.38333002687;NFY{A,B,C}:1.38078413304;EBF1:1.36589979293;LEF1_TCF7_TCF7L1,2:1.34591039856;XCPE1{core}:1.31675025716;ZIC1..3:1.18592481417;MZF1:1.1273360465;POU5F1:1.08756242091;LHX3,4:0.990933374529;TLX1..3_NFIC{dimer}:0.984632928285;SOX17:0.979172314663;E2F1..5:0.935479488463;OCT4_SOX2{dimer}:0.933405446989;TFDP1:0.929897272394;GZF1:0.914925229515;SP1:0.913837733786;SOX2:0.905427846558;RREB1:0.874983705454;NKX2-3_NKX2-5:0.87101720749;NANOG:0.855713613949;GTF2I:0.77443624893;NKX6-1,2:0.695225523827;PATZ1:0.683483393454;ZNF384:0.67312045593;TFAP4:0.658222307348;MTE{core}:0.639576287614;TFAP2B:0.628147627896;VSX1,2:0.62369043695;PAX5:0.62317298458;TFAP2{A,C}:0.619190104088;MAZ:0.618133687007;TEAD1:0.613499316366;NRF1:0.593986662554;NR6A1:0.58351363398;T:0.582319961771;ZNF143:0.574626430412;GFI1B:0.543833172041;KLF4:0.539127578378;ZBTB6:0.52683488124;ZNF148:0.526086356297;CDC5L:0.489504271384;TFCP2:0.486303804573;HIC1:0.476682939158;PRRX1,2:0.467228944947;ESRRA:0.466183778223;STAT1,3:0.461482795445;GCM1,2:0.459388410634;PAX1,9:0.458534668036;FOXM1:0.452646917554;ZFP161:0.433028608421;NR5A1,2:0.431919361911;BREu{core}:0.423783792465;TBP:0.406870502084;MTF1:0.378154876681;SRF:0.364464790881;HOX{A5,B5}:0.35940932901;TBX4,5:0.355397893915;FOXL1:0.335442386423;EP300:0.333236480549;MED-1{core}:0.333100068457;RBPJ:0.32871887084;MYBL2:0.327921089656;HNF4A_NR2F1,2:0.311276906038;PAX8:0.3030237929;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.302098081748;ONECUT1,2:0.296986472262;SPZ1:0.282529942379;NR3C1:0.275857507025;JUN:0.271044265431;SOX5:0.259817700375;IKZF1:0.253224335824;RFX1:0.244550124075;POU2F1..3:0.242343503714;HSF1,2:0.228583115126;ELK1,4_GABP{A,B1}:0.226040832789;REST:0.214457426112;NHLH1,2:0.208392333201;RXR{A,B,G}:0.199227730214;MYB:0.181840675837;TP53:0.170428138784;POU3F1..4:0.157365647689;HMX1:0.154997393254;CRX:0.153750411565;ESR1:0.14101857522;EN1,2:0.138677685385;DBP:0.132917622343;STAT2,4,6:0.120685587586;YY1:0.120397800596;NKX2-1,4:0.118653936003;SMAD1..7,9:0.116686552696;NR1H4:0.108097405807;RXRA_VDR{dimer}:0.100554603076;HAND1,2:0.0942646701882;TAL1_TCF{3,4,12}:0.0872991219771;PDX1:0.0689368658805;NFIX:0.0499329480896;CUX2:0.0411037578804;NKX2-2,8:0.0358460750653;MEF2{A,B,C,D}:0.0316421023776;TOPORS:0.0126200932304;HES1:-0.000486848224801;ADNP_IRX_SIX_ZHX:-0.000971845797594;ZNF238:-0.00401711952304;FOS_FOS{B,L1}_JUN{B,D}:-0.00570572457406;NFE2L2:-0.00969706571268;BACH2:-0.0102708600061;bHLH_family:-0.0379747026446;HNF1A:-0.0403241660338;ZNF423:-0.0406409924763;NKX3-2:-0.0481382144459;NFE2L1:-0.0760517916712;AR:-0.102929821305;FOXQ1:-0.111188024838;RUNX1..3:-0.117071096091;FOSL2:-0.118888472459;NANOG{mouse}:-0.121918238306;FOXD3:-0.136843746967;ATF6:-0.14623611158;AHR_ARNT_ARNT2:-0.14998258783;PRDM1:-0.154213766081;EGR1..3:-0.168598451079;PAX3,7:-0.173360502432;LMO2:-0.183954304527;NFE2:-0.230018270716;PAX6:-0.230780324148;UFEwm:-0.239983583707;GLI1..3:-0.246853737584;MYFfamily:-0.253583406834;POU1F1:-0.254001443869;NFIL3:-0.266609234101;XBP1:-0.268059308311;TGIF1:-0.272730173112;GATA6:-0.308923386289;STAT5{A,B}:-0.326536961214;NFKB1_REL_RELA:-0.347561821139;DMAP1_NCOR{1,2}_SMARC:-0.366483832706;FOXP1:-0.370799186235;NFATC1..3:-0.389222734688;HOX{A4,D4}:-0.390699103401;HOXA9_MEIS1:-0.394438759811;FOXP3:-0.406135368475;SNAI1..3:-0.432877183448;RORA:-0.439568609518;HMGA1,2:-0.453721707617;NKX3-1:-0.463490676796;CEBPA,B_DDIT3:-0.473236604138;HBP1_HMGB_SSRP1_UBTF:-0.482277042315;ETS1,2:-0.489559706541;HLF:-0.491250038917;SPIB:-0.494494167483;FOXA2:-0.512288938091;HOX{A6,A7,B6,B7}:-0.520803448584;CREB1:-0.533524676588;PAX2:-0.546471165484;RFX2..5_RFXANK_RFXAP:-0.571495267871;GATA4:-0.585708916583;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.594036300457;FOX{D1,D2}:-0.595036338758;ALX4:-0.636020052881;ATF4:-0.641106822397;PPARG:-0.662724911476;ELF1,2,4:-0.681636116421;ATF5_CREB3:-0.747469190196;IRF1,2:-0.748631143663;SPI1:-0.750420234276;PITX1..3:-0.77931064148;IRF7:-0.782412710373;POU6F1:-0.785912249823;AIRE:-0.794099494257;MAFB:-0.804468495265;PAX4:-0.823282130551;ATF2:-0.825697150689;HIF1A:-0.829157519898;MYOD1:-0.845789583067;FOXO1,3,4:-0.872983887115;IKZF2:-0.876336214879;TEF:-0.900188584328;ARID5B:-0.914804563402;ALX1:-0.928363509288;ZEB1:-0.955006867852;FOX{I1,J2}:-1.04180974447;EVI1:-1.12713877195;SREBF1,2:-1.14097815886;CDX1,2,4:-1.15445357796;BPTF:-1.15616335567;FOX{F1,F2,J1}:-1.1898653704;FOXN1:-1.36826494499;TLX2:-1.71401838499;ZBTB16:-1.88850203759
|top_motifs=GFI1:2.198589542;PBX1:1.75809496165;SOX{8,9,10}:1.41285396199;GTF2A1,2:1.38333002687;NFY{A,B,C}:1.38078413304;EBF1:1.36589979293;LEF1_TCF7_TCF7L1,2:1.34591039856;XCPE1{core}:1.31675025716;ZIC1..3:1.18592481417;MZF1:1.1273360465;POU5F1:1.08756242091;LHX3,4:0.990933374529;TLX1..3_NFIC{dimer}:0.984632928285;SOX17:0.979172314663;E2F1..5:0.935479488463;OCT4_SOX2{dimer}:0.933405446989;TFDP1:0.929897272394;GZF1:0.914925229515;SP1:0.913837733786;SOX2:0.905427846558;RREB1:0.874983705454;NKX2-3_NKX2-5:0.87101720749;NANOG:0.855713613949;GTF2I:0.77443624893;NKX6-1,2:0.695225523827;PATZ1:0.683483393454;ZNF384:0.67312045593;TFAP4:0.658222307348;MTE{core}:0.639576287614;TFAP2B:0.628147627896;VSX1,2:0.62369043695;PAX5:0.62317298458;TFAP2{A,C}:0.619190104088;MAZ:0.618133687007;TEAD1:0.613499316366;NRF1:0.593986662554;NR6A1:0.58351363398;T:0.582319961771;ZNF143:0.574626430412;GFI1B:0.543833172041;KLF4:0.539127578378;ZBTB6:0.52683488124;ZNF148:0.526086356297;CDC5L:0.489504271384;TFCP2:0.486303804573;HIC1:0.476682939158;PRRX1,2:0.467228944947;ESRRA:0.466183778223;STAT1,3:0.461482795445;GCM1,2:0.459388410634;PAX1,9:0.458534668036;FOXM1:0.452646917554;ZFP161:0.433028608421;NR5A1,2:0.431919361911;BREu{core}:0.423783792465;TBP:0.406870502084;MTF1:0.378154876681;SRF:0.364464790881;HOX{A5,B5}:0.35940932901;TBX4,5:0.355397893915;FOXL1:0.335442386423;EP300:0.333236480549;MED-1{core}:0.333100068457;RBPJ:0.32871887084;MYBL2:0.327921089656;HNF4A_NR2F1,2:0.311276906038;PAX8:0.3030237929;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.302098081748;ONECUT1,2:0.296986472262;SPZ1:0.282529942379;NR3C1:0.275857507025;JUN:0.271044265431;SOX5:0.259817700375;IKZF1:0.253224335824;RFX1:0.244550124075;POU2F1..3:0.242343503714;HSF1,2:0.228583115126;ELK1,4_GABP{A,B1}:0.226040832789;REST:0.214457426112;NHLH1,2:0.208392333201;RXR{A,B,G}:0.199227730214;MYB:0.181840675837;TP53:0.170428138784;POU3F1..4:0.157365647689;HMX1:0.154997393254;CRX:0.153750411565;ESR1:0.14101857522;EN1,2:0.138677685385;DBP:0.132917622343;STAT2,4,6:0.120685587586;YY1:0.120397800596;NKX2-1,4:0.118653936003;SMAD1..7,9:0.116686552696;NR1H4:0.108097405807;RXRA_VDR{dimer}:0.100554603076;HAND1,2:0.0942646701882;TAL1_TCF{3,4,12}:0.0872991219771;PDX1:0.0689368658805;NFIX:0.0499329480896;CUX2:0.0411037578804;NKX2-2,8:0.0358460750653;MEF2{A,B,C,D}:0.0316421023776;TOPORS:0.0126200932304;HES1:-0.000486848224801;ADNP_IRX_SIX_ZHX:-0.000971845797594;ZNF238:-0.00401711952304;FOS_FOS{B,L1}_JUN{B,D}:-0.00570572457406;NFE2L2:-0.00969706571268;BACH2:-0.0102708600061;bHLH_family:-0.0379747026446;HNF1A:-0.0403241660338;ZNF423:-0.0406409924763;NKX3-2:-0.0481382144459;NFE2L1:-0.0760517916712;AR:-0.102929821305;FOXQ1:-0.111188024838;RUNX1..3:-0.117071096091;FOSL2:-0.118888472459;NANOG{mouse}:-0.121918238306;FOXD3:-0.136843746967;ATF6:-0.14623611158;AHR_ARNT_ARNT2:-0.14998258783;PRDM1:-0.154213766081;EGR1..3:-0.168598451079;PAX3,7:-0.173360502432;LMO2:-0.183954304527;NFE2:-0.230018270716;PAX6:-0.230780324148;UFEwm:-0.239983583707;GLI1..3:-0.246853737584;MYFfamily:-0.253583406834;POU1F1:-0.254001443869;NFIL3:-0.266609234101;XBP1:-0.268059308311;TGIF1:-0.272730173112;GATA6:-0.308923386289;STAT5{A,B}:-0.326536961214;NFKB1_REL_RELA:-0.347561821139;DMAP1_NCOR{1,2}_SMARC:-0.366483832706;FOXP1:-0.370799186235;NFATC1..3:-0.389222734688;HOX{A4,D4}:-0.390699103401;HOXA9_MEIS1:-0.394438759811;FOXP3:-0.406135368475;SNAI1..3:-0.432877183448;RORA:-0.439568609518;HMGA1,2:-0.453721707617;NKX3-1:-0.463490676796;CEBPA,B_DDIT3:-0.473236604138;HBP1_HMGB_SSRP1_UBTF:-0.482277042315;ETS1,2:-0.489559706541;HLF:-0.491250038917;SPIB:-0.494494167483;FOXA2:-0.512288938091;HOX{A6,A7,B6,B7}:-0.520803448584;CREB1:-0.533524676588;PAX2:-0.546471165484;RFX2..5_RFXANK_RFXAP:-0.571495267871;GATA4:-0.585708916583;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.594036300457;FOX{D1,D2}:-0.595036338758;ALX4:-0.636020052881;ATF4:-0.641106822397;PPARG:-0.662724911476;ELF1,2,4:-0.681636116421;ATF5_CREB3:-0.747469190196;IRF1,2:-0.748631143663;SPI1:-0.750420234276;PITX1..3:-0.77931064148;IRF7:-0.782412710373;POU6F1:-0.785912249823;AIRE:-0.794099494257;MAFB:-0.804468495265;PAX4:-0.823282130551;ATF2:-0.825697150689;HIF1A:-0.829157519898;MYOD1:-0.845789583067;FOXO1,3,4:-0.872983887115;IKZF2:-0.876336214879;TEF:-0.900188584328;ARID5B:-0.914804563402;ALX1:-0.928363509288;ZEB1:-0.955006867852;FOX{I1,J2}:-1.04180974447;EVI1:-1.12713877195;SREBF1,2:-1.14097815886;CDX1,2,4:-1.15445357796;BPTF:-1.15616335567;FOX{F1,F2,J1}:-1.1898653704;FOXN1:-1.36826494499;TLX2:-1.71401838499;ZBTB16:-1.88850203759
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11500-119F6;search_select_hide=table117:FF:11500-119F6
}}
}}

Latest revision as of 18:04, 4 June 2020

Name:Astrocyte - cerebellum, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11321
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecerebellum
dev stageNA
sexNA
ageNA
cell typeastrocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC1815
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005763
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11321 CAGE DRX008112 DRR008984
Accession ID Hg19

Library idBAMCTSS
CNhs11321 DRZ000409 DRZ001794
Accession ID Hg38

Library idBAMCTSS
CNhs11321 DRZ011759 DRZ013144
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005763
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.TTAGGC sRNA-Seq DRX037056 DRR041422
Accession ID Hg19

Library idBAMCTSS
SRhi10005.TTAGGC DRZ007064


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.118
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0504
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0338
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.279
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.246
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.137
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.174
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0913
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0218
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.157
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.672
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0504
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.634
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0504
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.651
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0956
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.24
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0956
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11321

Jaspar motifP-value
MA0002.20.0655
MA0003.10.838
MA0004.10.302
MA0006.10.581
MA0007.10.945
MA0009.10.0394
MA0014.10.823
MA0017.10.186
MA0018.20.861
MA0019.10.156
MA0024.12.50585e-5
MA0025.10.935
MA0027.10.319
MA0028.10.971
MA0029.10.698
MA0030.10.381
MA0031.10.143
MA0035.20.899
MA0038.11.0379e-8
MA0039.20.423
MA0040.10.749
MA0041.10.333
MA0042.10.874
MA0043.10.165
MA0046.10.194
MA0047.20.0251
MA0048.10.178
MA0050.11.9097e-4
MA0051.10.0289
MA0052.10.389
MA0055.10.0436
MA0057.10.711
MA0058.10.311
MA0059.10.101
MA0060.18.92091e-20
MA0061.10.00539
MA0062.20.0678
MA0065.20.0102
MA0066.10.307
MA0067.10.0426
MA0068.10.0224
MA0069.10.626
MA0070.18.11554e-5
MA0071.10.51
MA0072.10.989
MA0073.10.875
MA0074.10.469
MA0076.10.871
MA0077.10.164
MA0078.10.97
MA0079.20.739
MA0080.24.23502e-10
MA0081.10.0693
MA0083.10.063
MA0084.10.978
MA0087.10.594
MA0088.10.251
MA0090.10.0841
MA0091.10.229
MA0092.10.458
MA0093.10.404
MA0099.20.209
MA0100.10.727
MA0101.10.126
MA0102.20.00149
MA0103.10.00503
MA0104.20.157
MA0105.11.31892e-4
MA0106.10.418
MA0107.10.0676
MA0108.25.72972e-7
MA0111.10.235
MA0112.20.0223
MA0113.10.941
MA0114.10.227
MA0115.10.875
MA0116.17.45301e-4
MA0117.10.392
MA0119.10.241
MA0122.10.767
MA0124.10.481
MA0125.10.0532
MA0131.10.939
MA0135.10.0138
MA0136.11.69349e-8
MA0137.20.675
MA0138.20.57
MA0139.10.382
MA0140.10.557
MA0141.10.395
MA0142.10.391
MA0143.10.256
MA0144.10.402
MA0145.10.664
MA0146.10.856
MA0147.10.14
MA0148.10.0297
MA0149.10.0284
MA0150.10.00189
MA0152.10.357
MA0153.10.116
MA0154.10.0355
MA0155.10.298
MA0156.16.10689e-4
MA0157.10.263
MA0159.10.0466
MA0160.10.339
MA0162.10.436
MA0163.11.40441e-4
MA0164.10.887
MA0258.10.0344
MA0259.10.451



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11321

Novel motifP-value
10.00993
100.00792
1000.955
1010.441
1020.296
1030.175
1040.744
1050.131
1060.0291
1070.875
1080.181
1090.19
110.194
1100.765
1110.018
1120.0387
1130.546
1140.0096
1150.762
1160.812
1170.0255
1180.113
1190.0317
120.905
1200.967
1210.426
1220.916
1230.00119
1240.927
1250.288
1260.554
1270.222
1280.221
1290.456
130.544
1300.0233
1310.658
1320.91
1330.383
1340.227
1350.605
1360.894
1370.0595
1380.0511
1394.57678e-4
140.85
1400.0786
1410.384
1420.598
1430.285
1440.84
1450.548
1460.42
1470.98
1480.00804
1490.429
150.101
1500.83
1510.272
1520.276
1530.121
1540.306
1550.0159
1560.768
1570.77
1580.0696
1590.928
160.262
1600.853
1610.543
1620.775
1630.689
1640.0313
1650.129
1660.964
1670.238
1680.499
1690.545
170.207
180.243
190.925
20.974
200.646
210.285
220.835
230.221
240.635
250.477
260.429
270.728
280.446
290.131
30.0458
300.118
310.803
320.564
330.864
340.641
350.109
360.114
370.0293
380.384
390.73
40.818
400.685
410.295
420.225
430.123
440.183
450.967
460.197
470.234
480.355
490.092
50.177
500.676
510.562
520.621
530.299
540.407
550.587
560.752
570.418
580.0877
590.801
60.497
600.119
610.0752
620.0406
630.3
640.748
650.4
660.154
670.401
680.399
690.864
70.504
700.021
710.0602
720.284
730.057
740.497
750.0022
760.0173
770.711
780.0444
790.402
80.355
800.657
810.342
820.0448
830.847
840.564
850.0376
860.0893
870.912
880.516
890.799
90.832
900.00205
910.541
920.0493
930.306
940.255
950.0276
960.149
970.886
980.765
990.115



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11321


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000128 (oligodendrocyte)
0000126 (macroglial cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
0000127 (astrocyte)
0002603 (astrocyte of the cerebellum)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002037 (cerebellum)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000195 (human astrocyte of the cerebellum sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)

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