FF:11548-120B9: Difference between revisions

Latest revision as of 18:08, 4 June 2020

Name:	Mesenchymal Stem Cells - Wharton's Jelly, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11057
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical cord
dev stage	fetus
sex	female
age	?
cell type	mesenchymal stem cell
cell line	NA
company	CET
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005913

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11057		CAGE		DRX008345		DRR009217

Accession ID Hg19

Library id		BAM		CTSS
CNhs11057		DRZ000642		DRZ002027

Accession ID Hg38

Library id		BAM		CTSS
CNhs11057		DRZ011992		DRZ013377

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005913

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10007.CAGATC		sRNA-Seq		DRX037094		DRR041460

Accession ID Hg19

Library id		BAM		CTSS
SRhi10007.CAGATC		DRZ007102

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0292
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.415
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.181
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0372
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	2.92893e-4
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.217
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00118
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0153
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0528
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.809
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.249
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.142
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0249
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0528
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00541
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.531
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.0528
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0172
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0999
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.384
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.458
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.38
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.613
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.627
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.487
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11057

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.382
MA0003.1	MA0003.1	0.933
MA0004.1	MA0004.1	0.281
MA0006.1	MA0006.1	0.264
MA0007.1	MA0007.1	0.608
MA0009.1	MA0009.1	0.00545
MA0014.1	MA0014.1	0.5
MA0017.1	MA0017.1	0.176
MA0018.2	MA0018.2	1.34977e-5
MA0019.1	MA0019.1	0.599
MA0024.1	MA0024.1	2.90397e-11
MA0025.1	MA0025.1	0.0122
MA0027.1	MA0027.1	0.574
MA0028.1	MA0028.1	0.793
MA0029.1	MA0029.1	0.634
MA0030.1	MA0030.1	0.815
MA0031.1	MA0031.1	0.461
MA0035.2	MA0035.2	0.323
MA0038.1	MA0038.1	0.022
MA0039.2	MA0039.2	1.72589e-4
MA0040.1	MA0040.1	0.355
MA0041.1	MA0041.1	0.578
MA0042.1	MA0042.1	0.96
MA0043.1	MA0043.1	0.0191
MA0046.1	MA0046.1	0.327
MA0047.2	MA0047.2	0.474
MA0048.1	MA0048.1	0.0576
MA0050.1	MA0050.1	3.47203e-6
MA0051.1	MA0051.1	0.00792
MA0052.1	MA0052.1	0.00213
MA0055.1	MA0055.1	0.874
MA0057.1	MA0057.1	0.569
MA0058.1	MA0058.1	0.288
MA0059.1	MA0059.1	0.819
MA0060.1	MA0060.1	3.17291e-15
MA0061.1	MA0061.1	0.124
MA0062.2	MA0062.2	0.00141
MA0065.2	MA0065.2	0.0225
MA0066.1	MA0066.1	0.424
MA0067.1	MA0067.1	0.0735
MA0068.1	MA0068.1	0.0631
MA0069.1	MA0069.1	0.0771
MA0070.1	MA0070.1	0.554
MA0071.1	MA0071.1	0.99
MA0072.1	MA0072.1	0.817
MA0073.1	MA0073.1	0.812
MA0074.1	MA0074.1	0.649
MA0076.1	MA0076.1	0.5
MA0077.1	MA0077.1	0.867
MA0078.1	MA0078.1	0.664
MA0079.2	MA0079.2	0.996
MA0080.2	MA0080.2	1.34344e-9
MA0081.1	MA0081.1	0.0131
MA0083.1	MA0083.1	0.0301
MA0084.1	MA0084.1	0.552
MA0087.1	MA0087.1	0.904
MA0088.1	MA0088.1	0.26
MA0090.1	MA0090.1	2.60338e-6
MA0091.1	MA0091.1	0.42
MA0092.1	MA0092.1	0.177
MA0093.1	MA0093.1	0.502
MA0099.2	MA0099.2	0.00317
MA0100.1	MA0100.1	0.128
MA0101.1	MA0101.1	0.334
MA0102.2	MA0102.2	0.714
MA0103.1	MA0103.1	0.002
MA0104.2	MA0104.2	0.0472
MA0105.1	MA0105.1	0.0488
MA0106.1	MA0106.1	0.126
MA0107.1	MA0107.1	0.673
MA0108.2	MA0108.2	0.906
MA0111.1	MA0111.1	0.186
MA0112.2	MA0112.2	0.877
MA0113.1	MA0113.1	0.89
MA0114.1	MA0114.1	0.182
MA0115.1	MA0115.1	0.0326
MA0116.1	MA0116.1	0.00364
MA0117.1	MA0117.1	0.51
MA0119.1	MA0119.1	0.499
MA0122.1	MA0122.1	0.337
MA0124.1	MA0124.1	0.553
MA0125.1	MA0125.1	0.0519
MA0131.1	MA0131.1	0.497
MA0135.1	MA0135.1	0.0625
MA0136.1	MA0136.1	2.63559e-10
MA0137.2	MA0137.2	0.261
MA0138.2	MA0138.2	0.138
MA0139.1	MA0139.1	0.804
MA0140.1	MA0140.1	0.933
MA0141.1	MA0141.1	0.127
MA0142.1	MA0142.1	0.0752
MA0143.1	MA0143.1	0.973
MA0144.1	MA0144.1	0.497
MA0145.1	MA0145.1	0.575
MA0146.1	MA0146.1	0.136
MA0147.1	MA0147.1	0.0751
MA0148.1	MA0148.1	0.882
MA0149.1	MA0149.1	0.905
MA0150.1	MA0150.1	0.424
MA0152.1	MA0152.1	0.199
MA0153.1	MA0153.1	0.905
MA0154.1	MA0154.1	0.081
MA0155.1	MA0155.1	0.274
MA0156.1	MA0156.1	1.49684e-4
MA0157.1	MA0157.1	0.442
MA0159.1	MA0159.1	0.29
MA0160.1	MA0160.1	0.0378
MA0162.1	MA0162.1	0.463
MA0163.1	MA0163.1	0.465
MA0164.1	MA0164.1	0.277
MA0258.1	MA0258.1	0.877
MA0259.1	MA0259.1	0.161

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11057

Novel motif	Logo	P-value
1	1	0.414
10	10	0.552
100	100	0.927
101	101	0.645
102	102	0.183
103	103	0.463
104	104	0.915
105	105	0.139
106	106	0.129
107	107	0.305
108	108	0.48
109	109	0.364
11	11	0.264
110	110	0.679
111	111	0.182
112	112	0.89
113	113	0.00128
114	114	0.956
115	115	0.22
116	116	0.227
117	117	0.277
118	118	0.271
119	119	0.943
12	12	0.174
120	120	0.971
121	121	0.684
122	122	0.18
123	123	0.0805
124	124	0.51
125	125	0.468
126	126	0.29
127	127	0.946
128	128	0.565
129	129	0.188
13	13	0.497
130	130	0.769
131	131	0.0515
132	132	0.643
133	133	0.355
134	134	0.317
135	135	0.619
136	136	0.631
137	137	0.253
138	138	0.982
139	139	0.0286
14	14	0.0842
140	140	0.464
141	141	0.0433
142	142	0.736
143	143	0.756
144	144	0.4
145	145	0.886
146	146	0.685
147	147	0.326
148	148	0.295
149	149	0.0412
15	15	0.948
150	150	0.228
151	151	0.984
152	152	0.0238
153	153	0.189
154	154	0.674
155	155	1.78201e-4
156	156	0.34
157	157	0.681
158	158	0.0077
159	159	0.288
16	16	0.164
160	160	0.233
161	161	0.704
162	162	0.388
163	163	0.511
164	164	0.129
165	165	0.872
166	166	0.0515
167	167	0.454
168	168	0.18
169	169	0.75
17	17	0.991
18	18	0.219
19	19	0.715
2	2	0.779
20	20	0.563
21	21	0.843
22	22	0.844
23	23	0.429
24	24	0.843
25	25	0.0745
26	26	0.256
27	27	0.593
28	28	0.383
29	29	0.718
3	3	0.807
30	30	0.677
31	31	0.986
32	32	3.16451e-8
33	33	0.643
34	34	0.804
35	35	0.677
36	36	0.377
37	37	0.289
38	38	0.0534
39	39	0.319
4	4	0.297
40	40	0.198
41	41	0.333
42	42	0.14
43	43	0.404
44	44	0.802
45	45	0.666
46	46	0.516
47	47	0.129
48	48	0.479
49	49	0.0813
5	5	0.613
50	50	0.936
51	51	0.596
52	52	0.931
53	53	0.333
54	54	0.869
55	55	0.048
56	56	0.566
57	57	0.941
58	58	0.0209
59	59	0.279
6	6	0.453
60	60	0.322
61	61	0.299
62	62	0.0795
63	63	0.88
64	64	0.442
65	65	0.243
66	66	0.247
67	67	0.333
68	68	0.351
69	69	0.956
7	7	0.0582
70	70	0.676
71	71	0.887
72	72	0.542
73	73	0.0877
74	74	0.336
75	75	0.53
76	76	0.903
77	77	0.88
78	78	0.0898
79	79	0.0185
8	8	0.997
80	80	0.614
81	81	0.675
82	82	0.452
83	83	0.898
84	84	0.457
85	85	0.714
86	86	0.953
87	87	0.325
88	88	0.821
89	89	0.349
9	9	0.854
90	90	0.92
91	91	0.89
92	92	0.44
93	93	0.434
94	94	0.816
95	95	0.644
96	96	0.609
97	97	0.138
98	98	0.00417
99	99	0.046

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11057

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000095 human mesenchymal stem cell of Wharton's jelly sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)
0002568 (mesenchymal stem cell of Wharton's jelly)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)
0000095 (human mesenchymal stem cell of Wharton's jelly sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005913
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005913
+|accession_numbers=CAGE;DRX008345;DRR009217;DRZ000642;DRZ002027;DRZ011992;DRZ013377
+|accession_numbers_RNASeq=sRNA-Seq;DRX037094;DRR041460;DRZ007102
 |ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569,CL:0002568
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.55!ZBED1;;chr10:64576105..64576133,-!p1@EGR2!1.54!67.74!EGR2;;chr4:174451370..174451387,-!p1@HAND2!1.53!32.71!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.47!28.57!HOXC5;;chr16:86544113..86544145,+!p1@FOXF1!1.46!34.13!FOXF1;;chr4:111558135..111558198,-!p2@PITX2!1.34!20.94!PITX2;;chr12:66218836..66218888,+!p1@HMGA2!1.33!184.86!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.32!61.15!GATA6;;chr12:54402745..54402788,+!p1@HOXC8!1.30!18.87!HOXC8;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.52!CREB3L1;;chr20:50179368..50179392,-!p2@NFATC2!1.27!22.62!NFATC2;;chr15:83953397..83953425,-!p1@BNC1!1.27!20.17!BNC1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!77.18!HMGA2;;chr5:142780189..142780223,-!p6@NR3C1!1.25!16.68!NR3C1;;chr11:61520075..61520136,+!p1@C11orf9!1.22!32.45!C11orf9;;chr18:19749386..19749404,+!p2@GATA6!1.15!18.87!GATA6;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.54!HOXC9;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.55!CREB3L1;;chr12:26277817..26277863,-!p2@BHLHE41!1.11!16.03!BHLHE41;;chr12:66218904..66218913,+!p11@HMGA2!1.10!11.63!HMGA2;;chr7:1577899..1577943,+!p3@MAFK!1.10!11.63!MAFK;;chr19:45971246..45971265,+!p1@FOSB!1.09!209.16!FOSB;;chr21:36421535..36421610,-!p2@RUNX1!1.09!40.33!RUNX1;;chr6:134210243..134210257,+!p1@TCF21!1.05!10.21!TCF21;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.22!HOXB7;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.69!HMGA2;;chr18:53068911..53068935,-!p4@TCF4!0.99!9.95!TCF4;;chr15:42749722..42749739,-!p2@ZFP106!0.98!15.38!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.98!13.83!PAWR;;chr12:66218923..66218934,+!p14@HMGA2!0.98!8.53!HMGA2;;chr3:5021268..5021282,+!p4@BHLHE40!0.97!17.45!BHLHE40;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.27!HOXB6;;chr5:142780237..142780261,-!p7@NR3C1!0.96!8.14!NR3C1;;chr6:1312325..1312340,+!p1@FOXQ1!0.95!13.19!FOXQ1;;chr4:174450089..174450153,-!p2@HAND2!0.95!8.01!HAND2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.95!7.89!SEBOX;;chr3:25469724..25469773,+!p1@RARB!0.94!11.38!RARB;;chr4:111544219..111544240,-!p1@PITX2!0.92!7.24!PITX2;;chr3:170076314..170076334,+!p2@SKIL!0.91!9.57!SKIL;;chr12:54402790..54402805,+!p2@HOXC8!0.91!7.11!HOXC8;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.11!HOXB6;;chr3:178789522..178789564,-!p2@ZMAT3!0.90!53.91!ZMAT3;;chr17:46132044..46132080,+!p4@NFE2L1!0.90!6.98!NFE2L1;;chr1:151032860..151032918,+!p1@MLLT11!0.88!82.73!MLLT11;;chr12:26277956..26277980,-!p1@BHLHE41!0.88!25.08!BHLHE41;;chr17:46675420..46675465,-!p3@HOXB6!0.88!7.63!HOXB6;;chr7:35293685..35293718,-!p1@TBX20!0.88!6.59!TBX20;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.07!TWIST2;;chr19:42636586..42636607,-!p1@POU2F2!0.86!18.23!POU2F2;;chr15:96869255..96869291,+!p6@NR2F2!0.86!11.76!NR2F2;;chr2:176969228..176969260,+!p1@HOXD11!0.85!6.08!HOXD11;;chr7:27192185..27192209,-!p1@HOXA3!0.83!5.69!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.69!HOXA11;;chr7:26191809..26191890,+!p1@NFE2L3!0.82!29.47!NFE2L3;;chr10:63809106..63809127,+!p1@ARID5B!0.81!79.50!ARID5B;;chr21:30671690..30671762,+!p2@BACH1!0.81!19.65!BACH1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.81!5.43!HOXC5;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.30!HOXC10;;chr12:26277929..26277955,-!p3@BHLHE41!0.79!7.50!BHLHE41;;chr8:72756063..72756125,-!p1@MSC!0.77!10.60!MSC;;chr6:10412600..10412637,-!p1@TFAP2A!0.77!8.53!TFAP2A;;chr7:27224795..27224840,-!p2@HOXA11!0.77!4.91!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!0.77!4.91!HOXC10;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.92!FOXD1;;chr4:174451350..174451363,-!p3@HAND2!0.76!4.78!HAND2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.76!4.78!SEBOX;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.51!TBX2;;chr16:86600426..86600441,+!p1@FOXC2!0.75!12.41!FOXC2;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.01!MECOM;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.41!SNAI2;;chr3:141121847..141121868,+!p5@ZBTB38!0.74!7.24!ZBTB38;;chr7:77428227..77428242,+!p3@PHTF2!0.73!6.85!PHTF2;;chr5:134369879..134369898,-!p2@PITX1!0.73!4.40!PITX1;;chr7:137686763..137686784,-!p5@CREB3L2!0.72!7.89!CREB3L2;;chr15:57511609..57511651,+!p2@TCF12!0.72!7.50!TCF12;;chr12:54422217..54422239,+!p3@HOXC6!0.72!4.27!HOXC6;;chr1:151032922..151032951,+!p2@MLLT11!0.71!7.24!MLLT11;;chr1:158985493..158985535,+!p4@IFI16!0.71!6.59!IFI16;;chr1:158979872..158979898,+!p3@IFI16!0.70!13.57!IFI16;;chr18:19749517..19749531,+!p3@GATA6!0.70!7.76!GATA6;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.69!NR2F2;;chr8:37963466..37963506,+!p3@ASH2L!0.70!5.17!ASH2L;;chr18:19749353..19749367,+!p4@GATA6!0.70!4.01!GATA6;;chr9:35732647..35732678,+!p2@CREB3!0.69!24.69!CREB3;;chr10:63809077..63809089,+!p5@ARID5B!0.69!9.31!ARID5B;;chr12:48298765..48298783,-!p2@VDR!0.69!8.92!VDR;;chr5:134369905..134369972,-!p1@PITX1!0.69!6.33!PITX1;;chr8:72756267..72756296,-!p4@MSC!0.69!6.08!MSC;;chr7:27196267..27196311,-!p1@HOXA7!0.69!3.88!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!0.69!3.88!HOXA9;;chr3:25469815..25469866,+!p3@RARB!0.69!3.88!RARB;;chr12:54380404..54380433,+!p3@HOXC10!0.69!3.88!HOXC10;;chr7:19157248..19157268,-!p1@TWIST1!0.68!11.51!TWIST1;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.72!PAWR;;chr21:36260295..36260310,-!p3@RUNX1!0.68!6.46!RUNX1;;chr12:80085120..80085156,-!p14@PAWR!0.68!3.75!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.66!16.29!ZBTB38;;chr3:101568349..101568365,+!p1@NFKBIZ!0.65!213.94!NFKBIZ;;chr7:77428149..77428220,+!p1@PHTF2!0.65!41.11!PHTF2;;chr6:91006518..91006570,-!p1@BACH2!0.65!8.92!BACH2;;chr2:185463247..185463263,+!p1@ZNF804A!0.65!6.59!ZNF804A;;chr7:44143997..44144008,+!p3@AEBP1!0.65!4.65!AEBP1;;chr7:27205106..27205134,-!p2@HOXA9!0.65!3.49!HOXA9;;chr11:46299443..46299459,+!p4@CREB3L1!0.65!3.49!CREB3L1;;chr12:115121962..115121987,-!p1@TBX3!0.64!32.96!TBX3;;chr8:77593474..77593612,+!p1@ZFHX4!0.64!16.29!ZFHX4;;chr1:211433275..211433335,+!p2@RCOR3!0.64!11.76!RCOR3;;chr7:44143978..44143989,+!p2@AEBP1!0.64!6.72!AEBP1;;chr16:67881588..67881612,-!p2@CENPT!0.64!4.78!CENPT;;chr15:96869222..96869251,+!p18@NR2F2!0.64!4.14!NR2F2;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.36!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!0.64!3.36!HOXB9;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.36!SOX11;;chr3:71630980..71631110,-!p3@FOXP1!0.63!13.19!FOXP1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.57!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.98!HMGA2;;chr12:125002827..125002855,-!p5@NCOR2!0.63!4.91!NCOR2;;chr8:72756213..72756243,-!p5@MSC!0.63!4.40!MSC;;chr11:34642612..34642646,+!p1@EHF!0.63!3.23!EHF;;chr4:111558118..111558133,-!p5@PITX2!0.63!3.23!PITX2;;chr2:239756739..239756755,+!p2@TWIST2!0.62!5.95!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.62!5.30!HMGA2;;chr21:36260463..36260480,-!p9@RUNX1!0.62!4.52!RUNX1;;chr6:10415276..10415341,-!p2@TFAP2A!0.62!4.01!TFAP2A;;chr5:137804484..137804498,+!p2@EGR1!0.61!14.48!EGR1;;chr8:23540441..23540466,-!p1@NKX3-1!0.61!6.85!NKX3-1;;chr6:126102292..126102329,+!p3@NCOA7!0.60!11.51!NCOA7;;chr1:170632959..170632987,+!p4@PRRX1!0.60!3.36!PRRX1;;chr10:64576035..64576046,-!p2@EGR2!0.60!2.97!EGR2;;chr12:54402729..54402743,+!p3@HOXC8!0.60!2.97!HOXC8;;chr5:142780168..142780186,-!p23@NR3C1!0.60!2.97!NR3C1;;chr12:124873357..124873401,-!p1@NCOR2!0.59!40.46!NCOR2;;chr21:36260343..36260402,-!p6@RUNX1!0.59!5.04!RUNX1;;chr12:125002739..125002756,-!p6@NCOR2!0.59!4.65!NCOR2;;chr17:46687959..46688007,-!p2@HOXB7!0.59!4.27!HOXB7;;chr6:10412392..10412409,-!p4@TFAP2A!0.59!3.36!TFAP2A;;chr12:80084167..80084197,-!p5@PAWR!0.58!7.50!PAWR;;chr10:63809134..63809145,+!p6@ARID5B!0.58!7.37!ARID5B;;chr12:66218212..66218244,+!p5@HMGA2!0.58!4.40!HMGA2;;chr8:72755987..72756002,-!p7@MSC!0.58!2.84!MSC;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr16:31076332..31076388,-!p3@ZNF668!0.58!2.84!ZNF668;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!242.38!TAX1BP3;;chr3:193853927..193853944,+!p1@HES1!0.57!110.92!HES1;;chr3:170075436..170075520,+!p1@SKIL!0.57!72.65!SKIL;;chr7:150945754..150945789,-!p2@SMARCD3!0.57!9.95!SMARCD3;;chr5:142780280..142780294,-!p16@NR3C1!0.57!2.71!NR3C1;;chr2:178128149..178128198,-!p2@NFE2L2!0.56!17.32!NFE2L2;;chr3:71179699..71179744,-!p2@FOXP1!0.55!23.53!FOXP1;;chr1:8763440..8763460,-!p2@RERE!0.55!15.64!RERE;;chr1:170633348..170633399,+!p2@PRRX1!0.55!3.75!PRRX1;;chr12:54394309..54394336,+!p2@HOXC9!0.55!2.59!HOXC9;;chr6:10412576..10412599,-!p5@TFAP2A!0.55!2.59!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!0.54!70.84!AEBP1;;chr7:14029283..14029311,-!p1@ETV1!0.54!16.42!ETV1;;chr17:46621937..46621966,-!p2@HOXB2!0.54!7.89!HOXB2;;chr19:57792157..57792170,+!p6@ZNF460!0.54!4.01!ZNF460;;chr12:66218573..66218596,+!p7@HMGA2!0.54!4.01!HMGA2;;chr5:142782823..142782854,-!p3@NR3C1!0.54!3.88!NR3C1;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.46!HOXC9;;chr2:46524537..46524553,+!p1@EPAS1!0.53!305.73!EPAS1;;chr21:36260980..36261011,-!p1@RUNX1!0.53!89.46!RUNX1;;chr12:80084737..80084763,-!p3@PAWR!0.53!10.99!PAWR;;chr17:1959369..1959388,+!p2@HIC1!0.53!7.50!HIC1;;chr8:106330656..106330684,+!p1@ZFPM2!0.53!7.50!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.53!6.33!HOXB2;;chr3:178789993..178790049,-!p5@ZMAT3!0.53!3.88!ZMAT3;;chr12:66218443..66218461,+!p8@HMGA2!0.53!3.23!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.53!3.10!HOXC4;;chr1:212782094..212782109,+!p1@ATF3!0.52!81.83!ATF3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.52!36.58!ZC3H12A;;chr2:74229812..74229867,+!p1@TET3!0.52!6.98!TET3;;chr15:96874244..96874259,+!p5@NR2F2!0.52!6.59!NR2F2;;chr8:116681123..116681143,-!p4@TRPS1!0.52!5.17!TRPS1;;chr7:27196217..27196246,-!p2@HOXA7!0.52!2.33!HOXA7;;chr3:5022272..5022321,+!p7@BHLHE40!0.52!2.33!BHLHE40;;chr3:141087339..141087387,+!p2@ZBTB38!0.51!29.60!ZBTB38;;chr1:158969752..158969780,+!p6@IFI16!0.51!4.52!IFI16;;chr1:221053049..221053075,+!p3@HLX!0.51!4.40!HLX;;chr12:80084137..80084165,-!p10@PAWR!0.51!3.10!PAWR;;chr11:65667846..65667868,-!p1@FOSL1!0.50!75.49!FOSL1;;chr16:69599899..69599919,+!p2@NFAT5!0.50!32.45!NFAT5;;chr7:19157043..19157088,-!p2@TWIST1!0.50!6.59!TWIST1;;chr1:151032782..151032801,+!p4@MLLT11!0.50!5.04!MLLT11;;chr8:145159846..145159889,+!p6@MAF1!0.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:28616312..28616315,+!p8@FOSL2!0.16!0.65!FOSL2;;chr10:31607702..31607755,+!p3@ZEB1!0.16!0.65!ZEB1;;chr9:4300004..4300015,-!p6@GLIS3!0.16!0.65!GLIS3;;chr2:231280908..231280945,+!p1@SP100!0.15!48.86!SP100;;chr10:22292613..22292674,-!p1@DNAJC1!0.15!37.23!DNAJC1;;chr7:102985160..102985273,-!p1@DNAJC2!0.15!31.80!DNAJC2;;chr11:47236489..47236567,+!p2@DDB2!0.15!17.06!DDB2;;chr6:144329384..144329405,-!p1@PLAGL1!0.15!14.09!PLAGL1;;chr19:4065485..4065546,-!p2@ZBTB7A!0.15!10.60!ZBTB7A;;chr12:133532864..133532899,-!p1@ZNF605!0.15!8.66!ZNF605;;chr12:51157744..51157796,+!p2@ATF1!0.15!8.14!ATF1;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.15!7.37!SNAPC4;;chr14:100705335..100705360,+!p4@YY1!0.15!6.59!YY1;;chr7:64838786..64838809,+!p2@ZNF92!0.15!6.59!ZNF92;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.15!6.46!ZNF10;;chr19:9434841..9434886,+!p1@ZNF559!0.15!5.82!ZNF559;;chr7:101459230..101459243,+!p2@CUX1!0.15!5.56!CUX1;;chr5:132299339..132299359,-!p4@AFF4!0.15!5.17!AFF4;;chr20:42543441..42543497,+!p1@TOX2!0.15!5.04!TOX2;;chr16:79634624..79634642,-!p1@MAF!0.15!4.27!MAF;;chr5:321810..321877,+!p1@AHRR!0.15!3.23!AHRR;;chr6:28367510..28367537,-!p1@ZSCAN12!0.15!3.23!ZSCAN12;;chr6:56954867..56954882,+!p2@ZNF451!0.15!2.97!ZNF451;;chr9:2158443..2158481,+!p2@SMARCA2!0.15!2.84!SMARCA2;;chr8:116681409..116681431,-!p2@TRPS1!0.15!2.71!TRPS1;;chr3:44754126..44754171,+!p1@ZNF502!0.15!2.33!ZNF502;;chr7:137563945..137564001,-!p6@CREB3L2!0.15!2.20!CREB3L2;;chr19:56152332..56152347,+!p4@ZNF580!0.15!2.07!ZNF580;;chr1:211432887..211432903,+!p4@RCOR3!0.15!2.07!RCOR3;;chr12:133707172..133707202,+!p2@ZNF10!0.15!2.07!ZNF10;;chr19:926055..926068,+!p2@ARID3A!0.15!1.94!ARID3A;;chr16:1429674..1429703,-!p3@UNKL!0.15!1.29!UNKL;;chr16:30418894..30418909,+!p2@ZNF771!0.15!1.29!ZNF771;;chr17:79885633..79885645,-!p4@MAFG!0.15!1.29!MAFG;;chr17:47492203..47492214,-!p3@PHB!0.15!1.16!PHB;;chr9:86593238..86593252,-!p3@HNRNPK!0.15!1.03!HNRPK;;chr16:69600209..69600234,+!p4@NFAT5!0.15!0.78!NFAT5;;chr18:3450334..3450341,+!p15@TGIF1!0.15!0.78!TGIF1;;chr13:46626824..46626835,-!p8@ZC3H13!0.15!0.78!ZC3H13;;chr22:30162893..30162907,-!p2@ZMAT5!0.15!0.78!ZMAT5;;chr2:148779187..148779222,+!p5@MBD5!0.15!0.78!MBD5;;chr4:2264015..2264041,-!p4@MXD4!0.15!0.65!MXD4;;chr4:81104958..81104981,+!p5@PRDM8!0.15!0.65!PRDM8;;chr1:221052840..221052875,+!p4@HLX!0.15!0.65!HLX;;chr6:41040849..41040860,+!p3@NFYA!0.15!0.65!NFYA;;chr7:106826626..106826630,+!p3@HBP1!0.15!0.65!HBP1;;chr17:41623075..41623101,-!p9@ETV4!0.15!0.65!ETV4;;chr17:41623259..41623278,-!p7@ETV4!0.15!0.65!ETV4;;chr17:46620898..46620927,-!p9@HOXB2!0.15!0.65!HOXB2;;chr5:92919375..92919438,+!p6@NR2F1!0.15!0.52!NR2F1;;chr6:35465058..35465077,-!p2@TEAD3!0.15!0.52!TEAD3;;chr10:63851669..63851682,+!p10@ARID5B!0.15!0.52!ARID5B;;chr6:136610911..136610990,-!p1@BCLAF1!0.14!110.40!BCLAF1;;chr4:41992513..41992561,+!p1@SLC30A9!0.14!80.92!SLC30A9;;chr2:176032843..176032941,-!p1@ATF2!0.14!50.80!ATF2;;chr19:16435625..16435682,+!p1@KLF2!0.14!39.82!KLF2;;chr3:187463248..187463264,-!p1@BCL6!0.14!26.37!BCL6;;chr8:145159415..145159438,+!p2@MAF1!0.14!24.04!MAF1;;chr1:114302086..114302174,-!p1@PHTF1!0.14!22.62!PHTF1;;chr19:58331088..58331106,+!p1@ZNF587!0.14!16.93!ZNF587;;chr16:31724552..31724617,+!p1@ZNF720!0.14!16.68!ZNF720;;chr7:137686824..137686865,-!p2@CREB3L2!0.14!15.25!CREB3L2;;chr12:77459306..77459365,-!p1@E2F7!0.14!15.12!E2F7;;chr17:7387524..7387597,-!p1@ZBTB4!0.14!11.12!ZBTB4;;chr19:52531600..52531685,-!p1@ZNF614!0.14!10.86!ZNF614;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520Wharton%2527s%2520Jelly%252c%2520donor1.CNhs11057.11548-120B9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11548-120B9
 |is_a=EFO:0002091;;FF:0000095
 |is_obsolete=
+|library_id=CNhs11057
+|library_id_phase_based=2:CNhs11057
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11548
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.CAGATC.11548
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11548
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.CAGATC.11548
 |name=Mesenchymal Stem Cells - Wharton's Jelly, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11057,LSID722,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10007,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=120
 |rna_catalog_number=N/A
@@ Line 60: / Line 82: @@
 |rna_tube_id=120B9
 |rna_weight_ug=6.9
+|rnaseq_library_id=SRhi10007.CAGATC
 |sample_age=?
+|sample_category=primary cells
 |sample_cell_catalog=HMSC.WJ-500
 |sample_cell_line=
@@ Line 82: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11548-120B9;search_select_hide=table117:FF:11548-120B9
 }}

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FF:11548-120B9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:08, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0