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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002384,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005826
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000066,CL:0000134,CL:0000144,CL:0000181,CL:0000182,CL:0000219,CL:0000220,CL:0000223,CL:0000255,CL:0000412,CL:0000414,CL:0000417,CL:0000548,CL:0000723,CL:0002320,CL:0002321,CL:0002371
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005826
|accession_numbers=CAGE;DRX008307;DRR009179;DRZ000604;DRZ001989;DRZ011954;DRZ013339
|accession_numbers_RNASeq=sRNA-Seq;DRX037266;DRR041632;DRZ007274
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000078
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=CL:0000134,CL:0000223
|fonse_cell_line=
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|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor1.CNhs12340.11523-119I2.hg38.nobarcode.ctss.bed.gz
|id=FF:11523-119I2
|id=FF:11523-119I2
|is_a=EFO:0002091;;FF:0000002;;FF:0000078;;FF:0000210
|is_a=EFO:0002091;;FF:0000078
|is_obsolete=
|library_id=CNhs12340
|library_id_phase_based=2:CNhs12340
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11523
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.AGTCAA.11523
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11523
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.AGTCAA.11523
|name=Hepatocyte, donor1
|name=Hepatocyte, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12340,LSID913,release011,COMPLETED
|profile_hcage=CNhs12340,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_box=119
|rna_catalog_number=SC5205
|rna_catalog_number=SC5205
Line 55: Line 82:
|rna_tube_id=119I2
|rna_tube_id=119I2
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10066.AGTCAA
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.99029188251143e-245!GO:0005737;cytoplasm;4.5996522677584e-206!GO:0044444;cytoplasmic part;5.5231169648728e-190!GO:0043227;membrane-bound organelle;8.89183460101219e-137!GO:0043231;intracellular membrane-bound organelle;8.89183460101219e-137!GO:0043226;organelle;4.45754768449274e-122!GO:0043229;intracellular organelle;8.21730901083244e-122!GO:0005739;mitochondrion;5.14014178519084e-120!GO:0044422;organelle part;5.00165761334687e-107!GO:0044446;intracellular organelle part;1.34827942662927e-105!GO:0044237;cellular metabolic process;1.30677360762189e-79!GO:0031090;organelle membrane;8.46629849126968e-76!GO:0044429;mitochondrial part;4.25574258331448e-74!GO:0044238;primary metabolic process;8.20312154321452e-72!GO:0009058;biosynthetic process;6.1735537955313e-65!GO:0043233;organelle lumen;1.40560611737149e-60!GO:0031974;membrane-enclosed lumen;1.40560611737149e-60!GO:0032991;macromolecular complex;7.28806084561439e-60!GO:0030529;ribonucleoprotein complex;2.90881898722392e-58!GO:0044249;cellular biosynthetic process;2.33234261812153e-55!GO:0031967;organelle envelope;9.62010961298774e-50!GO:0031975;envelope;2.43435775068218e-49!GO:0016491;oxidoreductase activity;7.79881077581297e-48!GO:0005740;mitochondrial envelope;1.6913533802221e-43!GO:0006082;organic acid metabolic process;9.82905170071672e-43!GO:0003723;RNA binding;1.40933760756767e-42!GO:0005783;endoplasmic reticulum;1.40933760756767e-42!GO:0019866;organelle inner membrane;2.74937947609774e-42!GO:0031966;mitochondrial membrane;4.92927937179374e-42!GO:0019752;carboxylic acid metabolic process;9.92916156827207e-42!GO:0005743;mitochondrial inner membrane;7.90094823372118e-41!GO:0019538;protein metabolic process;4.4123129571945e-40!GO:0031980;mitochondrial lumen;1.19460414502945e-39!GO:0005759;mitochondrial matrix;1.19460414502945e-39!GO:0009059;macromolecule biosynthetic process;1.3495459158871e-39!GO:0006412;translation;8.76026526636023e-39!GO:0005840;ribosome;1.08949607897069e-37!GO:0043170;macromolecule metabolic process;2.4444437456589e-37!GO:0033036;macromolecule localization;6.55122210575672e-37!GO:0044260;cellular macromolecule metabolic process;1.72950326947307e-36!GO:0044432;endoplasmic reticulum part;3.03729462985568e-36!GO:0044428;nuclear part;7.94526032081556e-36!GO:0005829;cytosol;1.4121191628521e-35!GO:0015031;protein transport;3.22216708507784e-35!GO:0044267;cellular protein metabolic process;8.58473252643572e-35!GO:0008104;protein localization;2.42896662794685e-34!GO:0045184;establishment of protein localization;3.60022868600571e-34!GO:0044248;cellular catabolic process;9.33396719128227e-34!GO:0006091;generation of precursor metabolites and energy;7.47742147994084e-33!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.52622517789798e-31!GO:0012505;endomembrane system;2.06610197909332e-31!GO:0005789;endoplasmic reticulum membrane;2.54909774949187e-31!GO:0003735;structural constituent of ribosome;4.61531607565249e-31!GO:0005515;protein binding;2.46885007534547e-30!GO:0006396;RNA processing;2.90763603142504e-30!GO:0043234;protein complex;2.84500151650472e-28!GO:0051186;cofactor metabolic process;2.0826112567917e-27!GO:0033279;ribosomal subunit;1.08711036314952e-26!GO:0044255;cellular lipid metabolic process;4.2725226994837e-26!GO:0016071;mRNA metabolic process;8.02343124527287e-26!GO:0006629;lipid metabolic process;1.94939976992325e-25!GO:0006886;intracellular protein transport;3.62551054890596e-25!GO:0009056;catabolic process;1.14680861096887e-23!GO:0032787;monocarboxylic acid metabolic process;1.60033972601587e-23!GO:0008380;RNA splicing;2.12141677929342e-23!GO:0009055;electron carrier activity;2.68607886161907e-23!GO:0046907;intracellular transport;3.21873851912672e-23!GO:0048037;cofactor binding;4.29219201337386e-23!GO:0006119;oxidative phosphorylation;2.74149149327534e-22!GO:0044455;mitochondrial membrane part;4.71063877034628e-22!GO:0006732;coenzyme metabolic process;7.39654965761831e-22!GO:0031981;nuclear lumen;1.02562429038127e-21!GO:0006397;mRNA processing;2.25913125197887e-21!GO:0006118;electron transport;2.93128026718049e-21!GO:0016874;ligase activity;1.65280410976521e-19!GO:0006807;nitrogen compound metabolic process;5.26007738377356e-19!GO:0005746;mitochondrial respiratory chain;6.5739324706611e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.31593808163258e-18!GO:0065003;macromolecular complex assembly;2.15489494919431e-18!GO:0050662;coenzyme binding;4.22356729875747e-17!GO:0005681;spliceosome;7.63338161048613e-17!GO:0016043;cellular component organization and biogenesis;1.27645654038435e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.57376469005892e-16!GO:0009308;amine metabolic process;3.30676451920505e-16!GO:0044265;cellular macromolecule catabolic process;3.75282648127224e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.79055181372738e-16!GO:0003954;NADH dehydrogenase activity;3.79055181372738e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.79055181372738e-16!GO:0006520;amino acid metabolic process;7.39910739777199e-16!GO:0006066;alcohol metabolic process;8.44410505994635e-16!GO:0006519;amino acid and derivative metabolic process;2.3766602393947e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.21499578268708e-15!GO:0022607;cellular component assembly;3.21499578268708e-15!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;5.80500477207368e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.10876830641721e-14!GO:0045271;respiratory chain complex I;1.10876830641721e-14!GO:0005747;mitochondrial respiratory chain complex I;1.10876830641721e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.10959861987829e-14!GO:0042773;ATP synthesis coupled electron transport;1.10959861987829e-14!GO:0005761;mitochondrial ribosome;1.2737452302372e-14!GO:0000313;organellar ribosome;1.2737452302372e-14!GO:0005777;peroxisome;1.42119818328122e-14!GO:0042579;microbody;1.42119818328122e-14!GO:0015935;small ribosomal subunit;3.07102901782968e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.28703929031554e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.37544812367757e-14!GO:0006457;protein folding;4.48144631735999e-14!GO:0005654;nucleoplasm;4.78879922639598e-14!GO:0051641;cellular localization;5.63143228025866e-14!GO:0051649;establishment of cellular localization;5.89026925123716e-14!GO:0022618;protein-RNA complex assembly;9.19716736328605e-14!GO:0016787;hydrolase activity;1.27698290389855e-13!GO:0044445;cytosolic part;2.17076215435633e-13!GO:0015934;large ribosomal subunit;2.18359893812637e-13!GO:0006631;fatty acid metabolic process;2.4629989106678e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.93854178828849e-13!GO:0044262;cellular carbohydrate metabolic process;2.96237624243907e-13!GO:0009057;macromolecule catabolic process;3.88097450144444e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.60294792569554e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;6.520405591923e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;6.65364889345231e-13!GO:0005634;nucleus;6.92618565263369e-13!GO:0016125;sterol metabolic process;8.37735533878774e-13!GO:0000166;nucleotide binding;8.53114265186766e-13!GO:0008135;translation factor activity, nucleic acid binding;9.81148286797316e-13!GO:0008202;steroid metabolic process;9.84012300869588e-13!GO:0016462;pyrophosphatase activity;1.02270809934079e-12!GO:0006605;protein targeting;1.06747168170412e-12!GO:0044451;nucleoplasm part;1.34798091308971e-12!GO:0019941;modification-dependent protein catabolic process;1.35421663285535e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.35421663285535e-12!GO:0044257;cellular protein catabolic process;1.35559449485396e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.6252431259933e-12!GO:0051188;cofactor biosynthetic process;1.90911900939823e-12!GO:0005792;microsome;4.01871100405708e-12!GO:0051082;unfolded protein binding;4.65280257590742e-12!GO:0043285;biopolymer catabolic process;7.79094353849065e-12!GO:0017111;nucleoside-triphosphatase activity;7.92101492810197e-12!GO:0006950;response to stress;9.2212669728795e-12!GO:0005793;ER-Golgi intermediate compartment;1.31504422383833e-11!GO:0042598;vesicular fraction;1.54652764005216e-11!GO:0048770;pigment granule;2.32045579100555e-11!GO:0042470;melanosome;2.32045579100555e-11!GO:0008610;lipid biosynthetic process;2.73747249534065e-11!GO:0002526;acute inflammatory response;2.82063530988019e-11!GO:0006512;ubiquitin cycle;2.87370949459689e-11!GO:0008203;cholesterol metabolic process;3.22373184749806e-11!GO:0044270;nitrogen compound catabolic process;3.63319636088911e-11!GO:0009063;amino acid catabolic process;3.86487136219112e-11!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;3.88944466000424e-11!GO:0005794;Golgi apparatus;8.81664499551605e-11!GO:0046483;heterocycle metabolic process;9.92394596430493e-11!GO:0015980;energy derivation by oxidation of organic compounds;2.01670075780113e-10!GO:0009310;amine catabolic process;2.55138018629082e-10!GO:0048193;Golgi vesicle transport;4.53567750617343e-10!GO:0006446;regulation of translational initiation;5.22507530757921e-10!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;5.95825465351091e-10!GO:0016887;ATPase activity;8.73813456416442e-10!GO:0008134;transcription factor binding;9.68036159407072e-10!GO:0009060;aerobic respiration;1.19150624631005e-09!GO:0006413;translational initiation;1.32021837349396e-09!GO:0009108;coenzyme biosynthetic process;1.50138032988391e-09!GO:0045333;cellular respiration;1.95734426824437e-09!GO:0010467;gene expression;2.54729158135121e-09!GO:0016126;sterol biosynthetic process;2.91357034693449e-09!GO:0051187;cofactor catabolic process;3.23338088069193e-09!GO:0016192;vesicle-mediated transport;3.23338088069193e-09!GO:0030163;protein catabolic process;3.70807449168455e-09!GO:0016829;lyase activity;4.14216410023929e-09!GO:0006461;protein complex assembly;5.49271387093404e-09!GO:0005975;carbohydrate metabolic process;8.40649983909635e-09!GO:0003743;translation initiation factor activity;8.66556535324657e-09!GO:0006695;cholesterol biosynthetic process;9.35133082825015e-09!GO:0016740;transferase activity;1.09067867494319e-08!GO:0006084;acetyl-CoA metabolic process;1.12946575429023e-08!GO:0017076;purine nucleotide binding;1.29182979316217e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.56848483444253e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.56848483444253e-08!GO:0005730;nucleolus;1.69045526965883e-08!GO:0008219;cell death;2.05016013200386e-08!GO:0016265;death;2.05016013200386e-08!GO:0006958;complement activation, classical pathway;2.18528532556881e-08!GO:0006913;nucleocytoplasmic transport;2.25119619117454e-08!GO:0002455;humoral immune response mediated by circulating immunoglobulin;2.34440683918008e-08!GO:0016607;nuclear speck;2.55926250561363e-08!GO:0005773;vacuole;2.77974262574859e-08!GO:0006099;tricarboxylic acid cycle;3.09239026370251e-08!GO:0046356;acetyl-CoA catabolic process;3.09239026370251e-08!GO:0016604;nuclear body;3.10813077513887e-08!GO:0006915;apoptosis;3.22096275454025e-08!GO:0012501;programmed cell death;3.31205608897007e-08!GO:0002541;activation of plasma proteins during acute inflammatory response;3.67542477843471e-08!GO:0006956;complement activation;3.67542477843471e-08!GO:0051169;nuclear transport;3.92532207504662e-08!GO:0009109;coenzyme catabolic process;3.95996838043548e-08!GO:0005768;endosome;4.06376188424781e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.24446852682285e-08!GO:0000375;RNA splicing, via transesterification reactions;4.24446852682285e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.24446852682285e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.40302081581699e-08!GO:0009259;ribonucleotide metabolic process;4.7764394140821e-08!GO:0042623;ATPase activity, coupled;4.77658563949869e-08!GO:0030554;adenyl nucleotide binding;5.64662308728803e-08!GO:0005506;iron ion binding;5.88859320602815e-08!GO:0046930;pore complex;7.18100365554716e-08!GO:0005635;nuclear envelope;8.45215890754962e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.29715809253125e-08!GO:0019439;aromatic compound catabolic process;9.51339914363234e-08!GO:0019829;cation-transporting ATPase activity;1.30446470662965e-07!GO:0006163;purine nucleotide metabolic process;1.32214410945211e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.3892903817922e-07!GO:0043283;biopolymer metabolic process;1.48472487753044e-07!GO:0000323;lytic vacuole;1.55578564751989e-07!GO:0005764;lysosome;1.55578564751989e-07!GO:0008565;protein transporter activity;1.81146242899244e-07!GO:0031965;nuclear membrane;1.81146242899244e-07!GO:0019842;vitamin binding;1.89418676691246e-07!GO:0017038;protein import;2.34518109147462e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.37503116377791e-07!GO:0006752;group transfer coenzyme metabolic process;2.75236991291611e-07!GO:0005996;monosaccharide metabolic process;4.07019726777647e-07!GO:0030120;vesicle coat;4.26963528353823e-07!GO:0030662;coated vesicle membrane;4.26963528353823e-07!GO:0015986;ATP synthesis coupled proton transport;4.28473386321455e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.28473386321455e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.79326330736109e-07!GO:0008652;amino acid biosynthetic process;5.06919894875852e-07!GO:0009260;ribonucleotide biosynthetic process;5.2061860159183e-07!GO:0006164;purine nucleotide biosynthetic process;5.80127390329286e-07!GO:0006996;organelle organization and biogenesis;5.83030645131331e-07!GO:0044453;nuclear membrane part;6.374698217733e-07!GO:0009199;ribonucleoside triphosphate metabolic process;6.80816974755231e-07!GO:0009150;purine ribonucleotide metabolic process;1.05360935984779e-06!GO:0000096;sulfur amino acid metabolic process;1.05617328922947e-06!GO:0019318;hexose metabolic process;1.14928733696998e-06!GO:0006399;tRNA metabolic process;1.16773772560453e-06!GO:0065002;intracellular protein transport across a membrane;1.25126572439511e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.27829688531278e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.27829688531278e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.3162800661331e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.3162800661331e-06!GO:0009141;nucleoside triphosphate metabolic process;1.56172245325283e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.9036001273173e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.9036001273173e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.9036001273173e-06!GO:0046034;ATP metabolic process;1.97933841534652e-06!GO:0008639;small protein conjugating enzyme activity;2.00740248380465e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.24129644455583e-06!GO:0006790;sulfur metabolic process;2.24757130730612e-06!GO:0045259;proton-transporting ATP synthase complex;2.36069680355388e-06!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;2.361602609657e-06!GO:0006006;glucose metabolic process;2.49511236025493e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.50347385615007e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.50347385615007e-06!GO:0050660;FAD binding;2.74928444067743e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.78291768752508e-06!GO:0004842;ubiquitin-protein ligase activity;2.88237388101348e-06!GO:0006754;ATP biosynthetic process;2.91577690565435e-06!GO:0006753;nucleoside phosphate metabolic process;2.91577690565435e-06!GO:0043412;biopolymer modification;2.95720563858295e-06!GO:0032553;ribonucleotide binding;3.41853861644468e-06!GO:0032555;purine ribonucleotide binding;3.41853861644468e-06!GO:0043038;amino acid activation;3.41853861644468e-06!GO:0006418;tRNA aminoacylation for protein translation;3.41853861644468e-06!GO:0043039;tRNA aminoacylation;3.41853861644468e-06!GO:0006869;lipid transport;3.74220188027402e-06!GO:0009152;purine ribonucleotide biosynthetic process;4.46752064497265e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.91578120562639e-06!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;6.47411981202735e-06!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.47411981202735e-06!GO:0042254;ribosome biogenesis and assembly;6.48250287439601e-06!GO:0030170;pyridoxal phosphate binding;7.02188772363538e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.54750491317695e-06!GO:0015399;primary active transmembrane transporter activity;7.54750491317695e-06!GO:0005319;lipid transporter activity;7.54750491317695e-06!GO:0019787;small conjugating protein ligase activity;7.98674247286046e-06!GO:0006694;steroid biosynthetic process;8.49887448996287e-06!GO:0003712;transcription cofactor activity;8.80707366634891e-06!GO:0009069;serine family amino acid metabolic process;8.94522495594187e-06!GO:0016853;isomerase activity;9.40468090767541e-06!GO:0006259;DNA metabolic process;1.03990256891475e-05!GO:0004298;threonine endopeptidase activity;1.12749752719509e-05!GO:0005643;nuclear pore;1.16807714676813e-05!GO:0019395;fatty acid oxidation;1.17660651882809e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.24832178286187e-05!GO:0042157;lipoprotein metabolic process;1.27528396212552e-05!GO:0005762;mitochondrial large ribosomal subunit;1.27933070466058e-05!GO:0000315;organellar large ribosomal subunit;1.27933070466058e-05!GO:0009074;aromatic amino acid family catabolic process;1.30319505006095e-05!GO:0008483;transaminase activity;1.3209884823824e-05!GO:0048475;coated membrane;1.34230558576739e-05!GO:0030117;membrane coat;1.34230558576739e-05!GO:0005524;ATP binding;1.34531422368895e-05!GO:0009719;response to endogenous stimulus;1.37627498936083e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.4105091503939e-05!GO:0032559;adenyl ribonucleotide binding;1.49166893914735e-05!GO:0006725;aromatic compound metabolic process;1.54331782826247e-05!GO:0043069;negative regulation of programmed cell death;1.59376128535276e-05!GO:0006613;cotranslational protein targeting to membrane;1.66385753663198e-05!GO:0016769;transferase activity, transferring nitrogenous groups;1.81763673390345e-05!GO:0051287;NAD binding;1.83562761654446e-05!GO:0043066;negative regulation of apoptosis;1.93226725058463e-05!GO:0005788;endoplasmic reticulum lumen;2.17872607652938e-05!GO:0008654;phospholipid biosynthetic process;2.30448971466103e-05!GO:0000314;organellar small ribosomal subunit;2.54861161076866e-05!GO:0005763;mitochondrial small ribosomal subunit;2.54861161076866e-05!GO:0009117;nucleotide metabolic process;2.82754854314088e-05!GO:0006635;fatty acid beta-oxidation;2.82932257510315e-05!GO:0006979;response to oxidative stress;3.03168540818534e-05!GO:0032446;protein modification by small protein conjugation;3.08459371083469e-05!GO:0050657;nucleic acid transport;3.18945595291573e-05!GO:0051236;establishment of RNA localization;3.18945595291573e-05!GO:0050658;RNA transport;3.18945595291573e-05!GO:0051540;metal cluster binding;3.23886103859517e-05!GO:0051536;iron-sulfur cluster binding;3.23886103859517e-05!GO:0006464;protein modification process;3.43562738622822e-05!GO:0016881;acid-amino acid ligase activity;3.56213515856272e-05!GO:0006403;RNA localization;3.90803934414616e-05!GO:0019867;outer membrane;4.04822128650588e-05!GO:0016741;transferase activity, transferring one-carbon groups;4.32684097969874e-05!GO:0045454;cell redox homeostasis;4.32901430867168e-05!GO:0042981;regulation of apoptosis;4.44676257667308e-05!GO:0006612;protein targeting to membrane;4.45820876340435e-05!GO:0044438;microbody part;4.49373534019531e-05!GO:0044439;peroxisomal part;4.49373534019531e-05!GO:0022890;inorganic cation transmembrane transporter activity;5.08381236977848e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.21012609865095e-05!GO:0007005;mitochondrion organization and biogenesis;5.22001038955344e-05!GO:0031968;organelle outer membrane;5.22736078227388e-05!GO:0051246;regulation of protein metabolic process;5.25263973459539e-05!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;5.51633009726334e-05!GO:0051789;response to protein stimulus;5.51633009726334e-05!GO:0006986;response to unfolded protein;5.51633009726334e-05!GO:0043067;regulation of programmed cell death;5.95638626789251e-05!GO:0043492;ATPase activity, coupled to movement of substances;5.98840658074677e-05!GO:0046364;monosaccharide biosynthetic process;6.58927664855383e-05!GO:0046165;alcohol biosynthetic process;6.58927664855383e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;6.63533063799534e-05!GO:0016567;protein ubiquitination;6.7283737302165e-05!GO:0004386;helicase activity;7.04245582817627e-05!GO:0005770;late endosome;7.36300778400153e-05!GO:0006558;L-phenylalanine metabolic process;7.44228476267122e-05!GO:0006559;L-phenylalanine catabolic process;7.44228476267122e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.03211103946939e-05!GO:0000097;sulfur amino acid biosynthetic process;8.08811539179764e-05!GO:0016746;transferase activity, transferring acyl groups;8.13409980096628e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;8.38200964508123e-05!GO:0000151;ubiquitin ligase complex;8.45779586641671e-05!GO:0009064;glutamine family amino acid metabolic process;8.48320405007149e-05!GO:0016830;carbon-carbon lyase activity;8.48320405007149e-05!GO:0003995;acyl-CoA dehydrogenase activity;9.49028021095058e-05!GO:0008026;ATP-dependent helicase activity;9.68294276709077e-05!GO:0046870;cadmium ion binding;9.81598348832034e-05!GO:0043566;structure-specific DNA binding;0.000105486201159216!GO:0031903;microbody membrane;0.000111832454924338!GO:0005778;peroxisomal membrane;0.000111832454924338!GO:0043284;biopolymer biosynthetic process;0.000115433718359736!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.000120744905053725!GO:0044431;Golgi apparatus part;0.000126309050854891!GO:0051539;4 iron, 4 sulfur cluster binding;0.000130679621831067!GO:0044440;endosomal part;0.000135331327983483!GO:0010008;endosome membrane;0.000135331327983483!GO:0005741;mitochondrial outer membrane;0.000140146707571717!GO:0044272;sulfur compound biosynthetic process;0.000149178022290818!GO:0030532;small nuclear ribonucleoprotein complex;0.000149178022290818!GO:0019319;hexose biosynthetic process;0.00015645879331936!GO:0043228;non-membrane-bound organelle;0.000160363185109508!GO:0043232;intracellular non-membrane-bound organelle;0.000160363185109508!GO:0030867;rough endoplasmic reticulum membrane;0.000174465917206864!GO:0006364;rRNA processing;0.00020396329457452!GO:0006778;porphyrin metabolic process;0.000212957638837797!GO:0033013;tetrapyrrole metabolic process;0.000212957638837797!GO:0008415;acyltransferase activity;0.00021356344771685!GO:0051028;mRNA transport;0.000216106147104109!GO:0005791;rough endoplasmic reticulum;0.000219507341161142!GO:0051384;response to glucocorticoid stimulus;0.000239817302141336!GO:0008168;methyltransferase activity;0.000246468297917179!GO:0051170;nuclear import;0.000279882171591609!GO:0042802;identical protein binding;0.000285176408182306!GO:0043021;ribonucleoprotein binding;0.000285946891148023!GO:0006953;acute-phase response;0.000290344917622242!GO:0006090;pyruvate metabolic process;0.000297660916772518!GO:0005798;Golgi-associated vesicle;0.000300285464397767!GO:0006525;arginine metabolic process;0.000301963933690375!GO:0016072;rRNA metabolic process;0.000308306775507203!GO:0006974;response to DNA damage stimulus;0.000356054019434451!GO:0006767;water-soluble vitamin metabolic process;0.000375127357124043!GO:0006606;protein import into nucleus;0.000379386922772299!GO:0031960;response to corticosteroid stimulus;0.000417211851056971!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000428025478995743!GO:0000245;spliceosome assembly;0.000431532615532785!GO:0009066;aspartate family amino acid metabolic process;0.000431532615532785!GO:0006094;gluconeogenesis;0.00047243796104133!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000490802214103089!GO:0046394;carboxylic acid biosynthetic process;0.000540677299347456!GO:0016053;organic acid biosynthetic process;0.000540677299347456!GO:0031988;membrane-bound vesicle;0.000540677299347456!GO:0016064;immunoglobulin mediated immune response;0.000548505687142977!GO:0008286;insulin receptor signaling pathway;0.000599268448429903!GO:0016779;nucleotidyltransferase activity;0.000607509626461136!GO:0006957;complement activation, alternative pathway;0.000622228334544996!GO:0006508;proteolysis;0.000647931749610676!GO:0002253;activation of immune response;0.000650916842432596!GO:0009112;nucleobase metabolic process;0.000656893572378!GO:0016645;oxidoreductase activity, acting on the CH-NH group of donors;0.000671948895525446!GO:0006749;glutathione metabolic process;0.000683908818159578!GO:0043687;post-translational protein modification;0.000686899250621816!GO:0006518;peptide metabolic process;0.000746742775217681!GO:0016051;carbohydrate biosynthetic process;0.000750104764832364!GO:0016023;cytoplasmic membrane-bound vesicle;0.000807688471067576!GO:0051920;peroxiredoxin activity;0.000829842754470397!GO:0015923;mannosidase activity;0.000846065604669902!GO:0019899;enzyme binding;0.000847682351399223!GO:0006916;anti-apoptosis;0.000869808193063227!GO:0051537;2 iron, 2 sulfur cluster binding;0.000880505345430411!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000880872417523499!GO:0009165;nucleotide biosynthetic process;0.000975126073816567!GO:0000139;Golgi membrane;0.00103379124359252!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00103379124359252!GO:0015002;heme-copper terminal oxidase activity;0.00103379124359252!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00103379124359252!GO:0004129;cytochrome-c oxidase activity;0.00103379124359252!GO:0043681;protein import into mitochondrion;0.00105133140493673!GO:0031982;vesicle;0.00113529195134714!GO:0009081;branched chain family amino acid metabolic process;0.00116221581658965!GO:0042168;heme metabolic process;0.00121067341010206!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00121067341010206!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00121067341010206!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00121067341010206!GO:0009309;amine biosynthetic process;0.00122727532025434!GO:0031324;negative regulation of cellular metabolic process;0.0012304238980821!GO:0016885;ligase activity, forming carbon-carbon bonds;0.00123518798891298!GO:0048471;perinuclear region of cytoplasm;0.00126103391251103!GO:0003724;RNA helicase activity;0.00128111114863556!GO:0019438;aromatic compound biosynthetic process;0.00138591160534656!GO:0019724;B cell mediated immunity;0.00147790815033757!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0015196521412982!GO:0051716;cellular response to stimulus;0.00153252563381915!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.00157109792613875!GO:0006766;vitamin metabolic process;0.00161889196947175!GO:0031410;cytoplasmic vesicle;0.0016212944676746!GO:0030134;ER to Golgi transport vesicle;0.00171301255537846!GO:0016044;membrane organization and biogenesis;0.00174639889502079!GO:0003697;single-stranded DNA binding;0.00177798660913887!GO:0051659;maintenance of mitochondrion localization;0.00180400837209159!GO:0051657;maintenance of organelle localization;0.00180400837209159!GO:0006414;translational elongation;0.00183454178310183!GO:0051168;nuclear export;0.00185289622291811!GO:0003690;double-stranded DNA binding;0.00185289622291811!GO:0030658;transport vesicle membrane;0.00193377474312822!GO:0004300;enoyl-CoA hydratase activity;0.00197776906307162!GO:0030176;integral to endoplasmic reticulum membrane;0.00197776906307162!GO:0016564;transcription repressor activity;0.00198254006569615!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00198912707509711!GO:0006366;transcription from RNA polymerase II promoter;0.00205761844792616!GO:0005579;membrane attack complex;0.00206969570327418!GO:0006650;glycerophospholipid metabolic process;0.00208187037456269!GO:0016811;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;0.00209395745113824!GO:0031970;organelle envelope lumen;0.00216175934733053!GO:0016705;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;0.0021883468761357!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.00222994492847062!GO:0000050;urea cycle;0.00230428518369291!GO:0043603;amide metabolic process;0.00230428518369291!GO:0019627;urea metabolic process;0.00230428518369291!GO:0003714;transcription corepressor activity;0.00230428518369291!GO:0001889;liver development;0.00233222638459165!GO:0006081;aldehyde metabolic process;0.00233222638459165!GO:0006779;porphyrin biosynthetic process;0.00234461349792084!GO:0033014;tetrapyrrole biosynthetic process;0.00234461349792084!GO:0016568;chromatin modification;0.00238511706171008!GO:0033116;ER-Golgi intermediate compartment membrane;0.00247917008298735!GO:0016835;carbon-oxygen lyase activity;0.0025166305979326!GO:0009083;branched chain family amino acid catabolic process;0.00260121694480497!GO:0046474;glycerophospholipid biosynthetic process;0.00262412689595929!GO:0030127;COPII vesicle coat;0.00263710280264792!GO:0012507;ER to Golgi transport vesicle membrane;0.00263710280264792!GO:0003713;transcription coactivator activity;0.00264291613274504!GO:0008206;bile acid metabolic process;0.00268780687380362!GO:0015918;sterol transport;0.00281640884274089!GO:0030301;cholesterol transport;0.00281640884274089!GO:0006487;protein amino acid N-linked glycosylation;0.00282401206854481!GO:0016877;ligase activity, forming carbon-sulfur bonds;0.00284367297053183!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00286976961780513!GO:0046983;protein dimerization activity;0.00289848000735271!GO:0006818;hydrogen transport;0.00289848000735271!GO:0048500;signal recognition particle;0.00289862691513779!GO:0016810;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds;0.00295938559578492!GO:0006720;isoprenoid metabolic process;0.00304562508360391!GO:0030133;transport vesicle;0.00312052253970249!GO:0005758;mitochondrial intermembrane space;0.00314412856488057!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00327940728682015!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00327940728682015!GO:0015036;disulfide oxidoreductase activity;0.00337235611850505!GO:0004364;glutathione transferase activity;0.00343665377325223!GO:0006281;DNA repair;0.00346970665526548!GO:0016831;carboxy-lyase activity;0.00348725552520787!GO:0006879;cellular iron ion homeostasis;0.00348725552520787!GO:0055072;iron ion homeostasis;0.00348725552520787!GO:0031326;regulation of cellular biosynthetic process;0.00351612635964322!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00354639707956469!GO:0004576;oligosaccharyl transferase activity;0.00362413478696334!GO:0010033;response to organic substance;0.00368012635275342!GO:0030139;endocytic vesicle;0.00374461111223132!GO:0016836;hydro-lyase activity;0.00375822259551417!GO:0044242;cellular lipid catabolic process;0.00375849686210605!GO:0008299;isoprenoid biosynthetic process;0.00398264200882663!GO:0015992;proton transport;0.00414665700406638!GO:0043623;cellular protein complex assembly;0.00419831318861586!GO:0016421;CoA carboxylase activity;0.00422029362106213!GO:0007040;lysosome organization and biogenesis;0.00424520226054356!GO:0009889;regulation of biosynthetic process;0.00430510597961398!GO:0046146;tetrahydrobiopterin metabolic process;0.00430510597961398!GO:0006402;mRNA catabolic process;0.00436079422536655!GO:0042559;pteridine and derivative biosynthetic process;0.00437769641222752!GO:0006572;tyrosine catabolic process;0.00444250732154732!GO:0016407;acetyltransferase activity;0.00470655955151922!GO:0006644;phospholipid metabolic process;0.00481413740991024!GO:0030660;Golgi-associated vesicle membrane;0.00487540725707775!GO:0045947;negative regulation of translational initiation;0.0050727947272203!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00519628094843534!GO:0044271;nitrogen compound biosynthetic process;0.00521287900417158!GO:0042558;pteridine and derivative metabolic process;0.00523421880040576!GO:0046395;carboxylic acid catabolic process;0.00528058422044904!GO:0016054;organic acid catabolic process;0.00528058422044904!GO:0006555;methionine metabolic process;0.00529358540953518!GO:0009892;negative regulation of metabolic process;0.00539856057816811!GO:0042627;chylomicron;0.00539856057816811!GO:0006733;oxidoreduction coenzyme metabolic process;0.00544852245286679!GO:0004177;aminopeptidase activity;0.00544852245286679!GO:0019216;regulation of lipid metabolic process;0.00556073691755137!GO:0015924;mannosyl-oligosaccharide mannosidase activity;0.00560779170184245!GO:0033554;cellular response to stress;0.00568307860436509!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.00582950169518645!GO:0030569;chymotrypsin inhibitor activity;0.00601927117764222!GO:0006417;regulation of translation;0.00624598231932312!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00638800349114035!GO:0030132;clathrin coat of coated pit;0.00640941732720844!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0064554361575516!GO:0045047;protein targeting to ER;0.0064554361575516!GO:0016798;hydrolase activity, acting on glycosyl bonds;0.0064554361575516!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00654402778089007!GO:0051427;hormone receptor binding;0.00655528079992632!GO:0008250;oligosaccharyl transferase complex;0.00665498633334584!GO:0003746;translation elongation factor activity;0.00673074846833051!GO:0006527;arginine catabolic process;0.00702121291279043!GO:0016408;C-acyltransferase activity;0.00703525539465589!GO:0006563;L-serine metabolic process;0.0070727724558415!GO:0031072;heat shock protein binding;0.00712883736684054!GO:0006626;protein targeting to mitochondrion;0.00722837093599954!GO:0005885;Arp2/3 protein complex;0.00743170266829833!GO:0004553;hydrolase activity, hydrolyzing O-glycosyl compounds;0.0076013697237036!GO:0048523;negative regulation of cellular process;0.00762977141588116!GO:0009225;nucleotide-sugar metabolic process;0.00763061839933573!GO:0009070;serine family amino acid biosynthetic process;0.00797530439657964!GO:0030663;COPI coated vesicle membrane;0.00814781834909129!GO:0030126;COPI vesicle coat;0.00814781834909129!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00820774675512789!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00840038440035256!GO:0005905;coated pit;0.00869649962160678!GO:0005048;signal sequence binding;0.0087287182612265!GO:0008430;selenium binding;0.00884942435411178!GO:0046467;membrane lipid biosynthetic process;0.00886360277753548!GO:0046489;phosphoinositide biosynthetic process;0.0088875964056692!GO:0016859;cis-trans isomerase activity;0.0090909369245017!GO:0003729;mRNA binding;0.00938796699220051!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00941104573941892!GO:0016878;acid-thiol ligase activity;0.00954283494122634!GO:0016197;endosome transport;0.00975131108819764!GO:0042158;lipoprotein biosynthetic process;0.00987273403297575!GO:0030433;ER-associated protein catabolic process;0.00990695934178654!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00990695934178654!GO:0003899;DNA-directed RNA polymerase activity;0.00999139660002466!GO:0008186;RNA-dependent ATPase activity;0.0100192402279819!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0101654251754774!GO:0000062;acyl-CoA binding;0.0103189702135544!GO:0005769;early endosome;0.0103380550844974!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0106406575879049!GO:0008312;7S RNA binding;0.010648664084405!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0108238002259948!GO:0009374;biotin binding;0.0111438562960272!GO:0045786;negative regulation of progression through cell cycle;0.0113923710432212!GO:0007031;peroxisome organization and biogenesis;0.0113923710432212!GO:0006534;cysteine metabolic process;0.0113923710432212!GO:0035257;nuclear hormone receptor binding;0.0114393624145355!GO:0031668;cellular response to extracellular stimulus;0.0114393624145355!GO:0031252;leading edge;0.0116892567649583!GO:0006354;RNA elongation;0.0123841840169212!GO:0018196;peptidyl-asparagine modification;0.0124498649063582!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0124498649063582!GO:0006595;polyamine metabolic process;0.0125505560088419!GO:0006783;heme biosynthetic process;0.0125638183743923!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0126630597264207!GO:0003756;protein disulfide isomerase activity;0.0127220884500225!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0127220884500225!GO:0030880;RNA polymerase complex;0.0129545366807994!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0129812767552823!GO:0006206;pyrimidine base metabolic process;0.0133416665434135!GO:0006401;RNA catabolic process;0.0139672024619496!GO:0007033;vacuole organization and biogenesis;0.0139806761564868!GO:0016410;N-acyltransferase activity;0.014010800017652!GO:0010035;response to inorganic substance;0.0141815303372558!GO:0007006;mitochondrial membrane organization and biogenesis;0.0150864989530387!GO:0006658;phosphatidylserine metabolic process;0.01526405124961!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.01526405124961!GO:0008374;O-acyltransferase activity;0.015377116627427!GO:0016840;carbon-nitrogen lyase activity;0.015377116627427!GO:0006643;membrane lipid metabolic process;0.015377116627427!GO:0009067;aspartate family amino acid biosynthetic process;0.0154158325753344!GO:0009991;response to extracellular stimulus;0.0156352377917428!GO:0048519;negative regulation of biological process;0.0157220683512076!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0159389046628961!GO:0006729;tetrahydrobiopterin biosynthetic process;0.0161762683398682!GO:0000049;tRNA binding;0.0163261816263352!GO:0031406;carboxylic acid binding;0.016513310595918!GO:0019843;rRNA binding;0.0165811637190518!GO:0008172;S-methyltransferase activity;0.0167500864035585!GO:0016709;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;0.0168278412633929!GO:0006706;steroid catabolic process;0.0168637115857769!GO:0044275;cellular carbohydrate catabolic process;0.0170084825091038!GO:0042594;response to starvation;0.0170810354808069!GO:0042364;water-soluble vitamin biosynthetic process;0.0171922166739588!GO:0005977;glycogen metabolic process;0.0172386408141084!GO:0030145;manganese ion binding;0.0176445886317719!GO:0046904;calcium oxalate binding;0.0180135541860322!GO:0030568;plasmin inhibitor activity;0.0180135541860322!GO:0005667;transcription factor complex;0.0180703465353087!GO:0000287;magnesium ion binding;0.0181998744079316!GO:0045239;tricarboxylic acid cycle enzyme complex;0.0183263800669804!GO:0015682;ferric iron transport;0.0191194851922506!GO:0015091;ferric iron transmembrane transporter activity;0.0191194851922506!GO:0031643;positive regulation of myelination;0.0191194851922506!GO:0051252;regulation of RNA metabolic process;0.0194147945668446!GO:0004571;mannosyl-oligosaccharide 1,2-alpha-mannosidase activity;0.0194334242425769!GO:0043488;regulation of mRNA stability;0.0196133439722627!GO:0043487;regulation of RNA stability;0.0196133439722627!GO:0004448;isocitrate dehydrogenase activity;0.0196637156599084!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0199057995419762!GO:0015886;heme transport;0.0201425970754399!GO:0050327;testosterone 17-beta-dehydrogenase activity;0.0205352125297837!GO:0006007;glucose catabolic process;0.021060815053364!GO:0006544;glycine metabolic process;0.0210923480681467!GO:0016563;transcription activator activity;0.0212486414684217!GO:0050749;apolipoprotein E receptor binding;0.0212486414684217!GO:0048487;beta-tubulin binding;0.021661837764783!GO:0030125;clathrin vesicle coat;0.0217955494812908!GO:0030665;clathrin coated vesicle membrane;0.0217955494812908!GO:0007034;vacuolar transport;0.0221415222203129!GO:0005577;fibrinogen complex;0.0222496102343745!GO:0043094;metabolic compound salvage;0.0224704430542101!GO:0004004;ATP-dependent RNA helicase activity;0.0227459462971768!GO:0005774;vacuolar membrane;0.0230576502879811!GO:0031625;ubiquitin protein ligase binding;0.0230636607056768!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0232839349760425!GO:0003924;GTPase activity;0.0235962537855025!GO:0007596;blood coagulation;0.0237056044103974!GO:0015205;nucleobase transmembrane transporter activity;0.0238565793328108!GO:0050748;negative regulation of lipoprotein metabolic process;0.0245475287505048!GO:0006891;intra-Golgi vesicle-mediated transport;0.024558309887526!GO:0006611;protein export from nucleus;0.0250085005348878!GO:0007599;hemostasis;0.0250700359553695!GO:0030118;clathrin coat;0.0251108091283268!GO:0030151;molybdenum ion binding;0.0254647229730751!GO:0002449;lymphocyte mediated immunity;0.0258483587682271!GO:0006839;mitochondrial transport;0.0264343483222683!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0269895812384424!GO:0000428;DNA-directed RNA polymerase complex;0.0269895812384424!GO:0015035;protein disulfide oxidoreductase activity;0.0275653747388386!GO:0006793;phosphorus metabolic process;0.0281787115727622!GO:0006796;phosphate metabolic process;0.0281787115727622!GO:0030137;COPI-coated vesicle;0.0286308044186483!GO:0008320;protein transmembrane transporter activity;0.0288133675736866!GO:0009086;methionine biosynthetic process;0.0288307986288451!GO:0005525;GTP binding;0.0288307986288451!GO:0030659;cytoplasmic vesicle membrane;0.0299516069329434!GO:0006633;fatty acid biosynthetic process;0.0299952003015306!GO:0051087;chaperone binding;0.0299952003015306!GO:0006984;ER-nuclear signaling pathway;0.0302164677209364!GO:0030503;regulation of cell redox homeostasis;0.0307641381698034!GO:0030518;steroid hormone receptor signaling pathway;0.0308304258207297!GO:0016624;oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor;0.0313834226703366!GO:0006959;humoral immune response;0.0314645158698!GO:0006323;DNA packaging;0.0315819708684053!GO:0046487;glyoxylate metabolic process;0.0318386124280265!GO:0051101;regulation of DNA binding;0.032004316790536!GO:0050811;GABA receptor binding;0.0325632427809038!GO:0005159;insulin-like growth factor receptor binding;0.0336709720515537!GO:0004372;glycine hydroxymethyltransferase activity;0.0337489254117846!GO:0006022;aminoglycan metabolic process;0.0337489254117846!GO:0050817;coagulation;0.0342393141280533!GO:0006073;glucan metabolic process;0.0342410822276425!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0355660748020976!GO:0007243;protein kinase cascade;0.036626230700108!GO:0042221;response to chemical stimulus;0.0366274143847963!GO:0006497;protein amino acid lipidation;0.0366274143847963!GO:0017166;vinculin binding;0.0367772336728741!GO:0009116;nucleoside metabolic process;0.0370952005528689!GO:0001666;response to hypoxia;0.03747361468647!GO:0030235;nitric-oxide synthase regulator activity;0.0375184757147257!GO:0005684;U2-dependent spliceosome;0.037626079086373!GO:0006642;triacylglycerol mobilization;0.0376372584669053!GO:0006526;arginine biosynthetic process;0.0382810522796675!GO:0002018;renin-angiotensin regulation of aldosterone production;0.0391409856105437!GO:0048143;astrocyte activation;0.0391409856105437!GO:0046622;positive regulation of organ growth;0.0391409856105437!GO:0031701;angiotensin receptor binding;0.0391409856105437!GO:0031703;type 2 angiotensin receptor binding;0.0391409856105437!GO:0045723;positive regulation of fatty acid biosynthetic process;0.0391409856105437!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.0391409856105437!GO:0042756;drinking behavior;0.0391409856105437!GO:0002019;angiotensin mediated regulation of renal output;0.0391409856105437!GO:0031702;type 1 angiotensin receptor binding;0.0391409856105437!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.0391409856105437!GO:0031327;negative regulation of cellular biosynthetic process;0.0391409856105437!GO:0016712;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen;0.0391523082662742!GO:0045540;regulation of cholesterol biosynthetic process;0.0395097246856815!GO:0000041;transition metal ion transport;0.0395097246856815!GO:0016646;oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor;0.0395660419348036!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0398424944130094!GO:0043022;ribosome binding;0.0399175664981254!GO:0031669;cellular response to nutrient levels;0.0399402405837833!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0400269287383429!GO:0051726;regulation of cell cycle;0.0400887959728964!GO:0008139;nuclear localization sequence binding;0.0406583334895404!GO:0044264;cellular polysaccharide metabolic process;0.0408037499404432!GO:0008033;tRNA processing;0.0408037499404432!GO:0030508;thiol-disulfide exchange intermediate activity;0.0408157816999963!GO:0001887;selenium metabolic process;0.0417836840365415!GO:0044437;vacuolar part;0.0424857303283139!GO:0005784;translocon complex;0.0426400686052822!GO:0031647;regulation of protein stability;0.0434243965431232!GO:0006013;mannose metabolic process;0.0434243965431232!GO:0019321;pentose metabolic process;0.0438388230818478!GO:0000074;regulation of progression through cell cycle;0.0455553652221994!GO:0003711;transcription elongation regulator activity;0.0457312585262175!GO:0003812;alternative-complement-pathway C3/C5 convertase activity;0.046694709609892!GO:0046112;nucleobase biosynthetic process;0.0474024222731824!GO:0032287;myelin maintenance in the peripheral nervous system;0.0474024222731824!GO:0032838;cell projection cytoplasm;0.0474024222731824!GO:0033081;regulation of T cell differentiation in the thymus;0.0474024222731824!GO:0043217;myelin maintenance;0.0474024222731824!GO:0060087;relaxation of vascular smooth muscle;0.0474024222731824!GO:0032839;dendrite cytoplasm;0.0474024222731824!GO:0009267;cellular response to starvation;0.0474467956612049!GO:0031667;response to nutrient levels;0.0475382751745498!GO:0008383;manganese superoxide dismutase activity;0.0481831082248764!GO:0001315;age-dependent response to reactive oxygen species;0.0481831082248764!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0491202140886656!GO:0010257;NADH dehydrogenase complex assembly;0.0491202140886656!GO:0033108;mitochondrial respiratory chain complex assembly;0.0491202140886656!GO:0006383;transcription from RNA polymerase III promoter;0.0496338938379861!GO:0006897;endocytosis;0.049777598762155!GO:0010324;membrane invagination;0.049777598762155!GO:0016481;negative regulation of transcription;0.0498063680074775
|sample_id=11523
|sample_id=11523
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=liver
|sample_tissue=liver
|top_motifs=HNF4A_NR2F1,2:8.12072270132;HNF1A:7.49141154743;FOXA2:6.65191124675;NR6A1:5.70561253248;RXR{A,B,G}_{NR1H2,PPAR}dimers:5.19476596438;AR:3.20481073147;FOX{F1,F2,J1}:2.96430279982;EVI1:2.86839236306;STAT2,4,6:2.8438520855;CUX2:2.81594298239;BPTF:2.4403694026;FOXD3:2.34736039494;ALX4:2.25161724029;NR1H4:2.2181446487;ARID5B:1.94108585384;POU6F1:1.91635098128;ADNP_IRX_SIX_ZHX:1.8788126578;NKX2-1,4:1.86335404525;DBP:1.70138799043;FOX{D1,D2}:1.63719891384;ONECUT1,2:1.6273328578;PAX1,9:1.60739106029;NFE2L1:1.58543833265;T:1.57228999716;MTF1:1.47197001921;GLI1..3:1.4581282146;NFIL3:1.34717453417;HOX{A4,D4}:1.34646497847;PAX4:1.33355316235;FOXM1:1.31885434621;MYOD1:1.26065914093;FOXP3:1.2602142333;ZBTB16:1.17745538921;RXRA_VDR{dimer}:1.11472283783;GATA6:1.09949309862;HLF:1.08562170218;RBPJ:1.02140407995;PPARG:0.978409557981;SNAI1..3:0.93501986754;PDX1:0.911002854432;TLX2:0.907654085367;CEBPA,B_DDIT3:0.901257497817;FOXQ1:0.872703887618;FOX{I1,J2}:0.86233519081;TAL1_TCF{3,4,12}:0.846685921903;FOXL1:0.758444866099;HOXA9_MEIS1:0.729533569091;bHLH_family:0.662518827137;ZEB1:0.654767954875;PBX1:0.645705867661;IRF7:0.628588818926;PAX3,7:0.608843625731;RXR{A,B,G}:0.558230428494;EN1,2:0.501332362582;HMGA1,2:0.482529073699;ATF6:0.451874557815;LMO2:0.440252297227;UFEwm:0.394030643906;YY1:0.390955493033;NKX3-2:0.382319360579;NR5A1,2:0.362775730058;PAX6:0.360885467685;FOXP1:0.27395058206;TBP:0.214362750756;AIRE:0.209114484077;EP300:0.186105111343;STAT1,3:0.181030199884;TEF:0.139064771299;HIF1A:0.0682531974781;HOX{A5,B5}:0.053371298188;TFCP2:0.0433540547179;CRX:0.0285428819149;TGIF1:0.00469485899234;GFI1:-0.0404189135356;GCM1,2:-0.0457396906444;CDX1,2,4:-0.0720363821232;NHLH1,2:-0.0942601656517;ALX1:-0.101081608799;NFIX:-0.115185032388;MYFfamily:-0.120955938121;HIC1:-0.127617229285;ZNF423:-0.182655379046;IKZF2:-0.188057746299;PAX2:-0.200757149167;VSX1,2:-0.201605380576;TLX1..3_NFIC{dimer}:-0.21582310323;SMAD1..7,9:-0.266525678239;SREBF1,2:-0.269497902651;DMAP1_NCOR{1,2}_SMARC:-0.275578949225;MED-1{core}:-0.27854064602;IRF1,2:-0.345725374079;RORA:-0.345821936028;KLF4:-0.348944036037;ATF5_CREB3:-0.382825610489;NKX2-2,8:-0.385768100034;MAFB:-0.40719899319;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.443134750186;HAND1,2:-0.451130184618;MTE{core}:-0.490941131283;NFY{A,B,C}:-0.506032611087;FOXN1:-0.519385082965;STAT5{A,B}:-0.519631523398;NFKB1_REL_RELA:-0.520139218415;REST:-0.590089418315;OCT4_SOX2{dimer}:-0.60581225104;ZNF143:-0.607961169918;TOPORS:-0.614540316953;ELF1,2,4:-0.619474702967;NFE2:-0.642303302952;PAX5:-0.686671205154;NR3C1:-0.690484303156;SP1:-0.691313567047;GZF1:-0.712143394288;MYBL2:-0.715904107543;IKZF1:-0.740868068346;SOX{8,9,10}:-0.749441421121;SOX5:-0.773812993931;SPI1:-0.788978520345;MEF2{A,B,C,D}:-0.803647957541;SOX17:-0.809475266558;LHX3,4:-0.811849467105;FOXO1,3,4:-0.814574815084;EBF1:-0.859888244805;BREu{core}:-0.863060273586;PITX1..3:-0.899261509122;TP53:-0.900976702992;RUNX1..3:-0.907113345515;ZFP161:-0.920011973614;EGR1..3:-0.921974392031;TBX4,5:-0.923719553004;SPIB:-0.944923545896;HES1:-0.946367130835;ELK1,4_GABP{A,B1}:-0.948419516336;MAZ:-0.981453046392;POU1F1:-0.993762036601;BACH2:-1.01883114491;NRF1:-1.03468832774;ZNF238:-1.05414285271;FOS_FOS{B,L1}_JUN{B,D}:-1.05604840296;ETS1,2:-1.06392579139;GTF2I:-1.0697025173;TFAP4:-1.07320772182;FOSL2:-1.07856297346;CREB1:-1.1108648681;NFATC1..3:-1.1150402525;RFX2..5_RFXANK_RFXAP:-1.12758334537;LEF1_TCF7_TCF7L1,2:-1.16732342251;POU3F1..4:-1.17628539885;ESR1:-1.18572693465;HOX{A6,A7,B6,B7}:-1.19014165194;E2F1..5:-1.19225520695;TEAD1:-1.19811352603;GATA4:-1.21394199555;PATZ1:-1.22000819585;TFAP2{A,C}:-1.23517847606;NFE2L2:-1.24176547981;GFI1B:-1.26421177023;HMX1:-1.27619367876;POU2F1..3:-1.29429005877;HSF1,2:-1.30623816474;NKX2-3_NKX2-5:-1.31232843602;HBP1_HMGB_SSRP1_UBTF:-1.3264808975;RFX1:-1.3322820716;RREB1:-1.33731585789;ESRRA:-1.3547221655;ATF4:-1.37665944789;ZIC1..3:-1.38715165179;TFAP2B:-1.41832968832;AHR_ARNT_ARNT2:-1.41905301524;ZBTB6:-1.44115275753;PRRX1,2:-1.57333899237;GTF2A1,2:-1.6252754814;SRF:-1.64337162861;MYB:-1.64670064897;JUN:-1.70884943071;SPZ1:-1.72432518345;PRDM1:-1.77967960846;NANOG{mouse}:-1.83539012139;NKX3-1:-1.86873010188;MZF1:-1.91007522003;NKX6-1,2:-1.99863511123;ATF2:-2.061727521;ZNF148:-2.124956038;ZNF384:-2.24069569309;SOX2:-2.26257551096;POU5F1:-2.27341965474;NANOG:-2.36753927731;CDC5L:-2.38536464987;PAX8:-2.41746000554;XBP1:-2.4307148547;XCPE1{core}:-2.47552143979;TFDP1:-2.54602133789
|top_motifs=HNF4A_NR2F1,2:8.12072270132;HNF1A:7.49141154743;FOXA2:6.65191124675;NR6A1:5.70561253248;RXR{A,B,G}_{NR1H2,PPAR}dimers:5.19476596438;AR:3.20481073147;FOX{F1,F2,J1}:2.96430279982;EVI1:2.86839236306;STAT2,4,6:2.8438520855;CUX2:2.81594298239;BPTF:2.4403694026;FOXD3:2.34736039494;ALX4:2.25161724029;NR1H4:2.2181446487;ARID5B:1.94108585384;POU6F1:1.91635098128;ADNP_IRX_SIX_ZHX:1.8788126578;NKX2-1,4:1.86335404525;DBP:1.70138799043;FOX{D1,D2}:1.63719891384;ONECUT1,2:1.6273328578;PAX1,9:1.60739106029;NFE2L1:1.58543833265;T:1.57228999716;MTF1:1.47197001921;GLI1..3:1.4581282146;NFIL3:1.34717453417;HOX{A4,D4}:1.34646497847;PAX4:1.33355316235;FOXM1:1.31885434621;MYOD1:1.26065914093;FOXP3:1.2602142333;ZBTB16:1.17745538921;RXRA_VDR{dimer}:1.11472283783;GATA6:1.09949309862;HLF:1.08562170218;RBPJ:1.02140407995;PPARG:0.978409557981;SNAI1..3:0.93501986754;PDX1:0.911002854432;TLX2:0.907654085367;CEBPA,B_DDIT3:0.901257497817;FOXQ1:0.872703887618;FOX{I1,J2}:0.86233519081;TAL1_TCF{3,4,12}:0.846685921903;FOXL1:0.758444866099;HOXA9_MEIS1:0.729533569091;bHLH_family:0.662518827137;ZEB1:0.654767954875;PBX1:0.645705867661;IRF7:0.628588818926;PAX3,7:0.608843625731;RXR{A,B,G}:0.558230428494;EN1,2:0.501332362582;HMGA1,2:0.482529073699;ATF6:0.451874557815;LMO2:0.440252297227;UFEwm:0.394030643906;YY1:0.390955493033;NKX3-2:0.382319360579;NR5A1,2:0.362775730058;PAX6:0.360885467685;FOXP1:0.27395058206;TBP:0.214362750756;AIRE:0.209114484077;EP300:0.186105111343;STAT1,3:0.181030199884;TEF:0.139064771299;HIF1A:0.0682531974781;HOX{A5,B5}:0.053371298188;TFCP2:0.0433540547179;CRX:0.0285428819149;TGIF1:0.00469485899234;GFI1:-0.0404189135356;GCM1,2:-0.0457396906444;CDX1,2,4:-0.0720363821232;NHLH1,2:-0.0942601656517;ALX1:-0.101081608799;NFIX:-0.115185032388;MYFfamily:-0.120955938121;HIC1:-0.127617229285;ZNF423:-0.182655379046;IKZF2:-0.188057746299;PAX2:-0.200757149167;VSX1,2:-0.201605380576;TLX1..3_NFIC{dimer}:-0.21582310323;SMAD1..7,9:-0.266525678239;SREBF1,2:-0.269497902651;DMAP1_NCOR{1,2}_SMARC:-0.275578949225;MED-1{core}:-0.27854064602;IRF1,2:-0.345725374079;RORA:-0.345821936028;KLF4:-0.348944036037;ATF5_CREB3:-0.382825610489;NKX2-2,8:-0.385768100034;MAFB:-0.40719899319;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.443134750186;HAND1,2:-0.451130184618;MTE{core}:-0.490941131283;NFY{A,B,C}:-0.506032611087;FOXN1:-0.519385082965;STAT5{A,B}:-0.519631523398;NFKB1_REL_RELA:-0.520139218415;REST:-0.590089418315;OCT4_SOX2{dimer}:-0.60581225104;ZNF143:-0.607961169918;TOPORS:-0.614540316953;ELF1,2,4:-0.619474702967;NFE2:-0.642303302952;PAX5:-0.686671205154;NR3C1:-0.690484303156;SP1:-0.691313567047;GZF1:-0.712143394288;MYBL2:-0.715904107543;IKZF1:-0.740868068346;SOX{8,9,10}:-0.749441421121;SOX5:-0.773812993931;SPI1:-0.788978520345;MEF2{A,B,C,D}:-0.803647957541;SOX17:-0.809475266558;LHX3,4:-0.811849467105;FOXO1,3,4:-0.814574815084;EBF1:-0.859888244805;BREu{core}:-0.863060273586;PITX1..3:-0.899261509122;TP53:-0.900976702992;RUNX1..3:-0.907113345515;ZFP161:-0.920011973614;EGR1..3:-0.921974392031;TBX4,5:-0.923719553004;SPIB:-0.944923545896;HES1:-0.946367130835;ELK1,4_GABP{A,B1}:-0.948419516336;MAZ:-0.981453046392;POU1F1:-0.993762036601;BACH2:-1.01883114491;NRF1:-1.03468832774;ZNF238:-1.05414285271;FOS_FOS{B,L1}_JUN{B,D}:-1.05604840296;ETS1,2:-1.06392579139;GTF2I:-1.0697025173;TFAP4:-1.07320772182;FOSL2:-1.07856297346;CREB1:-1.1108648681;NFATC1..3:-1.1150402525;RFX2..5_RFXANK_RFXAP:-1.12758334537;LEF1_TCF7_TCF7L1,2:-1.16732342251;POU3F1..4:-1.17628539885;ESR1:-1.18572693465;HOX{A6,A7,B6,B7}:-1.19014165194;E2F1..5:-1.19225520695;TEAD1:-1.19811352603;GATA4:-1.21394199555;PATZ1:-1.22000819585;TFAP2{A,C}:-1.23517847606;NFE2L2:-1.24176547981;GFI1B:-1.26421177023;HMX1:-1.27619367876;POU2F1..3:-1.29429005877;HSF1,2:-1.30623816474;NKX2-3_NKX2-5:-1.31232843602;HBP1_HMGB_SSRP1_UBTF:-1.3264808975;RFX1:-1.3322820716;RREB1:-1.33731585789;ESRRA:-1.3547221655;ATF4:-1.37665944789;ZIC1..3:-1.38715165179;TFAP2B:-1.41832968832;AHR_ARNT_ARNT2:-1.41905301524;ZBTB6:-1.44115275753;PRRX1,2:-1.57333899237;GTF2A1,2:-1.6252754814;SRF:-1.64337162861;MYB:-1.64670064897;JUN:-1.70884943071;SPZ1:-1.72432518345;PRDM1:-1.77967960846;NANOG{mouse}:-1.83539012139;NKX3-1:-1.86873010188;MZF1:-1.91007522003;NKX6-1,2:-1.99863511123;ATF2:-2.061727521;ZNF148:-2.124956038;ZNF384:-2.24069569309;SOX2:-2.26257551096;POU5F1:-2.27341965474;NANOG:-2.36753927731;CDC5L:-2.38536464987;PAX8:-2.41746000554;XBP1:-2.4307148547;XCPE1{core}:-2.47552143979;TFDP1:-2.54602133789
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11523-119I2;search_select_hide=table117:FF:11523-119I2
}}
}}

Latest revision as of 18:06, 4 June 2020

Name:Hepatocyte, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12340
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typehepatocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC5205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005826
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12340 CAGE DRX008307 DRR009179
Accession ID Hg19

Library idBAMCTSS
CNhs12340 DRZ000604 DRZ001989
Accession ID Hg38

Library idBAMCTSS
CNhs12340 DRZ011954 DRZ013339
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005826
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10066.AGTCAA sRNA-Seq DRX037266 DRR041632
Accession ID Hg19

Library idBAMCTSS
SRhi10066.AGTCAA DRZ007274


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.706
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.479
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.783
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.019
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle1.113
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.681
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney1.047
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.789
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.903
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0685
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.663
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal1.047
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas1.242
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.356
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12340

Jaspar motifP-value
MA0002.20.793
MA0003.10.0162
MA0004.10.716
MA0006.10.322
MA0007.10.0701
MA0009.10.424
MA0014.10.481
MA0017.17.32059e-20
MA0018.23.65899e-4
MA0019.10.935
MA0024.10.0503
MA0025.10.395
MA0027.10.901
MA0028.10.205
MA0029.10.263
MA0030.10.183
MA0031.10.319
MA0035.20.0241
MA0038.10.135
MA0039.20.493
MA0040.10.671
MA0041.10.766
MA0042.10.727
MA0043.10.0349
MA0046.12.72428e-60
MA0047.27.17142e-4
MA0048.10.995
MA0050.10.967
MA0051.10.968
MA0052.10.0556
MA0055.10.86
MA0057.10.358
MA0058.10.697
MA0059.10.139
MA0060.10.00762
MA0061.10.813
MA0062.20.00687
MA0065.22.17177e-11
MA0066.10.0499
MA0067.10.00371
MA0068.10.00945
MA0069.10.0903
MA0070.10.82
MA0071.10.0777
MA0072.10.0839
MA0073.10.977
MA0074.10.137
MA0076.10.0536
MA0077.10.301
MA0078.10.852
MA0079.20.274
MA0080.25.43536e-8
MA0081.10.0182
MA0083.10.0118
MA0084.10.669
MA0087.10.821
MA0088.10.469
MA0090.10.645
MA0091.10.563
MA0092.10.356
MA0093.10.745
MA0099.23.08867e-7
MA0100.10.44
MA0101.10.0558
MA0102.20.885
MA0103.10.00836
MA0104.20.593
MA0105.10.0365
MA0106.10.359
MA0107.10.0417
MA0108.20.00567
MA0111.10.544
MA0112.21.36333e-6
MA0113.10.13
MA0114.11.39163e-18
MA0115.12.26243e-9
MA0116.11.10544e-4
MA0117.10.697
MA0119.10.0552
MA0122.10.639
MA0124.10.881
MA0125.10.728
MA0131.10.63
MA0135.10.949
MA0136.13.68003e-7
MA0137.20.213
MA0138.20.0707
MA0139.10.108
MA0140.10.0778
MA0141.11.12215e-4
MA0142.10.0286
MA0143.10.248
MA0144.10.113
MA0145.10.586
MA0146.10.207
MA0147.10.472
MA0148.10.00253
MA0149.10.194
MA0150.10.311
MA0152.12.62016e-4
MA0153.11.3779e-35
MA0154.10.0266
MA0155.10.546
MA0156.10.00129
MA0157.10.249
MA0159.19.97319e-5
MA0160.10.00894
MA0162.10.27
MA0163.17.00813e-6
MA0164.10.853
MA0258.11.82311e-4
MA0259.10.768



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12340

Novel motifP-value
10.0235
100.119
1000.176
1010.853
1020.209
1030.0436
1040.875
1050.367
1060.0422
1070.0426
1080.338
1090.202
110.172
1100.152
1110.132
1120.0219
1130.266
1140.0213
1150.648
1160.303
1170.238
1180.209
1190.0195
120.463
1200.998
1210.342
1220.579
1230.755
1240.0774
1250.56
1260.105
1270.557
1280.129
1290.0954
130.0748
1300.019
1310.714
1320.583
1330.513
1340.576
1350.847
1360.889
1370.35
1380.281
1390.692
140.674
1400.107
1410.0332
1420.278
1430.037
1440.793
1450.351
1460.123
1470.897
1480.0699
1490.0678
150.125
1500.628
1510.272
1520.643
1530.701
1540.594
1550.0439
1560.695
1570.791
1580.995
1590.744
160.174
1600.135
1610.395
1620.634
1630.654
1640.111
1650.0023
1660.878
1670.0182
1680.745
1693.96185e-4
170.32
180.693
190.0514
20.684
200.735
210.596
220.212
230.26
240.881
250.977
260.0352
270.434
280.75
290.176
30.168
300.875
310.387
320.463
330.4
340.91
350.0815
360.0761
370.249
380.315
390.386
40.497
400.0861
410.398
420.374
430.161
440.00219
450.591
460.106
470.218
480.239
490.161
50.293
500.698
510.733
520.19
530.956
540.556
550.245
560.358
570.484
580.35
590.17
60.703
600.0619
610.617
620.198
630.129
640.317
650.178
660.283
670.0925
680.717
690.872
70.111
700.0808
710.0501
720.495
730.417
740.692
750.131
760.984
770.067
780.0472
790.629
80.0374
800.562
810.298
820.188
830.435
840.397
850.0359
860.41
870.863
880.424
890.0665
90.873
900.129
910.101
920.185
930.427
940.894
950.813
960.171
970.341
980.258
990.124



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12340


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000078 (human hepatocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)

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