FF:11506-119G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004725 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004725 | ||
|accession_numbers=CAGE;DRX008268;DRR009140;DRZ000565;DRZ001950;DRZ011915;DRZ013300 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037058;DRR041424;DRZ007066 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002554 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000065 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Lymphatic%252c%2520donor1.CNhs11322.11506-119G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11506-119G3 | |id=FF:11506-119G3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000065 | ||
|is_obsolete= | |||
|library_id=CNhs11322 | |||
|library_id_phase_based=2:CNhs11322 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11506 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.ACAGTG.11506 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11506 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.ACAGTG.11506 | |||
|name=Fibroblast - Lymphatic, donor1 | |name=Fibroblast - Lymphatic, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11322,LSID767,release009,COMPLETED | |profile_hcage=CNhs11322,LSID767,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.172936674416375,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.183112159796019,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0928046575612026,0,0,0,0,0,0,0,0,0.20093438219211,0,0,0,0.450298806609889,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112601635087824,0,0,0,-0.0584468268118252,-0.0706623746638305,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,0.104763633936969,0,0,-0.0163792890275153,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0.033891180778512,0,-0.193016162687932,-0.143515142523472,0,0,0.230781565112239,0,0,0,0,0,0,0,0,0,0.538458521986437,0,-0.0504125515893149,0,0,0,0,0,0.144826575711481,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.129705641302286,0,-0.120879483793741,0.198349887740659,0.0594584679612697,0.203007518998488,-0.055712496781182,0,0,0,0.105444035359076,0.198387013462807,0,0,0.0187551762801643,-0.181349618560659,0,0,0.275533807387367,0,-0.0910744820173204,0.29999633488777,0,-0.35372509215798,0,0,0,0,0,0,0,0,0,0,0,0.0830415612106015,-0.326988596678969,-0.0304099808375785,0,0,0,0.0516229565610553,0,-0.0114964185134371,0.371069956450853,0.228426618148347,0.0073281403979107,0.0801955723455862,0,-0.302389727009913,0.104688070711357,-0.587940899173743,0.287836062858709,0.133668206692938,0.0910883365142291,0,0.278264809132495,0.131825411184908,-0.115966604895651,-0.0478233299382509,0.14105869058331,0.0308779900707952,-0.00552882614025996,0,0,0.281070056064076,-0.76514378723743,0,0,0.514276038515613,0.0258927811960915,0.25765645115191,-0.023628652267891,-0.117461195724539,-0.188222444783443,0.619383896430964,0.505947682816468,0,0.116601074396362,0,0,-0.087969206950705,0.0094656361607628,0.322385550617772,-0.165527366568791,0,-0.0336786552010921,-0.0683442610773682,0,-0.170100806843376,0.0957316101703025,0,0.0145381632191305,-0.297707174807336,0,0,0,0,0.281070056064076,0.19000064887375,-0.25842208696609,0.0482144945085316,0,0.106130381372714,-0.0261919649259497,-0.156751052320549,0,0.232402125201999,0.135060158606682,0,-0.292633804596236,0,0.319860488115812,-0.415591812884037,0.204260381787605,-0.141324749327661,-0.0584468268118252,-0.730471933775731,-0.0418022628113236,0.289944426760025,0.0213577368101799,0,1.64256953635164,0,-0.0732471489179737,0.0648579807858954,0,0.334568136069347,0,-0.174558182807491,0,-0.724558708428096,0,-0.213387741727868,-0.259363695409164,-0.439289374580686,-0.233238874467969,0,0.263707979633038,0.28821586082615,0,0,0,0,0.130702972729437,0.112601635087824,0.0694196281994872,0.00154557135284335,0,-0.123501769450654,0,0,-0.140393784454154,-0.235476037764389,0,0.57789802556434,0.556706457382012,0.47213075740483,0.334327733174954,0,0.29321743229815,-0.364630281928648,0,0,-0.60592806381803,0.198818817593081,-0.0480181323224336,0.318438850149444,0.0647006754733485,0.0319122185777825,0,0,-0.177527765965176,0,0.132086705357546,0,0,0.0311887594652527,0.333670693619756,0,0,0,-0.195265690557764,0,-0.0478054289319703,0,0,0,0,0,-1.13453003597266,0.0954654763934406,0,0.220761079024932,0,0,0,0.281070056064076,0,0,0,0.5717651916362,0.0112134048735162,0.0735182113355025,-0.12301741567642,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.049259569955411,0,0,0,-0.27695440160179,0,0,0,0,-0.110621478958373,0,0,-0.344996775378628,0,0.245291083523465,-0.0815818795468414,0,0.0175274160353945,0.345261039827281,0.0130857106732205,0,0,0.188951674820001,0,0,-1.03594432163325,0.0258097153770246,0,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.122006274695959,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.586458721814015,0,0,0,0,0,0,0,0,-0.190355883599166,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.172936674416375,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.699022307401544,0,0,0,0,0,0,0,0.00623675785798594,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767255831277355,0,0.092449291279573,0,0,0,-0.0920933246010035,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.183112159796019,0,0,-0.0920328098005262,0,0,0,0,0,0,0.138440783193429,0.642857065116024,0.0101821802946118,0,0,0,0.170763830822489,0.450298806609889,0,0,0,0.214292668645175,0,0,0,0,0,0,0,0,0.281070056064076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0448699396594939,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232847980825022,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.450298806609889,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.318028478722954,0,0,0,0,0,0,0,0,0,0,0,0,0.388978627459762,0,0,0,0,0,0,0,0,0,0,0.40186876438422,0,0,0,0,0,0,0,0,0.5717651916362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104763633936969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0214348816378973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC2535 | |rna_catalog_number=SC2535 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119G3 | |rna_tube_id=119G3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.ACAGTG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.45733982232707e-222!GO:0005737;cytoplasm;5.59458542271013e-174!GO:0043226;organelle;4.60061755658175e-147!GO:0043229;intracellular organelle;8.64730272701572e-147!GO:0043231;intracellular membrane-bound organelle;4.1076864767566e-146!GO:0043227;membrane-bound organelle;7.5390524174395e-146!GO:0044444;cytoplasmic part;9.60039665314392e-128!GO:0044422;organelle part;8.94449477293269e-120!GO:0044446;intracellular organelle part;1.24879516643942e-118!GO:0032991;macromolecular complex;2.11657835061079e-71!GO:0005515;protein binding;2.86015153737957e-70!GO:0030529;ribonucleoprotein complex;4.67135138200482e-67!GO:0005739;mitochondrion;6.54678119616963e-66!GO:0044237;cellular metabolic process;6.22488579061675e-65!GO:0044238;primary metabolic process;2.96496746638295e-64!GO:0043233;organelle lumen;1.40988132822117e-57!GO:0031974;membrane-enclosed lumen;1.40988132822117e-57!GO:0043170;macromolecule metabolic process;1.07129593030294e-53!GO:0031090;organelle membrane;1.38907472939297e-49!GO:0044428;nuclear part;3.59974228655061e-49!GO:0003723;RNA binding;2.13229085427106e-47!GO:0044429;mitochondrial part;1.03629696129968e-44!GO:0005840;ribosome;2.27465172032376e-44!GO:0005634;nucleus;9.96902745819981e-44!GO:0009058;biosynthetic process;2.46279820913449e-42!GO:0006412;translation;9.93484733994121e-41!GO:0019538;protein metabolic process;8.04347464847987e-40!GO:0003735;structural constituent of ribosome;2.36799630396364e-39!GO:0016043;cellular component organization and biogenesis;1.20853675910288e-38!GO:0044249;cellular biosynthetic process;2.31362906993038e-38!GO:0031967;organelle envelope;1.28832293673533e-35!GO:0031975;envelope;2.72031090100006e-35!GO:0009059;macromolecule biosynthetic process;8.08582455065973e-35!GO:0044260;cellular macromolecule metabolic process;1.08558404174158e-34!GO:0043234;protein complex;2.61492637437695e-34!GO:0044267;cellular protein metabolic process;2.00649971961636e-33!GO:0033279;ribosomal subunit;2.23046904049574e-33!GO:0005829;cytosol;2.85841140945262e-32!GO:0006396;RNA processing;1.23430147231249e-31!GO:0031981;nuclear lumen;6.20161406803436e-31!GO:0015031;protein transport;1.05503802484616e-30!GO:0005740;mitochondrial envelope;5.58782433984534e-30!GO:0033036;macromolecule localization;8.77208100717703e-30!GO:0045184;establishment of protein localization;3.67660678012133e-28!GO:0031966;mitochondrial membrane;3.97897174433433e-28!GO:0008104;protein localization;1.51921537224112e-27!GO:0006996;organelle organization and biogenesis;1.08702545682997e-26!GO:0019866;organelle inner membrane;3.00633004834077e-25!GO:0065003;macromolecular complex assembly;4.43306244461204e-25!GO:0016071;mRNA metabolic process;5.99750556605735e-25!GO:0046907;intracellular transport;1.10302288366326e-24!GO:0043228;non-membrane-bound organelle;1.45702614139164e-24!GO:0043232;intracellular non-membrane-bound organelle;1.45702614139164e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.72862701090545e-24!GO:0005743;mitochondrial inner membrane;2.68680743466516e-24!GO:0043283;biopolymer metabolic process;3.93655157487238e-24!GO:0022607;cellular component assembly;1.01374926204798e-22!GO:0005783;endoplasmic reticulum;3.56481316698985e-22!GO:0010467;gene expression;3.5762082582799e-22!GO:0008380;RNA splicing;5.58422171484282e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.49059866220109e-21!GO:0006886;intracellular protein transport;5.93144413535194e-21!GO:0006397;mRNA processing;1.60474449605281e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.25888299210595e-20!GO:0006259;DNA metabolic process;4.71431047089077e-20!GO:0044445;cytosolic part;6.67522629296255e-20!GO:0012505;endomembrane system;7.47397380569324e-20!GO:0044432;endoplasmic reticulum part;2.07833329682061e-19!GO:0005654;nucleoplasm;8.85818183502532e-19!GO:0006119;oxidative phosphorylation;1.97118580986093e-18!GO:0015934;large ribosomal subunit;2.68497642449485e-18!GO:0031980;mitochondrial lumen;6.45303780509372e-18!GO:0005759;mitochondrial matrix;6.45303780509372e-18!GO:0051186;cofactor metabolic process;1.69165996194554e-17!GO:0007049;cell cycle;6.75160967161092e-17!GO:0008134;transcription factor binding;2.14394328976692e-16!GO:0044455;mitochondrial membrane part;2.42319316623437e-16!GO:0048770;pigment granule;2.66259002738143e-16!GO:0042470;melanosome;2.66259002738143e-16!GO:0044451;nucleoplasm part;3.21150985748602e-16!GO:0005681;spliceosome;4.5128377264135e-16!GO:0015935;small ribosomal subunit;8.82817416507638e-16!GO:0006457;protein folding;2.45363406344279e-15!GO:0051649;establishment of cellular localization;3.33006178759192e-15!GO:0051641;cellular localization;4.23928151637906e-15!GO:0016874;ligase activity;2.55155790410537e-14!GO:0000166;nucleotide binding;2.59065244876178e-14!GO:0005794;Golgi apparatus;5.06436415397398e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.99597654540817e-14!GO:0005746;mitochondrial respiratory chain;1.01893203300611e-13!GO:0005789;endoplasmic reticulum membrane;1.28884979085769e-13!GO:0022402;cell cycle process;1.63730717304775e-13!GO:0044248;cellular catabolic process;1.73989405051545e-13!GO:0016462;pyrophosphatase activity;2.04914087310663e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;2.36537624071269e-13!GO:0017111;nucleoside-triphosphatase activity;2.42434105678884e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.427201430782e-13!GO:0006732;coenzyme metabolic process;5.1738799377732e-13!GO:0005730;nucleolus;6.84741989539204e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.09449870022588e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.53321153596885e-12!GO:0044265;cellular macromolecule catabolic process;2.65815319602467e-12!GO:0050136;NADH dehydrogenase (quinone) activity;3.37507581530131e-12!GO:0003954;NADH dehydrogenase activity;3.37507581530131e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.37507581530131e-12!GO:0005761;mitochondrial ribosome;7.09781651083509e-12!GO:0000313;organellar ribosome;7.09781651083509e-12!GO:0000502;proteasome complex (sensu Eukaryota);7.81659757188915e-12!GO:0000278;mitotic cell cycle;8.96402726923027e-12!GO:0003712;transcription cofactor activity;9.21903607102791e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.77467183135779e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.04376777267451e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.75109104108886e-11!GO:0042773;ATP synthesis coupled electron transport;2.75109104108886e-11!GO:0051082;unfolded protein binding;3.05247402194425e-11!GO:0012501;programmed cell death;5.30071741975762e-11!GO:0022618;protein-RNA complex assembly;5.44118053683764e-11!GO:0005793;ER-Golgi intermediate compartment;5.72348028869068e-11!GO:0043285;biopolymer catabolic process;7.80457144290959e-11!GO:0006915;apoptosis;8.64296423673282e-11!GO:0048193;Golgi vesicle transport;9.74667539694202e-11!GO:0009057;macromolecule catabolic process;9.89705269131895e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.98566029005923e-11!GO:0045271;respiratory chain complex I;9.98566029005923e-11!GO:0005747;mitochondrial respiratory chain complex I;9.98566029005923e-11!GO:0006605;protein targeting;1.52995030219812e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.34632010783201e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.61720301007693e-10!GO:0008135;translation factor activity, nucleic acid binding;3.49724218788576e-10!GO:0044257;cellular protein catabolic process;4.35569083138011e-10!GO:0019941;modification-dependent protein catabolic process;4.35569083138011e-10!GO:0043632;modification-dependent macromolecule catabolic process;4.35569083138011e-10!GO:0051276;chromosome organization and biogenesis;4.40790683116836e-10!GO:0008219;cell death;4.94292360052395e-10!GO:0016265;death;4.94292360052395e-10!GO:0006511;ubiquitin-dependent protein catabolic process;6.12580264131792e-10!GO:0016192;vesicle-mediated transport;6.51833625203641e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;6.51833625203641e-10!GO:0006512;ubiquitin cycle;7.38037982813149e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;9.1838795431846e-10!GO:0000375;RNA splicing, via transesterification reactions;9.1838795431846e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.1838795431846e-10!GO:0006366;transcription from RNA polymerase II promoter;9.59010084089969e-10!GO:0048523;negative regulation of cellular process;9.7859921579152e-10!GO:0017076;purine nucleotide binding;1.00490655305793e-09!GO:0032553;ribonucleotide binding;1.07397943842031e-09!GO:0032555;purine ribonucleotide binding;1.07397943842031e-09!GO:0043412;biopolymer modification;1.19401786853774e-09!GO:0006323;DNA packaging;2.81075258721645e-09!GO:0016491;oxidoreductase activity;3.3368906629927e-09!GO:0042254;ribosome biogenesis and assembly;3.43788891960657e-09!GO:0009055;electron carrier activity;3.48151714162485e-09!GO:0009259;ribonucleotide metabolic process;4.08060988366291e-09!GO:0051188;cofactor biosynthetic process;4.31875175578004e-09!GO:0000074;regulation of progression through cell cycle;4.31875175578004e-09!GO:0051726;regulation of cell cycle;4.46303610734081e-09!GO:0006163;purine nucleotide metabolic process;5.00227261962226e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.33462433035347e-09!GO:0009150;purine ribonucleotide metabolic process;8.60593189867552e-09!GO:0030163;protein catabolic process;1.05264992939675e-08!GO:0022403;cell cycle phase;1.3372777117709e-08!GO:0006464;protein modification process;1.89711681938451e-08!GO:0044427;chromosomal part;2.10493342925584e-08!GO:0005524;ATP binding;2.7137994491693e-08!GO:0006461;protein complex assembly;3.00692262923187e-08!GO:0048519;negative regulation of biological process;3.01540359192297e-08!GO:0006164;purine nucleotide biosynthetic process;3.55681108384198e-08!GO:0032559;adenyl ribonucleotide binding;3.79207558751844e-08!GO:0030554;adenyl nucleotide binding;4.6739708630449e-08!GO:0007067;mitosis;4.6906391811962e-08!GO:0005788;endoplasmic reticulum lumen;5.24670958509871e-08!GO:0000087;M phase of mitotic cell cycle;5.60732305645802e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.94899622456455e-08!GO:0009260;ribonucleotide biosynthetic process;5.96821553817578e-08!GO:0005694;chromosome;6.62515381194936e-08!GO:0009117;nucleotide metabolic process;7.31231197807527e-08!GO:0009056;catabolic process;7.61722631829868e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.89608647911205e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.91619523309428e-08!GO:0003743;translation initiation factor activity;1.18874957918613e-07!GO:0009141;nucleoside triphosphate metabolic process;1.24711292146705e-07!GO:0009060;aerobic respiration;1.37400381395443e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.51107928842261e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.51107928842261e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.65643633435603e-07!GO:0003714;transcription corepressor activity;1.70623328070289e-07!GO:0065004;protein-DNA complex assembly;1.82088768835388e-07!GO:0003676;nucleic acid binding;1.86738066238977e-07!GO:0006333;chromatin assembly or disassembly;2.05363642145277e-07!GO:0016740;transferase activity;2.26222197717105e-07!GO:0006974;response to DNA damage stimulus;2.5519788861523e-07!GO:0016604;nuclear body;2.61574758144159e-07!GO:0006399;tRNA metabolic process;2.86452343382522e-07!GO:0006260;DNA replication;3.45780622716506e-07!GO:0005635;nuclear envelope;3.46334213055865e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.46334213055865e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.46334213055865e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.46334213055865e-07!GO:0042981;regulation of apoptosis;4.04634837550461e-07!GO:0043067;regulation of programmed cell death;4.41348279239371e-07!GO:0016563;transcription activator activity;4.41437254543658e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.83491242826906e-07!GO:0030120;vesicle coat;4.86272725605495e-07!GO:0030662;coated vesicle membrane;4.86272725605495e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.45322982607243e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.45322982607243e-07!GO:0006413;translational initiation;6.84415265431525e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.93308187015089e-07!GO:0016070;RNA metabolic process;8.03046390729471e-07!GO:0006913;nucleocytoplasmic transport;8.20613324261852e-07!GO:0015986;ATP synthesis coupled proton transport;8.47038430001379e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.47038430001379e-07!GO:0016564;transcription repressor activity;8.85264730172617e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.23558073443652e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.23558073443652e-07!GO:0006446;regulation of translational initiation;9.65441544185328e-07!GO:0043038;amino acid activation;9.65441544185328e-07!GO:0006418;tRNA aminoacylation for protein translation;9.65441544185328e-07!GO:0043039;tRNA aminoacylation;9.65441544185328e-07!GO:0045333;cellular respiration;1.00679202210949e-06!GO:0005768;endosome;1.02163405975705e-06!GO:0043687;post-translational protein modification;1.1012782167669e-06!GO:0044431;Golgi apparatus part;1.171716507598e-06!GO:0046034;ATP metabolic process;1.27979338192457e-06!GO:0051169;nuclear transport;1.4099183957305e-06!GO:0008639;small protein conjugating enzyme activity;1.43679030606747e-06!GO:0006091;generation of precursor metabolites and energy;1.44771851538003e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.45057618033262e-06!GO:0048475;coated membrane;1.65563532292374e-06!GO:0030117;membrane coat;1.65563532292374e-06!GO:0000785;chromatin;1.68030641097163e-06!GO:0006334;nucleosome assembly;1.68641487113198e-06!GO:0006099;tricarboxylic acid cycle;1.70429801477437e-06!GO:0046356;acetyl-CoA catabolic process;1.70429801477437e-06!GO:0008654;phospholipid biosynthetic process;1.83734821753431e-06!GO:0051187;cofactor catabolic process;1.83734821753431e-06!GO:0006364;rRNA processing;1.88429765592755e-06!GO:0009108;coenzyme biosynthetic process;1.88973000117802e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.91303683485471e-06!GO:0042623;ATPase activity, coupled;1.94830616469444e-06!GO:0051301;cell division;2.23429257674539e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.27503012548319e-06!GO:0031497;chromatin assembly;2.5044028819692e-06!GO:0004842;ubiquitin-protein ligase activity;2.65781806781576e-06!GO:0000279;M phase;2.83028723295967e-06!GO:0007005;mitochondrion organization and biogenesis;3.11313222585154e-06!GO:0009109;coenzyme catabolic process;3.13040154311288e-06!GO:0048522;positive regulation of cellular process;3.14256923711018e-06!GO:0043069;negative regulation of programmed cell death;3.14331830572141e-06!GO:0009719;response to endogenous stimulus;3.22749009457756e-06!GO:0019829;cation-transporting ATPase activity;3.36384500508491e-06!GO:0006084;acetyl-CoA metabolic process;3.54531635233192e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.68439643701442e-06!GO:0043066;negative regulation of apoptosis;4.0221667074676e-06!GO:0016887;ATPase activity;4.0221667074676e-06!GO:0051246;regulation of protein metabolic process;4.0221667074676e-06!GO:0016072;rRNA metabolic process;4.38262465280721e-06!GO:0016607;nuclear speck;4.96114327528063e-06!GO:0019787;small conjugating protein ligase activity;5.35766831744769e-06!GO:0008565;protein transporter activity;6.31749826393603e-06!GO:0031965;nuclear membrane;6.40559520540892e-06!GO:0016568;chromatin modification;6.47181747758615e-06!GO:0044440;endosomal part;6.74245438323081e-06!GO:0010008;endosome membrane;6.74245438323081e-06!GO:0044453;nuclear membrane part;6.80587483972558e-06!GO:0006754;ATP biosynthetic process;7.10039340267764e-06!GO:0006753;nucleoside phosphate metabolic process;7.10039340267764e-06!GO:0003924;GTPase activity;7.43723157009855e-06!GO:0045259;proton-transporting ATP synthase complex;7.93522735988927e-06!GO:0006281;DNA repair;8.53252447847375e-06!GO:0005667;transcription factor complex;1.03892183028582e-05!GO:0005773;vacuole;1.12406338450455e-05!GO:0003713;transcription coactivator activity;1.21685241479803e-05!GO:0016779;nucleotidyltransferase activity;1.22572889889043e-05!GO:0031324;negative regulation of cellular metabolic process;1.22867679797403e-05!GO:0016881;acid-amino acid ligase activity;1.27430323882534e-05!GO:0065002;intracellular protein transport across a membrane;1.50246119722922e-05!GO:0045454;cell redox homeostasis;1.58093209302428e-05!GO:0006916;anti-apoptosis;1.63083345113311e-05!GO:0044262;cellular carbohydrate metabolic process;1.77231780839809e-05!GO:0005770;late endosome;2.29317185626245e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.42834865462462e-05!GO:0045786;negative regulation of progression through cell cycle;2.46353107051154e-05!GO:0017038;protein import;2.46795426508179e-05!GO:0005762;mitochondrial large ribosomal subunit;2.66113347400965e-05!GO:0000315;organellar large ribosomal subunit;2.66113347400965e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.68447300700073e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.7985198115009e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.80224504386703e-05!GO:0000139;Golgi membrane;2.86629730133133e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.90419724980856e-05!GO:0003697;single-stranded DNA binding;2.98298910422934e-05!GO:0016049;cell growth;3.28942995433631e-05!GO:0008361;regulation of cell size;3.57182262779674e-05!GO:0031252;leading edge;3.76878167193952e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.11231692071766e-05!GO:0031988;membrane-bound vesicle;4.20381057503782e-05!GO:0050794;regulation of cellular process;4.46228177584017e-05!GO:0006752;group transfer coenzyme metabolic process;4.58832805425335e-05!GO:0015630;microtubule cytoskeleton;5.22906021977198e-05!GO:0005905;coated pit;5.6221717654805e-05!GO:0051329;interphase of mitotic cell cycle;6.31726374172389e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.46622091876599e-05!GO:0001558;regulation of cell growth;6.48787259196337e-05!GO:0000323;lytic vacuole;6.96476014365261e-05!GO:0005764;lysosome;6.96476014365261e-05!GO:0008610;lipid biosynthetic process;7.08397123084371e-05!GO:0016853;isomerase activity;7.13234577795222e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.18733846076693e-05!GO:0019899;enzyme binding;8.54365329443042e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.56771102765697e-05!GO:0046474;glycerophospholipid biosynthetic process;9.98284311804821e-05!GO:0051325;interphase;9.98284311804821e-05!GO:0051789;response to protein stimulus;9.99987891576705e-05!GO:0006986;response to unfolded protein;9.99987891576705e-05!GO:0006793;phosphorus metabolic process;0.000100806502783247!GO:0006796;phosphate metabolic process;0.000100806502783247!GO:0030176;integral to endoplasmic reticulum membrane;0.000109054117240582!GO:0033116;ER-Golgi intermediate compartment membrane;0.000118199530716228!GO:0006082;organic acid metabolic process;0.000121210059449407!GO:0005791;rough endoplasmic reticulum;0.000124723076927061!GO:0019752;carboxylic acid metabolic process;0.000131972866794182!GO:0009165;nucleotide biosynthetic process;0.000131972866794182!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000137459324562267!GO:0030867;rough endoplasmic reticulum membrane;0.000139380995450714!GO:0032446;protein modification by small protein conjugation;0.0001410675472841!GO:0009892;negative regulation of metabolic process;0.000157345847501671!GO:0048518;positive regulation of biological process;0.000172910929458359!GO:0005798;Golgi-associated vesicle;0.00018940602031398!GO:0016567;protein ubiquitination;0.000192551128526473!GO:0004298;threonine endopeptidase activity;0.000208979204247644!GO:0030029;actin filament-based process;0.000215959210990588!GO:0005813;centrosome;0.000221143186291612!GO:0008026;ATP-dependent helicase activity;0.00022145708065014!GO:0019867;outer membrane;0.000223120627106742!GO:0016126;sterol biosynthetic process;0.00022472429368106!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000242069178810296!GO:0031968;organelle outer membrane;0.000244008030869798!GO:0000245;spliceosome assembly;0.000246437406363193!GO:0005643;nuclear pore;0.000277602058198158!GO:0016787;hydrolase activity;0.000284704063237528!GO:0051427;hormone receptor binding;0.000284704063237528!GO:0016481;negative regulation of transcription;0.000309367225685213!GO:0005048;signal sequence binding;0.000309448867761758!GO:0016310;phosphorylation;0.000334870808849958!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000366715880895884!GO:0045941;positive regulation of transcription;0.000379310923315678!GO:0046467;membrane lipid biosynthetic process;0.000400634029022998!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000432244908371429!GO:0008250;oligosaccharyl transferase complex;0.000472344845508967!GO:0031982;vesicle;0.000474997118352198!GO:0031410;cytoplasmic vesicle;0.000475840865378304!GO:0007010;cytoskeleton organization and biogenesis;0.000510376173881224!GO:0046483;heterocycle metabolic process;0.000515042093607538!GO:0035257;nuclear hormone receptor binding;0.000549777119913755!GO:0000151;ubiquitin ligase complex;0.000552397544662115!GO:0046930;pore complex;0.000552397544662115!GO:0043623;cellular protein complex assembly;0.00056669955124024!GO:0006613;cotranslational protein targeting to membrane;0.000578154837874966!GO:0003899;DNA-directed RNA polymerase activity;0.000593405418433433!GO:0006979;response to oxidative stress;0.000600647785800633!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000655475327336671!GO:0004386;helicase activity;0.000665617522210854!GO:0005819;spindle;0.000687133168911528!GO:0046489;phosphoinositide biosynthetic process;0.000723809611434831!GO:0005741;mitochondrial outer membrane;0.000735807348797156!GO:0005815;microtubule organizing center;0.000760882409680635!GO:0030132;clathrin coat of coated pit;0.000863844579932203!GO:0045792;negative regulation of cell size;0.00103126873535292!GO:0045893;positive regulation of transcription, DNA-dependent;0.00110551759394426!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00111639313573396!GO:0018196;peptidyl-asparagine modification;0.00112405831439741!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00112405831439741!GO:0065009;regulation of a molecular function;0.00116925967162636!GO:0030308;negative regulation of cell growth;0.00119683936543507!GO:0043566;structure-specific DNA binding;0.00123036796056671!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0012515337968233!GO:0005769;early endosome;0.00126112903025152!GO:0007243;protein kinase cascade;0.00128163088373592!GO:0006778;porphyrin metabolic process;0.00130703202838966!GO:0033013;tetrapyrrole metabolic process;0.00130703202838966!GO:0030133;transport vesicle;0.00134042923330139!GO:0005525;GTP binding;0.00138554866460869!GO:0006520;amino acid metabolic process;0.00142005546630258!GO:0006790;sulfur metabolic process;0.00144230407268145!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00146577149163268!GO:0051170;nuclear import;0.00149388612125745!GO:0051920;peroxiredoxin activity;0.00155526428348135!GO:0016859;cis-trans isomerase activity;0.00157888920232494!GO:0009967;positive regulation of signal transduction;0.00159025085996218!GO:0050789;regulation of biological process;0.00166528042735624!GO:0006606;protein import into nucleus;0.00177539611659189!GO:0006695;cholesterol biosynthetic process;0.00180576214802984!GO:0000786;nucleosome;0.00181113544189241!GO:0042802;identical protein binding;0.00197895671949987!GO:0006403;RNA localization;0.00197895671949987!GO:0050657;nucleic acid transport;0.0021166230227563!GO:0051236;establishment of RNA localization;0.0021166230227563!GO:0050658;RNA transport;0.0021166230227563!GO:0043488;regulation of mRNA stability;0.0021944372244149!GO:0043487;regulation of RNA stability;0.0021944372244149!GO:0004576;oligosaccharyl transferase activity;0.00220746609889369!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0023046726013366!GO:0006779;porphyrin biosynthetic process;0.00257647359676992!GO:0033014;tetrapyrrole biosynthetic process;0.00257647359676992!GO:0019843;rRNA binding;0.00268733324786342!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00292487614902191!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00300438157858528!GO:0030118;clathrin coat;0.00300869563975699!GO:0000314;organellar small ribosomal subunit;0.0030107843625559!GO:0005763;mitochondrial small ribosomal subunit;0.0030107843625559!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00301961714182687!GO:0016044;membrane organization and biogenesis;0.00302212799892083!GO:0005885;Arp2/3 protein complex;0.00339940225067543!GO:0031902;late endosome membrane;0.00343233739920144!GO:0006950;response to stress;0.00343233739920144!GO:0006612;protein targeting to membrane;0.00344901278475635!GO:0006650;glycerophospholipid metabolic process;0.00374071893379601!GO:0017166;vinculin binding;0.00381797020456953!GO:0040008;regulation of growth;0.00389689036337403!GO:0006626;protein targeting to mitochondrion;0.003928416966155!GO:0006740;NADPH regeneration;0.00395107281725005!GO:0006098;pentose-phosphate shunt;0.00395107281725005!GO:0015992;proton transport;0.00400760156239783!GO:0030658;transport vesicle membrane;0.00403844940994517!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00406430915856315!GO:0051252;regulation of RNA metabolic process;0.00409824839546721!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00415280256510442!GO:0015399;primary active transmembrane transporter activity;0.00415280256510442!GO:0006818;hydrogen transport;0.00421993137094652!GO:0042168;heme metabolic process;0.00451568247550168!GO:0043681;protein import into mitochondrion;0.00455869936913811!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00455869936913811!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0048083553511252!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0048083553511252!GO:0006402;mRNA catabolic process;0.00509096922535024!GO:0045926;negative regulation of growth;0.00509849153131319!GO:0043284;biopolymer biosynthetic process;0.00511758294355258!GO:0051348;negative regulation of transferase activity;0.00511758294355258!GO:0051087;chaperone binding;0.00530740175986525!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0053961307693841!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0053961307693841!GO:0005684;U2-dependent spliceosome;0.00541694779600469!GO:0006839;mitochondrial transport;0.00553238379087225!GO:0043021;ribonucleoprotein binding;0.00563547170062547!GO:0030041;actin filament polymerization;0.00563805329956643!GO:0033673;negative regulation of kinase activity;0.00583473596888653!GO:0006469;negative regulation of protein kinase activity;0.00583473596888653!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00584099982262202!GO:0007050;cell cycle arrest;0.00591743374467842!GO:0006414;translational elongation;0.0059458015552569!GO:0048468;cell development;0.00619015327411648!GO:0006506;GPI anchor biosynthetic process;0.00619015327411648!GO:0006497;protein amino acid lipidation;0.00621825554370282!GO:0030134;ER to Golgi transport vesicle;0.00639651455105953!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00647667880932566!GO:0007006;mitochondrial membrane organization and biogenesis;0.00654051129908164!GO:0030880;RNA polymerase complex;0.00656286080074097!GO:0030659;cytoplasmic vesicle membrane;0.0065912121715672!GO:0032561;guanyl ribonucleotide binding;0.00666300337770553!GO:0019001;guanyl nucleotide binding;0.00666300337770553!GO:0035258;steroid hormone receptor binding;0.00700371274872644!GO:0006066;alcohol metabolic process;0.00717352891719359!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00717352891719359!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00717352891719359!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00717352891719359!GO:0008092;cytoskeletal protein binding;0.00743508444197275!GO:0006807;nitrogen compound metabolic process;0.00760594630059105!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00760594630059105!GO:0000082;G1/S transition of mitotic cell cycle;0.00773726933841294!GO:0005774;vacuolar membrane;0.0077988667800724!GO:0030663;COPI coated vesicle membrane;0.00789375104769755!GO:0030126;COPI vesicle coat;0.00789375104769755!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00828008234193205!GO:0016125;sterol metabolic process;0.00833004332631338!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00836033412734998!GO:0031072;heat shock protein binding;0.00859055265406151!GO:0001726;ruffle;0.00860031770835102!GO:0006783;heme biosynthetic process;0.00871275590171841!GO:0045892;negative regulation of transcription, DNA-dependent;0.00941592052954487!GO:0006769;nicotinamide metabolic process;0.00948471409559902!GO:0030127;COPII vesicle coat;0.00949056773877788!GO:0012507;ER to Golgi transport vesicle membrane;0.00949056773877788!GO:0000096;sulfur amino acid metabolic process;0.00976665789240779!GO:0030660;Golgi-associated vesicle membrane;0.0097825614953394!GO:0030137;COPI-coated vesicle;0.0098551102855093!GO:0006595;polyamine metabolic process;0.00994096483218769!GO:0008243;plasminogen activator activity;0.0100450154549173!GO:0016860;intramolecular oxidoreductase activity;0.0103123042932958!GO:0022890;inorganic cation transmembrane transporter activity;0.0103692303340255!GO:0048037;cofactor binding;0.0103738510037837!GO:0007051;spindle organization and biogenesis;0.0105730033255729!GO:0009308;amine metabolic process;0.0106664166813591!GO:0003724;RNA helicase activity;0.0107180264729587!GO:0051168;nuclear export;0.0107660724480301!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0107904624095455!GO:0044452;nucleolar part;0.0108812816008532!GO:0006739;NADP metabolic process;0.011086269873827!GO:0009112;nucleobase metabolic process;0.0111397318544379!GO:0035035;histone acetyltransferase binding;0.0111923664563109!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0112646082091645!GO:0000075;cell cycle checkpoint;0.0112807851178109!GO:0042158;lipoprotein biosynthetic process;0.0114199451729697!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0120353834600431!GO:0015002;heme-copper terminal oxidase activity;0.0120353834600431!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0120353834600431!GO:0004129;cytochrome-c oxidase activity;0.0120353834600431!GO:0006509;membrane protein ectodomain proteolysis;0.0120959398546411!GO:0033619;membrane protein proteolysis;0.0120959398546411!GO:0033559;unsaturated fatty acid metabolic process;0.0121729964570098!GO:0006636;unsaturated fatty acid biosynthetic process;0.0121729964570098!GO:0030119;AP-type membrane coat adaptor complex;0.0123215923833499!GO:0005657;replication fork;0.0127172356040465!GO:0006118;electron transport;0.0131393779300686!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0132458329095811!GO:0050662;coenzyme binding;0.0133625689360982!GO:0000209;protein polyubiquitination;0.0134499689144559!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0135537527542137!GO:0000428;DNA-directed RNA polymerase complex;0.0135537527542137!GO:0016363;nuclear matrix;0.0136420519759383!GO:0005862;muscle thin filament tropomyosin;0.0136784555482976!GO:0030384;phosphoinositide metabolic process;0.0136784555482976!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0137492161032751!GO:0008154;actin polymerization and/or depolymerization;0.0139538125779285!GO:0003702;RNA polymerase II transcription factor activity;0.0143228849318415!GO:0030125;clathrin vesicle coat;0.0149595486509787!GO:0030665;clathrin coated vesicle membrane;0.0149595486509787!GO:0043086;negative regulation of catalytic activity;0.0151996877242386!GO:0051028;mRNA transport;0.0151998767161034!GO:0006733;oxidoreduction coenzyme metabolic process;0.0155820130868685!GO:0043492;ATPase activity, coupled to movement of substances;0.0159206213152927!GO:0044437;vacuolar part;0.0159777781820607!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0164685542609932!GO:0008632;apoptotic program;0.0168471126574366!GO:0022408;negative regulation of cell-cell adhesion;0.0170058702784184!GO:0006505;GPI anchor metabolic process;0.0170058702784184!GO:0008652;amino acid biosynthetic process;0.0170058702784184!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0170793317006176!GO:0051287;NAD binding;0.0171556078698778!GO:0048487;beta-tubulin binding;0.0171942678122285!GO:0007264;small GTPase mediated signal transduction;0.0174029993532701!GO:0030433;ER-associated protein catabolic process;0.0174029993532701!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0174029993532701!GO:0030131;clathrin adaptor complex;0.0179535386184309!GO:0015036;disulfide oxidoreductase activity;0.017969066137143!GO:0031272;regulation of pseudopodium formation;0.0179946434564732!GO:0031269;pseudopodium formation;0.0179946434564732!GO:0031344;regulation of cell projection organization and biogenesis;0.0179946434564732!GO:0031268;pseudopodium organization and biogenesis;0.0179946434564732!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0179946434564732!GO:0031274;positive regulation of pseudopodium formation;0.0179946434564732!GO:0006401;RNA catabolic process;0.0186091042962194!GO:0006891;intra-Golgi vesicle-mediated transport;0.0186221224403419!GO:0032508;DNA duplex unwinding;0.0189888301635169!GO:0032392;DNA geometric change;0.0189888301635169!GO:0006767;water-soluble vitamin metabolic process;0.019173422286597!GO:0005581;collagen;0.0193563075762994!GO:0003756;protein disulfide isomerase activity;0.0193652589209097!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0193652589209097!GO:0044433;cytoplasmic vesicle part;0.0201654397341638!GO:0003682;chromatin binding;0.0204311210358148!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0205405971589659!GO:0006383;transcription from RNA polymerase III promoter;0.0206376135878106!GO:0019318;hexose metabolic process;0.020839396236142!GO:0008186;RNA-dependent ATPase activity;0.0209656441220422!GO:0005975;carbohydrate metabolic process;0.0222589249142601!GO:0030027;lamellipodium;0.0222589249142601!GO:0016741;transferase activity, transferring one-carbon groups;0.0225904199476566!GO:0008047;enzyme activator activity;0.0228208883118026!GO:0005996;monosaccharide metabolic process;0.0228208883118026!GO:0001953;negative regulation of cell-matrix adhesion;0.0228208883118026!GO:0006643;membrane lipid metabolic process;0.0231488470001746!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0232594265053163!GO:0008168;methyltransferase activity;0.0235181399025305!GO:0040029;regulation of gene expression, epigenetic;0.0235357712227323!GO:0005765;lysosomal membrane;0.0235357712227323!GO:0008283;cell proliferation;0.0238236423970943!GO:0006220;pyrimidine nucleotide metabolic process;0.0239631303770039!GO:0050790;regulation of catalytic activity;0.0242910800497583!GO:0000049;tRNA binding;0.0242910800497583!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0242910800497583!GO:0008139;nuclear localization sequence binding;0.0243614916691464!GO:0006354;RNA elongation;0.0244534498153723!GO:0008033;tRNA processing;0.0247753205218505!GO:0031529;ruffle organization and biogenesis;0.0247818441788136!GO:0006519;amino acid and derivative metabolic process;0.0248487740898052!GO:0046519;sphingoid metabolic process;0.0256334923265338!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0257327269931674!GO:0048471;perinuclear region of cytoplasm;0.0262361049139908!GO:0003684;damaged DNA binding;0.0264022198395687!GO:0045936;negative regulation of phosphate metabolic process;0.0269455986706482!GO:0019206;nucleoside kinase activity;0.0269894131662584!GO:0048500;signal recognition particle;0.027058516545248!GO:0008538;proteasome activator activity;0.0273098523170227!GO:0044255;cellular lipid metabolic process;0.0276000973781659!GO:0030508;thiol-disulfide exchange intermediate activity;0.0285379591250132!GO:0006268;DNA unwinding during replication;0.0288068767283478!GO:0051128;regulation of cellular component organization and biogenesis;0.0288334024342111!GO:0006007;glucose catabolic process;0.0290590161490715!GO:0007040;lysosome organization and biogenesis;0.0292827021980235!GO:0005096;GTPase activator activity;0.0294353528801321!GO:0006672;ceramide metabolic process;0.0295097048856813!GO:0001872;zymosan binding;0.029562642966374!GO:0001878;response to yeast;0.029562642966374!GO:0007033;vacuole organization and biogenesis;0.0295663498248101!GO:0016272;prefoldin complex;0.0299820553371452!GO:0005100;Rho GTPase activator activity;0.0300758952517298!GO:0006458;'de novo' protein folding;0.0302155745094113!GO:0051084;'de novo' posttranslational protein folding;0.0302155745094113!GO:0007346;regulation of progression through mitotic cell cycle;0.0304425175768102!GO:0007162;negative regulation of cell adhesion;0.0312447551873638!GO:0043065;positive regulation of apoptosis;0.0312447551873638!GO:0016197;endosome transport;0.0315275871309117!GO:0005869;dynactin complex;0.0322079042891338!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0323608896430418!GO:0022415;viral reproductive process;0.0324177656864721!GO:0031625;ubiquitin protein ligase binding;0.032443276145443!GO:0009303;rRNA transcription;0.0325241836987332!GO:0030145;manganese ion binding;0.0328781915326222!GO:0030521;androgen receptor signaling pathway;0.0328781915326222!GO:0009893;positive regulation of metabolic process;0.0330851861954774!GO:0008312;7S RNA binding;0.0341065647462158!GO:0031301;integral to organelle membrane;0.0341566549710189!GO:0043068;positive regulation of programmed cell death;0.0345317868705393!GO:0019798;procollagen-proline dioxygenase activity;0.0346426222544787!GO:0000030;mannosyltransferase activity;0.0346426222544787!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0349373790451327!GO:0004674;protein serine/threonine kinase activity;0.0353661194730781!GO:0047485;protein N-terminus binding;0.035629428290129!GO:0019362;pyridine nucleotide metabolic process;0.0362828053247587!GO:0009116;nucleoside metabolic process;0.0364931529260289!GO:0003711;transcription elongation regulator activity;0.0364931529260289!GO:0042157;lipoprotein metabolic process;0.0368149862146451!GO:0048660;regulation of smooth muscle cell proliferation;0.0380603464005909!GO:0006289;nucleotide-excision repair;0.0382354727960064!GO:0031543;peptidyl-proline dioxygenase activity;0.038589921492492!GO:0007021;tubulin folding;0.0388063711184133!GO:0035303;regulation of dephosphorylation;0.0390854479884539!GO:0030833;regulation of actin filament polymerization;0.0399588433083182!GO:0004004;ATP-dependent RNA helicase activity;0.0403225828679259!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0404396478348508!GO:0051052;regulation of DNA metabolic process;0.0404445750086203!GO:0043433;negative regulation of transcription factor activity;0.0406613363595956!GO:0006352;transcription initiation;0.0410728424975507!GO:0065007;biological regulation;0.041464633059456!GO:0051775;response to redox state;0.0442077187232001!GO:0006980;redox signal response;0.0442077187232001!GO:0004177;aminopeptidase activity;0.0443304990635307!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0443304990635307!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0443304990635307!GO:0003746;translation elongation factor activity;0.0443607411010894!GO:0009081;branched chain family amino acid metabolic process;0.0458096334740361!GO:0005586;collagen type III;0.0460496873928643!GO:0006984;ER-nuclear signaling pathway;0.046607532181011!GO:0007088;regulation of mitosis;0.0467752289353652!GO:0006644;phospholipid metabolic process;0.0472918923195999!GO:0012506;vesicle membrane;0.0476178319286751!GO:0035267;NuA4 histone acetyltransferase complex;0.0476178319286751!GO:0005874;microtubule;0.0491402269991394!GO:0001952;regulation of cell-matrix adhesion;0.0491402269991394 | |||
|sample_id=11506 | |sample_id=11506 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lymph node | |sample_tissue=lymph node | ||
|top_motifs=ZNF423:1.65033609099;GZF1:1.54410329772;TAL1_TCF{3,4,12}:1.43335406842;ZNF238:1.40191374392;NR3C1:1.3683362407;GLI1..3:1.35641387074;SRF:1.32989975606;HOX{A5,B5}:1.29866453414;PBX1:1.29633250874;RXRA_VDR{dimer}:1.28468435478;EBF1:1.27691024029;PAX8:1.26577647514;ZNF148:1.20904576009;HES1:1.19155096204;GTF2A1,2:1.16859453027;TFCP2:1.15866039375;NR6A1:1.09517430771;TFAP4:0.979998134688;TLX1..3_NFIC{dimer}:0.955818782222;IKZF1:0.921638973542;NANOG:0.910835469454;NR5A1,2:0.877000047253;ESR1:0.859859967221;T:0.804758704915;TEAD1:0.740798007041;GFI1B:0.732006852545;bHLH_family:0.72856657069;ESRRA:0.71984794274;LEF1_TCF7_TCF7L1,2:0.708922360616;HAND1,2:0.704513956259;AR:0.663479442379;TFAP2{A,C}:0.661593756199;RREB1:0.642976328785;MTF1:0.641864170747;TP53:0.627527577639;NFE2L2:0.626125240993;GTF2I:0.612853657407;EN1,2:0.602293533719;CRX:0.551303072379;ONECUT1,2:0.522691674062;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519543503187;EP300:0.505833696053;MZF1:0.474546077582;GFI1:0.468450802657;HLF:0.461832977074;NR1H4:0.439677683846;SOX17:0.432242340808;NFATC1..3:0.39763343241;TFAP2B:0.393967814796;HOX{A6,A7,B6,B7}:0.390009732132;TBX4,5:0.377291126401;MAFB:0.375301018916;RXR{A,B,G}:0.357014063876;TBP:0.333022276192;STAT5{A,B}:0.331553333138;ZBTB6:0.330351884175;NANOG{mouse}:0.319635134286;BACH2:0.30596080026;SPZ1:0.294127847783;GATA6:0.287238918936;HNF4A_NR2F1,2:0.286362701692;LHX3,4:0.283158101251;HNF1A:0.279436731621;KLF4:0.27765443834;FOS_FOS{B,L1}_JUN{B,D}:0.265345674876;NKX3-1:0.261373057015;POU6F1:0.254635301967;PDX1:0.252310699617;PAX1,9:0.213426007149;POU2F1..3:0.198026590517;CEBPA,B_DDIT3:0.189115594497;STAT2,4,6:0.185957655676;XCPE1{core}:0.183158223143;HOXA9_MEIS1:0.174484961521;ATF6:0.162228243613;SOX{8,9,10}:0.158153043121;PPARG:0.147206038731;NKX2-2,8:0.13613133977;NKX2-3_NKX2-5:0.131799686802;FOXA2:0.0968067460191;PAX5:0.0876195273606;TOPORS:0.0862812313527;RUNX1..3:0.0804221146498;REST:0.0773832361367;AHR_ARNT_ARNT2:0.0683407989107;NFE2:0.0599712580075;HIC1:0.0571697900162;PRDM1:0.0482784708986;NFE2L1:0.0356400748381;NHLH1,2:0.0102424163778;NFKB1_REL_RELA:0.00578709541347;MTE{core}:0.00170664296113;FOSL2:-0.00461122664686;RFX1:-0.00828926502018;NFIL3:-0.016265562749;MEF2{A,B,C,D}:-0.0239062664794;SP1:-0.0300705369107;SMAD1..7,9:-0.0397571735185;ZIC1..3:-0.0659098478528;ETS1,2:-0.0767688111725;PATZ1:-0.0943771360627;POU1F1:-0.0971911172323;NKX3-2:-0.122943715703;NFIX:-0.143609511743;MYB:-0.144290566051;NFY{A,B,C}:-0.146496506984;TFDP1:-0.154768206805;TGIF1:-0.164959104304;LMO2:-0.181311651431;MYFfamily:-0.193661143728;HIF1A:-0.218122485129;GCM1,2:-0.22438039245;PRRX1,2:-0.235447503465;RORA:-0.24072141281;UFEwm:-0.250589047946;CDC5L:-0.285815613732;TLX2:-0.288557092658;HSF1,2:-0.295121815961;JUN:-0.295905836736;PAX4:-0.312542567764;FOXQ1:-0.31996680152;E2F1..5:-0.321969972561;MAZ:-0.329021049124;ADNP_IRX_SIX_ZHX:-0.330815856231;POU3F1..4:-0.331876587798;YY1:-0.336068751381;MYBL2:-0.337164369787;MED-1{core}:-0.358002932179;FOXP3:-0.361343728489;PAX3,7:-0.389368478861;HMX1:-0.391368318009;FOX{D1,D2}:-0.392675030931;SPIB:-0.396827419142;SOX5:-0.427789449902;FOX{F1,F2,J1}:-0.439487128142;EGR1..3:-0.468268069347;FOXM1:-0.475785931423;OCT4_SOX2{dimer}:-0.483971140793;CUX2:-0.503984852008;DBP:-0.512979402164;ZNF143:-0.521195881042;NKX2-1,4:-0.521338252521;SNAI1..3:-0.525424041329;POU5F1:-0.552955056101;ATF2:-0.55481365736;VSX1,2:-0.579678210975;ARID5B:-0.581244340507;TEF:-0.590185267592;SPI1:-0.601670206108;IRF1,2:-0.614299426391;MYOD1:-0.639915526037;SOX2:-0.64822328524;XBP1:-0.652895119625;AIRE:-0.66326323936;ZEB1:-0.671620390551;HOX{A4,D4}:-0.680197840475;FOXO1,3,4:-0.690204317254;ALX4:-0.693008421089;ALX1:-0.702709558037;FOX{I1,J2}:-0.706054281137;ZFP161:-0.736003808925;FOXD3:-0.745639956018;NRF1:-0.74864685549;IRF7:-0.762392814363;ELF1,2,4:-0.781737164787;GATA4:-0.822722669026;PAX2:-0.827578558062;CREB1:-0.850614503542;NKX6-1,2:-0.860472636036;ATF5_CREB3:-0.870219106914;PAX6:-0.876919730868;HBP1_HMGB_SSRP1_UBTF:-0.881189603495;DMAP1_NCOR{1,2}_SMARC:-0.916898724016;ZNF384:-0.927171061697;CDX1,2,4:-0.930825803625;ELK1,4_GABP{A,B1}:-0.939437465742;BREu{core}:-0.94214506459;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.976510376102;BPTF:-0.98241328844;PITX1..3:-0.99429528217;STAT1,3:-1.10650629843;RFX2..5_RFXANK_RFXAP:-1.11587505158;ATF4:-1.14351127109;EVI1:-1.20472941579;SREBF1,2:-1.29874275592;ZBTB16:-1.42603298709;FOXL1:-1.54254119345;HMGA1,2:-1.54508733653;FOXP1:-1.61099656149;RBPJ:-1.81139368644;FOXN1:-1.82586073934;IKZF2:-2.30400306854 | |top_motifs=ZNF423:1.65033609099;GZF1:1.54410329772;TAL1_TCF{3,4,12}:1.43335406842;ZNF238:1.40191374392;NR3C1:1.3683362407;GLI1..3:1.35641387074;SRF:1.32989975606;HOX{A5,B5}:1.29866453414;PBX1:1.29633250874;RXRA_VDR{dimer}:1.28468435478;EBF1:1.27691024029;PAX8:1.26577647514;ZNF148:1.20904576009;HES1:1.19155096204;GTF2A1,2:1.16859453027;TFCP2:1.15866039375;NR6A1:1.09517430771;TFAP4:0.979998134688;TLX1..3_NFIC{dimer}:0.955818782222;IKZF1:0.921638973542;NANOG:0.910835469454;NR5A1,2:0.877000047253;ESR1:0.859859967221;T:0.804758704915;TEAD1:0.740798007041;GFI1B:0.732006852545;bHLH_family:0.72856657069;ESRRA:0.71984794274;LEF1_TCF7_TCF7L1,2:0.708922360616;HAND1,2:0.704513956259;AR:0.663479442379;TFAP2{A,C}:0.661593756199;RREB1:0.642976328785;MTF1:0.641864170747;TP53:0.627527577639;NFE2L2:0.626125240993;GTF2I:0.612853657407;EN1,2:0.602293533719;CRX:0.551303072379;ONECUT1,2:0.522691674062;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519543503187;EP300:0.505833696053;MZF1:0.474546077582;GFI1:0.468450802657;HLF:0.461832977074;NR1H4:0.439677683846;SOX17:0.432242340808;NFATC1..3:0.39763343241;TFAP2B:0.393967814796;HOX{A6,A7,B6,B7}:0.390009732132;TBX4,5:0.377291126401;MAFB:0.375301018916;RXR{A,B,G}:0.357014063876;TBP:0.333022276192;STAT5{A,B}:0.331553333138;ZBTB6:0.330351884175;NANOG{mouse}:0.319635134286;BACH2:0.30596080026;SPZ1:0.294127847783;GATA6:0.287238918936;HNF4A_NR2F1,2:0.286362701692;LHX3,4:0.283158101251;HNF1A:0.279436731621;KLF4:0.27765443834;FOS_FOS{B,L1}_JUN{B,D}:0.265345674876;NKX3-1:0.261373057015;POU6F1:0.254635301967;PDX1:0.252310699617;PAX1,9:0.213426007149;POU2F1..3:0.198026590517;CEBPA,B_DDIT3:0.189115594497;STAT2,4,6:0.185957655676;XCPE1{core}:0.183158223143;HOXA9_MEIS1:0.174484961521;ATF6:0.162228243613;SOX{8,9,10}:0.158153043121;PPARG:0.147206038731;NKX2-2,8:0.13613133977;NKX2-3_NKX2-5:0.131799686802;FOXA2:0.0968067460191;PAX5:0.0876195273606;TOPORS:0.0862812313527;RUNX1..3:0.0804221146498;REST:0.0773832361367;AHR_ARNT_ARNT2:0.0683407989107;NFE2:0.0599712580075;HIC1:0.0571697900162;PRDM1:0.0482784708986;NFE2L1:0.0356400748381;NHLH1,2:0.0102424163778;NFKB1_REL_RELA:0.00578709541347;MTE{core}:0.00170664296113;FOSL2:-0.00461122664686;RFX1:-0.00828926502018;NFIL3:-0.016265562749;MEF2{A,B,C,D}:-0.0239062664794;SP1:-0.0300705369107;SMAD1..7,9:-0.0397571735185;ZIC1..3:-0.0659098478528;ETS1,2:-0.0767688111725;PATZ1:-0.0943771360627;POU1F1:-0.0971911172323;NKX3-2:-0.122943715703;NFIX:-0.143609511743;MYB:-0.144290566051;NFY{A,B,C}:-0.146496506984;TFDP1:-0.154768206805;TGIF1:-0.164959104304;LMO2:-0.181311651431;MYFfamily:-0.193661143728;HIF1A:-0.218122485129;GCM1,2:-0.22438039245;PRRX1,2:-0.235447503465;RORA:-0.24072141281;UFEwm:-0.250589047946;CDC5L:-0.285815613732;TLX2:-0.288557092658;HSF1,2:-0.295121815961;JUN:-0.295905836736;PAX4:-0.312542567764;FOXQ1:-0.31996680152;E2F1..5:-0.321969972561;MAZ:-0.329021049124;ADNP_IRX_SIX_ZHX:-0.330815856231;POU3F1..4:-0.331876587798;YY1:-0.336068751381;MYBL2:-0.337164369787;MED-1{core}:-0.358002932179;FOXP3:-0.361343728489;PAX3,7:-0.389368478861;HMX1:-0.391368318009;FOX{D1,D2}:-0.392675030931;SPIB:-0.396827419142;SOX5:-0.427789449902;FOX{F1,F2,J1}:-0.439487128142;EGR1..3:-0.468268069347;FOXM1:-0.475785931423;OCT4_SOX2{dimer}:-0.483971140793;CUX2:-0.503984852008;DBP:-0.512979402164;ZNF143:-0.521195881042;NKX2-1,4:-0.521338252521;SNAI1..3:-0.525424041329;POU5F1:-0.552955056101;ATF2:-0.55481365736;VSX1,2:-0.579678210975;ARID5B:-0.581244340507;TEF:-0.590185267592;SPI1:-0.601670206108;IRF1,2:-0.614299426391;MYOD1:-0.639915526037;SOX2:-0.64822328524;XBP1:-0.652895119625;AIRE:-0.66326323936;ZEB1:-0.671620390551;HOX{A4,D4}:-0.680197840475;FOXO1,3,4:-0.690204317254;ALX4:-0.693008421089;ALX1:-0.702709558037;FOX{I1,J2}:-0.706054281137;ZFP161:-0.736003808925;FOXD3:-0.745639956018;NRF1:-0.74864685549;IRF7:-0.762392814363;ELF1,2,4:-0.781737164787;GATA4:-0.822722669026;PAX2:-0.827578558062;CREB1:-0.850614503542;NKX6-1,2:-0.860472636036;ATF5_CREB3:-0.870219106914;PAX6:-0.876919730868;HBP1_HMGB_SSRP1_UBTF:-0.881189603495;DMAP1_NCOR{1,2}_SMARC:-0.916898724016;ZNF384:-0.927171061697;CDX1,2,4:-0.930825803625;ELK1,4_GABP{A,B1}:-0.939437465742;BREu{core}:-0.94214506459;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.976510376102;BPTF:-0.98241328844;PITX1..3:-0.99429528217;STAT1,3:-1.10650629843;RFX2..5_RFXANK_RFXAP:-1.11587505158;ATF4:-1.14351127109;EVI1:-1.20472941579;SREBF1,2:-1.29874275592;ZBTB16:-1.42603298709;FOXL1:-1.54254119345;HMGA1,2:-1.54508733653;FOXP1:-1.61099656149;RBPJ:-1.81139368644;FOXN1:-1.82586073934;IKZF2:-2.30400306854 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11506-119G3;search_select_hide=table117:FF:11506-119G3 | |||
}} | }} | ||
Latest revision as of 18:04, 4 June 2020
| Name: | Fibroblast - Lymphatic, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11322 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11322
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11322
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.679 |
| 10 | 10 | 0.803 |
| 100 | 100 | 0.861 |
| 101 | 101 | 0.996 |
| 102 | 102 | 0.678 |
| 103 | 103 | 0.118 |
| 104 | 104 | 0.539 |
| 105 | 105 | 0.0186 |
| 106 | 106 | 0.115 |
| 107 | 107 | 0.0849 |
| 108 | 108 | 0.604 |
| 109 | 109 | 0.134 |
| 11 | 11 | 0.0426 |
| 110 | 110 | 0.142 |
| 111 | 111 | 0.408 |
| 112 | 112 | 0.44 |
| 113 | 113 | 0.632 |
| 114 | 114 | 0.159 |
| 115 | 115 | 0.434 |
| 116 | 116 | 0.31 |
| 117 | 117 | 0.966 |
| 118 | 118 | 0.828 |
| 119 | 119 | 0.237 |
| 12 | 12 | 0.416 |
| 120 | 120 | 0.674 |
| 121 | 121 | 0.479 |
| 122 | 122 | 0.268 |
| 123 | 123 | 0.07 |
| 124 | 124 | 0.457 |
| 125 | 125 | 0.422 |
| 126 | 126 | 0.99 |
| 127 | 127 | 0.623 |
| 128 | 128 | 0.249 |
| 129 | 129 | 0.267 |
| 13 | 13 | 0.654 |
| 130 | 130 | 0.0427 |
| 131 | 131 | 0.463 |
| 132 | 132 | 0.648 |
| 133 | 133 | 0.61 |
| 134 | 134 | 0.0415 |
| 135 | 135 | 0.155 |
| 136 | 136 | 0.283 |
| 137 | 137 | 0.514 |
| 138 | 138 | 0.396 |
| 139 | 139 | 0.775 |
| 14 | 14 | 0.967 |
| 140 | 140 | 0.673 |
| 141 | 141 | 0.564 |
| 142 | 142 | 0.877 |
| 143 | 143 | 0.00667 |
| 144 | 144 | 0.937 |
| 145 | 145 | 0.286 |
| 146 | 146 | 0.0738 |
| 147 | 147 | 0.196 |
| 148 | 148 | 0.393 |
| 149 | 149 | 0.0507 |
| 15 | 15 | 0.27 |
| 150 | 150 | 0.402 |
| 151 | 151 | 0.424 |
| 152 | 152 | 0.146 |
| 153 | 153 | 0.931 |
| 154 | 154 | 0.478 |
| 155 | 155 | 0.463 |
| 156 | 156 | 0.448 |
| 157 | 157 | 0.0362 |
| 158 | 158 | 0.369 |
| 159 | 159 | 0.953 |
| 16 | 16 | 0.146 |
| 160 | 160 | 0.0148 |
| 161 | 161 | 0.512 |
| 162 | 162 | 0.407 |
| 163 | 163 | 0.776 |
| 164 | 164 | 0.962 |
| 165 | 165 | 0.185 |
| 166 | 166 | 0.327 |
| 167 | 167 | 0.207 |
| 168 | 168 | 0.548 |
| 169 | 169 | 0.0245 |
| 17 | 17 | 0.117 |
| 18 | 18 | 0.0315 |
| 19 | 19 | 0.0953 |
| 2 | 2 | 0.176 |
| 20 | 20 | 0.238 |
| 21 | 21 | 0.628 |
| 22 | 22 | 0.109 |
| 23 | 23 | 0.0937 |
| 24 | 24 | 0.224 |
| 25 | 25 | 0.665 |
| 26 | 26 | 0.141 |
| 27 | 27 | 0.194 |
| 28 | 28 | 0.375 |
| 29 | 29 | 0.85 |
| 3 | 3 | 0.638 |
| 30 | 30 | 0.175 |
| 31 | 31 | 0.482 |
| 32 | 32 | 7.2753e-5 |
| 33 | 33 | 0.555 |
| 34 | 34 | 0.0775 |
| 35 | 35 | 0.991 |
| 36 | 36 | 0.976 |
| 37 | 37 | 0.372 |
| 38 | 38 | 0.243 |
| 39 | 39 | 0.208 |
| 4 | 4 | 0.266 |
| 40 | 40 | 0.0888 |
| 41 | 41 | 0.698 |
| 42 | 42 | 0.658 |
| 43 | 43 | 0.18 |
| 44 | 44 | 0.555 |
| 45 | 45 | 0.265 |
| 46 | 46 | 0.117 |
| 47 | 47 | 0.442 |
| 48 | 48 | 0.185 |
| 49 | 49 | 0.198 |
| 5 | 5 | 0.623 |
| 50 | 50 | 0.244 |
| 51 | 51 | 0.454 |
| 52 | 52 | 0.52 |
| 53 | 53 | 0.986 |
| 54 | 54 | 0.542 |
| 55 | 55 | 0.416 |
| 56 | 56 | 0.306 |
| 57 | 57 | 0.321 |
| 58 | 58 | 0.985 |
| 59 | 59 | 0.0253 |
| 6 | 6 | 0.758 |
| 60 | 60 | 0.323 |
| 61 | 61 | 0.441 |
| 62 | 62 | 0.897 |
| 63 | 63 | 0.15 |
| 64 | 64 | 0.177 |
| 65 | 65 | 0.0473 |
| 66 | 66 | 0.308 |
| 67 | 67 | 0.901 |
| 68 | 68 | 0.0108 |
| 69 | 69 | 0.269 |
| 7 | 7 | 0.741 |
| 70 | 70 | 0.445 |
| 71 | 71 | 0.179 |
| 72 | 72 | 0.753 |
| 73 | 73 | 0.178 |
| 74 | 74 | 0.461 |
| 75 | 75 | 0.714 |
| 76 | 76 | 0.241 |
| 77 | 77 | 0.032 |
| 78 | 78 | 0.92 |
| 79 | 79 | 0.395 |
| 8 | 8 | 0.0693 |
| 80 | 80 | 0.0923 |
| 81 | 81 | 0.601 |
| 82 | 82 | 0.496 |
| 83 | 83 | 0.579 |
| 84 | 84 | 0.38 |
| 85 | 85 | 0.338 |
| 86 | 86 | 0.824 |
| 87 | 87 | 0.467 |
| 88 | 88 | 0.214 |
| 89 | 89 | 0.159 |
| 9 | 9 | 0.0807 |
| 90 | 90 | 0.202 |
| 91 | 91 | 0.0516 |
| 92 | 92 | 0.208 |
| 93 | 93 | 0.398 |
| 94 | 94 | 0.159 |
| 95 | 95 | 0.98 |
| 96 | 96 | 0.376 |
| 97 | 97 | 0.248 |
| 98 | 98 | 0.235 |
| 99 | 99 | 0.0298 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11322
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000065 human fibroblast of lymphatic vessel sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002554 (fibroblast of lymphatic vessel)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000065 (human fibroblast of lymphatic vessel sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
