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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004872
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004872
|accession_numbers=CAGE;DRX008342;DRR009214;DRZ000639;DRZ002024;DRZ011989;DRZ013374
|accession_numbers_RNASeq=sRNA-Seq;DRX037002;DRR041368;DRZ007010
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0000119,UBERON:0003210
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000151,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000499,CL:0000327,CL:0000004,CL:0000134,CL:0000255,CL:0000708
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000708
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000091
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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ATA6;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.22!1.31!ZNF497;;chr12:125002827..125002855,-!p5@NCOR2!0.22!1.31!NCOR2;;chr4:146859887..146859921,-!p3@ZNF827!0.22!1.31!ZNF827;;chr3:170076223..170076242,+!p6@SKIL!0.22!0.87!SKIL;;chr1:170632285..170632309,+!p1@PRRX1!0.22!0.87!PRRX1;;chr17:38504601..38504634,+!p9@RARA!0.22!0.87!RARA;;chr18:53068911..53068935,-!p4@TCF4!0.22!0.87!TCF4;;chr19:19303794..19303805,+!p5@RFXANK!0.22!0.87!RFXANK;;chr9:99180597..99180614,-!p3@ZNF367!0.22!0.87!ZNF367;;chr1:202777535..202777556,-!p1@KDM5B!0.21!49.26!KDM5B;;chr20:44718538..44718612,-!p1@NCOA5!0.21!39.67!NCOA5;;chr1:8877692..8877732,-!p1@RERE!0.21!11.33!RERE;;chr2:60780753..60780800,-!p1@BCL11A!0.21!6.54!BCL11A;;chr7:26191809..26191890,+!p1@NFE2L3!0.21!6.54!NFE2L3;;chr17:47492252..47492265,-!p2@PHB!0.21!5.23!PHB;;chr4:38665883..38665922,+!p3@KLF3!0.21!4.80!KLF3;;chr2:27357446..27357475,-!p2@PREB!0.21!4.36!PREB;;chr14:73360799..73360817,-!p1@DPF3!0.21!4.36!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.21!3.92!TWIST2;;chr6:144289132..144289134,-!p3@PLAGL1!0.21!2.62!PLAGL1;;chr13:74708372..74708409,-!p4@KLF12!0.21!2.62!KLF12;;chr4:95128841..95128865,+!p4@SMARCAD1!0.21!2.18!SMARCAD1;;chr13:37494365..37494381,-!p1@SMAD9!0.21!1.74!SMAD9;;chrX:84499081..84499115,+!p2@ZNF711!0.21!1.31!ZNF711;;chr8:128752771..128752843,+!p9@MYC!0.21!1.31!MYC;;chr15:96869292..96869320,+!p15@NR2F2!0.21!1.31!NR2F2;;chr16:67063262..67063273,+!p7@CBFB!0.21!0.87!CBFB;;chr10:21823296..21823309,+!p8@MLLT10!0.21!0.87!MLLT10;;chr2:28616312..28616315,+!p8@FOSL2!0.21!0.87!FOSL2;;chr1:164528687..164528711,+!p6@PBX1!0.21!0.87!PBX1;;chrX:107019163..107019179,-!p7@TSC22D3!0.21!0.87!TSC22D3;;chr11:65686855..65686946,+!p1@DRAP1!0.20!108.12!DRAP1;;chr11:57103327..57103372,-!p1@SSRP1!0.20!67.14!SSRP1;;chr7:4721885..4721945,+!p1@FOXK1!0.20!43.60!FOXK1;;chr10:22292613..22292674,-!p1@DNAJC1!0.20!41.85!DNAJC1;;chr9:137218281..137218340,+!p1@RXRA!0.20!40.54!RXRA;;chr20:62601243..62601291,-!p1@ZNF512B!0.20!13.51!ZNF512B;;chr1:157108180..157108193,-!p2@ETV3!0.20!6.98!ETV3;;chr15:85144229..85144273,+!p1@ZSCAN2!0.20!6.98!ZSCAN2;;chr10:35484804..35484902,+!p2@CREM!0.20!4.80!CREM;;chr6:43337180..43337244,-!p1@ZNF318!0.20!4.80!ZNF318;;chr17:38498402..38498445,+!p3@RARA!0.20!4.36!RARA;;chr8:146012660..146012711,-!p1@ZNF34!0.20!3.92!ZNF34;;chr19:58838369..58838439,+!p1@ZSCAN22!0.20!3.92!ZSCAN22;;chr18:74207147..74207183,-!p1@ZNF516!0.20!3.49!ZNF516;;chr15:100106244..100106259,+!p2@MEF2A!0.20!2.62!MEF2A;;chr15:66994561..66994597,+!p2@SMAD6!0.20!2.62!SMAD6;;chr1:935398..935465,-!p2@HES4!0.20!2.18!HES4;;chr11:47270436..47270464,+!p2@NR1H3!0.20!2.18!NR1H3;;chr12:72058102..72058127,+!p7@THAP2!0.20!1.74!THAP2;;chr5:178368186..178368238,+!p1@ZNF454!0.20!1.74!ZNF454;;chr19:58570605..58570655,+!p1@ZNF135!0.20!1.74!ZNF135;;chr19:4066763..4066779,-!p5@ZBTB7A!0.20!1.31!ZBTB7A;;chr17:41622925..41622976,-!p3@ETV4!0.20!1.31!ETV4;;chr19:3366625..3366629,+!p4@NFIC!0.20!1.31!NFIC;;chr22:42269885..42269899,+!p4@SREBF2!0.20!1.31!SREBF2;;chr19:12175573..12175584,+!p3@ZNF844!0.20!0.87!ZNF844;;chr10:64134120..64134183,+!p1@ZNF365!0.20!0.87!ZNF365;;chr12:26278008..26278024,-!p4@BHLHE41!0.20!0.87!BHLHE41;;chr14:33408072..33408114,+!p2@NPAS3!0.20!0.87!NPAS3;;chr19:47425425..47425441,+!p2@ARHGAP35!0.20!0.87!ARHGAP35;;chr1:150849208..150849217,-!p3@ARNT!0.20!0.87!ARNT;;chr7:4721998..4722013,+!p3@FOXK1!0.20!0.87!FOXK1;;chr20:48807351..48807384,+!p1@CEBPB!0.19!143.87!CEBPB;;chr19:6424813..6424835,-!p1@KHSRP!0.19!87.19!KHSRP;;chr19:6279932..6280000,-!p1@MLLT1!0.19!34.88!MLLT1;;chr12:132628963..132629027,+!p1@NOC4L!0.19!19.62!NOC4L;;chr6:35310312..35310359,+!p1@PPARD!0.19!12.21!PPARD;;chr7:28220198..28220269,-!p2@JAZF1!0.19!11.77!JAZF1;;chr19:42724436..42724507,+!p1@ZNF526!0.19!10.90!ZNF526;;chr19:56879653..56879743,+!p1@ZNF542!0.19!9.59!ZNF542;;chr1:27022164..27022220,+!p2@ARID1A!0.19!9.59!ARID1A;;chr19:57106647..57106686,+!p1@ZNF71!0.19!8.72!ZNF71;;chr6:33285505..33285529,-!p1@ZBTB22!0.19!8.72!ZBTB22;;chr4:146859927..146860055,-!p1@ZNF827!0.19!7.85!ZNF827;;chr19:56652643..56652683,+!p1@ZNF444!0.19!6.98!ZNF444;;chr17:4981745..4981810,+!p1@ZFP3!0.19!6.10!ZFP3;;chr3:150126759..150126784,+!p2@TSC22D2!0.19!5.67!TSC22D2;;chr1:149871114..149871134,+!p3@BOLA1!0.19!4.80!BOLA1;;chr12:3068466..3068495,+!p3@TEAD4!0.19!2.18!TEAD4;;chr1:247171347..247171366,-!p2@ZNF695!0.19!1.74!ZNF695;;chr3:141121847..141121868,+!p5@ZBTB38!0.19!1.31!ZBTB38;;chr6:45390442..45390479,+!p8@RUNX2!0.19!1.31!RUNX2;;chr8:99956662..99956684,+!p1@OSR2!0.19!1.31!OSR2;;chr16:30569604..30569629,-!p3@ZNF764!0.19!1.31!ZNF764;;chr12:10875768..10875808,-!p3@CSDA!0.19!1.31!CSDA;;chr12:56583297..56583304,-!p4@SMARCC2!0.19!1.31!SMARCC2;;chr11:19263192..19263222,-!p2@E2F8!0.19!0.87!E2F8;;chr12:66218003..66218018,+!p9@HMGA2!0.19!0.87!HMGA2;;chr5:150284461..150284481,-!p4@ZNF300!0.19!0.87!ZNF300;;chr6:10415276..10415341,-!p2@TFAP2A!0.19!0.87!TFAP2A;;chr7:99679381..99679392,-!p4@ZNF3!0.19!0.87!ZNF3;;chr8:28748052..28748063,+!p4@HMBOX1!0.19!0.87!HMBOX1;;chr19:58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ATA6;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.22!1.31!ZNF497;;chr12:125002827..125002855,-!p5@NCOR2!0.22!1.31!NCOR2;;chr4:146859887..146859921,-!p3@ZNF827!0.22!1.31!ZNF827;;chr3:170076223..170076242,+!p6@SKIL!0.22!0.87!SKIL;;chr1:170632285..170632309,+!p1@PRRX1!0.22!0.87!PRRX1;;chr17:38504601..38504634,+!p9@RARA!0.22!0.87!RARA;;chr18:53068911..53068935,-!p4@TCF4!0.22!0.87!TCF4;;chr19:19303794..19303805,+!p5@RFXANK!0.22!0.87!RFXANK;;chr9:99180597..99180614,-!p3@ZNF367!0.22!0.87!ZNF367;;chr1:202777535..202777556,-!p1@KDM5B!0.21!49.26!KDM5B;;chr20:44718538..44718612,-!p1@NCOA5!0.21!39.67!NCOA5;;chr1:8877692..8877732,-!p1@RERE!0.21!11.33!RERE;;chr2:60780753..60780800,-!p1@BCL11A!0.21!6.54!BCL11A;;chr7:26191809..26191890,+!p1@NFE2L3!0.21!6.54!NFE2L3;;chr17:47492252..47492265,-!p2@PHB!0.21!5.23!PHB;;chr4:38665883..38665922,+!p3@KLF3!0.21!4.80!KLF3;;chr2:27357446..27357475,-!p2@PREB!0.21!4.36!PREB;;chr14:73360799..73360817,-!p1@DPF3!0.21!4.36!DPF3;;chr2:239756671..239756732,+!p1@TWIST2!0.21!3.92!TWIST2;;chr6:144289132..144289134,-!p3@PLAGL1!0.21!2.62!PLAGL1;;chr13:74708372..74708409,-!p4@KLF12!0.21!2.62!KLF12;;chr4:95128841..95128865,+!p4@SMARCAD1!0.21!2.18!SMARCAD1;;chr13:37494365..37494381,-!p1@SMAD9!0.21!1.74!SMAD9;;chrX:84499081..84499115,+!p2@ZNF711!0.21!1.31!ZNF711;;chr8:128752771..128752843,+!p9@MYC!0.21!1.31!MYC;;chr15:96869292..96869320,+!p15@NR2F2!0.21!1.31!NR2F2;;chr16:67063262..67063273,+!p7@CBFB!0.21!0.87!CBFB;;chr10:21823296..21823309,+!p8@MLLT10!0.21!0.87!MLLT10;;chr2:28616312..28616315,+!p8@FOSL2!0.21!0.87!FOSL2;;chr1:164528687..164528711,+!p6@PBX1!0.21!0.87!PBX1;;chrX:107019163..107019179,-!p7@TSC22D3!0.21!0.87!TSC22D3;;chr11:65686855..65686946,+!p1@DRAP1!0.20!108.12!DRAP1;;chr11:57103327..57103372,-!p1@SSRP1!0.20!67.14!SSRP1;;chr7:4721885..4721945,+!p1@FOXK1!0.20!43.60!FOXK1;;chr10:22292613..22292674,-!p1@DNAJC1!0.20!41.85!DNAJC1;;chr9:137218281..137218340,+!p1@RXRA!0.20!40.54!RXRA;;chr20:62601243..62601291,-!p1@ZNF512B!0.20!13.51!ZNF512B;;chr1:157108180..157108193,-!p2@ETV3!0.20!6.98!ETV3;;chr15:85144229..85144273,+!p1@ZSCAN2!0.20!6.98!ZSCAN2;;chr10:35484804..35484902,+!p2@CREM!0.20!4.80!CREM;;chr6:43337180..43337244,-!p1@ZNF318!0.20!4.80!ZNF318;;chr17:38498402..38498445,+!p3@RARA!0.20!4.36!RARA;;chr8:146012660..146012711,-!p1@ZNF34!0.20!3.92!ZNF34;;chr19:58838369..58838439,+!p1@ZSCAN22!0.20!3.92!ZSCAN22;;chr18:74207147..74207183,-!p1@ZNF516!0.20!3.49!ZNF516;;chr15:100106244..100106259,+!p2@MEF2A!0.20!2.62!MEF2A;;chr15:66994561..66994597,+!p2@SMAD6!0.20!2.62!SMAD6;;chr1:935398..935465,-!p2@HES4!0.20!2.18!HES4;;chr11:47270436..47270464,+!p2@NR1H3!0.20!2.18!NR1H3;;chr12:72058102..72058127,+!p7@THAP2!0.20!1.74!THAP2;;chr5:178368186..178368238,+!p1@ZNF454!0.20!1.74!ZNF454;;chr19:58570605..58570655,+!p1@ZNF135!0.20!1.74!ZNF135;;chr19:4066763..4066779,-!p5@ZBTB7A!0.20!1.31!ZBTB7A;;chr17:41622925..41622976,-!p3@ETV4!0.20!1.31!ETV4;;chr19:3366625..3366629,+!p4@NFIC!0.20!1.31!NFIC;;chr22:42269885..42269899,+!p4@SREBF2!0.20!1.31!SREBF2;;chr19:12175573..12175584,+!p3@ZNF844!0.20!0.87!ZNF844;;chr10:64134120..64134183,+!p1@ZNF365!0.20!0.87!ZNF365;;chr12:26278008..26278024,-!p4@BHLHE41!0.20!0.87!BHLHE41;;chr14:33408072..33408114,+!p2@NPAS3!0.20!0.87!NPAS3;;chr19:47425425..47425441,+!p2@ARHGAP35!0.20!0.87!ARHGAP35;;chr1:150849208..150849217,-!p3@ARNT!0.20!0.87!ARNT;;chr7:4721998..4722013,+!p3@FOXK1!0.20!0.87!FOXK1;;chr20:48807351..48807384,+!p1@CEBPB!0.19!143.87!CEBPB;;chr19:6424813..6424835,-!p1@KHSRP!0.19!87.19!KHSRP;;chr19:6279932..6280000,-!p1@MLLT1!0.19!34.88!MLLT1;;chr12:132628963..132629027,+!p1@NOC4L!0.19!19.62!NOC4L;;chr6:35310312..35310359,+!p1@PPARD!0.19!12.21!PPARD;;chr7:28220198..28220269,-!p2@JAZF1!0.19!11.77!JAZF1;;chr19:42724436..42724507,+!p1@ZNF526!0.19!10.90!ZNF526;;chr19:56879653..56879743,+!p1@ZNF542!0.19!9.59!ZNF542;;chr1:27022164..27022220,+!p2@ARID1A!0.19!9.59!ARID1A;;chr19:57106647..57106686,+!p1@ZNF71!0.19!8.72!ZNF71;;chr6:33285505..33285529,-!p1@ZBTB22!0.19!8.72!ZBTB22;;chr4:146859927..146860055,-!p1@ZNF827!0.19!7.85!ZNF827;;chr19:56652643..56652683,+!p1@ZNF444!0.19!6.98!ZNF444;;chr17:4981745..4981810,+!p1@ZFP3!0.19!6.10!ZFP3;;chr3:150126759..150126784,+!p2@TSC22D2!0.19!5.67!TSC22D2;;chr1:149871114..149871134,+!p3@BOLA1!0.19!4.80!BOLA1;;chr12:3068466..3068495,+!p3@TEAD4!0.19!2.18!TEAD4;;chr1:247171347..247171366,-!p2@ZNF695!0.19!1.74!ZNF695;;chr3:141121847..141121868,+!p5@ZBTB38!0.19!1.31!ZBTB38;;chr6:45390442..45390479,+!p8@RUNX2!0.19!1.31!RUNX2;;chr8:99956662..99956684,+!p1@OSR2!0.19!1.31!OSR2;;chr16:30569604..30569629,-!p3@ZNF764!0.19!1.31!ZNF764;;chr12:10875768..10875808,-!p3@CSDA!0.19!1.31!CSDA;;chr12:56583297..56583304,-!p4@SMARCC2!0.19!1.31!SMARCC2;;chr11:19263192..19263222,-!p2@E2F8!0.19!0.87!E2F8;;chr12:66218003..66218018,+!p9@HMGA2!0.19!0.87!HMGA2;;chr5:150284461..150284481,-!p4@ZNF300!0.19!0.87!ZNF300;;chr6:10415276..10415341,-!p2@TFAP2A!0.19!0.87!TFAP2A;;chr7:99679381..99679392,-!p4@ZNF3!0.19!0.87!ZNF3;;chr8:28748052..28748063,+!p4@HMBOX1!0.19!0.87!HMBOX1;;chr19:58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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000708
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Meningeal%2520Cells%252c%2520donor2.CNhs12080.11573-120E7.hg38.nobarcode.ctss.bed.gz
|id=FF:11573-120E7
|id=FF:11573-120E7
|is_a=EFO:0002091;;FF:0000091
|is_a=EFO:0002091;;FF:0000091
|is_obsolete=
|is_obsolete=
|library_id=CNhs12080
|library_id_phase_based=2:CNhs12080
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11573
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.ATGTCA.11573
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11573
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.ATGTCA.11573
|name=Meningeal Cells, donor2
|name=Meningeal Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12080,LSID838,release011,COMPLETED
|profile_hcage=CNhs12080,LSID838,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10002,,,
|profile_srnaseq=SRhi10002,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_catalog_number=SC1405
|rna_catalog_number=SC1405
Line 55: Line 80:
|rna_rin=9.6
|rna_rin=9.6
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=120E7
|rna_tube_id=1.20E+09
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|rna_weight_ug=10
|rnaseq_library_id=SRhi10002.ATGTCA
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=lot:0024
|sample_cell_catalog=lot:0024
|sample_cell_line=
|sample_cell_line=
Line 79: Line 106:
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|top_motifs=EBF1:1.45338721434;HOX{A5,B5}:1.36479817329;PAX1,9:1.34619278915;ESRRA:1.26674063126;TAL1_TCF{3,4,12}:1.2076944086;IKZF1:1.08325175267;TFAP4:1.05228153907;NR3C1:0.981081623688;ZIC1..3:0.931241174147;TFCP2:0.877687791549;GZF1:0.857749821074;GFI1:0.810970515509;LEF1_TCF7_TCF7L1,2:0.787790876104;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.785545039583;TLX1..3_NFIC{dimer}:0.782414018992;TEAD1:0.699857279592;EN1,2:0.682611578401;ZNF238:0.674042886045;NR5A1,2:0.581517481822;TFDP1:0.578398321319;SPZ1:0.574423391432;HNF4A_NR2F1,2:0.566636327029;NFY{A,B,C}:0.545695606818;SOX5:0.538868138434;XCPE1{core}:0.499071166225;PRRX1,2:0.479584375333;MAZ:0.450585544335;TFAP2{A,C}:0.446966562715;ONECUT1,2:0.446828786053;KLF4:0.445852869683;RXR{A,B,G}:0.441859618642;HIC1:0.438441777786;GTF2A1,2:0.435482884251;ZNF423:0.409175189963;bHLH_family:0.407436517947;AIRE:0.404437525506;SOX17:0.395564428217;HSF1,2:0.394618713503;TFAP2B:0.390818893915;MZF1:0.39070507753;ZNF148:0.387382284528;LHX3,4:0.380635607504;SRF:0.380493963766;GTF2I:0.379708593573;NHLH1,2:0.37626013128;PATZ1:0.360666139875;POU1F1:0.329828291645;STAT5{A,B}:0.328072968961;GFI1B:0.323598909202;CRX:0.288718762484;MYB:0.265812486799;XBP1:0.243021970375;RXRA_VDR{dimer}:0.240117992892;TOPORS:0.232046728745;NFIX:0.217345114778;AR:0.215320981609;ATF6:0.212272399917;E2F1..5:0.198735364793;HAND1,2:0.188992386581;PAX8:0.184542856695;SP1:0.182816653877;TBP:0.179252146521;ZNF143:0.16889026319;PBX1:0.158438337813;NFE2L2:0.15779227243;MTE{core}:0.156978024839;ZBTB6:0.153028434957;NANOG{mouse}:0.152246499882;CUX2:0.144072903218;MEF2{A,B,C,D}:0.142004815541;FOXM1:0.139158352759;MED-1{core}:0.127847370986;MYBL2:0.125651441863;T:0.12381430323;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.120419309422;TP53:0.113355634808;NRF1:0.105115759097;MTF1:0.104719714442;NFATC1..3:0.0997484748645;NR6A1:0.0985143541887;YY1:0.0967368643784;HES1:0.0895108594644;GATA6:0.0891110595671;FOXP3:0.0834549049893;MAFB:0.0790913818946;NANOG:0.0640164288516;FOSL2:0.0550634188287;SOX{8,9,10}:0.0544476080652;HLF:0.0534445932984;FOXA2:0.0438380571955;UFEwm:0.0353086778919;PAX5:0.0321579026276;PAX3,7:0.00505470283752;PAX4:-0.0294738279549;FOXQ1:-0.032089521814;HNF1A:-0.0502307119135;ALX4:-0.0646685416289;RORA:-0.0654088711963;SOX2:-0.0665276921279;AHR_ARNT_ARNT2:-0.0765241447905;GCM1,2:-0.0836487247232;RFX1:-0.0839556957374;NFE2L1:-0.0890477816502;ZNF384:-0.0943406328378;NR1H4:-0.0964714696822;VSX1,2:-0.101913652657;RREB1:-0.104128738107;TBX4,5:-0.105956604053;ESR1:-0.10733143349;RBPJ:-0.107731637976;NKX6-1,2:-0.107927981447;FOXO1,3,4:-0.110945820157;CEBPA,B_DDIT3:-0.111691154068;OCT4_SOX2{dimer}:-0.115398421208;PAX6:-0.116158918783;PRDM1:-0.120734133926;GLI1..3:-0.120763730103;ETS1,2:-0.130275482502;ZFP161:-0.131991246144;FOS_FOS{B,L1}_JUN{B,D}:-0.135794757485;BACH2:-0.138839021007;NFIL3:-0.154901546918;REST:-0.156197660445;NKX3-1:-0.164277919409;EGR1..3:-0.168938336532;PPARG:-0.20134575444;CDC5L:-0.202438514945;ELF1,2,4:-0.211795717787;RUNX1..3:-0.212239884768;HOX{A4,D4}:-0.215918916645;STAT1,3:-0.220944953113;BREu{core}:-0.229230483149;STAT2,4,6:-0.2483557509;HBP1_HMGB_SSRP1_UBTF:-0.250104372078;HOX{A6,A7,B6,B7}:-0.265638834256;NKX2-2,8:-0.269759989375;JUN:-0.280431844689;NKX2-1,4:-0.281990484275;FOXD3:-0.287272737376;MYFfamily:-0.289225517051;NFE2:-0.28963884911;ELK1,4_GABP{A,B1}:-0.314926254244;PAX2:-0.329112461944;HOXA9_MEIS1:-0.331358949405;FOX{I1,J2}:-0.332229395388;ADNP_IRX_SIX_ZHX:-0.334464264336;NFKB1_REL_RELA:-0.338020459469;GATA4:-0.339509860995;TEF:-0.339520069645;NKX2-3_NKX2-5:-0.361643327572;SPIB:-0.378828306049;POU3F1..4:-0.390772855065;TGIF1:-0.4007063836;SMAD1..7,9:-0.432984484524;HMGA1,2:-0.436003254103;POU5F1:-0.455768639031;ATF2:-0.497697146804;HIF1A:-0.499272461612;POU2F1..3:-0.501848048414;HMX1:-0.510557053206;BPTF:-0.515606500898;SNAI1..3:-0.536620632995;IRF7:-0.539059121229;LMO2:-0.540836874082;MYOD1:-0.542246162218;IRF1,2:-0.557207481387;EVI1:-0.589284389382;SPI1:-0.59967346907;TLX2:-0.638726391439;ARID5B:-0.639139941715;POU6F1:-0.670197638893;FOX{F1,F2,J1}:-0.675345835898;NKX3-2:-0.677823315902;SREBF1,2:-0.692540851912;PDX1:-0.735495915107;EP300:-0.73614378915;ZEB1:-0.749942574152;DMAP1_NCOR{1,2}_SMARC:-0.764075751557;CREB1:-0.764534734018;FOXL1:-0.76665571058;FOX{D1,D2}:-0.784098362257;ZBTB16:-0.799171447748;PITX1..3:-0.829734423668;FOXP1:-0.891522657679;ATF4:-0.924353867887;RFX2..5_RFXANK_RFXAP:-0.926197207212;ATF5_CREB3:-0.931539854957;ALX1:-0.947267518126;CDX1,2,4:-0.995376421472;DBP:-1.0193969337;FOXN1:-1.1833959934;IKZF2:-1.25965743887
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11573-120E7;search_select_hide=table117:FF:11573-120E7
}}
}}

Latest revision as of 18:10, 4 June 2020

Name:Meningeal Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12080
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemeninges
dev stageNA
sexNA
ageNA
cell typemeningeal cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC1405
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004872
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12080 CAGE DRX008342 DRR009214
Accession ID Hg19

Library idBAMCTSS
CNhs12080 DRZ000639 DRZ002024
Accession ID Hg38

Library idBAMCTSS
CNhs12080 DRZ011989 DRZ013374
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004872
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10002.ATGTCA sRNA-Seq DRX037002 DRR041368
Accession ID Hg19

Library idBAMCTSS
SRhi10002.ATGTCA DRZ007010


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.147
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.128
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.438
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0305
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.272
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.341
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0915
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.191
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.214
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.00465
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0231
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.35
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.363
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.157
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.409
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.157
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.272
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.396
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12080

Jaspar motifP-value
MA0002.20.493
MA0003.10.629
MA0004.10.414
MA0006.10.298
MA0007.10.165
MA0009.10.242
MA0014.10.294
MA0017.10.715
MA0018.22.89333e-5
MA0019.10.11
MA0024.10.307
MA0025.10.126
MA0027.10.539
MA0028.10.353
MA0029.10.953
MA0030.10.067
MA0031.10.062
MA0035.20.202
MA0038.10.0026
MA0039.20.719
MA0040.10.129
MA0041.10.162
MA0042.10.502
MA0043.10.0128
MA0046.10.205
MA0047.20.96
MA0048.10.283
MA0050.18.2498e-4
MA0051.10.013
MA0052.10.843
MA0055.10.0351
MA0057.10.391
MA0058.10.761
MA0059.10.874
MA0060.11.17154e-6
MA0061.10.0246
MA0062.25.11586e-4
MA0065.20.61
MA0066.10.817
MA0067.11.06363e-4
MA0068.10.272
MA0069.10.62
MA0070.10.0594
MA0071.10.377
MA0072.10.979
MA0073.10.981
MA0074.10.868
MA0076.10.103
MA0077.10.794
MA0078.10.837
MA0079.20.714
MA0080.24.44895e-6
MA0081.10.172
MA0083.10.013
MA0084.10.822
MA0087.10.615
MA0088.10.944
MA0090.10.00109
MA0091.10.108
MA0092.10.722
MA0093.10.476
MA0099.20.565
MA0100.10.748
MA0101.10.113
MA0102.20.00312
MA0103.10.032
MA0104.20.696
MA0105.10.0484
MA0106.10.797
MA0107.10.0671
MA0108.21.93066e-5
MA0111.10.299
MA0112.20.404
MA0113.10.0151
MA0114.10.846
MA0115.10.74
MA0116.10.12
MA0117.10.163
MA0119.10.862
MA0122.10.439
MA0124.10.574
MA0125.10.354
MA0131.10.897
MA0135.10.101
MA0136.12.21654e-8
MA0137.20.872
MA0138.20.757
MA0139.10.969
MA0140.10.2
MA0141.10.0476
MA0142.10.383
MA0143.10.834
MA0144.10.82
MA0145.10.845
MA0146.10.0724
MA0147.10.954
MA0148.10.653
MA0149.10.14
MA0150.10.0131
MA0152.10.221
MA0153.10.826
MA0154.10.704
MA0155.10.0479
MA0156.18.10114e-4
MA0157.10.62
MA0159.10.693
MA0160.10.339
MA0162.10.0682
MA0163.10.429
MA0164.10.471
MA0258.10.144
MA0259.10.78



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12080

Novel motifP-value
10.221
100.00318
1000.335
1010.204
1020.0298
1030.342
1040.574
1050.126
1060.996
1070.457
1080.825
1090.966
110.943
1100.272
1110.297
1120.498
1130.101
1140.633
1150.501
1160.305
1170.174
1180.0433
1190.226
120.404
1200.457
1210.925
1220.446
1230.00283
1240.397
1250.545
1260.824
1270.603
1280.354
1290.611
130.272
1300.134
1310.886
1320.679
1330.899
1340.023
1350.48
1360.735
1370.00376
1380.094
1390.181
140.322
1400.547
1410.55
1420.979
1430.322
1440.568
1450.698
1460.0719
1470.311
1480.165
1490.451
150.52
1500.0594
1510.328
1520.833
1530.312
1540.00469
1550.0121
1560.828
1570.69
1580.0975
1590.877
160.476
1600.456
1610.392
1620.178
1630.752
1640.138
1650.121
1660.78
1670.0619
1680.586
1690.218
170.536
180.126
190.248
20.195
200.246
210.397
220.172
230.947
240.284
250.782
260.82
270.182
280.0976
290.397
30.5
300.0436
310.713
329.33444e-6
330.727
340.129
350.369
360.112
370.319
380.477
390.233
40.84
400.609
410.716
420.979
430.598
440.559
450.321
460.79
470.723
480.818
490.574
50.545
500.642
510.803
520.968
530.264
540.923
550.44
560.669
570.666
580.125
590.342
60.343
600.652
610.896
620.183
630.503
640.451
650.0876
660.0407
670.928
680.97
690.413
70.901
700.376
710.234
720.223
730.797
740.573
750.516
760.0962
770.306
780.228
790.0468
80.236
800.122
810.0974
820.203
830.942
840.0507
850.71
860.162
870.901
880.57
890.252
90.216
900.216
910.313
920.755
930.47
940.929
950.481
960.171
970.389
980.923
999.39591e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12080


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000708 (leptomeningeal cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0000119 (cell layer)
0003210 (blood-cerebrospinal fluid barrier)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000091 (human leptomeningeal cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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