FF:11518-119H6: Difference between revisions

Latest revision as of 18:06, 4 June 2020

Name:	Renal Mesangial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11333
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	mesangial cell, intraglomerular
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC4205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005643

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11333		CAGE		DRX008434		DRR009306

Accession ID Hg19

Library id		BAM		CTSS
CNhs11333		DRZ000731		DRZ002116

Accession ID Hg38

Library id		BAM		CTSS
CNhs11333		DRZ012081		DRZ013466

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005643

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10013.CCGTCC		sRNA-Seq		DRX037217		DRR041583

Accession ID Hg19

Library id		BAM		CTSS
SRhi10013.CCGTCC		DRZ007225

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.125
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.09
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.104
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0621
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.391
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.177
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0394
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0943
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.104
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.283
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.366
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.00171
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.372
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.104
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.258
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11333

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.771
MA0003.1	MA0003.1	0.34
MA0004.1	MA0004.1	0.745
MA0006.1	MA0006.1	0.149
MA0007.1	MA0007.1	0.155
MA0009.1	MA0009.1	0.587
MA0014.1	MA0014.1	0.85
MA0017.1	MA0017.1	0.26
MA0018.2	MA0018.2	0.144
MA0019.1	MA0019.1	0.0936
MA0024.1	MA0024.1	0.539
MA0025.1	MA0025.1	0.827
MA0027.1	MA0027.1	0.468
MA0028.1	MA0028.1	0.102
MA0029.1	MA0029.1	0.377
MA0030.1	MA0030.1	0.343
MA0031.1	MA0031.1	0.127
MA0035.2	MA0035.2	0.0757
MA0038.1	MA0038.1	2.80432e-5
MA0039.2	MA0039.2	0.0853
MA0040.1	MA0040.1	0.293
MA0041.1	MA0041.1	0.257
MA0042.1	MA0042.1	0.761
MA0043.1	MA0043.1	0.0373
MA0046.1	MA0046.1	3.31761e-16
MA0047.2	MA0047.2	0.102
MA0048.1	MA0048.1	0.86
MA0050.1	MA0050.1	7.90881e-6
MA0051.1	MA0051.1	4.09739e-4
MA0052.1	MA0052.1	0.329
MA0055.1	MA0055.1	0.0682
MA0057.1	MA0057.1	0.136
MA0058.1	MA0058.1	0.922
MA0059.1	MA0059.1	0.833
MA0060.1	MA0060.1	4.17789e-6
MA0061.1	MA0061.1	0.898
MA0062.2	MA0062.2	0.00266
MA0065.2	MA0065.2	0.145
MA0066.1	MA0066.1	0.85
MA0067.1	MA0067.1	0.0108
MA0068.1	MA0068.1	0.757
MA0069.1	MA0069.1	0.94
MA0070.1	MA0070.1	0.00327
MA0071.1	MA0071.1	0.668
MA0072.1	MA0072.1	0.97
MA0073.1	MA0073.1	0.823
MA0074.1	MA0074.1	0.261
MA0076.1	MA0076.1	0.00729
MA0077.1	MA0077.1	0.0622
MA0078.1	MA0078.1	0.881
MA0079.2	MA0079.2	0.495
MA0080.2	MA0080.2	1.95336e-6
MA0081.1	MA0081.1	0.0166
MA0083.1	MA0083.1	1.99763e-6
MA0084.1	MA0084.1	0.292
MA0087.1	MA0087.1	0.652
MA0088.1	MA0088.1	0.94
MA0090.1	MA0090.1	0.00115
MA0091.1	MA0091.1	0.671
MA0092.1	MA0092.1	0.997
MA0093.1	MA0093.1	0.811
MA0099.2	MA0099.2	0.00123
MA0100.1	MA0100.1	0.167
MA0101.1	MA0101.1	0.576
MA0102.2	MA0102.2	1.34639e-4
MA0103.1	MA0103.1	0.0274
MA0104.2	MA0104.2	0.288
MA0105.1	MA0105.1	0.572
MA0106.1	MA0106.1	0.178
MA0107.1	MA0107.1	0.952
MA0108.2	MA0108.2	5.98326e-7
MA0111.1	MA0111.1	0.133
MA0112.2	MA0112.2	0.28
MA0113.1	MA0113.1	0.201
MA0114.1	MA0114.1	0.145
MA0115.1	MA0115.1	0.474
MA0116.1	MA0116.1	0.477
MA0117.1	MA0117.1	0.124
MA0119.1	MA0119.1	0.765
MA0122.1	MA0122.1	0.949
MA0124.1	MA0124.1	0.582
MA0125.1	MA0125.1	0.234
MA0131.1	MA0131.1	0.274
MA0135.1	MA0135.1	0.125
MA0136.1	MA0136.1	9.80559e-6
MA0137.2	MA0137.2	0.527
MA0138.2	MA0138.2	0.872
MA0139.1	MA0139.1	0.76
MA0140.1	MA0140.1	0.316
MA0141.1	MA0141.1	0.834
MA0142.1	MA0142.1	0.225
MA0143.1	MA0143.1	0.415
MA0144.1	MA0144.1	0.94
MA0145.1	MA0145.1	0.115
MA0146.1	MA0146.1	0.063
MA0147.1	MA0147.1	0.432
MA0148.1	MA0148.1	0.646
MA0149.1	MA0149.1	0.626
MA0150.1	MA0150.1	0.331
MA0152.1	MA0152.1	0.27
MA0153.1	MA0153.1	1.80008e-8
MA0154.1	MA0154.1	0.611
MA0155.1	MA0155.1	0.0399
MA0156.1	MA0156.1	2.86824e-4
MA0157.1	MA0157.1	0.203
MA0159.1	MA0159.1	0.908
MA0160.1	MA0160.1	0.67
MA0162.1	MA0162.1	0.195
MA0163.1	MA0163.1	0.696
MA0164.1	MA0164.1	0.483
MA0258.1	MA0258.1	0.766
MA0259.1	MA0259.1	0.231

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11333

Novel motif	Logo	P-value
1	1	0.0985
10	10	0.0239
100	100	0.476
101	101	0.16
102	102	0.537
103	103	0.531
104	104	0.376
105	105	0.161
106	106	0.304
107	107	0.0544
108	108	0.567
109	109	0.473
11	11	0.534
110	110	0.565
111	111	0.435
112	112	0.319
113	113	0.85
114	114	0.15
115	115	0.805
116	116	0.615
117	117	0.353
118	118	0.807
119	119	0.997
12	12	0.632
120	120	0.81
121	121	0.684
122	122	0.12
123	123	5.66446e-4
124	124	0.486
125	125	0.268
126	126	0.766
127	127	0.376
128	128	0.813
129	129	0.306
13	13	0.917
130	130	0.279
131	131	0.378
132	132	0.0757
133	133	0.34
134	134	0.761
135	135	0.964
136	136	0.892
137	137	0.0381
138	138	0.175
139	139	0.557
14	14	0.625
140	140	0.69
141	141	0.0433
142	142	0.603
143	143	0.345
144	144	0.865
145	145	0.995
146	146	0.0288
147	147	0.581
148	148	0.073
149	149	0.532
15	15	0.284
150	150	0.373
151	151	0.789
152	152	0.0973
153	153	0.103
154	154	0.151
155	155	0.205
156	156	0.339
157	157	0.688
158	158	0.199
159	159	0.967
16	16	0.739
160	160	0.116
161	161	0.574
162	162	0.193
163	163	0.69
164	164	0.141
165	165	0.13
166	166	0.877
167	167	0.0595
168	168	0.778
169	169	0.141
17	17	0.592
18	18	0.859
19	19	0.43
2	2	0.239
20	20	0.613
21	21	0.766
22	22	0.199
23	23	0.688
24	24	0.935
25	25	0.402
26	26	0.401
27	27	0.297
28	28	0.401
29	29	0.397
3	3	0.534
30	30	0.0319
31	31	0.449
32	32	0.0233
33	33	0.574
34	34	0.244
35	35	0.0746
36	36	0.712
37	37	0.541
38	38	0.991
39	39	0.172
4	4	0.421
40	40	0.028
41	41	0.265
42	42	0.577
43	43	0.879
44	44	0.909
45	45	0.164
46	46	0.754
47	47	0.97
48	48	0.687
49	49	0.496
5	5	0.329
50	50	0.351
51	51	0.655
52	52	0.491
53	53	0.341
54	54	0.569
55	55	0.561
56	56	0.272
57	57	0.533
58	58	0.292
59	59	0.0692
6	6	0.219
60	60	0.933
61	61	0.434
62	62	0.238
63	63	0.632
64	64	0.616
65	65	0.146
66	66	0.119
67	67	0.488
68	68	0.233
69	69	0.168
7	7	0.561
70	70	0.853
71	71	0.509
72	72	0.335
73	73	0.1
74	74	0.261
75	75	0.36
76	76	0.0254
77	77	0.0613
78	78	0.636
79	79	0.732
8	8	0.427
80	80	0.801
81	81	0.196
82	82	0.605
83	83	0.803
84	84	0.444
85	85	0.531
86	86	0.518
87	87	0.365
88	88	0.501
89	89	0.309
9	9	0.492
90	90	0.00265
91	91	0.576
92	92	0.656
93	93	0.455
94	94	0.438
95	95	0.766
96	96	0.557
97	97	0.72
98	98	0.626
99	99	1.58116e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11333

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000154 human renal mesangial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0000650 (mesangial cell)
1000500 (kidney interstitial cell)
1000618 (juxtaglomerular complex cell)
1001318 (renal interstitial pericyte)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
1000612 (kidney corpuscule cell)
0002173 (extraglomerular mesangial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0003891 (stroma)
0005172 (abdomen element)
0003567 (abdomen connective tissue)
0003838 (abdominal segment connective tissue)
0003586 (trunk connective tissue)
0010317 (germ layer / neural crest derived structure)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0005169 (interstitial tissue)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0002321 (extraglomerular mesangium)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0005215 (kidney interstitium)
0001229 (renal corpuscle)
0002303 (juxtaglomerular apparatus)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
0002319 (mesangium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000154 (human renal mesangial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000926,UBERON:0000080,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0005103,UBERON:0000083,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0005291,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0003104,UBERON:0005172,UBERON:0000464,UBERON:0003567,UBERON:0009201,UBERON:0005256,UBERON:0003918,UBERON:0003838,UBERON:0003586,UBERON:0006598,UBERON:0003886,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0001231,UBERON:0004810,UBERON:0002532,UBERON:0006553,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0001285,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0001008,UBERON:0003074,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0003887,UBERON:0002319,UBERON:0002120,UBERON:0009142,UBERON:0003081,UBERON:0003064,UBERON:0001230,UBERON:0004875,UBERON:0003220,UBERON:0005749,UBERON:0006603,UBERON:0004876,UBERON:0004199,UBERON:0004208,UBERON:0005095,UBERON:0005721,UBERON:0005754,UBERON:0003060,UBERON:0004209,UBERON:0004198,UBERON:0007687,UBERON:0007297
+|DRA_sample_Accession=CAGE@SAMD00005643
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0000066,CL:0002371,CL:0000219,CL:0000183,CL:0000630,CL:0000004,CL:0000134,CL:0000255,CL:0000669,CL:0000650,CL:1000618,CL:1001318,CL:1000497,CL:0002518,CL:0002681,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:1000449,CL:1000746,CL:0002173,CL:1000500
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005643
+|accession_numbers=CAGE;DRX008434;DRR009306;DRZ000731;DRZ002116;DRZ012081;DRZ013466
+|accession_numbers_RNASeq=sRNA-Seq;DRX037217;DRR041583;DRZ007225
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0005172,UBERON:0003567,UBERON:0003838,UBERON:0003586,UBERON:0010317,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0004810,UBERON:0001285,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0002319
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0000650,CL:1000500,CL:1000618,CL:1001318,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:0002173
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000154
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.99!96.19!PAX8;;chr6:134210243..134210257,+!p1@TCF21!1.83!67.19!TCF21;;chr17:36105042..36105060,-!p1@HNF1B!1.68!46.60!HNF1B;;chr11:61520075..61520136,+!p1@C11orf9!1.58!76.41!C11orf9;;chr1:201979743..201979762,+!p1@ELF3!1.58!37.12!ELF3;;chr7:27205136..27205164,-!p1@HOXA9!1.57!36.31!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.57!36.04!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!1.57!35.76!HOXB9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.56!35.49!HOXC5;;chr11:32457075..32457095,-!p1@WT1!1.56!34.95!WT1;;chr16:86600426..86600441,+!p1@FOXC2!1.55!82.91!FOXC2;;chr7:27196217..27196246,-!p2@HOXA7!1.55!34.14!HOXA7;;chr1:201979703..201979721,+!p2@ELF3!1.48!28.99!ELF3;;chr2:176969228..176969260,+!p1@HOXD11!1.40!23.84!HOXD11;;chr12:54393880..54393962,+!p1@HOXC9!1.37!22.22!HOXC9;;chr12:54379029..54379057,+!p2@HOXC10!1.36!21.95!HOXC10;;chr12:54378923..54378966,+!p1@HOXC10!1.33!20.59!HOXC10;;chr7:27224842..27224872,-!p1@HOXA11!1.33!20.59!HOXA11;;chr7:27224795..27224840,-!p2@HOXA11!1.32!19.78!HOXA11;;chr5:72744594..72744609,-!p1@FOXD1!1.31!86.16!FOXD1;;chr17:35294075..35294102,+!p1@ENST00000559335!1.27!17.61!LHX1;;chr7:27192185..27192209,-!p1@HOXA3!1.26!17.07!HOXA3;;chr2:45236540..45236577,-!p1@SIX2!1.25!16.80!SIX2;;chr6:34204921..34204939,+!p3@HMGA1!1.24!485.27!HMGA1;;chr7:27213893..27213954,-!p1@HOXA10!1.22!15.71!HOXA10;;chr7:27153454..27153469,-!p2@HOXA3!1.21!15.17!HOXA3;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.23!NR2F1;;chr17:46688334..46688385,-!p1@HOXB7!1.11!17.34!HOXB7;;chr16:86544113..86544145,+!p1@FOXF1!1.10!14.36!FOXF1;;chr7:27196196..27196210,-!p5@HOXA7!1.10!11.65!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.10!11.65!HOXA9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.08!11.65!GLIS1;;chr2:176972000..176972025,+!p4@HOXD11!1.06!10.57!HOXD11;;chr12:66218255..66218304,+!p3@HMGA2!1.05!27.91!HMGA2;;chr15:96874145..96874166,+!p7@NR2F2!1.03!18.70!NR2F2;;chr10:102505327..102505344,+!p1@PAX2!1.02!9.48!PAX2;;chr2:176969097..176969109,+!p3@HOXD11!1.02!9.48!HOXD11;;chr2:176969179..176969226,+!p2@HOXD11!1.02!9.48!HOXD11;;chr2:121493425..121493474,+!p1@GLI2!1.00!20.05!GLI2;;chr10:102505493..102505546,+!p2@PAX2!1.00!8.94!PAX2;;chr15:96874012..96874042,+!p2@NR2F2!0.99!79.93!NR2F2;;chr12:66218212..66218244,+!p5@HMGA2!0.98!12.46!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.82!FOXD1;;chr11:32457413..32457431,-!p2@WT1!0.96!8.13!WT1;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.13!HOXB8;;chr2:45236579..45236596,-!p2@SIX2!0.96!8.13!SIX2;;chr15:96869114..96869160,+!p11@NR2F2!0.94!10.57!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.92!11.65!ZFP64;;chr19:45260775..45260838,+!p5@BCL3!0.92!9.75!BCL3;;chr6:34204672..34204692,+!p1@HMGA1!0.91!835.06!HMGA1;;chr17:46622070..46622109,-!p1@HOXB2!0.91!16.53!HOXB2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.91!7.04!HOXC5;;chr7:27183263..27183284,-!p2@HOXA5!0.91!7.04!HOXA5;;chr15:96874244..96874259,+!p5@NR2F2!0.90!17.34!NR2F2;;chr19:49864746..49864780,-!p2@TEAD2!0.90!9.75!TEAD2;;chr2:176973498..176973524,+!p1@HOXD10!0.89!6.77!HOXD10;;chr2:5832508..5832524,+!p1@SOX11!0.89!6.77!SOX11;;chr7:27170359..27170381,-!p1@HOXA4!0.89!6.77!HOXA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.49!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!0.88!26.28!SIX1;;chr1:151032922..151032951,+!p2@MLLT11!0.88!11.11!MLLT11;;chr5:72743793..72743855,-!p4@FOXD1!0.88!7.86!FOXD1;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.50!FOXC2;;chr15:96869255..96869291,+!p6@NR2F2!0.87!11.92!NR2F2;;chr2:176994408..176994492,+!p1@HOXD8!0.86!6.23!HOXD8;;chr14:21994337..21994442,-!p1@SALL2!0.85!17.61!SALL2;;chr2:25475120..25475176,-!p2@DNMT3A!0.85!8.40!DNMT3A;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.26!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!0.84!5.96!HOXC8;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.96!SALL1;;chr15:96873861..96873872,+!p9@NR2F2!0.83!12.46!NR2F2;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.13!HOXB7;;chr10:102495147..102495159,+!p4@PAX2!0.83!5.69!PAX2;;chr17:46622114..46622138,-!p4@HOXB2!0.82!8.94!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!0.82!6.50!HOXB2;;chr7:27219833..27219845,-!p7@HOXA10!0.81!5.42!HOXA10;;chr1:151032860..151032918,+!p1@MLLT11!0.80!68.01!MLLT11;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!57.71!GLIS2;;chr1:209979467..209979494,-!p1@IRF6!0.80!5.96!IRF6;;chr7:44143925..44143970,+!p1@AEBP1!0.79!126.26!AEBP1;;chr12:3069037..3069119,+!p2@TEAD4!0.79!18.97!TEAD4;;chr10:102505954..102505973,+!p3@PAX2!0.79!5.15!PAX2;;chr7:27153428..27153440,-!p3@HOXA3!0.79!5.15!HOXA3;;chr5:72744562..72744573,-!p3@FOXD1!0.77!6.23!FOXD1;;chr7:27183291..27183324,-!p1@HOXA5!0.77!4.88!HOXA5;;chr2:176971685..176971700,+!p6@HOXD11!0.77!4.88!HOXD11;;chr3:111314186..111314204,-!p1@ZBED2!0.77!4.88!ZBED2;;chr15:96869165..96869183,+!p20@NR2F2!0.77!4.88!NR2F2;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.26!GATA6;;chr15:37390850..37390909,-!p3@MEIS2!0.75!9.75!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.42!BNC1;;chr2:960123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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000669;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1001318;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003891;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor1.CNhs11333.11518-119H6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11518-119H6
-|is_a=EFO:0002091;;FF:0000002;;FF:0000154;;FF:0000210
+|is_a=EFO:0002091;;FF:0000154
+|is_obsolete=
+|library_id=CNhs11333
+|library_id_phase_based=2:CNhs11333
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11518
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.CCGTCC.11518
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11518
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.CCGTCC.11518
 |name=Renal Mesangial Cells, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11333,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10013,,,
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 |rna_box=119
 |rna_catalog_number=SC4205
@@ Line 56: / Line 82: @@
 |rna_tube_id=119H6
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10013.CCGTCC
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 97: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.57522176585946e-211!GO:0005737;cytoplasm;4.52696282857001e-194!GO:0043226;organelle;3.3876024511921e-170!GO:0043229;intracellular organelle;4.76241966300581e-170!GO:0043231;intracellular membrane-bound organelle;7.79261903498386e-167!GO:0043227;membrane-bound organelle;1.36856009442538e-166!GO:0044444;cytoplasmic part;9.77000319100795e-141!GO:0044422;organelle part;1.87882334309786e-130!GO:0044446;intracellular organelle part;3.97753142999085e-129!GO:0032991;macromolecular complex;1.36932461297815e-81!GO:0005515;protein binding;7.14861446506451e-76!GO:0030529;ribonucleoprotein complex;2.86091789914362e-74!GO:0005739;mitochondrion;4.54599632245194e-73!GO:0044238;primary metabolic process;1.57672280408495e-71!GO:0044237;cellular metabolic process;4.26095623793802e-71!GO:0043170;macromolecule metabolic process;1.59054069206489e-62!GO:0043233;organelle lumen;7.80617686493534e-61!GO:0031974;membrane-enclosed lumen;7.80617686493534e-61!GO:0044428;nuclear part;1.98986623387091e-54!GO:0031090;organelle membrane;9.49444382225769e-53!GO:0003723;RNA binding;4.14935411798134e-52!GO:0005634;nucleus;5.97838001223029e-52!GO:0005840;ribosome;6.89563525591538e-51!GO:0044429;mitochondrial part;5.00412730340604e-48!GO:0009058;biosynthetic process;6.90581277745809e-46!GO:0016043;cellular component organization and biogenesis;2.97713960535315e-45!GO:0003735;structural constituent of ribosome;7.39085744039724e-45!GO:0019538;protein metabolic process;1.21961935769946e-44!GO:0006412;translation;2.97311467038976e-44!GO:0044249;cellular biosynthetic process;1.04909937625273e-41!GO:0031967;organelle envelope;1.61982550042536e-40!GO:0043234;protein complex;2.50656654848397e-40!GO:0031975;envelope;4.1101524821666e-40!GO:0044260;cellular macromolecule metabolic process;2.28327218982269e-39!GO:0044267;cellular protein metabolic process;8.91655131236284e-39!GO:0033279;ribosomal subunit;1.60731078816087e-38!GO:0009059;macromolecule biosynthetic process;6.18284633555586e-38!GO:0015031;protein transport;2.76433210049574e-37!GO:0033036;macromolecule localization;6.99545186742944e-37!GO:0006396;RNA processing;6.93077150448842e-35!GO:0005829;cytosol;1.42475751752056e-34!GO:0008104;protein localization;2.95158045751654e-34!GO:0045184;establishment of protein localization;3.57165593010529e-34!GO:0031981;nuclear lumen;4.28553499095349e-33!GO:0005740;mitochondrial envelope;1.52661196709864e-32!GO:0043283;biopolymer metabolic process;1.66693664942063e-31!GO:0006996;organelle organization and biogenesis;4.91587875655231e-31!GO:0046907;intracellular transport;4.9926994797519e-31!GO:0031966;mitochondrial membrane;3.55002813988187e-30!GO:0019866;organelle inner membrane;7.10432138000475e-30!GO:0043228;non-membrane-bound organelle;2.24832697649266e-29!GO:0043232;intracellular non-membrane-bound organelle;2.24832697649266e-29!GO:0005743;mitochondrial inner membrane;1.45185798121271e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.12784111599497e-28!GO:0065003;macromolecular complex assembly;4.01288301369904e-27!GO:0016071;mRNA metabolic process;8.98564367654014e-27!GO:0010467;gene expression;9.18370646562821e-27!GO:0006886;intracellular protein transport;7.56327020660777e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.32167217497717e-25!GO:0008380;RNA splicing;9.66324730967586e-25!GO:0022607;cellular component assembly;1.99023538590736e-24!GO:0006397;mRNA processing;8.79812864333914e-23!GO:0044445;cytosolic part;1.26596609534911e-22!GO:0006259;DNA metabolic process;4.35549456816756e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.16706899122405e-21!GO:0012505;endomembrane system;1.49602285440902e-20!GO:0015934;large ribosomal subunit;1.73498684243081e-20!GO:0006119;oxidative phosphorylation;8.6591108069137e-20!GO:0051649;establishment of cellular localization;1.03539144362592e-19!GO:0051641;cellular localization;1.584376472335e-19!GO:0005654;nucleoplasm;1.71489209260966e-19!GO:0031980;mitochondrial lumen;2.10455776461749e-19!GO:0005759;mitochondrial matrix;2.10455776461749e-19!GO:0005783;endoplasmic reticulum;4.18626777241997e-19!GO:0015935;small ribosomal subunit;5.0227543968594e-19!GO:0044455;mitochondrial membrane part;5.83505999308409e-19!GO:0005681;spliceosome;1.57312065867061e-18!GO:0007049;cell cycle;1.67472823507069e-18!GO:0048770;pigment granule;1.9329514251367e-18!GO:0042470;melanosome;1.9329514251367e-18!GO:0006457;protein folding;1.8861031832074e-17!GO:0005794;Golgi apparatus;2.3449049010144e-17!GO:0044451;nucleoplasm part;3.07795111552236e-16!GO:0051186;cofactor metabolic process;4.31841286889019e-16!GO:0044432;endoplasmic reticulum part;1.21341874313144e-15!GO:0005746;mitochondrial respiratory chain;1.51290504347229e-15!GO:0000166;nucleotide binding;2.42084436947464e-15!GO:0008134;transcription factor binding;4.23141365849032e-15!GO:0016462;pyrophosphatase activity;4.98681698138653e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.05042090311297e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.39441381198167e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;7.46207639659184e-15!GO:0022402;cell cycle process;1.01983014560876e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.48256203714256e-14!GO:0016874;ligase activity;1.56603205105146e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.1733612998507e-14!GO:0003954;NADH dehydrogenase activity;2.1733612998507e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.1733612998507e-14!GO:0005761;mitochondrial ribosome;3.0122085206523e-14!GO:0000313;organellar ribosome;3.0122085206523e-14!GO:0017111;nucleoside-triphosphatase activity;4.48162800440251e-14!GO:0005730;nucleolus;4.65304578508577e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.44970531104384e-13!GO:0044265;cellular macromolecule catabolic process;1.95705727940437e-13!GO:0000278;mitotic cell cycle;2.08260739978978e-13!GO:0043412;biopolymer modification;2.94725362033405e-13!GO:0012501;programmed cell death;4.41401444256929e-13!GO:0006605;protein targeting;6.19082739110273e-13!GO:0006512;ubiquitin cycle;7.86152348382248e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.25023529694045e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.25023529694045e-12!GO:0042773;ATP synthesis coupled electron transport;1.25023529694045e-12!GO:0006915;apoptosis;1.32250866499754e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.15475854458228e-12!GO:0045271;respiratory chain complex I;2.15475854458228e-12!GO:0005747;mitochondrial respiratory chain complex I;2.15475854458228e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.69814531846911e-12!GO:0006732;coenzyme metabolic process;2.69814531846911e-12!GO:0051082;unfolded protein binding;3.54748923218951e-12!GO:0006464;protein modification process;4.29447238709839e-12!GO:0044248;cellular catabolic process;4.99273301859226e-12!GO:0009057;macromolecule catabolic process;5.47820219485044e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.29622072351725e-12!GO:0022618;protein-RNA complex assembly;7.69259407935415e-12!GO:0008219;cell death;1.02980884808392e-11!GO:0016265;death;1.02980884808392e-11!GO:0043285;biopolymer catabolic process;1.15507145021606e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.97001541893337e-11!GO:0009055;electron carrier activity;3.5327999804505e-11!GO:0005789;endoplasmic reticulum membrane;4.02067611733749e-11!GO:0032553;ribonucleotide binding;5.83047879242233e-11!GO:0032555;purine ribonucleotide binding;5.83047879242233e-11!GO:0048193;Golgi vesicle transport;7.85267562196184e-11!GO:0016192;vesicle-mediated transport;8.49645228316487e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.00749770511544e-10!GO:0003676;nucleic acid binding;1.03871208210546e-10!GO:0017076;purine nucleotide binding;1.08098784607448e-10!GO:0051276;chromosome organization and biogenesis;1.31400971968187e-10!GO:0019941;modification-dependent protein catabolic process;1.5142893429697e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.5142893429697e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.64781480183774e-10!GO:0044257;cellular protein catabolic process;1.86971642145212e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;2.15858309637771e-10!GO:0000375;RNA splicing, via transesterification reactions;2.15858309637771e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.15858309637771e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.34107846554231e-10!GO:0048523;negative regulation of cellular process;5.02500651653803e-10!GO:0008135;translation factor activity, nucleic acid binding;6.52990503648121e-10!GO:0003712;transcription cofactor activity;7.32306570549412e-10!GO:0006323;DNA packaging;7.60565139458249e-10!GO:0051726;regulation of cell cycle;8.54841280627663e-10!GO:0030163;protein catabolic process;1.02298221592608e-09!GO:0000074;regulation of progression through cell cycle;1.06289186271737e-09!GO:0043067;regulation of programmed cell death;1.74324658188744e-09!GO:0042981;regulation of apoptosis;2.30625289917505e-09!GO:0006974;response to DNA damage stimulus;2.43916168681003e-09!GO:0044427;chromosomal part;2.47328906548251e-09!GO:0042254;ribosome biogenesis and assembly;2.61769085148041e-09!GO:0005635;nuclear envelope;2.74204548789142e-09!GO:0022403;cell cycle phase;2.87579454451113e-09!GO:0043687;post-translational protein modification;3.19565339880069e-09!GO:0005694;chromosome;3.64121008162885e-09!GO:0005793;ER-Golgi intermediate compartment;4.87369436280424e-09!GO:0006163;purine nucleotide metabolic process;5.31840859402573e-09!GO:0009259;ribonucleotide metabolic process;6.01528550506168e-09!GO:0048519;negative regulation of biological process;6.78572710107906e-09!GO:0051188;cofactor biosynthetic process;9.10538191286618e-09!GO:0005524;ATP binding;9.93432825543857e-09!GO:0016070;RNA metabolic process;1.1014052185606e-08!GO:0009150;purine ribonucleotide metabolic process;1.11496589093691e-08!GO:0006461;protein complex assembly;1.14349955797677e-08!GO:0007067;mitosis;1.22202020771635e-08!GO:0032559;adenyl ribonucleotide binding;1.36720253370919e-08!GO:0000785;chromatin;1.39624740702111e-08!GO:0000087;M phase of mitotic cell cycle;1.40852152507423e-08!GO:0031965;nuclear membrane;1.4481917134753e-08!GO:0006399;tRNA metabolic process;2.22762381584989e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.30472140686323e-08!GO:0006164;purine nucleotide biosynthetic process;2.33229841411425e-08!GO:0006913;nucleocytoplasmic transport;2.33673678021946e-08!GO:0065004;protein-DNA complex assembly;2.39453490332455e-08!GO:0016740;transferase activity;2.67056210374032e-08!GO:0030554;adenyl nucleotide binding;3.09222294581593e-08!GO:0006333;chromatin assembly or disassembly;3.7536887994533e-08!GO:0007005;mitochondrion organization and biogenesis;3.84429086953457e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.96774736727086e-08!GO:0009260;ribonucleotide biosynthetic process;4.55027874790687e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.6499689647624e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.69305561741795e-08!GO:0044431;Golgi apparatus part;4.9315116154745e-08!GO:0051169;nuclear transport;5.08358369131378e-08!GO:0031988;membrane-bound vesicle;6.26617896459323e-08!GO:0008639;small protein conjugating enzyme activity;8.00300946540615e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.0539164332948e-08!GO:0009141;nucleoside triphosphate metabolic process;8.11995275567411e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.58908745357343e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.4138702188714e-08!GO:0044453;nuclear membrane part;1.11245249246884e-07!GO:0006281;DNA repair;1.26441114553323e-07!GO:0016604;nuclear body;1.26441114553323e-07!GO:0004842;ubiquitin-protein ligase activity;1.36483327495076e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.6091862259236e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.6091862259236e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.97944051819223e-07!GO:0043069;negative regulation of programmed cell death;1.98647053154886e-07!GO:0006334;nucleosome assembly;2.13315797123761e-07!GO:0006446;regulation of translational initiation;2.37245643348866e-07!GO:0009719;response to endogenous stimulus;2.37293903656549e-07!GO:0009060;aerobic respiration;2.45938737761927e-07!GO:0016491;oxidoreductase activity;2.79980077672441e-07!GO:0019787;small conjugating protein ligase activity;2.83057097674215e-07!GO:0003743;translation initiation factor activity;2.95363305575637e-07!GO:0065002;intracellular protein transport across a membrane;3.03371840103515e-07!GO:0008565;protein transporter activity;3.06665048798767e-07!GO:0031497;chromatin assembly;3.23987837227367e-07!GO:0006413;translational initiation;3.93697007225156e-07!GO:0006260;DNA replication;3.95073062186271e-07!GO:0009056;catabolic process;4.90233059843024e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.14971185366341e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.14971185366341e-07!GO:0043066;negative regulation of apoptosis;5.38355049136696e-07!GO:0017038;protein import;5.66301340094594e-07!GO:0003924;GTPase activity;5.79698407954128e-07!GO:0006916;anti-apoptosis;6.71804053446072e-07!GO:0006366;transcription from RNA polymerase II promoter;6.86947520368157e-07!GO:0015986;ATP synthesis coupled proton transport;7.18857100164163e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.18857100164163e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.45547325231496e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.45547325231496e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.45547325231496e-07!GO:0031982;vesicle;7.62329932283884e-07!GO:0031410;cytoplasmic vesicle;7.72346139367966e-07!GO:0051301;cell division;8.09241087351077e-07!GO:0050794;regulation of cellular process;9.53365701976911e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.57351003472107e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.57351003472107e-07!GO:0030120;vesicle coat;9.6000785080896e-07!GO:0030662;coated vesicle membrane;9.6000785080896e-07!GO:0009117;nucleotide metabolic process;9.75931098594706e-07!GO:0016881;acid-amino acid ligase activity;9.83707854295159e-07!GO:0042623;ATPase activity, coupled;1.06773777734483e-06!GO:0045333;cellular respiration;1.09558727065908e-06!GO:0005768;endosome;1.26669946943787e-06!GO:0046034;ATP metabolic process;1.58977381868838e-06!GO:0048475;coated membrane;1.59471304541065e-06!GO:0030117;membrane coat;1.59471304541065e-06!GO:0005788;endoplasmic reticulum lumen;1.62969342969711e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.6838471464156e-06!GO:0006364;rRNA processing;1.7781248237278e-06!GO:0009108;coenzyme biosynthetic process;1.8284488823232e-06!GO:0043038;amino acid activation;1.98109692589254e-06!GO:0006418;tRNA aminoacylation for protein translation;1.98109692589254e-06!GO:0043039;tRNA aminoacylation;1.98109692589254e-06!GO:0015630;microtubule cytoskeleton;2.04846100013173e-06!GO:0000279;M phase;2.08547298268252e-06!GO:0016563;transcription activator activity;2.23625856427997e-06!GO:0000139;Golgi membrane;2.39196442339073e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.05496906495659e-06!GO:0016887;ATPase activity;3.30520333915443e-06!GO:0045259;proton-transporting ATP synthase complex;3.38920296602479e-06!GO:0003714;transcription corepressor activity;3.803691853681e-06!GO:0016072;rRNA metabolic process;3.81676475058073e-06!GO:0008654;phospholipid biosynthetic process;3.8259253945575e-06!GO:0016564;transcription repressor activity;4.09842991737428e-06!GO:0005643;nuclear pore;4.18141695473291e-06!GO:0051246;regulation of protein metabolic process;4.5034197733718e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.63757976290178e-06!GO:0045786;negative regulation of progression through cell cycle;4.70749957768914e-06!GO:0019829;cation-transporting ATPase activity;5.06669945243366e-06!GO:0016607;nuclear speck;5.67664535802462e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.6903936973542e-06!GO:0016853;isomerase activity;6.12462167956768e-06!GO:0006099;tricarboxylic acid cycle;7.07420421124498e-06!GO:0046356;acetyl-CoA catabolic process;7.07420421124498e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.06064759737935e-06!GO:0006754;ATP biosynthetic process;9.16767020772156e-06!GO:0006753;nucleoside phosphate metabolic process;9.16767020772156e-06!GO:0005762;mitochondrial large ribosomal subunit;9.30943597495204e-06!GO:0000315;organellar large ribosomal subunit;9.30943597495204e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.05302783696234e-05!GO:0016568;chromatin modification;1.07816126608587e-05!GO:0044440;endosomal part;1.15338868414694e-05!GO:0010008;endosome membrane;1.15338868414694e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.1882716227337e-05!GO:0006084;acetyl-CoA metabolic process;1.32743906528556e-05!GO:0031324;negative regulation of cellular metabolic process;1.49308835062698e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.55113265877159e-05!GO:0006793;phosphorus metabolic process;1.69793967258309e-05!GO:0006796;phosphate metabolic process;1.69793967258309e-05!GO:0005773;vacuole;1.69793967258309e-05!GO:0031252;leading edge;1.76414812828879e-05!GO:0051329;interphase of mitotic cell cycle;1.86744410092166e-05!GO:0032446;protein modification by small protein conjugation;1.98315714567334e-05!GO:0005667;transcription factor complex;2.13980400879205e-05!GO:0051427;hormone receptor binding;2.35922957528891e-05!GO:0008610;lipid biosynthetic process;2.94606275207367e-05!GO:0016567;protein ubiquitination;3.06113134512465e-05!GO:0044262;cellular carbohydrate metabolic process;3.27683085619766e-05!GO:0016779;nucleotidyltransferase activity;3.33931955891465e-05!GO:0003697;single-stranded DNA binding;3.93176755128752e-05!GO:0051325;interphase;4.14860836282772e-05!GO:0046930;pore complex;4.30494266088366e-05!GO:0001558;regulation of cell growth;4.53158015666213e-05!GO:0051187;cofactor catabolic process;4.6699147459335e-05!GO:0035257;nuclear hormone receptor binding;4.70616886995857e-05!GO:0009892;negative regulation of metabolic process;5.18845270367873e-05!GO:0005905;coated pit;5.27049895225778e-05!GO:0045454;cell redox homeostasis;5.54963340473401e-05!GO:0009109;coenzyme catabolic process;5.66200639622479e-05!GO:0050789;regulation of biological process;5.69826245617575e-05!GO:0008361;regulation of cell size;6.15237362047693e-05!GO:0005770;late endosome;6.16346515226192e-05!GO:0019899;enzyme binding;6.97605255330948e-05!GO:0016049;cell growth;7.03663732294663e-05!GO:0006403;RNA localization;7.09820128908648e-05!GO:0004298;threonine endopeptidase activity;7.20465111382871e-05!GO:0050657;nucleic acid transport;7.96266962131837e-05!GO:0051236;establishment of RNA localization;7.96266962131837e-05!GO:0050658;RNA transport;7.96266962131837e-05!GO:0006752;group transfer coenzyme metabolic process;7.99459354860653e-05!GO:0005791;rough endoplasmic reticulum;8.27800223271535e-05!GO:0003899;DNA-directed RNA polymerase activity;9.24127178739307e-05!GO:0004386;helicase activity;9.74849473677823e-05!GO:0005798;Golgi-associated vesicle;0.000101217864161152!GO:0005525;GTP binding;0.000101606986975484!GO:0016310;phosphorylation;0.000111715952995651!GO:0007010;cytoskeleton organization and biogenesis;0.000114155180338901!GO:0008026;ATP-dependent helicase activity;0.000130312587494478!GO:0046474;glycerophospholipid biosynthetic process;0.000130312587494478!GO:0000245;spliceosome assembly;0.000132051533224155!GO:0000323;lytic vacuole;0.000144124015998985!GO:0005764;lysosome;0.000144124015998985!GO:0016787;hydrolase activity;0.000146087992081488!GO:0016859;cis-trans isomerase activity;0.000147834606785041!GO:0030133;transport vesicle;0.000151061070233687!GO:0048468;cell development;0.000151819632714602!GO:0003713;transcription coactivator activity;0.000162818989867466!GO:0030036;actin cytoskeleton organization and biogenesis;0.000163364684679045!GO:0030867;rough endoplasmic reticulum membrane;0.000163664871884492!GO:0016126;sterol biosynthetic process;0.00017076160369923!GO:0048522;positive regulation of cellular process;0.000171447355195374!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000174229775881581!GO:0051170;nuclear import;0.000186608217760786!GO:0007264;small GTPase mediated signal transduction;0.000191548191605168!GO:0000314;organellar small ribosomal subunit;0.000211133429212165!GO:0005763;mitochondrial small ribosomal subunit;0.000211133429212165!GO:0033116;ER-Golgi intermediate compartment membrane;0.000224954079387004!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00022559717827441!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000236928514230954!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000239441238338325!GO:0042802;identical protein binding;0.000240611936241859!GO:0046467;membrane lipid biosynthetic process;0.00026486644098335!GO:0043623;cellular protein complex assembly;0.000288717229198877!GO:0006606;protein import into nucleus;0.000319932767114191!GO:0016481;negative regulation of transcription;0.000329024456960041!GO:0009165;nucleotide biosynthetic process;0.000331576937407433!GO:0000786;nucleosome;0.000345996870128164!GO:0043566;structure-specific DNA binding;0.000353180119084303!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000353180119084303!GO:0015980;energy derivation by oxidation of organic compounds;0.000377385268850232!GO:0065009;regulation of a molecular function;0.000410507661324911!GO:0006626;protein targeting to mitochondrion;0.00043017778574012!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000431200046511269!GO:0030176;integral to endoplasmic reticulum membrane;0.000431200046511269!GO:0006695;cholesterol biosynthetic process;0.00043330641699415!GO:0008250;oligosaccharyl transferase complex;0.000497688801608773!GO:0006839;mitochondrial transport;0.000504811754217886!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000508673745761874!GO:0006091;generation of precursor metabolites and energy;0.000535055259614448!GO:0000151;ubiquitin ligase complex;0.0005468926421647!GO:0006613;cotranslational protein targeting to membrane;0.00058803702267061!GO:0032561;guanyl ribonucleotide binding;0.000621811772892521!GO:0019001;guanyl nucleotide binding;0.000621811772892521!GO:0005874;microtubule;0.000731313710111527!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000752682174705686!GO:0005048;signal sequence binding;0.000780721181144381!GO:0051789;response to protein stimulus;0.000854970979055719!GO:0006986;response to unfolded protein;0.000854970979055719!GO:0008092;cytoskeletal protein binding;0.000912329379507399!GO:0030029;actin filament-based process;0.000927049126409664!GO:0040008;regulation of growth;0.000930050613613621!GO:0043681;protein import into mitochondrion;0.00105766976181517!GO:0006650;glycerophospholipid metabolic process;0.00105772511496048!GO:0006082;organic acid metabolic process;0.00107055859807046!GO:0030118;clathrin coat;0.00110478326852108!GO:0048471;perinuclear region of cytoplasm;0.00111392560689441!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00111939752179226!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00119500848261607!GO:0019752;carboxylic acid metabolic process;0.00123763827387866!GO:0005813;centrosome;0.00124198500569535!GO:0051028;mRNA transport;0.00124916602359056!GO:0051920;peroxiredoxin activity;0.0012745776044153!GO:0007243;protein kinase cascade;0.0012798622761437!GO:0005885;Arp2/3 protein complex;0.00128357433501547!GO:0046489;phosphoinositide biosynthetic process;0.00135249875875638!GO:0018196;peptidyl-asparagine modification;0.00135841268046906!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00135841268046906!GO:0045792;negative regulation of cell size;0.00140344074849934!GO:0031968;organelle outer membrane;0.00153464480645304!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00153860854588647!GO:0043021;ribonucleoprotein binding;0.00158060964855709!GO:0019867;outer membrane;0.00167804779431283!GO:0030308;negative regulation of cell growth;0.001741642690304!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00182655405640679!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00182655405640679!GO:0019843;rRNA binding;0.00187145222947561!GO:0005769;early endosome;0.00203066607479872!GO:0030659;cytoplasmic vesicle membrane;0.00209435766523007!GO:0007006;mitochondrial membrane organization and biogenesis;0.00237122730178987!GO:0006414;translational elongation;0.00244764674807699!GO:0005815;microtubule organizing center;0.0025353163174875!GO:0008632;apoptotic program;0.00257660244314757!GO:0008033;tRNA processing;0.00264803183634121!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00279933612589609!GO:0003724;RNA helicase activity;0.00294475973770837!GO:0005819;spindle;0.00297921356592312!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00300989352928309!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00300989352928309!GO:0033673;negative regulation of kinase activity;0.00311500266956539!GO:0006469;negative regulation of protein kinase activity;0.00311500266956539!GO:0005741;mitochondrial outer membrane;0.0031271265525606!GO:0031902;late endosome membrane;0.00318844734849907!GO:0051168;nuclear export;0.00325602562156497!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00325602562156497!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00325602562156497!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00325602562156497!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00326738091446729!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00328194635973658!GO:0030658;transport vesicle membrane;0.00328283547290133!GO:0006612;protein targeting to membrane;0.0033587874035483!GO:0043488;regulation of mRNA stability;0.00341982105790523!GO:0043487;regulation of RNA stability;0.00341982105790523!GO:0030132;clathrin coat of coated pit;0.00344630503248204!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00344630503248204!GO:0015399;primary active transmembrane transporter activity;0.00344630503248204!GO:0005684;U2-dependent spliceosome;0.00352870893919061!GO:0016044;membrane organization and biogenesis;0.00374223131936138!GO:0004576;oligosaccharyl transferase activity;0.00375660117680607!GO:0051348;negative regulation of transferase activity;0.00383296738072282!GO:0030880;RNA polymerase complex;0.0039528734503716!GO:0006402;mRNA catabolic process;0.00398838793844144!GO:0045892;negative regulation of transcription, DNA-dependent;0.00424308783558208!GO:0030119;AP-type membrane coat adaptor complex;0.00446336516853707!GO:0017166;vinculin binding;0.00449413282898103!GO:0006818;hydrogen transport;0.00476684538494305!GO:0044433;cytoplasmic vesicle part;0.00483891338738935!GO:0006740;NADPH regeneration;0.00486595590749803!GO:0006098;pentose-phosphate shunt;0.00486595590749803!GO:0006778;porphyrin metabolic process;0.00488585003281682!GO:0033013;tetrapyrrole metabolic process;0.00488585003281682!GO:0006979;response to oxidative stress;0.00497736940438767!GO:0015992;proton transport;0.00502901805120462!GO:0035258;steroid hormone receptor binding;0.00502901805120462!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00506497042975261!GO:0051287;NAD binding;0.00523049063856046!GO:0043065;positive regulation of apoptosis;0.00544578589498344!GO:0005774;vacuolar membrane;0.00565392938945309!GO:0043284;biopolymer biosynthetic process;0.00566176595458103!GO:0006595;polyamine metabolic process;0.00566176595458103!GO:0005996;monosaccharide metabolic process;0.00566752882441622!GO:0030131;clathrin adaptor complex;0.00603781699215999!GO:0006007;glucose catabolic process;0.00628294694263748!GO:0007040;lysosome organization and biogenesis;0.00630142644719347!GO:0030027;lamellipodium;0.00654455515526425!GO:0045926;negative regulation of growth;0.00662122366028293!GO:0006779;porphyrin biosynthetic process;0.00662122366028293!GO:0033014;tetrapyrrole biosynthetic process;0.00662122366028293!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00665938750290983!GO:0043068;positive regulation of programmed cell death;0.00678674489742505!GO:0031072;heat shock protein binding;0.0069389144358492!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0074534650584869!GO:0009967;positive regulation of signal transduction;0.00754742442127205!GO:0030660;Golgi-associated vesicle membrane;0.0076357446662248!GO:0019318;hexose metabolic process;0.00782211451164129!GO:0030125;clathrin vesicle coat;0.00783898578956078!GO:0030665;clathrin coated vesicle membrane;0.00783898578956078!GO:0008637;apoptotic mitochondrial changes;0.00791835909531024!GO:0006520;amino acid metabolic process;0.00799089241741147!GO:0003684;damaged DNA binding;0.00828739345814554!GO:0004680;casein kinase activity;0.00844707475863946!GO:0008186;RNA-dependent ATPase activity;0.00852247493303007!GO:0008047;enzyme activator activity;0.00860389560536841!GO:0048487;beta-tubulin binding;0.0087248651455418!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00884371937627883!GO:0000428;DNA-directed RNA polymerase complex;0.00884371937627883!GO:0007033;vacuole organization and biogenesis;0.00903276748080395!GO:0048518;positive regulation of biological process;0.00937790037591724!GO:0046519;sphingoid metabolic process;0.00942533351607796!GO:0006401;RNA catabolic process;0.00973972081924821!GO:0006672;ceramide metabolic process;0.00981289911960261!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00986109550608412!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00986109550608412!GO:0016363;nuclear matrix;0.0100444577132353!GO:0042168;heme metabolic process;0.0102070516136355!GO:0006509;membrane protein ectodomain proteolysis;0.0102254731982836!GO:0033619;membrane protein proteolysis;0.0102254731982836!GO:0006383;transcription from RNA polymerase III promoter;0.0104086414694016!GO:0045893;positive regulation of transcription, DNA-dependent;0.0104218462316422!GO:0031301;integral to organelle membrane;0.0105440353011153!GO:0051252;regulation of RNA metabolic process;0.0105827916940272!GO:0016272;prefoldin complex;0.010602500667093!GO:0006497;protein amino acid lipidation;0.0106379903438346!GO:0007265;Ras protein signal transduction;0.01083521916811!GO:0016860;intramolecular oxidoreductase activity;0.0109622121906453!GO:0051101;regulation of DNA binding;0.0110366921884715!GO:0007051;spindle organization and biogenesis;0.0111743159744887!GO:0051087;chaperone binding;0.0111912448839667!GO:0001726;ruffle;0.0111912448839667!GO:0006261;DNA-dependent DNA replication;0.0112375546971911!GO:0006643;membrane lipid metabolic process;0.0113161466565435!GO:0012506;vesicle membrane;0.0116243031324324!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0119199364363683!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0119199364363683!GO:0006506;GPI anchor biosynthetic process;0.0119199364363683!GO:0050662;coenzyme binding;0.0119199364363683!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0120884472653434!GO:0045941;positive regulation of transcription;0.0120960431676848!GO:0008629;induction of apoptosis by intracellular signals;0.0122056911313208!GO:0030663;COPI coated vesicle membrane;0.0122056911313208!GO:0030126;COPI vesicle coat;0.0122056911313208!GO:0007050;cell cycle arrest;0.0125381263566233!GO:0006066;alcohol metabolic process;0.0126606460264715!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0127223143122034!GO:0015002;heme-copper terminal oxidase activity;0.0127223143122034!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0127223143122034!GO:0004129;cytochrome-c oxidase activity;0.0127223143122034!GO:0005862;muscle thin filament tropomyosin;0.0127235870558819!GO:0006783;heme biosynthetic process;0.0130533063845267!GO:0005765;lysosomal membrane;0.0133467839162144!GO:0044437;vacuolar part;0.014366996014126!GO:0003729;mRNA binding;0.0143958538025089!GO:0005975;carbohydrate metabolic process;0.0143958538025089!GO:0007346;regulation of progression through mitotic cell cycle;0.0144128326286088!GO:0019206;nucleoside kinase activity;0.0147940705048209!GO:0042158;lipoprotein biosynthetic process;0.0149450957321859!GO:0006917;induction of apoptosis;0.015120547024533!GO:0050790;regulation of catalytic activity;0.0151954531780768!GO:0065007;biological regulation;0.0152255499840533!GO:0006891;intra-Golgi vesicle-mediated transport;0.0152746389200631!GO:0008286;insulin receptor signaling pathway;0.0154346656535785!GO:0030384;phosphoinositide metabolic process;0.0154708275427625!GO:0030521;androgen receptor signaling pathway;0.0156541358614964!GO:0015631;tubulin binding;0.01598443536093!GO:0030134;ER to Golgi transport vesicle;0.0160249361293663!GO:0004674;protein serine/threonine kinase activity;0.0162712575699875!GO:0006289;nucleotide-excision repair;0.0162790689398673!GO:0030137;COPI-coated vesicle;0.0172278810202887!GO:0040029;regulation of gene expression, epigenetic;0.0173447031551976!GO:0006807;nitrogen compound metabolic process;0.0174136680089872!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0174374145220755!GO:0003711;transcription elongation regulator activity;0.0185835812255246!GO:0004004;ATP-dependent RNA helicase activity;0.0187520920167775!GO:0000209;protein polyubiquitination;0.0191856393185451!GO:0006505;GPI anchor metabolic process;0.0193531778624477!GO:0006220;pyrimidine nucleotide metabolic process;0.019367981111056!GO:0016125;sterol metabolic process;0.019401999475384!GO:0006739;NADP metabolic process;0.019401999475384!GO:0000049;tRNA binding;0.0194354959429202!GO:0016301;kinase activity;0.0195995672010646!GO:0003678;DNA helicase activity;0.0196476255373854!GO:0046483;heterocycle metabolic process;0.0197195331511857!GO:0012502;induction of programmed cell death;0.0198439130726779!GO:0044452;nucleolar part;0.0201336125664166!GO:0009966;regulation of signal transduction;0.020458960390439!GO:0030145;manganese ion binding;0.0209571951553912!GO:0003746;translation elongation factor activity;0.0210951462369483!GO:0031543;peptidyl-proline dioxygenase activity;0.0212639123560852!GO:0004177;aminopeptidase activity;0.0213185209730917!GO:0030031;cell projection biogenesis;0.0216915845125675!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0220663007212888!GO:0032508;DNA duplex unwinding;0.0222721700175181!GO:0032392;DNA geometric change;0.0222721700175181!GO:0007088;regulation of mitosis;0.0228188949542114!GO:0004860;protein kinase inhibitor activity;0.0228353465393197!GO:0043492;ATPase activity, coupled to movement of substances;0.0228607392071261!GO:0008139;nuclear localization sequence binding;0.0235017785572484!GO:0031124;mRNA 3'-end processing;0.0235897985310071!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0238249478383757!GO:0016197;endosome transport;0.0238773180839592!GO:0008538;proteasome activator activity;0.0243509848424652!GO:0019798;procollagen-proline dioxygenase activity;0.0243509848424652!GO:0000082;G1/S transition of mitotic cell cycle;0.0245709716006743!GO:0003682;chromatin binding;0.0249536972923754!GO:0005869;dynactin complex;0.0252812456803507!GO:0000075;cell cycle checkpoint;0.0262182454851658!GO:0000792;heterochromatin;0.026350229414844!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.026350229414844!GO:0051539;4 iron, 4 sulfur cluster binding;0.0277640437844249!GO:0030508;thiol-disulfide exchange intermediate activity;0.0277640437844249!GO:0005657;replication fork;0.027949900269567!GO:0006733;oxidoreduction coenzyme metabolic process;0.0280473796938227!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.028305955163643!GO:0006458;'de novo' protein folding;0.0285145738294085!GO:0051084;'de novo' posttranslational protein folding;0.0285145738294085!GO:0033559;unsaturated fatty acid metabolic process;0.0286290772173677!GO:0006636;unsaturated fatty acid biosynthetic process;0.0286290772173677!GO:0051098;regulation of binding;0.0287574508187404!GO:0000096;sulfur amino acid metabolic process;0.0291129205903483!GO:0007021;tubulin folding;0.0296212000939776!GO:0001836;release of cytochrome c from mitochondria;0.0298862973638116!GO:0030127;COPII vesicle coat;0.0298862973638116!GO:0012507;ER to Golgi transport vesicle membrane;0.0298862973638116!GO:0016741;transferase activity, transferring one-carbon groups;0.0308035824758858!GO:0008094;DNA-dependent ATPase activity;0.0309006410678578!GO:0005637;nuclear inner membrane;0.0316095764877946!GO:0048500;signal recognition particle;0.0318598161776838!GO:0006352;transcription initiation;0.0322611891271471!GO:0043433;negative regulation of transcription factor activity;0.0322611891271471!GO:0006405;RNA export from nucleus;0.0324842455270613!GO:0003756;protein disulfide isomerase activity;0.0326534754570394!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0326534754570394!GO:0005832;chaperonin-containing T-complex;0.0329341490315702!GO:0005083;small GTPase regulator activity;0.0332142823702731!GO:0006268;DNA unwinding during replication;0.0333135065105621!GO:0031529;ruffle organization and biogenesis;0.0335893214552995!GO:0006644;phospholipid metabolic process;0.0336183370759407!GO:0005758;mitochondrial intermembrane space;0.0342726435082013!GO:0030433;ER-associated protein catabolic process;0.0343616761563959!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0343616761563959!GO:0009308;amine metabolic process;0.035247910173856!GO:0008168;methyltransferase activity;0.0353585776988064!GO:0035035;histone acetyltransferase binding;0.0354373010507872!GO:0000118;histone deacetylase complex;0.0358355339369429!GO:0006790;sulfur metabolic process;0.0358719280540007!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0365213446445111!GO:0006749;glutathione metabolic process;0.0367597479212535!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0372342156504952!GO:0009112;nucleobase metabolic process;0.0381771701206725!GO:0051128;regulation of cellular component organization and biogenesis;0.0381771701206725!GO:0045936;negative regulation of phosphate metabolic process;0.0393265638250006!GO:0043189;H4/H2A histone acetyltransferase complex;0.0395775113593767!GO:0009303;rRNA transcription;0.0397672318468744!GO:0043414;biopolymer methylation;0.0400137814483233!GO:0046365;monosaccharide catabolic process;0.0414463143961333!GO:0046426;negative regulation of JAK-STAT cascade;0.0422742013299745!GO:0031970;organelle envelope lumen;0.0424737391936802!GO:0016584;nucleosome positioning;0.0429767609645118!GO:0016408;C-acyltransferase activity;0.0436011055885072!GO:0006096;glycolysis;0.0437324335317967!GO:0008652;amino acid biosynthetic process;0.043736116239985!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0438489442450061!GO:0045806;negative regulation of endocytosis;0.0439051305943563!GO:0046870;cadmium ion binding;0.0444354861724748!GO:0043495;protein anchor;0.0450751051473976!GO:0030911;TPR domain binding;0.0450751051473976!GO:0043154;negative regulation of caspase activity;0.0455421335705435!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.045576401378466!GO:0048037;cofactor binding;0.045576401378466!GO:0006338;chromatin remodeling;0.0456084008074246!GO:0046966;thyroid hormone receptor binding;0.0458994515834664!GO:0006769;nicotinamide metabolic process;0.0459771284799636!GO:0008287;protein serine/threonine phosphatase complex;0.0461153508002365!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0469339618999358!GO:0010257;NADH dehydrogenase complex assembly;0.0469339618999358!GO:0033108;mitochondrial respiratory chain complex assembly;0.0469339618999358!GO:0000059;protein import into nucleus, docking;0.0473688365602146!GO:0043022;ribosome binding;0.0473688365602146!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.047781270993773!GO:0000305;response to oxygen radical;0.0480358430456735!GO:0008243;plasminogen activator activity;0.0480637581752073!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0481990158266123!GO:0043086;negative regulation of catalytic activity;0.0485194070153214!GO:0006611;protein export from nucleus;0.0485960871829442!GO:0007242;intracellular signaling cascade;0.0488138633131025!GO:0030032;lamellipodium biogenesis;0.049281185417992!GO:0032906;transforming growth factor-beta2 production;0.0494055116958731!GO:0032909;regulation of transforming growth factor-beta2 production;0.0494055116958731!GO:0030041;actin filament polymerization;0.0498598296257708
 |sample_id=11518
 |sample_note=
@@ Line 76: / Line 105: @@
 |sample_tissue=kidney
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11518-119H6;search_select_hide=table117:FF:11518-119H6
 }}

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FF:11518-119H6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:06, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0