FF:11558-120D1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005679 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008290;DRR009162;DRZ000587;DRZ001972;DRZ011937;DRZ013322 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000251 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor2.CNhs11911.11558-120D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11558-120D1 | |id=FF:11558-120D1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000251 | ||
|is_obsolete= | |||
|library_id=CNhs11911 | |||
|library_id_phase_based=2:CNhs11911 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11558 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11558 | |||
|name=Fibroblast - skin spinal muscular atrophy, donor2 | |name=Fibroblast - skin spinal muscular atrophy, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11911,LSID842,release014,COMPLETED | |profile_hcage=CNhs11911,LSID842,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0113903408809094,0,-0.153177573944904,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.0325369112793074,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.121655724261186,0,-0.0531565436149536,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.29443896415916,0,0,0.0650738225586148,-0.0969923612426051,0,0,0.0243120970480892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0325369112793074,0,0.0650738225586148,0,0,0,-0.0011631986951407,0.194146160965485,0,0,-0.000149901915054151,-0.0639779206162885,0,0.216583950963676,0,0,0.0736730197295891,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112483503085789,0,0,0,-0.126822161334561,-0.399252098418827,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0736730197295891,0.121655724261186,0,0,0,0.0650738225586148,0.216583950963676,0.171708370967295,0,0.216583950963676,0,0,-0.125523151024378,0,-0.145396318240746,-0.143515142523472,0,0,0.144073930947471,0,0.121655724261186,0,0,0,0,0,0.0650738225586148,0,0.481610579936264,0,0.121295819377981,0,0.121655724261186,0.216583950963676,0,0.0416146175697122,0.784970083874214,0,0.155043960199424,0.188909477419652,0,0,0,0,0.139883083882048,0,-0.120879483793741,0.0389355559377689,0.196102605913694,0.182787670628263,0.0659432274800042,0,0,0,0.179566578160376,0.441060647117814,0,0,0.284172560401203,0.0528057790542075,0,0,1.97321672057724,0,-0.171847405330735,0.0803891448642749,0,-0.022807175071303,0,0,0,0,0,0.0650738225586148,0,0,0,0,0,1.03720655113717,-0.205332872417783,0,0,0.25725373849702,0.0162581785988976,-0.132034467837648,0.0211538332851707,0.0384641238352985,0.0444280380599339,0.174116933658095,-0.0691244493538272,-0.281279071399212,0.0170644784148101,-0.302389727009913,0.0640460393093864,-0.0280451925157523,-0.323422222927567,0.296347060771817,0.419748727338981,0.0650738225586148,0.285944463746855,0.139849455636396,0.0312970700572841,-0.302267688731027,0,0.162376690991245,-0.0421695616043429,0,0,0.139075024484373,0.0138049464852515,0,-0.111700812802447,0.239409963810218,-0.08337664269138,0.232244878348402,0.0145999685970927,-0.0300969200970389,-0.163059541136175,0.314538249985909,0.0108743423331387,0.00279902469678936,0.460416002244997,0,0,0,0.0286485709994721,0.377793845745002,-0.287136272667417,0,0.0075801441105019,-0.00327043851875342,0.060827862130593,-0.100133127928363,-0.161922912805953,0,0,-0.284338266712252,0.121655724261186,0.0650738225586148,0,0,0,-0.0430526757555385,0.202925778543758,-0.0162716105918691,0,-0.0122643050644564,0.0322233948481825,-0.132941130096955,0,0.098510384832196,0,-0.112156331145136,-0.131654605396662,0,-0.0068952881665495,0.276724403274063,0.16369920417226,-0.127955841232577,0.235992137347335,0.0600013944310115,-0.0346356662769003,-0.000149901915054151,0.184446407431949,0,1.08510492914866,0.0183534641211227,-0.0011631986951407,0.202883420201715,0.0257486659655559,0.0205638568820495,0.0143977979520241,0.268129852661521,0,-0.0322424922699968,0,-0.36634309479226,-0.0268107155986294,-0.144850410421526,-0.148455311792818,0,-0.021271197589064,0.573292100260747,0,0.00114477224797471,0,0,-0.0287113590734531,-0.14304488070345,0.0049335230990865,0.251029225224938,0,0.175777377564706,0,0,0.176079799335039,-0.170402215205774,0,0.134027276314577,0.157907048195767,0.0224241360064084,0.100612877528742,0,0,0.133248395729956,0,0.360435958870614,-0.434219692850735,0,-0.0276477739850589,-0.253326341486756,0,-0.000330833972417746,0,0,0.290783029264558,0,0.126593138774385,0,0.0650738225586148,-0.217344385319516,0,0,0.0325369112793074,0.171708370967295,-0.0225299394309575,0.0650738225586148,0.034771956483071,0,0,0.002417258940271,0,0,-0.146466873790356,0.088915579926508,0,-0.0660029466318697,0,0,0,0,0.121655724261186,0,0,0,0.738838831516925,0.12434211270068,-0.12301741567642,0,0,0,0,0.297899633321136,-0.0815808378335376,0.121655724261186,-0.0667888839390169,0,0,0,0,0.171112748707809,0,0,0,0.060827862130593,0.0073433655049508,0.03796880828759,0,0,0,-0.27695440160179,0,0,0.0650738225586148,0.0537115412109206,-0.108148078717074,0,0.0368347318701324,0.333927362567982,0,0.0330397950923731,-0.0165080569882266,0,0.241849072750273,0.314156301740453,0.00678657502776336,0,0,0.128671550114246,0,0.0650738225586148,0.0767212692916639,0.0392855012955199,0,0.0116121353331905,0,0,0,0,0.0650738225586148,0,0.2294343977432,0.0325369112793074,0,0,0,0,0,0,0.25725373849702,0,0,0,0.186139234575528,0.20221490750065,0,0,0,0,0,0,0,0.516323549926708,-0.133309739172036,0.060827862130593,0,0.0325369112793074,0,0,0,0,0,-0.0814072577591086,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.105653761226219,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.278691300933948,0,0,0,0,0,0,0,-0.153177573944904,0,0,0,0,2.29803633270031,0,0,0,0.111787566174519,0,0.0113903408809094,0,0,0.25725373849702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164344950255631,0,0,0.00888373283413468,0.260298932324426,0.0360522833503708,0.056123460539703,-0.00456128564328662,0,0,0.0131504503276996,0,0,0,0,0,0,-0.031340424028527,0.0650738225586148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067258941763595,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0594958985212187,0,0,0,0,0,0,0.242338310975335,0.399047650234275,0.043535352520011,0,0,0,0.154471524525795,0.29443896415916,0,0,0.0650738225586148,0.104930983548394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0.0325369112793074,0.0325369112793074,0,0,0,0,0,0,0,0,0,0,0,0,0.171708370967295,0,0,0.060827862130593,0,0,0,0,0,0,-0.0340113632754165,0.0650738225586148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0650738225586148,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=148.7395 | |rna_weight_ug=148.7395 | ||
|sample_age=2 year old child | |sample_age=2 year old child | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.19633315879583e-218!GO:0005737;cytoplasm;2.29115721973013e-173!GO:0043226;organelle;2.64360790170936e-170!GO:0043229;intracellular organelle;7.73591642401888e-170!GO:0043231;intracellular membrane-bound organelle;5.16579543416724e-168!GO:0043227;membrane-bound organelle;9.62404874084711e-168!GO:0044444;cytoplasmic part;2.75808171204145e-125!GO:0044422;organelle part;7.27301059434069e-112!GO:0044446;intracellular organelle part;1.75067637199811e-110!GO:0032991;macromolecular complex;1.96030097931515e-80!GO:0044238;primary metabolic process;7.52881592445784e-80!GO:0044237;cellular metabolic process;9.68408785547168e-79!GO:0043170;macromolecule metabolic process;2.77284781521319e-76!GO:0030529;ribonucleoprotein complex;2.06698300368779e-74!GO:0005515;protein binding;1.11172376983083e-71!GO:0005634;nucleus;1.58262822566985e-63!GO:0003723;RNA binding;1.33557438977368e-62!GO:0043233;organelle lumen;2.29652246577504e-61!GO:0031974;membrane-enclosed lumen;2.29652246577504e-61!GO:0044428;nuclear part;2.32831407995597e-57!GO:0005739;mitochondrion;1.00846923302956e-53!GO:0019538;protein metabolic process;2.22516027679972e-47!GO:0016043;cellular component organization and biogenesis;1.24792468022417e-45!GO:0006412;translation;2.05124915636131e-45!GO:0005840;ribosome;3.64769391894263e-45!GO:0015031;protein transport;2.08655141718392e-43!GO:0033036;macromolecule localization;3.05775668257258e-43!GO:0031090;organelle membrane;4.4242543752118e-43!GO:0044260;cellular macromolecule metabolic process;5.24016852714622e-42!GO:0010467;gene expression;3.75178415663564e-41!GO:0044267;cellular protein metabolic process;8.74121472651823e-41!GO:0045184;establishment of protein localization;1.38495898154673e-40!GO:0003735;structural constituent of ribosome;1.81246745220072e-40!GO:0006396;RNA processing;2.91747510922145e-40!GO:0008104;protein localization;5.27596255828241e-40!GO:0043234;protein complex;1.94855626569067e-39!GO:0043283;biopolymer metabolic process;2.44463729124224e-39!GO:0031981;nuclear lumen;2.27592958085176e-37!GO:0005829;cytosol;2.57504690710167e-37!GO:0033279;ribosomal subunit;6.28362094418178e-36!GO:0044429;mitochondrial part;1.5296040503512e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.24790547791946e-35!GO:0016071;mRNA metabolic process;1.59978273107695e-34!GO:0009059;macromolecule biosynthetic process;2.37601046168996e-34!GO:0009058;biosynthetic process;5.16107170754788e-33!GO:0008380;RNA splicing;1.82289804303032e-32!GO:0044249;cellular biosynthetic process;1.82289804303032e-32!GO:0046907;intracellular transport;4.17043872833086e-31!GO:0031967;organelle envelope;2.62926632812592e-30!GO:0006397;mRNA processing;4.43007891826982e-30!GO:0031975;envelope;4.49936581900474e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49190275599052e-28!GO:0065003;macromolecular complex assembly;2.48717006968711e-28!GO:0006886;intracellular protein transport;7.80899513145558e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.70116248467517e-26!GO:0022607;cellular component assembly;5.07831058138852e-26!GO:0006996;organelle organization and biogenesis;1.24812123699642e-24!GO:0005654;nucleoplasm;2.18667562119125e-24!GO:0003676;nucleic acid binding;2.61448468803657e-23!GO:0005740;mitochondrial envelope;2.79484665622693e-23!GO:0043228;non-membrane-bound organelle;2.97511729226437e-22!GO:0043232;intracellular non-membrane-bound organelle;2.97511729226437e-22!GO:0031966;mitochondrial membrane;4.34922488395011e-22!GO:0005681;spliceosome;4.43232434964655e-22!GO:0044445;cytosolic part;8.71699118180387e-22!GO:0019866;organelle inner membrane;2.34753393505982e-21!GO:0044451;nucleoplasm part;2.72386534051836e-20!GO:0005743;mitochondrial inner membrane;2.93151356415043e-20!GO:0005783;endoplasmic reticulum;3.30904696456632e-19!GO:0006457;protein folding;4.28022782884301e-19!GO:0022618;protein-RNA complex assembly;4.29516543784744e-19!GO:0006119;oxidative phosphorylation;4.88760001868804e-19!GO:0051649;establishment of cellular localization;5.64802053229797e-19!GO:0051641;cellular localization;6.91766859367849e-19!GO:0016070;RNA metabolic process;1.17986863710108e-18!GO:0008134;transcription factor binding;1.45473323247297e-18!GO:0015935;small ribosomal subunit;1.5739744247619e-18!GO:0015934;large ribosomal subunit;2.63872960434628e-18!GO:0006259;DNA metabolic process;2.63872960434628e-18!GO:0016462;pyrophosphatase activity;3.24243147947987e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.37813889251129e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.78182920194753e-17!GO:0000166;nucleotide binding;5.38359421406694e-17!GO:0012505;endomembrane system;8.16104008724849e-17!GO:0017111;nucleoside-triphosphatase activity;1.00166405964226e-16!GO:0005794;Golgi apparatus;1.62877575673534e-16!GO:0044455;mitochondrial membrane part;1.83790836542202e-16!GO:0006512;ubiquitin cycle;2.70368227620307e-16!GO:0008135;translation factor activity, nucleic acid binding;2.75770291892992e-16!GO:0048770;pigment granule;6.65447927918746e-16!GO:0042470;melanosome;6.65447927918746e-16!GO:0048193;Golgi vesicle transport;1.91835211645618e-15!GO:0016874;ligase activity;3.60425894065337e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;4.62165594728768e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.90866398604188e-15!GO:0000502;proteasome complex (sensu Eukaryota);7.22979919653581e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.01117804344613e-14!GO:0019941;modification-dependent protein catabolic process;1.01117804344613e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.01117804344613e-14!GO:0044432;endoplasmic reticulum part;1.01117804344613e-14!GO:0044257;cellular protein catabolic process;1.37446881049349e-14!GO:0031980;mitochondrial lumen;1.43988767811954e-14!GO:0005759;mitochondrial matrix;1.43988767811954e-14!GO:0016192;vesicle-mediated transport;1.99815487098736e-14!GO:0043285;biopolymer catabolic process;2.97652521980857e-14!GO:0044265;cellular macromolecule catabolic process;3.35424425894126e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.58285233734401e-14!GO:0005730;nucleolus;9.85432645379709e-14!GO:0005746;mitochondrial respiratory chain;1.05469248244121e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.91954751400619e-13!GO:0006413;translational initiation;4.51198326601482e-13!GO:0003743;translation initiation factor activity;5.15103992971717e-13!GO:0006605;protein targeting;8.72754974376423e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.08780332906188e-12!GO:0003954;NADH dehydrogenase activity;2.08780332906188e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.08780332906188e-12!GO:0030163;protein catabolic process;2.13837041687882e-12!GO:0051186;cofactor metabolic process;2.17927283627386e-12!GO:0003712;transcription cofactor activity;2.62851665905582e-12!GO:0009057;macromolecule catabolic process;2.97684409165688e-12!GO:0051082;unfolded protein binding;3.08058658737993e-12!GO:0005793;ER-Golgi intermediate compartment;4.24942262078169e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;7.17488057650722e-12!GO:0000375;RNA splicing, via transesterification reactions;7.17488057650722e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.17488057650722e-12!GO:0044248;cellular catabolic process;1.20416465796287e-11!GO:0007049;cell cycle;1.44975017111747e-11!GO:0005761;mitochondrial ribosome;2.36761822032795e-11!GO:0000313;organellar ribosome;2.36761822032795e-11!GO:0017076;purine nucleotide binding;3.22544847635892e-11!GO:0050794;regulation of cellular process;3.22544847635892e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.5121366181282e-11!GO:0032553;ribonucleotide binding;3.71667984897805e-11!GO:0032555;purine ribonucleotide binding;3.71667984897805e-11!GO:0006974;response to DNA damage stimulus;4.57940644311131e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.80410758169466e-11!GO:0042773;ATP synthesis coupled electron transport;5.80410758169466e-11!GO:0016604;nuclear body;6.56081765941697e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.24485439829786e-11!GO:0045271;respiratory chain complex I;9.24485439829786e-11!GO:0005747;mitochondrial respiratory chain complex I;9.24485439829786e-11!GO:0006446;regulation of translational initiation;9.24485439829786e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.22343131499523e-10!GO:0008565;protein transporter activity;2.33369147422494e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.20232131959918e-10!GO:0043412;biopolymer modification;6.17584220778457e-10!GO:0005789;endoplasmic reticulum membrane;1.12649244315645e-09!GO:0016607;nuclear speck;1.76431329533654e-09!GO:0006732;coenzyme metabolic process;1.89986173285392e-09!GO:0009055;electron carrier activity;2.26140687995588e-09!GO:0006464;protein modification process;5.69053845276066e-09!GO:0008639;small protein conjugating enzyme activity;6.12174944131206e-09!GO:0006888;ER to Golgi vesicle-mediated transport;8.17351345021604e-09!GO:0004842;ubiquitin-protein ligase activity;1.02270469912639e-08!GO:0006366;transcription from RNA polymerase II promoter;1.15197315352108e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.1676421444051e-08!GO:0009259;ribonucleotide metabolic process;1.29720150208068e-08!GO:0019787;small conjugating protein ligase activity;1.58084369984163e-08!GO:0006163;purine nucleotide metabolic process;1.78148492214052e-08!GO:0006913;nucleocytoplasmic transport;1.78148492214052e-08!GO:0006281;DNA repair;1.80552030964959e-08!GO:0048475;coated membrane;1.82688751866876e-08!GO:0030117;membrane coat;1.82688751866876e-08!GO:0042254;ribosome biogenesis and assembly;1.86930840275663e-08!GO:0048523;negative regulation of cellular process;1.88140922887522e-08!GO:0009150;purine ribonucleotide metabolic process;1.96365849016722e-08!GO:0006461;protein complex assembly;1.98251154690125e-08!GO:0004386;helicase activity;2.13217078112604e-08!GO:0005524;ATP binding;2.90312238422137e-08!GO:0050789;regulation of biological process;3.05532280185774e-08!GO:0051169;nuclear transport;3.06421453002086e-08!GO:0005768;endosome;3.1065469546506e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.41768300624298e-08!GO:0016887;ATPase activity;3.50191083615804e-08!GO:0030120;vesicle coat;3.61327778940469e-08!GO:0030662;coated vesicle membrane;3.61327778940469e-08!GO:0008026;ATP-dependent helicase activity;3.63651885211245e-08!GO:0031965;nuclear membrane;3.70634279749124e-08!GO:0032559;adenyl ribonucleotide binding;3.83726124308496e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.8445689283991e-08!GO:0030554;adenyl nucleotide binding;4.04866325773665e-08!GO:0022402;cell cycle process;4.36566147818513e-08!GO:0009060;aerobic respiration;4.47529487899698e-08!GO:0006164;purine nucleotide biosynthetic process;4.53394567618583e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.82247937276497e-08!GO:0045333;cellular respiration;5.39139783281033e-08!GO:0012501;programmed cell death;5.8413736731069e-08!GO:0051246;regulation of protein metabolic process;6.30072294740612e-08!GO:0003924;GTPase activity;6.30072294740612e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.08961066902467e-08!GO:0009260;ribonucleotide biosynthetic process;7.37492857510562e-08!GO:0009719;response to endogenous stimulus;7.41887805651036e-08!GO:0005635;nuclear envelope;7.65978447988453e-08!GO:0043687;post-translational protein modification;9.3630218567335e-08!GO:0006323;DNA packaging;1.04104440565769e-07!GO:0042623;ATPase activity, coupled;1.09885342665555e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.10677794704075e-07!GO:0006915;apoptosis;1.26868196369091e-07!GO:0016491;oxidoreductase activity;1.6372816473285e-07!GO:0015986;ATP synthesis coupled proton transport;1.83428355235812e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.83428355235812e-07!GO:0051276;chromosome organization and biogenesis;1.83933238038199e-07!GO:0044453;nuclear membrane part;1.97531777128838e-07!GO:0016881;acid-amino acid ligase activity;1.97531777128838e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.98166646295221e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.98166646295221e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.21416833340151e-07!GO:0005788;endoplasmic reticulum lumen;2.40678982531774e-07!GO:0008219;cell death;2.8943001534657e-07!GO:0016265;death;2.8943001534657e-07!GO:0003713;transcription coactivator activity;3.40079418782256e-07!GO:0009141;nucleoside triphosphate metabolic process;3.65048316103336e-07!GO:0051187;cofactor catabolic process;4.23294798085239e-07!GO:0006099;tricarboxylic acid cycle;5.50539972665885e-07!GO:0046356;acetyl-CoA catabolic process;5.50539972665885e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.50539972665885e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.88601285703564e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.42080930752932e-07!GO:0004812;aminoacyl-tRNA ligase activity;6.42080930752932e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.42080930752932e-07!GO:0006399;tRNA metabolic process;6.93702163818427e-07!GO:0046034;ATP metabolic process;6.99321487299908e-07!GO:0048519;negative regulation of biological process;7.7480434040259e-07!GO:0043038;amino acid activation;7.94407961343256e-07!GO:0006418;tRNA aminoacylation for protein translation;7.94407961343256e-07!GO:0043039;tRNA aminoacylation;7.94407961343256e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.05194125999769e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.05194125999769e-07!GO:0009109;coenzyme catabolic process;8.49072177048021e-07!GO:0019829;cation-transporting ATPase activity;8.53344352469114e-07!GO:0009056;catabolic process;8.66589481543471e-07!GO:0000074;regulation of progression through cell cycle;9.02361580709685e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.06146775818142e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.06146775818142e-07!GO:0051726;regulation of cell cycle;9.18997179092317e-07!GO:0017038;protein import;1.04265188231839e-06!GO:0044431;Golgi apparatus part;1.17729974858488e-06!GO:0044440;endosomal part;1.34587185840038e-06!GO:0010008;endosome membrane;1.34587185840038e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.37737054748113e-06!GO:0045786;negative regulation of progression through cell cycle;1.60047719082876e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.23001898195977e-06!GO:0006754;ATP biosynthetic process;2.3718349168163e-06!GO:0006753;nucleoside phosphate metabolic process;2.3718349168163e-06!GO:0006084;acetyl-CoA metabolic process;2.72292335080047e-06!GO:0000245;spliceosome assembly;2.97533585099939e-06!GO:0005667;transcription factor complex;3.07101322405718e-06!GO:0005643;nuclear pore;3.68794871656245e-06!GO:0016568;chromatin modification;3.83613316108408e-06!GO:0065002;intracellular protein transport across a membrane;4.05807585640555e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.23038228305726e-06!GO:0043566;structure-specific DNA binding;4.49870263458581e-06!GO:0000278;mitotic cell cycle;4.81823741546699e-06!GO:0019222;regulation of metabolic process;5.49173249383768e-06!GO:0006403;RNA localization;5.67115961115445e-06!GO:0004298;threonine endopeptidase activity;5.71223398493849e-06!GO:0050657;nucleic acid transport;5.71239446330841e-06!GO:0051236;establishment of RNA localization;5.71239446330841e-06!GO:0050658;RNA transport;5.71239446330841e-06!GO:0005525;GTP binding;7.11727156327179e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.23966665552265e-06!GO:0003697;single-stranded DNA binding;7.36504913221374e-06!GO:0006613;cotranslational protein targeting to membrane;7.37810114424567e-06!GO:0045259;proton-transporting ATP synthase complex;7.74226725626127e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.97784692539067e-06!GO:0032446;protein modification by small protein conjugation;8.56628118704037e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.56628118704037e-06!GO:0009117;nucleotide metabolic process;9.62458442910328e-06!GO:0051188;cofactor biosynthetic process;1.04535594420182e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.15169647578988e-05!GO:0031252;leading edge;1.2197758897594e-05!GO:0031988;membrane-bound vesicle;1.23726858200302e-05!GO:0000151;ubiquitin ligase complex;1.25113924368328e-05!GO:0016563;transcription activator activity;1.26460054751891e-05!GO:0005770;late endosome;1.30856223343183e-05!GO:0065004;protein-DNA complex assembly;1.37687851496674e-05!GO:0008361;regulation of cell size;1.38573325245356e-05!GO:0016049;cell growth;1.42626922325035e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.45166609244946e-05!GO:0005798;Golgi-associated vesicle;1.49121340793559e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.51218455160646e-05!GO:0016567;protein ubiquitination;1.52146671707786e-05!GO:0051789;response to protein stimulus;1.56980040672353e-05!GO:0006986;response to unfolded protein;1.56980040672353e-05!GO:0016859;cis-trans isomerase activity;1.59737289286883e-05!GO:0016564;transcription repressor activity;1.72814958957593e-05!GO:0003714;transcription corepressor activity;1.83915682326583e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.13340125958634e-05!GO:0006260;DNA replication;2.21138725871565e-05!GO:0005773;vacuole;2.30330695497269e-05!GO:0031324;negative regulation of cellular metabolic process;2.36968575245838e-05!GO:0016853;isomerase activity;2.55158527705042e-05!GO:0046930;pore complex;2.76696690386916e-05!GO:0006364;rRNA processing;3.10565398837558e-05!GO:0006091;generation of precursor metabolites and energy;3.30740121902945e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.46868114697917e-05!GO:0019843;rRNA binding;3.50385173991537e-05!GO:0003724;RNA helicase activity;3.59409800507095e-05!GO:0031982;vesicle;3.91585931524978e-05!GO:0005694;chromosome;3.91585931524978e-05!GO:0016072;rRNA metabolic process;4.36721386922768e-05!GO:0042981;regulation of apoptosis;4.46607443822211e-05!GO:0043067;regulation of programmed cell death;4.6210336353739e-05!GO:0001558;regulation of cell growth;5.48045047041932e-05!GO:0031410;cytoplasmic vesicle;5.64572321379071e-05!GO:0032561;guanyl ribonucleotide binding;5.64572321379071e-05!GO:0019001;guanyl nucleotide binding;5.64572321379071e-05!GO:0006752;group transfer coenzyme metabolic process;5.76396440586768e-05!GO:0051170;nuclear import;6.30503692401594e-05!GO:0005769;early endosome;6.54328056955427e-05!GO:0016787;hydrolase activity;6.93269371386282e-05!GO:0065007;biological regulation;7.24581482677242e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;7.24581482677242e-05!GO:0000139;Golgi membrane;7.73841084005392e-05!GO:0006916;anti-apoptosis;7.96234103545618e-05!GO:0006612;protein targeting to membrane;7.96234103545618e-05!GO:0006333;chromatin assembly or disassembly;8.07309003085621e-05!GO:0005905;coated pit;8.20110391289018e-05!GO:0005813;centrosome;8.35041984875506e-05!GO:0043069;negative regulation of programmed cell death;8.35434800103756e-05!GO:0051028;mRNA transport;8.69792463475201e-05!GO:0015630;microtubule cytoskeleton;8.76700286908394e-05!GO:0009892;negative regulation of metabolic process;8.86664372699686e-05!GO:0006606;protein import into nucleus;9.39336381689755e-05!GO:0048522;positive regulation of cellular process;0.000112211998778603!GO:0043066;negative regulation of apoptosis;0.000121958427254881!GO:0008654;phospholipid biosynthetic process;0.000122183245043126!GO:0000323;lytic vacuole;0.000136625836442779!GO:0005764;lysosome;0.000136625836442779!GO:0007005;mitochondrion organization and biogenesis;0.000145346402943229!GO:0009108;coenzyme biosynthetic process;0.000145346402943229!GO:0005791;rough endoplasmic reticulum;0.000177531606426429!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000182356252590966!GO:0005762;mitochondrial large ribosomal subunit;0.000186207274182061!GO:0000315;organellar large ribosomal subunit;0.000186207274182061!GO:0043021;ribonucleoprotein binding;0.00018665499911286!GO:0043623;cellular protein complex assembly;0.000187583562102573!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000198233294423866!GO:0005815;microtubule organizing center;0.000213391570554154!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00021515154060357!GO:0030867;rough endoplasmic reticulum membrane;0.000233165508316972!GO:0030133;transport vesicle;0.00024397842281248!GO:0016779;nucleotidyltransferase activity;0.000269181773625712!GO:0030029;actin filament-based process;0.000279447045773617!GO:0045454;cell redox homeostasis;0.000289529956286452!GO:0051427;hormone receptor binding;0.000302516246347409!GO:0044427;chromosomal part;0.000315480164495745!GO:0000785;chromatin;0.00036734998910272!GO:0016481;negative regulation of transcription;0.000388749002644878!GO:0007010;cytoskeleton organization and biogenesis;0.000414494054101603!GO:0030663;COPI coated vesicle membrane;0.000430859804951358!GO:0030126;COPI vesicle coat;0.000430859804951358!GO:0004177;aminopeptidase activity;0.000433469612212799!GO:0007243;protein kinase cascade;0.000434023335745228!GO:0019899;enzyme binding;0.000485324934487193!GO:0033116;ER-Golgi intermediate compartment membrane;0.000487301978288318!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000498786493199641!GO:0016310;phosphorylation;0.000506448930535382!GO:0005048;signal sequence binding;0.00051949691679269!GO:0035257;nuclear hormone receptor binding;0.000575820266580762!GO:0008250;oligosaccharyl transferase complex;0.000576258055680905!GO:0007050;cell cycle arrest;0.000652884954054145!GO:0006891;intra-Golgi vesicle-mediated transport;0.00069681173682248!GO:0005885;Arp2/3 protein complex;0.000705355247272769!GO:0008186;RNA-dependent ATPase activity;0.000716354126227489!GO:0031323;regulation of cellular metabolic process;0.000717157370266502!GO:0016740;transferase activity;0.000805861006598206!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000837134196448478!GO:0006793;phosphorus metabolic process;0.000847553501786537!GO:0006796;phosphate metabolic process;0.000847553501786537!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000851220970059339!GO:0004576;oligosaccharyl transferase activity;0.000868204152207879!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000978331739971667!GO:0016044;membrane organization and biogenesis;0.00101717770319975!GO:0030118;clathrin coat;0.00105238877311197!GO:0030137;COPI-coated vesicle;0.00111486761343735!GO:0051920;peroxiredoxin activity;0.00112117248312606!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00122626958080386!GO:0019867;outer membrane;0.00123146215684071!GO:0031968;organelle outer membrane;0.0013984598508048!GO:0030027;lamellipodium;0.00140082749367029!GO:0008154;actin polymerization and/or depolymerization;0.00140339149553121!GO:0007264;small GTPase mediated signal transduction;0.00142701698227075!GO:0051128;regulation of cellular component organization and biogenesis;0.0014519462503788!GO:0016363;nuclear matrix;0.00146052869357636!GO:0051252;regulation of RNA metabolic process;0.00152009242002925!GO:0048500;signal recognition particle;0.00169190654697897!GO:0046914;transition metal ion binding;0.00169480537205245!GO:0000314;organellar small ribosomal subunit;0.00169801861980333!GO:0005763;mitochondrial small ribosomal subunit;0.00169801861980333!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00175521833180793!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00179340667710691!GO:0006414;translational elongation;0.00179631376292888!GO:0051168;nuclear export;0.00182265962641005!GO:0018196;peptidyl-asparagine modification;0.00185374289392921!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00185374289392921!GO:0006350;transcription;0.00189131214073524!GO:0003729;mRNA binding;0.00193578451172491!GO:0003899;DNA-directed RNA polymerase activity;0.00197005833741756!GO:0004004;ATP-dependent RNA helicase activity;0.00200517771015019!GO:0051329;interphase of mitotic cell cycle;0.00217317597155726!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00226533893902041!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00226533893902041!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00226533893902041!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00227103023755411!GO:0003690;double-stranded DNA binding;0.00228604089606021!GO:0040008;regulation of growth;0.0025210698894114!GO:0022403;cell cycle phase;0.00257640050609243!GO:0051301;cell division;0.00262498826088483!GO:0030658;transport vesicle membrane;0.00264744512945586!GO:0006383;transcription from RNA polymerase III promoter;0.00272547815719961!GO:0005741;mitochondrial outer membrane;0.00274414225418256!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0028321795988752!GO:0009967;positive regulation of signal transduction;0.00284793207581385!GO:0008047;enzyme activator activity;0.00287270068439545!GO:0031901;early endosome membrane;0.00289263154021913!GO:0008092;cytoskeletal protein binding;0.00293087898585901!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00301328160357748!GO:0016197;endosome transport;0.00309076797460718!GO:0003711;transcription elongation regulator activity;0.00309076797460718!GO:0010468;regulation of gene expression;0.00309076797460718!GO:0003746;translation elongation factor activity;0.00311842835517663!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00328678419194848!GO:0045047;protein targeting to ER;0.00328678419194848!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00337478720407461!GO:0005096;GTPase activator activity;0.00364060622774386!GO:0006334;nucleosome assembly;0.00364783348430895!GO:0030132;clathrin coat of coated pit;0.00373379203525742!GO:0046474;glycerophospholipid biosynthetic process;0.00381180873143974!GO:0030521;androgen receptor signaling pathway;0.00382896889237228!GO:0030134;ER to Golgi transport vesicle;0.00390226536058347!GO:0043284;biopolymer biosynthetic process;0.00397670672846938!GO:0008270;zinc ion binding;0.00402796189642177!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0040294472799088!GO:0048518;positive regulation of biological process;0.00405185799006407!GO:0006402;mRNA catabolic process;0.00405185799006407!GO:0048471;perinuclear region of cytoplasm;0.00408837201635367!GO:0009165;nucleotide biosynthetic process;0.00411765846215694!GO:0030127;COPII vesicle coat;0.00438590325253439!GO:0012507;ER to Golgi transport vesicle membrane;0.00438590325253439!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00443525150797071!GO:0051325;interphase;0.00449562814066472!GO:0000087;M phase of mitotic cell cycle;0.00454883327867902!GO:0003684;damaged DNA binding;0.00462436518808797!GO:0008312;7S RNA binding;0.00469485331053164!GO:0031072;heat shock protein binding;0.00513433458413417!GO:0006289;nucleotide-excision repair;0.00551056473964831!GO:0007067;mitosis;0.00554817079920412!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00582400601480809!GO:0030119;AP-type membrane coat adaptor complex;0.00589239484433919!GO:0006354;RNA elongation;0.0060733214833979!GO:0043681;protein import into mitochondrion;0.00615552230844666!GO:0030659;cytoplasmic vesicle membrane;0.00633531500844786!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00641320253743556!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00641320253743556!GO:0031497;chromatin assembly;0.00641440885293114!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0066078303448581!GO:0030041;actin filament polymerization;0.00665557444746302!GO:0045045;secretory pathway;0.00685809993272171!GO:0035258;steroid hormone receptor binding;0.00710445160973128!GO:0017166;vinculin binding;0.00710445160973128!GO:0050681;androgen receptor binding;0.00749875366431522!GO:0030660;Golgi-associated vesicle membrane;0.00763085849819306!GO:0043488;regulation of mRNA stability;0.00775693753819937!GO:0043487;regulation of RNA stability;0.00775693753819937!GO:0044262;cellular carbohydrate metabolic process;0.00778739969892404!GO:0008180;signalosome;0.00788029614330601!GO:0045892;negative regulation of transcription, DNA-dependent;0.0079708725810867!GO:0000059;protein import into nucleus, docking;0.00838730293900163!GO:0006509;membrane protein ectodomain proteolysis;0.0085902042132068!GO:0033619;membrane protein proteolysis;0.0085902042132068!GO:0045893;positive regulation of transcription, DNA-dependent;0.00875571373296091!GO:0046489;phosphoinositide biosynthetic process;0.00878911010595654!GO:0005869;dynactin complex;0.00912533316224605!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00953561811333206!GO:0051087;chaperone binding;0.00954899852286549!GO:0008234;cysteine-type peptidase activity;0.00957248915511475!GO:0006892;post-Golgi vesicle-mediated transport;0.0100612278740866!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0100911396383384!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0100911396383384!GO:0001527;microfibril;0.0101569635749754!GO:0045941;positive regulation of transcription;0.0103119097423813!GO:0042802;identical protein binding;0.0104417498565672!GO:0006352;transcription initiation;0.0104798202055349!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0105867061296121!GO:0051287;NAD binding;0.0107669735287537!GO:0030131;clathrin adaptor complex;0.0114202644536248!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0116264728484524!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0120134660955086!GO:0046467;membrane lipid biosynthetic process;0.0120372521403164!GO:0000209;protein polyubiquitination;0.012098847087265!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0123593509299707!GO:0033043;regulation of organelle organization and biogenesis;0.0123593509299707!GO:0005100;Rho GTPase activator activity;0.0124061666305705!GO:0000339;RNA cap binding;0.0125977137819791!GO:0006740;NADPH regeneration;0.0127002974798617!GO:0006098;pentose-phosphate shunt;0.0127002974798617!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0133154236479514!GO:0015399;primary active transmembrane transporter activity;0.0133154236479514!GO:0043433;negative regulation of transcription factor activity;0.014419306107082!GO:0008139;nuclear localization sequence binding;0.0144542950810533!GO:0000049;tRNA binding;0.0146860515136037!GO:0044433;cytoplasmic vesicle part;0.0146860515136037!GO:0016408;C-acyltransferase activity;0.0152737606794381!GO:0046483;heterocycle metabolic process;0.0153080427227163!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0153219145248578!GO:0001726;ruffle;0.0153624790936898!GO:0006417;regulation of translation;0.0157957077127829!GO:0031543;peptidyl-proline dioxygenase activity;0.0158644915630394!GO:0032984;macromolecular complex disassembly;0.0158690766218082!GO:0019798;procollagen-proline dioxygenase activity;0.0161412968791644!GO:0006979;response to oxidative stress;0.0168417958571387!GO:0050662;coenzyme binding;0.0169988236954204!GO:0048487;beta-tubulin binding;0.01700813925491!GO:0031902;late endosome membrane;0.0170589724951622!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0170589724951622!GO:0015992;proton transport;0.0180332677458504!GO:0030125;clathrin vesicle coat;0.0187732518028224!GO:0030665;clathrin coated vesicle membrane;0.0187732518028224!GO:0032774;RNA biosynthetic process;0.0191807215964271!GO:0030176;integral to endoplasmic reticulum membrane;0.019255101755535!GO:0030880;RNA polymerase complex;0.0193433287707256!GO:0031529;ruffle organization and biogenesis;0.0193433287707256!GO:0006497;protein amino acid lipidation;0.0193639702401169!GO:0030032;lamellipodium biogenesis;0.0195048654973754!GO:0006818;hydrogen transport;0.0196898247961958!GO:0006376;mRNA splice site selection;0.0196898247961958!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0196898247961958!GO:0006401;RNA catabolic process;0.0201588718650094!GO:0031272;regulation of pseudopodium formation;0.0201588718650094!GO:0031269;pseudopodium formation;0.0201588718650094!GO:0031344;regulation of cell projection organization and biogenesis;0.0201588718650094!GO:0031268;pseudopodium organization and biogenesis;0.0201588718650094!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0201588718650094!GO:0031274;positive regulation of pseudopodium formation;0.0201588718650094!GO:0003682;chromatin binding;0.0207787395477202!GO:0003678;DNA helicase activity;0.020967476061792!GO:0006626;protein targeting to mitochondrion;0.0210534500477375!GO:0031124;mRNA 3'-end processing;0.0210534500477375!GO:0006351;transcription, DNA-dependent;0.0210534500477375!GO:0005862;muscle thin filament tropomyosin;0.0210534500477375!GO:0012506;vesicle membrane;0.0212498113919595!GO:0006650;glycerophospholipid metabolic process;0.0214809846828167!GO:0005684;U2-dependent spliceosome;0.0216504730064546!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0216504730064546!GO:0005586;collagen type III;0.0220356281894743!GO:0035035;histone acetyltransferase binding;0.0222903384444133!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0223617318186278!GO:0015002;heme-copper terminal oxidase activity;0.0223617318186278!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0223617318186278!GO:0004129;cytochrome-c oxidase activity;0.0223617318186278!GO:0005801;cis-Golgi network;0.0233845269231984!GO:0005832;chaperonin-containing T-complex;0.0238106897636197!GO:0030100;regulation of endocytosis;0.0239909739541615!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0240374280246613!GO:0050811;GABA receptor binding;0.0240381537971464!GO:0043022;ribosome binding;0.0242191328596615!GO:0022408;negative regulation of cell-cell adhesion;0.0248520706843765!GO:0016251;general RNA polymerase II transcription factor activity;0.0248520706843765!GO:0030833;regulation of actin filament polymerization;0.0248520706843765!GO:0008097;5S rRNA binding;0.0251523959887103!GO:0033673;negative regulation of kinase activity;0.0254659379944178!GO:0006469;negative regulation of protein kinase activity;0.0254659379944178!GO:0022890;inorganic cation transmembrane transporter activity;0.0256112498033749!GO:0016272;prefoldin complex;0.025933398533465!GO:0006897;endocytosis;0.0264797649114454!GO:0010324;membrane invagination;0.0264797649114454!GO:0031625;ubiquitin protein ligase binding;0.0264902098296514!GO:0019752;carboxylic acid metabolic process;0.0266235878352741!GO:0007034;vacuolar transport;0.0268208135425004!GO:0051101;regulation of DNA binding;0.0268730311221169!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0272495672587568!GO:0015631;tubulin binding;0.0275502466051472!GO:0007040;lysosome organization and biogenesis;0.0277358275087987!GO:0043241;protein complex disassembly;0.0278557436418463!GO:0006693;prostaglandin metabolic process;0.0278557436418463!GO:0006692;prostanoid metabolic process;0.0278557436418463!GO:0008610;lipid biosynthetic process;0.0281079830263504!GO:0043624;cellular protein complex disassembly;0.0281704547313779!GO:0000082;G1/S transition of mitotic cell cycle;0.0282828105764648!GO:0006082;organic acid metabolic process;0.0286845765710374!GO:0008022;protein C-terminus binding;0.0290882109297789!GO:0000096;sulfur amino acid metabolic process;0.0291910337176324!GO:0007265;Ras protein signal transduction;0.0293744166428152!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0294918503851259!GO:0006261;DNA-dependent DNA replication;0.0297239866640087!GO:0044452;nucleolar part;0.0301318867897537!GO:0051539;4 iron, 4 sulfur cluster binding;0.0301539338561939!GO:0005520;insulin-like growth factor binding;0.0319426529887781!GO:0051540;metal cluster binding;0.0320295707358645!GO:0051536;iron-sulfur cluster binding;0.0320295707358645!GO:0005669;transcription factor TFIID complex;0.0323871438751467!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0323871438751467!GO:0006635;fatty acid beta-oxidation;0.0329575142872019!GO:0016860;intramolecular oxidoreductase activity;0.0333981708771449!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0341932697462972!GO:0000428;DNA-directed RNA polymerase complex;0.0341932697462972!GO:0007021;tubulin folding;0.0345748465993624!GO:0032940;secretion by cell;0.0346482690477129!GO:0003756;protein disulfide isomerase activity;0.034732297211305!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.034732297211305!GO:0006839;mitochondrial transport;0.034732297211305!GO:0042158;lipoprotein biosynthetic process;0.0351364591625605!GO:0006302;double-strand break repair;0.0357787592102574!GO:0031418;L-ascorbic acid binding;0.0365207373637069!GO:0008238;exopeptidase activity;0.0365697951655046!GO:0051348;negative regulation of transferase activity;0.0365697951655046!GO:0030518;steroid hormone receptor signaling pathway;0.0366932275841483!GO:0007030;Golgi organization and biogenesis;0.0367746570990819!GO:0001953;negative regulation of cell-matrix adhesion;0.0369127382677353!GO:0032535;regulation of cellular component size;0.0370873263391242!GO:0006984;ER-nuclear signaling pathway;0.0389059329993502!GO:0030384;phosphoinositide metabolic process;0.0395582597579365!GO:0009081;branched chain family amino acid metabolic process;0.0395849494633536!GO:0045449;regulation of transcription;0.040163611687066!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0404748304691499!GO:0007033;vacuole organization and biogenesis;0.0411877559007511!GO:0051098;regulation of binding;0.0417419799794654!GO:0008147;structural constituent of bone;0.0419619091872966!GO:0005583;fibrillar collagen;0.0425503272145898!GO:0031123;RNA 3'-end processing;0.0428521497217325!GO:0004003;ATP-dependent DNA helicase activity;0.0429289515790589!GO:0019783;small conjugating protein-specific protease activity;0.0433825837840709!GO:0065009;regulation of a molecular function;0.0434467548955029!GO:0006378;mRNA polyadenylation;0.0436087749617584!GO:0006595;polyamine metabolic process;0.0438328432876065!GO:0006405;RNA export from nucleus;0.0438779120250559!GO:0004674;protein serine/threonine kinase activity;0.0439835038891528!GO:0031371;ubiquitin conjugating enzyme complex;0.0440263803168771!GO:0004287;prolyl oligopeptidase activity;0.0442004854634354!GO:0009303;rRNA transcription;0.044545317686172!GO:0008320;protein transmembrane transporter activity;0.0447011611860035!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0448578998518101!GO:0030832;regulation of actin filament length;0.0452738129160874!GO:0043065;positive regulation of apoptosis;0.0454604131666306!GO:0007006;mitochondrial membrane organization and biogenesis;0.0457029683782843!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0461606971016838!GO:0045792;negative regulation of cell size;0.046174169942478!GO:0031326;regulation of cellular biosynthetic process;0.0464768376411144!GO:0005099;Ras GTPase activator activity;0.0467896136213619!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0469707549358983!GO:0009116;nucleoside metabolic process;0.0470318411927525!GO:0033559;unsaturated fatty acid metabolic process;0.0470318411927525!GO:0006636;unsaturated fatty acid biosynthetic process;0.0470318411927525!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0470318411927525!GO:0006118;electron transport;0.0478080231524881!GO:0030308;negative regulation of cell growth;0.0478973366592289!GO:0022884;macromolecule transmembrane transporter activity;0.0484530989759234!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0484530989759234!GO:0042168;heme metabolic process;0.0485876952520085!GO:0003702;RNA polymerase II transcription factor activity;0.0489776749890158!GO:0006739;NADP metabolic process;0.0490458081045672!GO:0005777;peroxisome;0.04912501961108!GO:0042579;microbody;0.04912501961108!GO:0042585;germinal vesicle;0.04912501961108!GO:0006778;porphyrin metabolic process;0.0494193741133309!GO:0033013;tetrapyrrole metabolic process;0.0494193741133309!GO:0048468;cell development;0.0496380714299058!GO:0004843;ubiquitin-specific protease activity;0.0497250492028402 | |||
|sample_id=11558 | |sample_id=11558 | ||
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun | |sample_note=Originally library704 tailing failed, the remaining sample is being rerun | ||
| Line 76: | Line 100: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=TAL1_TCF{3,4,12}:1.92393032837;ALX4:1.85528640475;ZNF238:1.76703389475;ESR1:1.63370851558;HMX1:1.52160290012;XBP1:1.44950003517;PAX1,9:1.29799003007;MYBL2:1.27969809584;GZF1:1.23713819978;EBF1:1.19098319137;STAT1,3:1.18708348445;KLF4:1.14571928961;ZIC1..3:1.09760464563;FOXO1,3,4:1.00943582603;GLI1..3:0.995863603482;ATF6:0.973695040943;MAZ:0.971892115828;TEAD1:0.963713262667;UFEwm:0.95881747714;TLX1..3_NFIC{dimer}:0.925517611664;HAND1,2:0.925087969013;GTF2I:0.907567938489;NFIX:0.886383191005;TP53:0.874273311702;TFCP2:0.815178106362;PATZ1:0.796841527261;RXR{A,B,G}:0.781691551194;MZF1:0.773639876375;NKX6-1,2:0.772762371888;HIF1A:0.770840529513;NKX2-2,8:0.757671943778;TFAP4:0.754578515652;EVI1:0.728744520967;EN1,2:0.727417967285;ZNF423:0.699132960614;ZNF148:0.68993883378;GCM1,2:0.683856086174;TFAP2{A,C}:0.654942209151;ALX1:0.641710882968;PAX5:0.615776948843;TBX4,5:0.595363800148;RREB1:0.571484382821;EP300:0.548680698162;SPZ1:0.540845594342;NANOG{mouse}:0.539812144269;HES1:0.527019427319;GTF2A1,2:0.518212091523;LHX3,4:0.496224330511;ADNP_IRX_SIX_ZHX:0.489677295279;PRDM1:0.474181051317;SOX5:0.466173395988;IRF1,2:0.462199665694;FOXL1:0.455414730943;HOX{A6,A7,B6,B7}:0.451708006066;ZBTB6:0.440819622515;RXRA_VDR{dimer}:0.435057197856;ELK1,4_GABP{A,B1}:0.427070282419;YY1:0.424460214753;SMAD1..7,9:0.418656756832;HOX{A5,B5}:0.406016820767;NRF1:0.383707861007;NFATC1..3:0.374266422986;MAFB:0.34001597916;HOX{A4,D4}:0.331349282078;TFAP2B:0.312381134712;XCPE1{core}:0.306502013404;NFE2L2:0.28760792857;MYFfamily:0.281333657252;GFI1B:0.272696486338;IKZF1:0.26186067395;PAX6:0.256497423942;SP1:0.255144767723;GFI1:0.237449483751;GATA4:0.231702672591;FOX{I1,J2}:0.224640074476;BPTF:0.221547956083;NKX3-1:0.218426715375;HMGA1,2:0.210604355046;MTF1:0.204449078031;SRF:0.194074936682;ZNF143:0.1643340344;HSF1,2:0.163316272991;ZNF384:0.15795926899;PDX1:0.154225329731;NR1H4:0.139654399662;SOX17:0.122763420568;POU5F1:0.116789804121;TLX2:0.113558045565;NR3C1:0.100570789872;TEF:0.0974641600195;HIC1:0.0851804046117;RFX1:0.0461654353646;AHR_ARNT_ARNT2:0.0407264148661;MED-1{core}:0.0249377822453;TOPORS:0.0129590311209;HLF:0.0129285732268;PAX4:-0.0137816097108;HOXA9_MEIS1:-0.0258605932115;NFE2:-0.0338321292429;NKX3-2:-0.0435121664508;MTE{core}:-0.0436103233988;STAT2,4,6:-0.0675771394269;EGR1..3:-0.0705034274224;FOXD3:-0.0724895803892;NHLH1,2:-0.0827492255194;PRRX1,2:-0.103188787027;REST:-0.105314035243;FOXM1:-0.109657599751;CEBPA,B_DDIT3:-0.116150719419;NFE2L1:-0.1527930611;FOXP3:-0.157060304165;AIRE:-0.159487668055;HNF4A_NR2F1,2:-0.164829541594;RFX2..5_RFXANK_RFXAP:-0.189476255114;PAX8:-0.190970362907;CDC5L:-0.19135739998;BACH2:-0.193997849839;FOXA2:-0.201814344834;CDX1,2,4:-0.203082849627;NKX2-1,4:-0.204170575644;IRF7:-0.204710734446;LEF1_TCF7_TCF7L1,2:-0.207817115762;HNF1A:-0.209422511843;RBPJ:-0.218521028943;ZFP161:-0.219204637705;MEF2{A,B,C,D}:-0.220829956134;ATF2:-0.244108613888;FOS_FOS{B,L1}_JUN{B,D}:-0.250844418753;TBP:-0.260021593551;ELF1,2,4:-0.293808177363;AR:-0.29967018152;HBP1_HMGB_SSRP1_UBTF:-0.30207486053;DBP:-0.309175867024;E2F1..5:-0.317393463243;FOSL2:-0.323870739433;NR6A1:-0.365286663723;FOX{D1,D2}:-0.369354365191;ESRRA:-0.371654840087;RUNX1..3:-0.393124534979;POU3F1..4:-0.407858923103;TGIF1:-0.410679506226;PBX1:-0.411324980122;NFIL3:-0.411677436608;BREu{core}:-0.414737848349;CUX2:-0.428354067589;FOXP1:-0.448132440423;NANOG:-0.49508466071;NKX2-3_NKX2-5:-0.503506471847;T:-0.505004914572;NFKB1_REL_RELA:-0.50508849001;SREBF1,2:-0.515311450936;SPI1:-0.526451562463;ATF5_CREB3:-0.534926969019;FOX{F1,F2,J1}:-0.56066619399;CREB1:-0.566493857674;ONECUT1,2:-0.571040300687;MYB:-0.583372424716;DMAP1_NCOR{1,2}_SMARC:-0.622709715255;bHLH_family:-0.630487009917;FOXN1:-0.630788889748;STAT5{A,B}:-0.641727474689;ETS1,2:-0.645315343929;TFDP1:-0.664576234566;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.673835899369;ARID5B:-0.679748321628;SOX2:-0.682369369503;SPIB:-0.741476153979;ZEB1:-0.749854213858;ATF4:-0.761140602203;JUN:-0.808488508611;PITX1..3:-0.813484359392;POU1F1:-0.835691210336;POU6F1:-0.851162313396;NR5A1,2:-0.863827597735;PAX3,7:-0.873039310261;SNAI1..3:-0.875274492911;NFY{A,B,C}:-0.875348767867;SOX{8,9,10}:-0.889190996121;GATA6:-0.892077880446;PAX2:-0.910838594545;CRX:-0.928781911884;VSX1,2:-0.995427427505;RORA:-1.0142877098;OCT4_SOX2{dimer}:-1.05015335095;FOXQ1:-1.07246854566;ZBTB16:-1.08392575957;LMO2:-1.14569929021;MYOD1:-1.16060670588;PPARG:-1.18261887753;POU2F1..3:-1.32587438498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.34605628399;IKZF2:-1.43269652593 | |top_motifs=TAL1_TCF{3,4,12}:1.92393032837;ALX4:1.85528640475;ZNF238:1.76703389475;ESR1:1.63370851558;HMX1:1.52160290012;XBP1:1.44950003517;PAX1,9:1.29799003007;MYBL2:1.27969809584;GZF1:1.23713819978;EBF1:1.19098319137;STAT1,3:1.18708348445;KLF4:1.14571928961;ZIC1..3:1.09760464563;FOXO1,3,4:1.00943582603;GLI1..3:0.995863603482;ATF6:0.973695040943;MAZ:0.971892115828;TEAD1:0.963713262667;UFEwm:0.95881747714;TLX1..3_NFIC{dimer}:0.925517611664;HAND1,2:0.925087969013;GTF2I:0.907567938489;NFIX:0.886383191005;TP53:0.874273311702;TFCP2:0.815178106362;PATZ1:0.796841527261;RXR{A,B,G}:0.781691551194;MZF1:0.773639876375;NKX6-1,2:0.772762371888;HIF1A:0.770840529513;NKX2-2,8:0.757671943778;TFAP4:0.754578515652;EVI1:0.728744520967;EN1,2:0.727417967285;ZNF423:0.699132960614;ZNF148:0.68993883378;GCM1,2:0.683856086174;TFAP2{A,C}:0.654942209151;ALX1:0.641710882968;PAX5:0.615776948843;TBX4,5:0.595363800148;RREB1:0.571484382821;EP300:0.548680698162;SPZ1:0.540845594342;NANOG{mouse}:0.539812144269;HES1:0.527019427319;GTF2A1,2:0.518212091523;LHX3,4:0.496224330511;ADNP_IRX_SIX_ZHX:0.489677295279;PRDM1:0.474181051317;SOX5:0.466173395988;IRF1,2:0.462199665694;FOXL1:0.455414730943;HOX{A6,A7,B6,B7}:0.451708006066;ZBTB6:0.440819622515;RXRA_VDR{dimer}:0.435057197856;ELK1,4_GABP{A,B1}:0.427070282419;YY1:0.424460214753;SMAD1..7,9:0.418656756832;HOX{A5,B5}:0.406016820767;NRF1:0.383707861007;NFATC1..3:0.374266422986;MAFB:0.34001597916;HOX{A4,D4}:0.331349282078;TFAP2B:0.312381134712;XCPE1{core}:0.306502013404;NFE2L2:0.28760792857;MYFfamily:0.281333657252;GFI1B:0.272696486338;IKZF1:0.26186067395;PAX6:0.256497423942;SP1:0.255144767723;GFI1:0.237449483751;GATA4:0.231702672591;FOX{I1,J2}:0.224640074476;BPTF:0.221547956083;NKX3-1:0.218426715375;HMGA1,2:0.210604355046;MTF1:0.204449078031;SRF:0.194074936682;ZNF143:0.1643340344;HSF1,2:0.163316272991;ZNF384:0.15795926899;PDX1:0.154225329731;NR1H4:0.139654399662;SOX17:0.122763420568;POU5F1:0.116789804121;TLX2:0.113558045565;NR3C1:0.100570789872;TEF:0.0974641600195;HIC1:0.0851804046117;RFX1:0.0461654353646;AHR_ARNT_ARNT2:0.0407264148661;MED-1{core}:0.0249377822453;TOPORS:0.0129590311209;HLF:0.0129285732268;PAX4:-0.0137816097108;HOXA9_MEIS1:-0.0258605932115;NFE2:-0.0338321292429;NKX3-2:-0.0435121664508;MTE{core}:-0.0436103233988;STAT2,4,6:-0.0675771394269;EGR1..3:-0.0705034274224;FOXD3:-0.0724895803892;NHLH1,2:-0.0827492255194;PRRX1,2:-0.103188787027;REST:-0.105314035243;FOXM1:-0.109657599751;CEBPA,B_DDIT3:-0.116150719419;NFE2L1:-0.1527930611;FOXP3:-0.157060304165;AIRE:-0.159487668055;HNF4A_NR2F1,2:-0.164829541594;RFX2..5_RFXANK_RFXAP:-0.189476255114;PAX8:-0.190970362907;CDC5L:-0.19135739998;BACH2:-0.193997849839;FOXA2:-0.201814344834;CDX1,2,4:-0.203082849627;NKX2-1,4:-0.204170575644;IRF7:-0.204710734446;LEF1_TCF7_TCF7L1,2:-0.207817115762;HNF1A:-0.209422511843;RBPJ:-0.218521028943;ZFP161:-0.219204637705;MEF2{A,B,C,D}:-0.220829956134;ATF2:-0.244108613888;FOS_FOS{B,L1}_JUN{B,D}:-0.250844418753;TBP:-0.260021593551;ELF1,2,4:-0.293808177363;AR:-0.29967018152;HBP1_HMGB_SSRP1_UBTF:-0.30207486053;DBP:-0.309175867024;E2F1..5:-0.317393463243;FOSL2:-0.323870739433;NR6A1:-0.365286663723;FOX{D1,D2}:-0.369354365191;ESRRA:-0.371654840087;RUNX1..3:-0.393124534979;POU3F1..4:-0.407858923103;TGIF1:-0.410679506226;PBX1:-0.411324980122;NFIL3:-0.411677436608;BREu{core}:-0.414737848349;CUX2:-0.428354067589;FOXP1:-0.448132440423;NANOG:-0.49508466071;NKX2-3_NKX2-5:-0.503506471847;T:-0.505004914572;NFKB1_REL_RELA:-0.50508849001;SREBF1,2:-0.515311450936;SPI1:-0.526451562463;ATF5_CREB3:-0.534926969019;FOX{F1,F2,J1}:-0.56066619399;CREB1:-0.566493857674;ONECUT1,2:-0.571040300687;MYB:-0.583372424716;DMAP1_NCOR{1,2}_SMARC:-0.622709715255;bHLH_family:-0.630487009917;FOXN1:-0.630788889748;STAT5{A,B}:-0.641727474689;ETS1,2:-0.645315343929;TFDP1:-0.664576234566;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.673835899369;ARID5B:-0.679748321628;SOX2:-0.682369369503;SPIB:-0.741476153979;ZEB1:-0.749854213858;ATF4:-0.761140602203;JUN:-0.808488508611;PITX1..3:-0.813484359392;POU1F1:-0.835691210336;POU6F1:-0.851162313396;NR5A1,2:-0.863827597735;PAX3,7:-0.873039310261;SNAI1..3:-0.875274492911;NFY{A,B,C}:-0.875348767867;SOX{8,9,10}:-0.889190996121;GATA6:-0.892077880446;PAX2:-0.910838594545;CRX:-0.928781911884;VSX1,2:-0.995427427505;RORA:-1.0142877098;OCT4_SOX2{dimer}:-1.05015335095;FOXQ1:-1.07246854566;ZBTB16:-1.08392575957;LMO2:-1.14569929021;MYOD1:-1.16060670588;PPARG:-1.18261887753;POU2F1..3:-1.32587438498;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.34605628399;IKZF2:-1.43269652593 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11558-120D1;search_select_hide=table117:FF:11558-120D1 | |||
}} | }} | ||
Latest revision as of 18:09, 4 June 2020
| Name: | Fibroblast - skin spinal muscular atrophy, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11911 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11911
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11911
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.096 |
| 10 | 10 | 0.331 |
| 100 | 100 | 0.766 |
| 101 | 101 | 0.432 |
| 102 | 102 | 0.0951 |
| 103 | 103 | 0.817 |
| 104 | 104 | 0.996 |
| 105 | 105 | 0.384 |
| 106 | 106 | 0.00914 |
| 107 | 107 | 0.215 |
| 108 | 108 | 0.64 |
| 109 | 109 | 0.225 |
| 11 | 11 | 0.408 |
| 110 | 110 | 0.674 |
| 111 | 111 | 0.0427 |
| 112 | 112 | 0.846 |
| 113 | 113 | 0.258 |
| 114 | 114 | 0.99 |
| 115 | 115 | 0.344 |
| 116 | 116 | 0.41 |
| 117 | 117 | 0.906 |
| 118 | 118 | 0.859 |
| 119 | 119 | 0.0301 |
| 12 | 12 | 0.275 |
| 120 | 120 | 0.961 |
| 121 | 121 | 0.475 |
| 122 | 122 | 0.0824 |
| 123 | 123 | 6.58233e-4 |
| 124 | 124 | 0.439 |
| 125 | 125 | 0.456 |
| 126 | 126 | 0.365 |
| 127 | 127 | 0.424 |
| 128 | 128 | 0.223 |
| 129 | 129 | 0.396 |
| 13 | 13 | 0.38 |
| 130 | 130 | 0.489 |
| 131 | 131 | 0.794 |
| 132 | 132 | 0.135 |
| 133 | 133 | 0.245 |
| 134 | 134 | 0.245 |
| 135 | 135 | 0.539 |
| 136 | 136 | 0.4 |
| 137 | 137 | 0.0233 |
| 138 | 138 | 0.304 |
| 139 | 139 | 0.0514 |
| 14 | 14 | 0.38 |
| 140 | 140 | 0.837 |
| 141 | 141 | 0.101 |
| 142 | 142 | 0.526 |
| 143 | 143 | 0.0571 |
| 144 | 144 | 0.175 |
| 145 | 145 | 0.376 |
| 146 | 146 | 0.77 |
| 147 | 147 | 0.304 |
| 148 | 148 | 0.0371 |
| 149 | 149 | 0.201 |
| 15 | 15 | 0.129 |
| 150 | 150 | 0.905 |
| 151 | 151 | 0.563 |
| 152 | 152 | 0.779 |
| 153 | 153 | 0.126 |
| 154 | 154 | 0.235 |
| 155 | 155 | 0.0729 |
| 156 | 156 | 0.711 |
| 157 | 157 | 0.328 |
| 158 | 158 | 0.00337 |
| 159 | 159 | 0.908 |
| 16 | 16 | 0.363 |
| 160 | 160 | 0.959 |
| 161 | 161 | 0.874 |
| 162 | 162 | 0.868 |
| 163 | 163 | 0.916 |
| 164 | 164 | 0.148 |
| 165 | 165 | 0.322 |
| 166 | 166 | 0.0347 |
| 167 | 167 | 0.454 |
| 168 | 168 | 0.441 |
| 169 | 169 | 0.231 |
| 17 | 17 | 0.595 |
| 18 | 18 | 0.93 |
| 19 | 19 | 0.0271 |
| 2 | 2 | 0.395 |
| 20 | 20 | 0.595 |
| 21 | 21 | 0.697 |
| 22 | 22 | 0.26 |
| 23 | 23 | 0.819 |
| 24 | 24 | 0.354 |
| 25 | 25 | 0.223 |
| 26 | 26 | 0.694 |
| 27 | 27 | 0.756 |
| 28 | 28 | 0.619 |
| 29 | 29 | 0.696 |
| 3 | 3 | 0.797 |
| 30 | 30 | 0.0848 |
| 31 | 31 | 0.816 |
| 32 | 32 | 1.1402e-10 |
| 33 | 33 | 0.374 |
| 34 | 34 | 0.688 |
| 35 | 35 | 0.426 |
| 36 | 36 | 0.0255 |
| 37 | 37 | 0.514 |
| 38 | 38 | 0.441 |
| 39 | 39 | 0.584 |
| 4 | 4 | 0.113 |
| 40 | 40 | 0.041 |
| 41 | 41 | 0.0194 |
| 42 | 42 | 0.6 |
| 43 | 43 | 0.391 |
| 44 | 44 | 0.969 |
| 45 | 45 | 0.692 |
| 46 | 46 | 0.601 |
| 47 | 47 | 0.255 |
| 48 | 48 | 0.444 |
| 49 | 49 | 0.179 |
| 5 | 5 | 0.578 |
| 50 | 50 | 0.607 |
| 51 | 51 | 0.983 |
| 52 | 52 | 0.478 |
| 53 | 53 | 0.447 |
| 54 | 54 | 0.8 |
| 55 | 55 | 0.204 |
| 56 | 56 | 0.732 |
| 57 | 57 | 0.382 |
| 58 | 58 | 0.118 |
| 59 | 59 | 0.727 |
| 6 | 6 | 0.795 |
| 60 | 60 | 0.121 |
| 61 | 61 | 0.424 |
| 62 | 62 | 0.239 |
| 63 | 63 | 0.752 |
| 64 | 64 | 0.457 |
| 65 | 65 | 0.669 |
| 66 | 66 | 0.102 |
| 67 | 67 | 0.3 |
| 68 | 68 | 0.981 |
| 69 | 69 | 0.709 |
| 7 | 7 | 0.107 |
| 70 | 70 | 0.8 |
| 71 | 71 | 0.198 |
| 72 | 72 | 0.686 |
| 73 | 73 | 0.767 |
| 74 | 74 | 0.792 |
| 75 | 75 | 0.879 |
| 76 | 76 | 0.538 |
| 77 | 77 | 0.46 |
| 78 | 78 | 0.0903 |
| 79 | 79 | 4.61789e-4 |
| 8 | 8 | 0.637 |
| 80 | 80 | 0.596 |
| 81 | 81 | 0.25 |
| 82 | 82 | 0.875 |
| 83 | 83 | 0.0749 |
| 84 | 84 | 0.214 |
| 85 | 85 | 0.714 |
| 86 | 86 | 0.694 |
| 87 | 87 | 0.789 |
| 88 | 88 | 0.284 |
| 89 | 89 | 0.245 |
| 9 | 9 | 0.734 |
| 90 | 90 | 0.294 |
| 91 | 91 | 0.476 |
| 92 | 92 | 0.784 |
| 93 | 93 | 0.583 |
| 94 | 94 | 0.98 |
| 95 | 95 | 0.0939 |
| 96 | 96 | 0.365 |
| 97 | 97 | 0.592 |
| 98 | 98 | 0.432 |
| 99 | 99 | 0.0435 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11911
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000251 human fibroblast - skin spinal muscular atrophy sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
