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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008329
|DRA_sample_Accession=CAGE@SAMD00005391
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005391
|accession_numbers=CAGE;DRX008437;DRR009309;DRZ000734;DRZ002119;DRZ012084;DRZ013469
|accession_numbers_RNASeq=sRNA-Seq;DRX037239;DRR041605;DRZ007247
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.07!117.24!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.93!84.87!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.89!76.46!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.88!75.44!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.61!44.09!IRF6;;chr6:50786591..50786614,+!p1@TFAP2B!1.55!34.66!TFAP2B;;chr17:46622205..46622218,-!p3@HOXB2!1.50!34.92!HOXB2;;chr17:46703687..46703740,-!p1@HOXB9!1.50!30.33!HOXB9;;chr6:34204921..34204939,+!p3@HMGA1!1.41!708.05!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!1.40!23.96!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.38!23.19!TFCP2L1;;chr17:46675558..46675577,-!p2@HOXB6!1.38!22.94!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.37!22.68!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.32!19.88!POU3F3;;chr21:38071430..38071456,+!p1@SIM2!1.29!18.35!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.66!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.26!17.08!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.22!15.55!ZBED2;;chr17:46622440..46622477,-!p5@HOXB2!1.18!15.80!HOXB2;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.76!IRX2;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.76!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!1.16!13.51!HOXA9;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.74!HOXD1;;chr6:34204672..34204692,+!p1@HMGA1!1.06!1171.16!HMGA1;;chr2:46524897..46524911,+!p2@EPAS1!1.02!27.02!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!1.01!9.18!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.99!146.04!MYBL2;;chr17:46622229..46622257,-!p6@HOXB2!0.98!10.20!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.35!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.96!8.16!HOXB3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.90!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.21!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.92!HOXB6;;chr17:7493405..7493419,-!p1@SOX15!0.94!7.65!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!0.94!7.65!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.11!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.41!BNC1;;chr10:8096631..8096660,+!p1@GATA3!0.91!8.67!GATA3;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.72!FOXQ1;;chr20:42295713..42295738,+!p2@MYBL2!0.89!42.05!MYBL2;;chr11:65667846..65667868,-!p1@FOSL1!0.87!180.96!FOSL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.87!6.37!POU3F3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.78!ETV4;;chr17:46703826..46703845,-!p3@HOXB9!0.85!6.12!HOXB9;;chr7:27219849..27219867,-!p6@HOXA10!0.85!6.12!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.86!HOXA11;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.86!HOXC10;;chr17:46703528..46703549,-!p5@HOXB9!0.84!5.86!HOXB9;;chr17:46675539..46675551,-!p7@HOXB6!0.82!5.61!HOXB6;;chr6:50789717..50789729,+!p4@TFAP2B!0.82!5.61!TFAP2B;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.61!HOXC9;;chr11:65686802..65686818,+!p6@DRAP1!0.81!9.94!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!0.80!5.35!EMX2;;chr1:209979411..209979433,-!p2@IRF6!0.80!5.35!IRF6;;chr7:27192185..27192209,-!p1@HOXA3!0.80!5.35!HOXA3;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.35!HOXA7;;chr20:31350184..31350200,+!p1@DNMT3B!0.79!11.47!DNMT3B;;chr10:102505493..102505546,+!p2@PAX2!0.79!5.10!PAX2;;chr17:36105074..36105086,-!p2@HNF1B!0.79!5.10!HNF1B;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.53!HMGA2;;chr12:3069037..3069119,+!p2@TEAD4!0.77!18.35!TEAD4;;chr3:69915385..69915438,+!p3@MITF!0.77!4.84!MITF;;chr7:27224842..27224872,-!p1@HOXA11!0.77!4.84!HOXA11;;chr7:28448965..28448994,+!p2@CREB5!0.76!18.35!CREB5;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.27!SOX9;;chr11:61520075..61520136,+!p1@C11orf9!0.75!10.45!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.75!4.59!HOXC5;;chr17:46675619..46675642,-!p5@HOXB6!0.75!4.59!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.75!4.59!HOXB8;;chr1:6479968..6479986,-!p1@HES2!0.75!4.59!HES2;;chr3:69811858..69811881,+!p5@MITF!0.75!4.59!MITF;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.41!EPAS1;;chr2:177016336..177016350,+!p1@HOXD4!0.73!4.33!HOXD4;;chr3:69811882..69811898,+!p6@MITF!0.73!4.33!MITF;;chr17:46675586..46675600,-!p6@HOXB6!0.73!4.33!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.72!51.23!KLF5;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.08!FOSL1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.71!4.08!LHX1;;chr17:45928443..45928473,-!p2@SP6!0.71!4.08!SP6;;chr17:46622175..46622186,-!p12@HOXB2!0.71!4.08!HOXB2;;chr17:46692457..46692484,-!p2@HOXB8!0.71!4.08!HOXB8;;chr7:27219833..27219845,-!p7@HOXA10!0.71!4.08!HOXA10;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.61!HOXB2;;chr6:31126291..31126399,+!p1@TCF19!0.69!41.80!TCF19;;chr17:46655704..46655718,-!p2@HOXB4!0.69!6.12!HOXB4;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.84!HMGA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.67!20.90!NFE2L3;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.12!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.67!6.63!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.66!3.57!GATA3;;chr16:51185318..51185348,-!p2@SALL1!0.66!3.57!SALL1;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.57!HOXB3;;chr21:38071403..38071428,+!p2@SIM2!0.66!3.57!SIM2;;chr6:21593973..21593988,+!p1@SOX4!0.64!142.48!SOX4;;chr6:21597765..21597779,+!p2@SOX4!0.63!31.35!SOX4;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.88!PHB2;;chr7:27169801..27169844,-!p2@HOXA4!0.63!3.31!HOXA4;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.31!BHLHA15;;chr8:102504651..102504683,+!p1@GRHL2!0.63!3.31!GRHL2;;chr2:176987441..176987454,+!p1@HOXD9!0.63!3.31!HOXD9;;chr2:96012397..96012417,+!p3@KCNIP3!0.63!3.31!KCNIP3;;chr3:111314230..111314241,-!p2@ZBED2!0.63!3.31!ZBED2;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.35!ZNF702P;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.35!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.10!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.84!HMGA2;;chr11:65554528..65554546,+!p1@OVOL1!0.61!3.06!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.06!SALL1;;chr17:46675469..46675481,-!p4@HOXB6!0.61!3.06!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.06!HOXB7;;chr17:46692318..46692362,-!p5@HOXB8!0.61!3.06!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.06!HOXB9;;chr2:176972000..176972025,+!p4@HOXD11!0.61!3.06!HOXD11;;chr2:96012353..96012378,+!p4@KCNIP3!0.61!3.06!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.61!3.06!ZNF732;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.06!FOXC1;;chr7:27196267..27196311,-!p1@HOXA7!0.61!3.06!HOXA7;;chr1:24646002..24646013,+!p3@GRHL3!0.61!3.06!GRHL3;;chr10:104155480..104155534,+!p2@NFKB2!0.60!23.19!NFKB2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.84!ETV4;;chr12:66218836..66218888,+!p1@HMGA2!0.59!32.62!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.59!4.59!NFATC2;;chr11:65686776..65686787,+!p9@DRAP1!0.59!3.57!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!13.00!FOSL1;;chr10:119302232..119302265,+!p1@EMX2!0.58!2.80!EMX2;;chr12:54378923..54378966,+!p1@HOXC10!0.58!2.80!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.58!2.80!HOXC9;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.58!2.80!POU3F3;;chr3:141043050..141043063,+!p22@ZBTB38!0.58!2.80!ZBTB38;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.80!IRX1;;chr6:34210478..34210481,+!p8@HMGA1!0.58!2.80!HMGA1;;chr7:27190547..27190591,-!p1@HOXA6!0.58!2.80!HOXA6;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.80!HOXA10;;chr15:67357924..67357952,+!p2@SMAD3!0.57!21.92!SMAD3;;chr1:8938736..8938756,-!p1@ENO1!0.56!3624.34!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.56!225.31!ENO1;;chr18:3450161..3450183,+!p1@TGIF1!0.56!111.38!TGIF1;;chr12:2986275..2986363,-!p1@FOXM1!0.56!32.62!FOXM1;;chr15:96869255..96869291,+!p6@NR2F2!0.56!5.35!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.56!4.59!ZFP64;;chr22:21355896..21355920,-!p4@THAP7!0.56!3.06!THAP7;;chr10:104154246..104154347,+!p3@NFKB2!0.55!19.12!NFKB2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.16!HOXB2;;chr11:64764435..64764449,-!p1@BATF2!0.55!3.82!BATF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.31!HOXC4;;chr12:54402745..54402788,+!p1@HOXC8!0.55!2.55!HOXC8;;chr16:51185573..51185593,-!p3@SALL1!0.55!2.55!SALL1;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr17:46692603..46692621,-!p6@HOXB8!0.55!2.55!HOXB8;;chr5:3595934..3595957,+!p2@IRX1!0.55!2.55!IRX1;;chr3:141043020..141043049,+!p17@ZBTB38!0.55!2.55!ZBTB38;;chr1:8938709..8938720,-!p3@ENO1!0.54!152.16!ENO1;;chr17:7492684..7492778,-!p2@SOX15!0.53!5.86!SOX15;;chr15:96869114..96869160,+!p11@NR2F2!0.53!3.57!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.52!29.06!NFKBIE;;chr22:42229210..42229229,+!p3@SREBF2!0.52!6.37!SREBF2;;chr6:1610293..1610310,+!p1@FOXC1!0.52!4.33!FOXC1;;chr17:53342311..53342400,+!p1@HLF!0.52!2.80!HLF;;chr16:52581025..52581072,-!p1@TOX3!0.52!2.29!TOX3;;chr17:46621146..46621180,-!p10@HOXB2!0.52!2.29!HOXB2;;chr6:100912785..100912822,-!p1@SIM1!0.52!2.29!SIM1;;chr6:134210243..134210257,+!p1@TCF21!0.52!2.29!TCF21;;chr9:100615499..100615519,+!p1@FOXE1!0.52!2.29!FOXE1;;chr10:119302645..119302712,+!p3@EMX2!0.52!2.29!EMX2;;chr11:65554563..65554576,+!p2@OVOL1!0.52!2.29!OVOL1;;chr1:10856694..10856715,-!p3@CASZ1!0.52!2.29!CASZ1;;chr2:176987463..176987479,+!p2@HOXD9!0.52!2.29!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.52!2.29!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.52!2.29!HOXD3;;chr2:95963052..95963106,+!p1@KCNIP3!0.52!2.29!KCNIP3;;chr9:117160738..117160782,-!p2@AKNA!0.51!11.47!AKNA;;chr3:12329358..12329393,+!p3@PPARG!0.51!6.63!PPARG;;chr3:24536253..24536328,-!p1@THRB!0.51!4.84!THRB;;chr17:41622765..41622821,-!p2@ETV4!0.51!3.82!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.51!2.80!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.50!24.98!PPP1R13L;;chr17:47492252..47492265,-!p2@PHB!0.50!11.21!PHB;;chr19:20188776..20188826,+!p1@ZNF90!0.50!7.14!ZNF90;;chr16:8962544..8962584,-!p2@CARHSP1!0.50!5.86!CARHSP1;;chr16:54320675..54320715,-!p1@IRX3!0.50!5.61!IRX3;;chr6:10412392..10412409,-!p4@TFAP2A!0.50!2.55!TFAP2A;;chr6:34204973..34204990,+!p4@HMGA1!0.49!37.47!HMGA1;;chr22:42229246..42229270,+!p2@SREBF2!0.49!34.92!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.49!9.69!HES6;;chr1:89264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|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.07!117.24!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.93!84.87!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.89!76.46!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.88!75.44!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.61!44.09!IRF6;;chr6:50786591..50786614,+!p1@TFAP2B!1.55!34.66!TFAP2B;;chr17:46622205..46622218,-!p3@HOXB2!1.50!34.92!HOXB2;;chr17:46703687..46703740,-!p1@HOXB9!1.50!30.33!HOXB9;;chr6:34204921..34204939,+!p3@HMGA1!1.41!708.05!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!1.40!23.96!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.38!23.19!TFCP2L1;;chr17:46675558..46675577,-!p2@HOXB6!1.38!22.94!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.37!22.68!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.32!19.88!POU3F3;;chr21:38071430..38071456,+!p1@SIM2!1.29!18.35!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.66!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.26!17.08!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.22!15.55!ZBED2;;chr17:46622440..46622477,-!p5@HOXB2!1.18!15.80!HOXB2;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.76!IRX2;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.76!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!1.16!13.51!HOXA9;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.74!HOXD1;;chr6:34204672..34204692,+!p1@HMGA1!1.06!1171.16!HMGA1;;chr2:46524897..46524911,+!p2@EPAS1!1.02!27.02!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!1.01!9.18!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.99!146.04!MYBL2;;chr17:46622229..46622257,-!p6@HOXB2!0.98!10.20!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.35!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.96!8.16!HOXB3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.90!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.21!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.92!HOXB6;;chr17:7493405..7493419,-!p1@SOX15!0.94!7.65!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!0.94!7.65!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.11!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.41!BNC1;;chr10:8096631..8096660,+!p1@GATA3!0.91!8.67!GATA3;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.72!FOXQ1;;chr20:42295713..42295738,+!p2@MYBL2!0.89!42.05!MYBL2;;chr11:65667846..65667868,-!p1@FOSL1!0.87!180.96!FOSL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.87!6.37!POU3F3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.78!ETV4;;chr17:46703826..46703845,-!p3@HOXB9!0.85!6.12!HOXB9;;chr7:27219849..27219867,-!p6@HOXA10!0.85!6.12!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.86!HOXA11;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.86!HOXC10;;chr17:46703528..46703549,-!p5@HOXB9!0.84!5.86!HOXB9;;chr17:46675539..46675551,-!p7@HOXB6!0.82!5.61!HOXB6;;chr6:50789717..50789729,+!p4@TFAP2B!0.82!5.61!TFAP2B;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.61!HOXC9;;chr11:65686802..65686818,+!p6@DRAP1!0.81!9.94!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!0.80!5.35!EMX2;;chr1:209979411..209979433,-!p2@IRF6!0.80!5.35!IRF6;;chr7:27192185..27192209,-!p1@HOXA3!0.80!5.35!HOXA3;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.35!HOXA7;;chr20:31350184..31350200,+!p1@DNMT3B!0.79!11.47!DNMT3B;;chr10:102505493..102505546,+!p2@PAX2!0.79!5.10!PAX2;;chr17:36105074..36105086,-!p2@HNF1B!0.79!5.10!HNF1B;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.53!HMGA2;;chr12:3069037..3069119,+!p2@TEAD4!0.77!18.35!TEAD4;;chr3:69915385..69915438,+!p3@MITF!0.77!4.84!MITF;;chr7:27224842..27224872,-!p1@HOXA11!0.77!4.84!HOXA11;;chr7:28448965..28448994,+!p2@CREB5!0.76!18.35!CREB5;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.27!SOX9;;chr11:61520075..61520136,+!p1@C11orf9!0.75!10.45!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.75!4.59!HOXC5;;chr17:46675619..46675642,-!p5@HOXB6!0.75!4.59!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.75!4.59!HOXB8;;chr1:6479968..6479986,-!p1@HES2!0.75!4.59!HES2;;chr3:69811858..69811881,+!p5@MITF!0.75!4.59!MITF;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.41!EPAS1;;chr2:177016336..177016350,+!p1@HOXD4!0.73!4.33!HOXD4;;chr3:69811882..69811898,+!p6@MITF!0.73!4.33!MITF;;chr17:46675586..46675600,-!p6@HOXB6!0.73!4.33!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.72!51.23!KLF5;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.08!FOSL1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.71!4.08!LHX1;;chr17:45928443..45928473,-!p2@SP6!0.71!4.08!SP6;;chr17:46622175..46622186,-!p12@HOXB2!0.71!4.08!HOXB2;;chr17:46692457..46692484,-!p2@HOXB8!0.71!4.08!HOXB8;;chr7:27219833..27219845,-!p7@HOXA10!0.71!4.08!HOXA10;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.61!HOXB2;;chr6:31126291..31126399,+!p1@TCF19!0.69!41.80!TCF19;;chr17:46655704..46655718,-!p2@HOXB4!0.69!6.12!HOXB4;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.84!HMGA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.67!20.90!NFE2L3;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.12!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.67!6.63!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.66!3.57!GATA3;;chr16:51185318..51185348,-!p2@SALL1!0.66!3.57!SALL1;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.57!HOXB3;;chr21:38071403..38071428,+!p2@SIM2!0.66!3.57!SIM2;;chr6:21593973..21593988,+!p1@SOX4!0.64!142.48!SOX4;;chr6:21597765..21597779,+!p2@SOX4!0.63!31.35!SOX4;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.88!PHB2;;chr7:27169801..27169844,-!p2@HOXA4!0.63!3.31!HOXA4;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.31!BHLHA15;;chr8:102504651..102504683,+!p1@GRHL2!0.63!3.31!GRHL2;;chr2:176987441..176987454,+!p1@HOXD9!0.63!3.31!HOXD9;;chr2:96012397..96012417,+!p3@KCNIP3!0.63!3.31!KCNIP3;;chr3:111314230..111314241,-!p2@ZBED2!0.63!3.31!ZBED2;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.35!ZNF702P;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.35!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.10!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.84!HMGA2;;chr11:65554528..65554546,+!p1@OVOL1!0.61!3.06!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.06!SALL1;;chr17:46675469..46675481,-!p4@HOXB6!0.61!3.06!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.06!HOXB7;;chr17:46692318..46692362,-!p5@HOXB8!0.61!3.06!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.06!HOXB9;;chr2:176972000..176972025,+!p4@HOXD11!0.61!3.06!HOXD11;;chr2:96012353..96012378,+!p4@KCNIP3!0.61!3.06!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.61!3.06!ZNF732;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.06!FOXC1;;chr7:27196267..27196311,-!p1@HOXA7!0.61!3.06!HOXA7;;chr1:24646002..24646013,+!p3@GRHL3!0.61!3.06!GRHL3;;chr10:104155480..104155534,+!p2@NFKB2!0.60!23.19!NFKB2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.84!ETV4;;chr12:66218836..66218888,+!p1@HMGA2!0.59!32.62!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.59!4.59!NFATC2;;chr11:65686776..65686787,+!p9@DRAP1!0.59!3.57!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!13.00!FOSL1;;chr10:119302232..119302265,+!p1@EMX2!0.58!2.80!EMX2;;chr12:54378923..54378966,+!p1@HOXC10!0.58!2.80!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.58!2.80!HOXC9;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.58!2.80!POU3F3;;chr3:141043050..141043063,+!p22@ZBTB38!0.58!2.80!ZBTB38;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.80!IRX1;;chr6:34210478..34210481,+!p8@HMGA1!0.58!2.80!HMGA1;;chr7:27190547..27190591,-!p1@HOXA6!0.58!2.80!HOXA6;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.80!HOXA10;;chr15:67357924..67357952,+!p2@SMAD3!0.57!21.92!SMAD3;;chr1:8938736..8938756,-!p1@ENO1!0.56!3624.34!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.56!225.31!ENO1;;chr18:3450161..3450183,+!p1@TGIF1!0.56!111.38!TGIF1;;chr12:2986275..2986363,-!p1@FOXM1!0.56!32.62!FOXM1;;chr15:96869255..96869291,+!p6@NR2F2!0.56!5.35!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.56!4.59!ZFP64;;chr22:21355896..21355920,-!p4@THAP7!0.56!3.06!THAP7;;chr10:104154246..104154347,+!p3@NFKB2!0.55!19.12!NFKB2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.16!HOXB2;;chr11:64764435..64764449,-!p1@BATF2!0.55!3.82!BATF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.31!HOXC4;;chr12:54402745..54402788,+!p1@HOXC8!0.55!2.55!HOXC8;;chr16:51185573..51185593,-!p3@SALL1!0.55!2.55!SALL1;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr17:46692603..46692621,-!p6@HOXB8!0.55!2.55!HOXB8;;chr5:3595934..3595957,+!p2@IRX1!0.55!2.55!IRX1;;chr3:141043020..141043049,+!p17@ZBTB38!0.55!2.55!ZBTB38;;chr1:8938709..8938720,-!p3@ENO1!0.54!152.16!ENO1;;chr17:7492684..7492778,-!p2@SOX15!0.53!5.86!SOX15;;chr15:96869114..96869160,+!p11@NR2F2!0.53!3.57!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.52!29.06!NFKBIE;;chr22:42229210..42229229,+!p3@SREBF2!0.52!6.37!SREBF2;;chr6:1610293..1610310,+!p1@FOXC1!0.52!4.33!FOXC1;;chr17:53342311..53342400,+!p1@HLF!0.52!2.80!HLF;;chr16:52581025..52581072,-!p1@TOX3!0.52!2.29!TOX3;;chr17:46621146..46621180,-!p10@HOXB2!0.52!2.29!HOXB2;;chr6:100912785..100912822,-!p1@SIM1!0.52!2.29!SIM1;;chr6:134210243..134210257,+!p1@TCF21!0.52!2.29!TCF21;;chr9:100615499..100615519,+!p1@FOXE1!0.52!2.29!FOXE1;;chr10:119302645..119302712,+!p3@EMX2!0.52!2.29!EMX2;;chr11:65554563..65554576,+!p2@OVOL1!0.52!2.29!OVOL1;;chr1:10856694..10856715,-!p3@CASZ1!0.52!2.29!CASZ1;;chr2:176987463..176987479,+!p2@HOXD9!0.52!2.29!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.52!2.29!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.52!2.29!HOXD3;;chr2:95963052..95963106,+!p1@KCNIP3!0.52!2.29!KCNIP3;;chr9:117160738..117160782,-!p2@AKNA!0.51!11.47!AKNA;;chr3:12329358..12329393,+!p3@PPARG!0.51!6.63!PPARG;;chr3:24536253..24536328,-!p1@THRB!0.51!4.84!THRB;;chr17:41622765..41622821,-!p2@ETV4!0.51!3.82!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.51!2.80!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.50!24.98!PPP1R13L;;chr17:47492252..47492265,-!p2@PHB!0.50!11.21!PHB;;chr19:20188776..20188826,+!p1@ZNF90!0.50!7.14!ZNF90;;chr16:8962544..8962584,-!p2@CARHSP1!0.50!5.86!CARHSP1;;chr16:54320675..54320715,-!p1@IRX3!0.50!5.61!IRX3;;chr6:10412392..10412409,-!p4@TFAP2A!0.50!2.55!TFAP2A;;chr6:34204973..34204990,+!p4@HMGA1!0.49!37.47!HMGA1;;chr22:42229246..42229270,+!p2@SREBF2!0.49!34.92!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.49!9.69!HES6;;chr1:89264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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=CL:0000222
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 39: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.ctss.bed.gz
|id=FF:11515-119H3
|id=FF:11515-119H3
|is_a=EFO:0002091;;FF:0000155
|is_a=EFO:0002091;;FF:0000155
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11330
|library_id=CNhs11330
|library_id_phase_based=2:CNhs11330
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11515
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CCGTCC.11515
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11515
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CCGTCC.11515
|name=Renal Proximal Tubular Epithelial Cell, donor1
|name=Renal Proximal Tubular Epithelial Cell, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 48: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11330,LSID768,release014,COMPLETED
|profile_hcage=CNhs11330,LSID768,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|profile_srnaseq=SRhi10014,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 87: Line 106:
|top_motifs=ZEB1:1.89887899719;SNAI1..3:1.83032620745;MYOD1:1.71795880399;XCPE1{core}:1.71278791212;HNF1A:1.59039326191;ADNP_IRX_SIX_ZHX:1.58852351326;NKX2-3_NKX2-5:1.43597415401;LMO2:1.27577304918;ZNF148:1.15644575169;PBX1:1.14123927821;RXRA_VDR{dimer}:1.09607091065;SP1:1.02152117089;LHX3,4:0.974205926821;ESRRA:0.9668192794;bHLH_family:0.960848819856;PPARG:0.885595426349;TEAD1:0.818914016704;HOX{A5,B5}:0.781617279313;NFY{A,B,C}:0.742532346504;EBF1:0.739679632409;TBX4,5:0.724715600346;TEF:0.722961479197;TFCP2:0.713464077007;GFI1:0.709810639561;POU2F1..3:0.702497728637;HAND1,2:0.698751923888;VSX1,2:0.652771342414;TFDP1:0.560787341176;ZNF423:0.552453803101;FOXQ1:0.533255007711;GLI1..3:0.494567071336;E2F1..5:0.478268649506;ONECUT1,2:0.475538194127;LEF1_TCF7_TCF7L1,2:0.462911082332;GZF1:0.427753737334;ZIC1..3:0.417413856432;POU1F1:0.413118551519;PAX5:0.405360942266;NR5A1,2:0.398327234673;CDC5L:0.391342179536;TFAP2{A,C}:0.379401994126;NR3C1:0.378384368895;FOSL2:0.372594090215;NR6A1:0.354774094298;TBP:0.352569946072;SPZ1:0.324649840338;PRRX1,2:0.323631659403;FOS_FOS{B,L1}_JUN{B,D}:0.295017661844;TP53:0.287637846018;HIC1:0.283079074201;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.252888286012;GTF2A1,2:0.22340210708;CRX:0.205864208973;POU5F1:0.200665481381;TLX1..3_NFIC{dimer}:0.199602440659;HOX{A6,A7,B6,B7}:0.184228697983;BACH2:0.174937131163;NFE2:0.139231783849;STAT5{A,B}:0.136819917721;TFAP2B:0.130329211307;MTF1:0.119946771237;NKX3-2:0.118602362376;SOX{8,9,10}:0.105921036466;NANOG:0.0920925952641;NFKB1_REL_RELA:0.0829896224237;HNF4A_NR2F1,2:0.046765915311;JUN:0.0200472728039;NFE2L2:0.0188857362761;GFI1B:0.0176652235326;MYB:0.016361631449;PAX8:0.0108155601568;ALX1:0.0040668921688;IKZF1:0.00171464399155;NR1H4:-0.00890259746001;EP300:-0.0111440725352;HOXA9_MEIS1:-0.0160143681159;NFE2L1:-0.0184019218767;ESR1:-0.0483555837481;PDX1:-0.0495322407934;HBP1_HMGB_SSRP1_UBTF:-0.0519865129144;AR:-0.0579628687615;TFAP4:-0.0632111352144;PAX1,9:-0.0677070594011;PITX1..3:-0.0681680265177;MAZ:-0.0716014452419;OCT4_SOX2{dimer}:-0.0723589693231;ZFP161:-0.080305363544;ARID5B:-0.101025207952;ATF6:-0.104298238888;MEF2{A,B,C,D}:-0.106964673437;ZNF143:-0.1090348426;STAT2,4,6:-0.115334393186;CEBPA,B_DDIT3:-0.131650297432;FOXD3:-0.156803642423;RORA:-0.162266314261;GATA6:-0.175234154072;RREB1:-0.181122742423;RXR{A,B,G}:-0.18976911532;MED-1{core}:-0.208336852875;CUX2:-0.218488886825;PAX6:-0.223391806938;HLF:-0.236202633823;ZBTB6:-0.241312781659;ETS1,2:-0.250494028314;FOXM1:-0.255870982936;ELK1,4_GABP{A,B1}:-0.259709802753;MTE{core}:-0.26097269153;AIRE:-0.262104289639;MYBL2:-0.265268843876;FOXL1:-0.267481910337;NRF1:-0.276577154463;DBP:-0.283127421008;IRF7:-0.293738941598;GTF2I:-0.29524002306;POU3F1..4:-0.302994465006;NHLH1,2:-0.306592161713;SOX2:-0.322566323325;EN1,2:-0.329846520616;RFX1:-0.340586128988;NKX2-1,4:-0.34882090286;ALX4:-0.352224321064;REST:-0.359652269486;KLF4:-0.385044610084;T:-0.388956387064;NKX2-2,8:-0.39717754999;HES1:-0.421608128978;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.424003306887;SRF:-0.428571304514;NFIL3:-0.434915868101;SPIB:-0.436331277896;NKX6-1,2:-0.440141820098;ATF2:-0.446444694217;HIF1A:-0.461258996847;GCM1,2:-0.483492063119;NKX3-1:-0.491917070486;IRF1,2:-0.495699724943;RUNX1..3:-0.501160444438;UFEwm:-0.511895632242;TAL1_TCF{3,4,12}:-0.51632878188;BREu{core}:-0.536501849903;HOX{A4,D4}:-0.541492426827;PAX3,7:-0.548244768601;FOXA2:-0.552423960422;EGR1..3:-0.559118307125;HMX1:-0.562830691235;SPI1:-0.588685267821;FOX{F1,F2,J1}:-0.613751816548;ATF5_CREB3:-0.615018058035;XBP1:-0.619009695547;ELF1,2,4:-0.641274159633;PAX2:-0.645899885448;SOX17:-0.648433290921;FOXN1:-0.668098270235;PATZ1:-0.687973389285;SREBF1,2:-0.689458712276;RFX2..5_RFXANK_RFXAP:-0.700909343538;ATF4:-0.708153077933;YY1:-0.728867327242;STAT1,3:-0.738046346343;PRDM1:-0.743612615324;CDX1,2,4:-0.748282665185;FOX{I1,J2}:-0.757506758941;HSF1,2:-0.763859766552;NFATC1..3:-0.786373719986;FOXP1:-0.790793707881;ZNF238:-0.809180200112;IKZF2:-0.814839298683;MZF1:-0.864564876198;TGIF1:-0.875347898231;SOX5:-0.89593102704;POU6F1:-0.931181883187;DMAP1_NCOR{1,2}_SMARC:-0.948876092793;MAFB:-0.958745791937;AHR_ARNT_ARNT2:-0.963415462604;FOXO1,3,4:-0.975775120754;MYFfamily:-0.98582970235;FOX{D1,D2}:-0.986759396274;SMAD1..7,9:-0.989145459071;EVI1:-1.03233833174;CREB1:-1.04615095932;NFIX:-1.08180717007;TOPORS:-1.12535596929;ZBTB16:-1.13994250225;ZNF384:-1.21122843317;FOXP3:-1.23097343658;PAX4:-1.23119575683;TLX2:-1.24277204908;HMGA1,2:-1.27105345486;RBPJ:-1.2959834224;BPTF:-1.34837576801;NANOG{mouse}:-1.40845998372;GATA4:-1.54693050619
|top_motifs=ZEB1:1.89887899719;SNAI1..3:1.83032620745;MYOD1:1.71795880399;XCPE1{core}:1.71278791212;HNF1A:1.59039326191;ADNP_IRX_SIX_ZHX:1.58852351326;NKX2-3_NKX2-5:1.43597415401;LMO2:1.27577304918;ZNF148:1.15644575169;PBX1:1.14123927821;RXRA_VDR{dimer}:1.09607091065;SP1:1.02152117089;LHX3,4:0.974205926821;ESRRA:0.9668192794;bHLH_family:0.960848819856;PPARG:0.885595426349;TEAD1:0.818914016704;HOX{A5,B5}:0.781617279313;NFY{A,B,C}:0.742532346504;EBF1:0.739679632409;TBX4,5:0.724715600346;TEF:0.722961479197;TFCP2:0.713464077007;GFI1:0.709810639561;POU2F1..3:0.702497728637;HAND1,2:0.698751923888;VSX1,2:0.652771342414;TFDP1:0.560787341176;ZNF423:0.552453803101;FOXQ1:0.533255007711;GLI1..3:0.494567071336;E2F1..5:0.478268649506;ONECUT1,2:0.475538194127;LEF1_TCF7_TCF7L1,2:0.462911082332;GZF1:0.427753737334;ZIC1..3:0.417413856432;POU1F1:0.413118551519;PAX5:0.405360942266;NR5A1,2:0.398327234673;CDC5L:0.391342179536;TFAP2{A,C}:0.379401994126;NR3C1:0.378384368895;FOSL2:0.372594090215;NR6A1:0.354774094298;TBP:0.352569946072;SPZ1:0.324649840338;PRRX1,2:0.323631659403;FOS_FOS{B,L1}_JUN{B,D}:0.295017661844;TP53:0.287637846018;HIC1:0.283079074201;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.252888286012;GTF2A1,2:0.22340210708;CRX:0.205864208973;POU5F1:0.200665481381;TLX1..3_NFIC{dimer}:0.199602440659;HOX{A6,A7,B6,B7}:0.184228697983;BACH2:0.174937131163;NFE2:0.139231783849;STAT5{A,B}:0.136819917721;TFAP2B:0.130329211307;MTF1:0.119946771237;NKX3-2:0.118602362376;SOX{8,9,10}:0.105921036466;NANOG:0.0920925952641;NFKB1_REL_RELA:0.0829896224237;HNF4A_NR2F1,2:0.046765915311;JUN:0.0200472728039;NFE2L2:0.0188857362761;GFI1B:0.0176652235326;MYB:0.016361631449;PAX8:0.0108155601568;ALX1:0.0040668921688;IKZF1:0.00171464399155;NR1H4:-0.00890259746001;EP300:-0.0111440725352;HOXA9_MEIS1:-0.0160143681159;NFE2L1:-0.0184019218767;ESR1:-0.0483555837481;PDX1:-0.0495322407934;HBP1_HMGB_SSRP1_UBTF:-0.0519865129144;AR:-0.0579628687615;TFAP4:-0.0632111352144;PAX1,9:-0.0677070594011;PITX1..3:-0.0681680265177;MAZ:-0.0716014452419;OCT4_SOX2{dimer}:-0.0723589693231;ZFP161:-0.080305363544;ARID5B:-0.101025207952;ATF6:-0.104298238888;MEF2{A,B,C,D}:-0.106964673437;ZNF143:-0.1090348426;STAT2,4,6:-0.115334393186;CEBPA,B_DDIT3:-0.131650297432;FOXD3:-0.156803642423;RORA:-0.162266314261;GATA6:-0.175234154072;RREB1:-0.181122742423;RXR{A,B,G}:-0.18976911532;MED-1{core}:-0.208336852875;CUX2:-0.218488886825;PAX6:-0.223391806938;HLF:-0.236202633823;ZBTB6:-0.241312781659;ETS1,2:-0.250494028314;FOXM1:-0.255870982936;ELK1,4_GABP{A,B1}:-0.259709802753;MTE{core}:-0.26097269153;AIRE:-0.262104289639;MYBL2:-0.265268843876;FOXL1:-0.267481910337;NRF1:-0.276577154463;DBP:-0.283127421008;IRF7:-0.293738941598;GTF2I:-0.29524002306;POU3F1..4:-0.302994465006;NHLH1,2:-0.306592161713;SOX2:-0.322566323325;EN1,2:-0.329846520616;RFX1:-0.340586128988;NKX2-1,4:-0.34882090286;ALX4:-0.352224321064;REST:-0.359652269486;KLF4:-0.385044610084;T:-0.388956387064;NKX2-2,8:-0.39717754999;HES1:-0.421608128978;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.424003306887;SRF:-0.428571304514;NFIL3:-0.434915868101;SPIB:-0.436331277896;NKX6-1,2:-0.440141820098;ATF2:-0.446444694217;HIF1A:-0.461258996847;GCM1,2:-0.483492063119;NKX3-1:-0.491917070486;IRF1,2:-0.495699724943;RUNX1..3:-0.501160444438;UFEwm:-0.511895632242;TAL1_TCF{3,4,12}:-0.51632878188;BREu{core}:-0.536501849903;HOX{A4,D4}:-0.541492426827;PAX3,7:-0.548244768601;FOXA2:-0.552423960422;EGR1..3:-0.559118307125;HMX1:-0.562830691235;SPI1:-0.588685267821;FOX{F1,F2,J1}:-0.613751816548;ATF5_CREB3:-0.615018058035;XBP1:-0.619009695547;ELF1,2,4:-0.641274159633;PAX2:-0.645899885448;SOX17:-0.648433290921;FOXN1:-0.668098270235;PATZ1:-0.687973389285;SREBF1,2:-0.689458712276;RFX2..5_RFXANK_RFXAP:-0.700909343538;ATF4:-0.708153077933;YY1:-0.728867327242;STAT1,3:-0.738046346343;PRDM1:-0.743612615324;CDX1,2,4:-0.748282665185;FOX{I1,J2}:-0.757506758941;HSF1,2:-0.763859766552;NFATC1..3:-0.786373719986;FOXP1:-0.790793707881;ZNF238:-0.809180200112;IKZF2:-0.814839298683;MZF1:-0.864564876198;TGIF1:-0.875347898231;SOX5:-0.89593102704;POU6F1:-0.931181883187;DMAP1_NCOR{1,2}_SMARC:-0.948876092793;MAFB:-0.958745791937;AHR_ARNT_ARNT2:-0.963415462604;FOXO1,3,4:-0.975775120754;MYFfamily:-0.98582970235;FOX{D1,D2}:-0.986759396274;SMAD1..7,9:-0.989145459071;EVI1:-1.03233833174;CREB1:-1.04615095932;NFIX:-1.08180717007;TOPORS:-1.12535596929;ZBTB16:-1.13994250225;ZNF384:-1.21122843317;FOXP3:-1.23097343658;PAX4:-1.23119575683;TLX2:-1.24277204908;HMGA1,2:-1.27105345486;RBPJ:-1.2959834224;BPTF:-1.34837576801;NANOG{mouse}:-1.40845998372;GATA4:-1.54693050619
|xref=
|xref=
}} {{DRAAccessionNumbers
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11515-119H3;search_select_hide=table117:FF:11515-119H3
|DRA_sample_Accession=CAGE@DRS008329
|accession_numbers=DRX008437;DRR009309;DRZ000734;DRZ002119;CAGE
|library_id=CNhs11330
}}
}}

Latest revision as of 18:05, 4 June 2020

Name:Renal Proximal Tubular Epithelial Cell, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11330
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeepithelial cell of kidney, proximal tubule
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5127
catalog numberSC4105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005391
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11330 CAGE DRX008437 DRR009309
Accession ID Hg19

Library idBAMCTSS
CNhs11330 DRZ000734 DRZ002119
Accession ID Hg38

Library idBAMCTSS
CNhs11330 DRZ012084 DRZ013469
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005391
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.CCGTCC sRNA-Seq DRX037239 DRR041605
Accession ID Hg19

Library idBAMCTSS
SRhi10014.CCGTCC DRZ007247


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.127
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0643
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0663
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.351
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0881
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.518
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.334
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0127
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0986
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11330

Jaspar motifP-value
MA0002.21
MA0003.10.391
MA0004.10.524
MA0006.10.0456
MA0007.10.0484
MA0009.10.306
MA0014.10.229
MA0017.10.0164
MA0018.20.189
MA0019.10.64
MA0024.10.0605
MA0025.10.613
MA0027.10.158
MA0028.10.446
MA0029.10.273
MA0030.10.455
MA0031.10.0411
MA0035.20.0727
MA0038.10.00242
MA0039.20.00755
MA0040.10.813
MA0041.10.283
MA0042.10.957
MA0043.10.238
MA0046.11.83958e-31
MA0047.20.309
MA0048.10.528
MA0050.10.128
MA0051.10.909
MA0052.10.329
MA0055.10.0433
MA0057.10.08
MA0058.10.52
MA0059.10.497
MA0060.14.51853e-10
MA0061.10.853
MA0062.20.0709
MA0065.20.0478
MA0066.10.652
MA0067.10.0186
MA0068.10.721
MA0069.10.154
MA0070.10.0529
MA0071.10.451
MA0072.10.675
MA0073.10.99
MA0074.10.777
MA0076.10.0519
MA0077.10.271
MA0078.10.451
MA0079.20.532
MA0080.20.0148
MA0081.10.117
MA0083.10.411
MA0084.10.00418
MA0087.10.482
MA0088.10.894
MA0090.12.42803e-4
MA0091.10.0521
MA0092.10.91
MA0093.10.503
MA0099.22.8437e-10
MA0100.10.524
MA0101.10.163
MA0102.20.0128
MA0103.12.07991e-8
MA0104.20.844
MA0105.10.35
MA0106.10.098
MA0107.10.155
MA0108.22.32413e-5
MA0111.10.439
MA0112.20.464
MA0113.10.795
MA0114.10.0368
MA0115.10.0554
MA0116.10.524
MA0117.10.0785
MA0119.10.932
MA0122.10.275
MA0124.10.36
MA0125.10.214
MA0131.10.32
MA0135.10.265
MA0136.10.111
MA0137.20.527
MA0138.20.754
MA0139.10.585
MA0140.10.759
MA0141.10.184
MA0142.10.488
MA0143.10.296
MA0144.10.432
MA0145.10.0888
MA0146.10.243
MA0147.10.98
MA0148.10.764
MA0149.10.0301
MA0150.10.898
MA0152.10.124
MA0153.14.15736e-18
MA0154.10.824
MA0155.10.373
MA0156.10.14
MA0157.10.0706
MA0159.10.128
MA0160.10.078
MA0162.10.159
MA0163.10.224
MA0164.10.649
MA0258.10.72
MA0259.10.526



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11330

Novel motifP-value
10.528
100.122
1000.285
1010.00869
1020.321
1030.732
1040.88
1050.0996
1060.169
1070.0144
1080.666
1090.0556
110.518
1100.541
1110.972
1120.508
1130.115
1140.0579
1150.584
1160.463
1170.359
1180.562
1190.493
120.825
1200.187
1210.34
1220.0179
1230.0468
1240.156
1250.244
1260.4
1270.352
1280.439
1290.0372
130.152
1300.322
1310.0751
1320.204
1330.0185
1340.55
1350.327
1360.076
1370.283
1380.209
1390.102
140.388
1400.468
1410.541
1420.805
1430.569
1440.316
1450.485
1460.0211
1470.428
1480.31
1490.833
150.846
1500.257
1510.69
1520.057
1530.52
1540.284
1550.881
1560.0216
1570.955
1580.303
1590.516
160.245
1600.171
1610.705
1620.138
1630.495
1640.3
1650.441
1660.537
1670.315
1680.812
1690.288
170.422
180.958
190.972
20.267
200.932
210.337
220.419
230.38
240.455
250.866
260.309
270.292
280.92
290.76
30.367
300.0286
310.663
320.0457
330.0374
340.565
350.00706
360.904
370.736
380.394
390.242
40.17
400.0081
410.288
420.765
430.697
440.595
450.208
460.962
470.697
480.436
490.661
50.53
500.173
510.807
520.276
530.573
540.657
550.377
560.203
570.884
580.674
590.241
60.154
600.291
610.586
620.414
630.194
640.393
650.334
660.0331
670.657
680.588
690.443
70.406
700.0846
710.38
720.841
730.0785
740.198
750.615
760.0861
770.00637
780.642
790.0189
80.522
800.418
810.144
820.0873
830.982
840.649
850.28
860.458
870.0195
880.972
890.162
90.81
900.261
910.417
920.683
930.58
940.443
950.333
960.695
970.83
980.974
996.99081e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11330


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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