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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005869
|DRA_sample_Accession=CAGE@SAMD00005869
|accession_numbers=CAGE;DRX008289;DRR009161;DRZ000586;DRZ001971
|accession_numbers=CAGE;DRX008289;DRR009161;DRZ000586;DRZ001971;DRZ011936;DRZ013321
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1.CNhs11074.11555-120C7.hg38.nobarcode.ctss.bed.gz
|id=FF:11555-120C7
|id=FF:11555-120C7
|is_a=EFO:0002091;;FF:0000251
|is_a=EFO:0002091;;FF:0000251
Line 47: Line 52:
|library_id=CNhs11074
|library_id=CNhs11074
|library_id_phase_based=2:CNhs11074
|library_id_phase_based=2:CNhs11074
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11555
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11555
|name=Fibroblast - skin spinal muscular atrophy, donor1
|name=Fibroblast - skin spinal muscular atrophy, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 54: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 92: Line 101:
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.23979697424;NKX2-2,8:2.04619402822;ZNF238:2.03848161531;GZF1:2.01960393322;NKX3-1:1.80534133482;HMGA1,2:1.78894932405;TAL1_TCF{3,4,12}:1.56022178647;MYBL2:1.55352029768;HIF1A:1.39201375776;ESR1:1.35692681081;TFAP4:1.33079986281;XBP1:1.32402917541;NKX3-2:1.30214803187;TEAD1:1.30006237637;NR3C1:1.22594586691;NFIX:1.14274231881;KLF4:1.10094062528;FOXD3:1.059977559;HOX{A5,B5}:1.05937085812;FOXL1:1.02792002873;GFI1B:1.02741963886;TEF:1.02231702162;NANOG{mouse}:1.00376983054;ATF6:0.985684879869;HSF1,2:0.978431529808;DBP:0.957787021903;UFEwm:0.936093882882;TP53:0.925758016977;NKX2-3_NKX2-5:0.915955470332;EVI1:0.915621897755;LHX3,4:0.904474041149;MZF1:0.903338777416;SRF:0.901195051383;SOX17:0.883480990183;EN1,2:0.871795709568;HAND1,2:0.86885364377;MAFB:0.868046512639;HOX{A4,D4}:0.805174140992;ALX4:0.793277627023;GTF2I:0.782957697919;TFAP2{A,C}:0.773704996893;MAZ:0.76118273557;ZNF384:0.752514253648;NFATC1..3:0.749836353201;GTF2A1,2:0.732888779696;GCM1,2:0.72443453554;RXR{A,B,G}:0.704787373146;PATZ1:0.698613690997;PRDM1:0.685029706433;NKX6-1,2:0.683426490689;PDX1:0.649933212019;BPTF:0.647032674072;NFE2L1:0.630516213065;HMX1:0.61332927997;SPZ1:0.605456732674;PAX1,9:0.598362579238;STAT5{A,B}:0.588067178105;TLX1..3_NFIC{dimer}:0.584575866201;ADNP_IRX_SIX_ZHX:0.580206801692;GATA4:0.576932335101;HES1:0.519434544261;NR6A1:0.515751346957;PRRX1,2:0.507819854035;GLI1..3:0.503587914361;MTE{core}:0.500578994894;HLF:0.479919833776;T:0.479871901601;FOXO1,3,4:0.473718114419;RXRA_VDR{dimer}:0.470498162865;STAT1,3:0.458662876186;IKZF1:0.424174149144;TFAP2B:0.418846093072;CDC5L:0.40686796035;NR1H4:0.399612525059;TBX4,5:0.396569364836;CRX:0.395920010959;PAX5:0.395222152698;POU5F1:0.378517552133;GFI1:0.377932750277;MYFfamily:0.375310146321;AIRE:0.373221623092;AHR_ARNT_ARNT2:0.348761691241;YY1:0.336380420348;FOX{I1,J2}:0.336309563575;EBF1:0.331998143723;TFCP2:0.330455518184;IRF1,2:0.317400252143;CEBPA,B_DDIT3:0.310446230235;SOX5:0.304557321401;PAX8:0.261440480429;FOXA2:0.261060927838;DMAP1_NCOR{1,2}_SMARC:0.252353062245;XCPE1{core}:0.226215075056;NFE2L2:0.205481525559;HOX{A6,A7,B6,B7}:0.180736173561;HIC1:0.179372521064;EGR1..3:0.179352145574;SMAD1..7,9:0.177045482475;ZNF148:0.163519181323;POU3F1..4:0.157199989495;ELK1,4_GABP{A,B1}:0.151250564908;MTF1:0.137370910075;EP300:0.136612019334;FOX{D1,D2}:0.115677123422;BACH2:0.109719916777;TFDP1:0.107321426691;STAT2,4,6:0.107133782789;NFE2:0.103232323648;RREB1:0.095764945259;RUNX1..3:0.0893081500213;MEF2{A,B,C,D}:0.0860062368058;ZFP161:0.0734367379234;ZIC1..3:0.0681492382393;NRF1:0.047962654754;NHLH1,2:0.0462710115701;ZBTB6:0.0458031630972;VSX1,2:0.0399474317903;ZNF143:0.0318155520713;HNF1A:0.0256405194487;TBP:0.0204803277459;TOPORS:0.0152482025781;MED-1{core}:0.00342155333633;LEF1_TCF7_TCF7L1,2:-0.0230052750459;FOS_FOS{B,L1}_JUN{B,D}:-0.0706373685838;SP1:-0.07660807924;POU1F1:-0.100985419454;RFX1:-0.10242962106;bHLH_family:-0.143664738561;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.152106110929;CDX1,2,4:-0.152662063066;ARID5B:-0.175440809686;REST:-0.190506400624;PAX3,7:-0.215689551558;ZNF423:-0.224187845762;MYB:-0.246342601193;NKX2-1,4:-0.248822714834;FOSL2:-0.250671911065;RBPJ:-0.280529870859;POU6F1:-0.289397181334;SOX2:-0.294364186676;ALX1:-0.312842614226;ATF5_CREB3:-0.34143724727;TGIF1:-0.357052026864;FOXM1:-0.365851338811;PAX4:-0.405414503275;SREBF1,2:-0.409728969438;HNF4A_NR2F1,2:-0.419775249329;E2F1..5:-0.430599398767;ATF4:-0.434047247419;CREB1:-0.441972344257;SPI1:-0.456173842696;NFKB1_REL_RELA:-0.45689427562;ETS1,2:-0.505931981606;JUN:-0.512513063522;ZBTB16:-0.516705156705;FOXN1:-0.533934142671;FOXP3:-0.537510887507;ATF2:-0.547769525438;TLX2:-0.558056586431;ELF1,2,4:-0.570729992981;IRF7:-0.572375899589;FOXP1:-0.578742939001;AR:-0.579355194354;NFIL3:-0.580076987212;SPIB:-0.589477032691;FOXQ1:-0.607209574932;PAX2:-0.613659204447;CUX2:-0.665025418095;PAX6:-0.665467184012;ONECUT1,2:-0.680971025791;RFX2..5_RFXANK_RFXAP:-0.695256920473;PBX1:-0.723176695235;ESRRA:-0.728396726906;GATA6:-0.732477166817;PPARG:-0.736761306173;IKZF2:-0.754716586208;BREu{core}:-0.760604724727;NFY{A,B,C}:-0.829541903058;FOX{F1,F2,J1}:-0.848760349797;OCT4_SOX2{dimer}:-0.848849913558;ZEB1:-0.850213702126;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.883805504519;POU2F1..3:-0.97263359835;RORA:-0.992041679705;PITX1..3:-0.995585912847;SNAI1..3:-1.00380873299;NANOG:-1.02476929313;NR5A1,2:-1.06397021496;SOX{8,9,10}:-1.15528631658;LMO2:-1.23749165898;HOXA9_MEIS1:-1.43309536516;MYOD1:-1.65849037737
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.23979697424;NKX2-2,8:2.04619402822;ZNF238:2.03848161531;GZF1:2.01960393322;NKX3-1:1.80534133482;HMGA1,2:1.78894932405;TAL1_TCF{3,4,12}:1.56022178647;MYBL2:1.55352029768;HIF1A:1.39201375776;ESR1:1.35692681081;TFAP4:1.33079986281;XBP1:1.32402917541;NKX3-2:1.30214803187;TEAD1:1.30006237637;NR3C1:1.22594586691;NFIX:1.14274231881;KLF4:1.10094062528;FOXD3:1.059977559;HOX{A5,B5}:1.05937085812;FOXL1:1.02792002873;GFI1B:1.02741963886;TEF:1.02231702162;NANOG{mouse}:1.00376983054;ATF6:0.985684879869;HSF1,2:0.978431529808;DBP:0.957787021903;UFEwm:0.936093882882;TP53:0.925758016977;NKX2-3_NKX2-5:0.915955470332;EVI1:0.915621897755;LHX3,4:0.904474041149;MZF1:0.903338777416;SRF:0.901195051383;SOX17:0.883480990183;EN1,2:0.871795709568;HAND1,2:0.86885364377;MAFB:0.868046512639;HOX{A4,D4}:0.805174140992;ALX4:0.793277627023;GTF2I:0.782957697919;TFAP2{A,C}:0.773704996893;MAZ:0.76118273557;ZNF384:0.752514253648;NFATC1..3:0.749836353201;GTF2A1,2:0.732888779696;GCM1,2:0.72443453554;RXR{A,B,G}:0.704787373146;PATZ1:0.698613690997;PRDM1:0.685029706433;NKX6-1,2:0.683426490689;PDX1:0.649933212019;BPTF:0.647032674072;NFE2L1:0.630516213065;HMX1:0.61332927997;SPZ1:0.605456732674;PAX1,9:0.598362579238;STAT5{A,B}:0.588067178105;TLX1..3_NFIC{dimer}:0.584575866201;ADNP_IRX_SIX_ZHX:0.580206801692;GATA4:0.576932335101;HES1:0.519434544261;NR6A1:0.515751346957;PRRX1,2:0.507819854035;GLI1..3:0.503587914361;MTE{core}:0.500578994894;HLF:0.479919833776;T:0.479871901601;FOXO1,3,4:0.473718114419;RXRA_VDR{dimer}:0.470498162865;STAT1,3:0.458662876186;IKZF1:0.424174149144;TFAP2B:0.418846093072;CDC5L:0.40686796035;NR1H4:0.399612525059;TBX4,5:0.396569364836;CRX:0.395920010959;PAX5:0.395222152698;POU5F1:0.378517552133;GFI1:0.377932750277;MYFfamily:0.375310146321;AIRE:0.373221623092;AHR_ARNT_ARNT2:0.348761691241;YY1:0.336380420348;FOX{I1,J2}:0.336309563575;EBF1:0.331998143723;TFCP2:0.330455518184;IRF1,2:0.317400252143;CEBPA,B_DDIT3:0.310446230235;SOX5:0.304557321401;PAX8:0.261440480429;FOXA2:0.261060927838;DMAP1_NCOR{1,2}_SMARC:0.252353062245;XCPE1{core}:0.226215075056;NFE2L2:0.205481525559;HOX{A6,A7,B6,B7}:0.180736173561;HIC1:0.179372521064;EGR1..3:0.179352145574;SMAD1..7,9:0.177045482475;ZNF148:0.163519181323;POU3F1..4:0.157199989495;ELK1,4_GABP{A,B1}:0.151250564908;MTF1:0.137370910075;EP300:0.136612019334;FOX{D1,D2}:0.115677123422;BACH2:0.109719916777;TFDP1:0.107321426691;STAT2,4,6:0.107133782789;NFE2:0.103232323648;RREB1:0.095764945259;RUNX1..3:0.0893081500213;MEF2{A,B,C,D}:0.0860062368058;ZFP161:0.0734367379234;ZIC1..3:0.0681492382393;NRF1:0.047962654754;NHLH1,2:0.0462710115701;ZBTB6:0.0458031630972;VSX1,2:0.0399474317903;ZNF143:0.0318155520713;HNF1A:0.0256405194487;TBP:0.0204803277459;TOPORS:0.0152482025781;MED-1{core}:0.00342155333633;LEF1_TCF7_TCF7L1,2:-0.0230052750459;FOS_FOS{B,L1}_JUN{B,D}:-0.0706373685838;SP1:-0.07660807924;POU1F1:-0.100985419454;RFX1:-0.10242962106;bHLH_family:-0.143664738561;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.152106110929;CDX1,2,4:-0.152662063066;ARID5B:-0.175440809686;REST:-0.190506400624;PAX3,7:-0.215689551558;ZNF423:-0.224187845762;MYB:-0.246342601193;NKX2-1,4:-0.248822714834;FOSL2:-0.250671911065;RBPJ:-0.280529870859;POU6F1:-0.289397181334;SOX2:-0.294364186676;ALX1:-0.312842614226;ATF5_CREB3:-0.34143724727;TGIF1:-0.357052026864;FOXM1:-0.365851338811;PAX4:-0.405414503275;SREBF1,2:-0.409728969438;HNF4A_NR2F1,2:-0.419775249329;E2F1..5:-0.430599398767;ATF4:-0.434047247419;CREB1:-0.441972344257;SPI1:-0.456173842696;NFKB1_REL_RELA:-0.45689427562;ETS1,2:-0.505931981606;JUN:-0.512513063522;ZBTB16:-0.516705156705;FOXN1:-0.533934142671;FOXP3:-0.537510887507;ATF2:-0.547769525438;TLX2:-0.558056586431;ELF1,2,4:-0.570729992981;IRF7:-0.572375899589;FOXP1:-0.578742939001;AR:-0.579355194354;NFIL3:-0.580076987212;SPIB:-0.589477032691;FOXQ1:-0.607209574932;PAX2:-0.613659204447;CUX2:-0.665025418095;PAX6:-0.665467184012;ONECUT1,2:-0.680971025791;RFX2..5_RFXANK_RFXAP:-0.695256920473;PBX1:-0.723176695235;ESRRA:-0.728396726906;GATA6:-0.732477166817;PPARG:-0.736761306173;IKZF2:-0.754716586208;BREu{core}:-0.760604724727;NFY{A,B,C}:-0.829541903058;FOX{F1,F2,J1}:-0.848760349797;OCT4_SOX2{dimer}:-0.848849913558;ZEB1:-0.850213702126;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.883805504519;POU2F1..3:-0.97263359835;RORA:-0.992041679705;PITX1..3:-0.995585912847;SNAI1..3:-1.00380873299;NANOG:-1.02476929313;NR5A1,2:-1.06397021496;SOX{8,9,10}:-1.15528631658;LMO2:-1.23749165898;HOXA9_MEIS1:-1.43309536516;MYOD1:-1.65849037737
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11555-120C7;search_select_hide=table117:FF:11555-120C7
}}
}}

Latest revision as of 18:08, 4 June 2020

Name:Fibroblast - skin spinal muscular atrophy, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11074
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age3 year old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationSplicing (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005869
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11074 CAGE DRX008289 DRR009161
Accession ID Hg19

Library idBAMCTSS
CNhs11074 DRZ000586 DRZ001971
Accession ID Hg38

Library idBAMCTSS
CNhs11074 DRZ011936 DRZ013321
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
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C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11074

Jaspar motifP-value
MA0002.20.229
MA0003.10.97
MA0004.10.0335
MA0006.10.493
MA0007.10.319
MA0009.10.0966
MA0014.10.269
MA0017.10.0737
MA0018.21.04611e-5
MA0019.10.753
MA0024.11.17138e-4
MA0025.10.0627
MA0027.10.442
MA0028.10.224
MA0029.10.53
MA0030.10.799
MA0031.10.771
MA0035.20.0024
MA0038.10.113
MA0039.20.00314
MA0040.10.396
MA0041.10.826
MA0042.10.497
MA0043.10.00448
MA0046.10.593
MA0047.20.763
MA0048.10.061
MA0050.10.667
MA0051.10.354
MA0052.10.407
MA0055.10.995
MA0057.10.776
MA0058.10.0206
MA0059.10.112
MA0060.13.21498e-8
MA0061.10.00441
MA0062.21.07797e-5
MA0065.20.0243
MA0066.10.925
MA0067.10.0129
MA0068.10.078
MA0069.10.0443
MA0070.10.942
MA0071.10.349
MA0072.10.556
MA0073.10.618
MA0074.10.892
MA0076.10.342
MA0077.10.172
MA0078.10.417
MA0079.20.418
MA0080.22.3324e-8
MA0081.10.0146
MA0083.10.0908
MA0084.10.209
MA0087.10.762
MA0088.10.901
MA0090.15.1761e-7
MA0091.10.118
MA0092.10.117
MA0093.10.0543
MA0099.20.119
MA0100.10.405
MA0101.13.72456e-5
MA0102.20.942
MA0103.17.83997e-6
MA0104.20.00177
MA0105.10.0128
MA0106.10.0455
MA0107.14.06061e-4
MA0108.20.366
MA0111.10.0808
MA0112.20.506
MA0113.10.937
MA0114.10.0577
MA0115.10.0708
MA0116.10.184
MA0117.10.746
MA0119.10.726
MA0122.10.554
MA0124.10.569
MA0125.10.622
MA0131.10.793
MA0135.10.331
MA0136.18.86919e-8
MA0137.20.871
MA0138.20.714
MA0139.10.32
MA0140.10.0541
MA0141.10.166
MA0142.10.0632
MA0143.10.737
MA0144.10.944
MA0145.10.727
MA0146.10.654
MA0147.10.00502
MA0148.10.534
MA0149.10.382
MA0150.10.0253
MA0152.10.00883
MA0153.10.209
MA0154.10.277
MA0155.10.604
MA0156.11.21308e-4
MA0157.10.568
MA0159.10.469
MA0160.10.00504
MA0162.10.204
MA0163.10.517
MA0164.10.598
MA0258.10.233
MA0259.10.396



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11074

Novel motifP-value
10.293
100.629
1000.707
1010.236
1020.00565
1030.776
1040.498
1050.664
1060.2
1070.938
1080.924
1090.158
110.264
1100.432
1110.0647
1120.7
1130.00194
1140.64
1150.717
1160.424
1170.109
1180.285
1190.227
120.327
1200.959
1210.518
1220.114
1232.73148e-4
1240.634
1250.873
1260.858
1270.385
1280.471
1290.305
130.207
1300.132
1310.909
1320.264
1330.546
1340.342
1350.29
1360.0152
1370.442
1380.521
1390.393
140.357
1400.431
1410.104
1420.661
1430.453
1440.185
1450.572
1460.936
1470.161
1480.0614
1490.0333
150.15
1500.721
1510.493
1520.479
1530.0549
1540.927
1550.0197
1560.79
1570.308
1583.81296e-4
1590.299
160.31
1600.841
1610.167
1620.781
1630.452
1640.888
1650.522
1660.0142
1670.217
1680.837
1690.443
170.555
180.29
190.0555
20.756
200.436
210.0326
220.465
230.639
240.277
250.231
260.804
270.981
280.256
290.634
30.941
300.242
310.851
329.20699e-10
330.469
340.904
350.755
360.0645
370.433
380.286
390.367
40.286
400.0292
410.966
420.478
430.573
440.437
450.613
460.616
470.241
480.31
490.235
50.693
500.881
510.688
520.879
530.163
540.988
550.0999
560.783
570.942
580.115
590.772
60.891
600.175
610.416
620.306
630.629
640.309
650.881
660.299
670.459
680.924
690.693
70.0879
700.887
710.69
720.788
730.624
740.165
750.21
760.797
770.432
780.06
790.13
80.63
800.621
810.646
820.801
830.258
840.423
850.659
860.736
870.709
880.38
890.63
90.843
900.889
910.799
920.635
930.782
940.692
950.901
960.914
970.517
980.0581
990.00849



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11074


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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