FF:11603-120I1: Difference between revisions

Latest revision as of 18:11, 4 June 2020

Name:	Hepatocyte, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12349
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	NA
age	NA
cell type	hepatocyte
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC5205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005065

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12349		CAGE		DRX008308		DRR009180

Accession ID Hg19

Library id		BAM		CTSS
CNhs12349		DRZ000605		DRZ001990

Accession ID Hg38

Library id		BAM		CTSS
CNhs12349		DRZ011955		DRZ013340

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005065

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10066.AGTTCC		sRNA-Seq		DRX037267		DRR041633

Accession ID Hg19

Library id		BAM		CTSS
SRhi10066.AGTTCC		DRZ007275

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.381
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.452
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0.596
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0227
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.719
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.488
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.596
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.297
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.603
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.649
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0202
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.25
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.517
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.596
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.897
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.297
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0.993
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.366
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12349

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.444
MA0003.1	MA0003.1	0.0103
MA0004.1	MA0004.1	0.554
MA0006.1	MA0006.1	0.254
MA0007.1	MA0007.1	0.0627
MA0009.1	MA0009.1	0.786
MA0014.1	MA0014.1	0.307
MA0017.1	MA0017.1	2.96656e-15
MA0018.2	MA0018.2	1.63658e-4
MA0019.1	MA0019.1	0.945
MA0024.1	MA0024.1	0.013
MA0025.1	MA0025.1	0.564
MA0027.1	MA0027.1	0.968
MA0028.1	MA0028.1	0.0934
MA0029.1	MA0029.1	0.363
MA0030.1	MA0030.1	0.216
MA0031.1	MA0031.1	0.102
MA0035.2	MA0035.2	0.0239
MA0038.1	MA0038.1	0.107
MA0039.2	MA0039.2	0.629
MA0040.1	MA0040.1	0.374
MA0041.1	MA0041.1	0.336
MA0042.1	MA0042.1	0.676
MA0043.1	MA0043.1	0.0144
MA0046.1	MA0046.1	1.23756e-61
MA0047.2	MA0047.2	3.19839e-5
MA0048.1	MA0048.1	0.817
MA0050.1	MA0050.1	0.875
MA0051.1	MA0051.1	0.824
MA0052.1	MA0052.1	0.52
MA0055.1	MA0055.1	0.788
MA0057.1	MA0057.1	0.171
MA0058.1	MA0058.1	0.453
MA0059.1	MA0059.1	0.0628
MA0060.1	MA0060.1	2.18495e-5
MA0061.1	MA0061.1	0.876
MA0062.2	MA0062.2	0.0014
MA0065.2	MA0065.2	3.12633e-9
MA0066.1	MA0066.1	0.0283
MA0067.1	MA0067.1	0.0131
MA0068.1	MA0068.1	0.0399
MA0069.1	MA0069.1	0.296
MA0070.1	MA0070.1	0.382
MA0071.1	MA0071.1	0.0512
MA0072.1	MA0072.1	0.0838
MA0073.1	MA0073.1	0.646
MA0074.1	MA0074.1	0.261
MA0076.1	MA0076.1	0.0214
MA0077.1	MA0077.1	0.431
MA0078.1	MA0078.1	0.804
MA0079.2	MA0079.2	0.413
MA0080.2	MA0080.2	2.89897e-4
MA0081.1	MA0081.1	0.122
MA0083.1	MA0083.1	0.0788
MA0084.1	MA0084.1	0.608
MA0087.1	MA0087.1	0.69
MA0088.1	MA0088.1	0.371
MA0090.1	MA0090.1	0.764
MA0091.1	MA0091.1	0.882
MA0092.1	MA0092.1	0.407
MA0093.1	MA0093.1	0.548
MA0099.2	MA0099.2	4.5346e-6
MA0100.1	MA0100.1	0.374
MA0101.1	MA0101.1	0.217
MA0102.2	MA0102.2	0.745
MA0103.1	MA0103.1	0.0043
MA0104.2	MA0104.2	0.448
MA0105.1	MA0105.1	0.154
MA0106.1	MA0106.1	0.297
MA0107.1	MA0107.1	0.203
MA0108.2	MA0108.2	0.276
MA0111.1	MA0111.1	0.745
MA0112.2	MA0112.2	4.53556e-7
MA0113.1	MA0113.1	0.219
MA0114.1	MA0114.1	2.64876e-13
MA0115.1	MA0115.1	3.05902e-7
MA0116.1	MA0116.1	4.88315e-4
MA0117.1	MA0117.1	0.645
MA0119.1	MA0119.1	0.0473
MA0122.1	MA0122.1	0.722
MA0124.1	MA0124.1	0.853
MA0125.1	MA0125.1	0.855
MA0131.1	MA0131.1	0.306
MA0135.1	MA0135.1	0.855
MA0136.1	MA0136.1	1.65999e-5
MA0137.2	MA0137.2	0.00711
MA0138.2	MA0138.2	0.0317
MA0139.1	MA0139.1	0.144
MA0140.1	MA0140.1	0.0866
MA0141.1	MA0141.1	4.92118e-5
MA0142.1	MA0142.1	0.00717
MA0143.1	MA0143.1	0.103
MA0144.1	MA0144.1	0.00749
MA0145.1	MA0145.1	0.306
MA0146.1	MA0146.1	0.0583
MA0147.1	MA0147.1	0.351
MA0148.1	MA0148.1	6.53285e-4
MA0149.1	MA0149.1	0.197
MA0150.1	MA0150.1	0.691
MA0152.1	MA0152.1	4.31821e-5
MA0153.1	MA0153.1	1.63567e-42
MA0154.1	MA0154.1	0.0159
MA0155.1	MA0155.1	0.343
MA0156.1	MA0156.1	0.0149
MA0157.1	MA0157.1	0.0529
MA0159.1	MA0159.1	4.5834e-4
MA0160.1	MA0160.1	0.0122
MA0162.1	MA0162.1	0.357
MA0163.1	MA0163.1	4.41973e-4
MA0164.1	MA0164.1	0.666
MA0258.1	MA0258.1	5.04605e-4
MA0259.1	MA0259.1	0.79

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12349

Novel motif	Logo	P-value
1	1	0.0426
10	10	0.204
100	100	0.228
101	101	0.998
102	102	0.265
103	103	0.147
104	104	0.77
105	105	0.377
106	106	0.00558
107	107	0.0172
108	108	0.392
109	109	0.185
11	11	0.167
110	110	0.237
111	111	0.179
112	112	0.0119
113	113	0.229
114	114	0.023
115	115	0.726
116	116	0.237
117	117	0.36
118	118	0.375
119	119	0.0182
12	12	0.503
120	120	0.96
121	121	0.159
122	122	0.527
123	123	0.764
124	124	0.0444
125	125	0.298
126	126	0.218
127	127	0.72
128	128	0.0493
129	129	0.202
13	13	0.106
130	130	0.0686
131	131	0.857
132	132	0.447
133	133	0.688
134	134	0.737
135	135	0.393
136	136	0.748
137	137	0.765
138	138	0.201
139	139	0.316
14	14	0.8
140	140	0.221
141	141	0.0697
142	142	0.202
143	143	0.359
144	144	0.749
145	145	0.129
146	146	0.161
147	147	0.655
148	148	0.0244
149	149	0.0612
15	15	0.0987
150	150	0.479
151	151	0.204
152	152	0.258
153	153	0.818
154	154	0.537
155	155	0.0602
156	156	0.942
157	157	0.892
158	158	0.883
159	159	0.43
16	16	0.256
160	160	0.208
161	161	0.627
162	162	0.41
163	163	0.72
164	164	0.244
165	165	0.0301
166	166	0.808
167	167	0.111
168	168	0.742
169	169	4.91825e-4
17	17	0.232
18	18	0.243
19	19	0.0732
2	2	0.529
20	20	0.998
21	21	0.627
22	22	0.132
23	23	0.109
24	24	0.873
25	25	0.948
26	26	0.0285
27	27	0.42
28	28	0.866
29	29	0.42
3	3	0.219
30	30	0.948
31	31	0.352
32	32	0.399
33	33	0.346
34	34	0.568
35	35	0.0824
36	36	0.0536
37	37	0.216
38	38	0.277
39	39	0.329
4	4	0.301
40	40	0.0712
41	41	0.34
42	42	0.541
43	43	0.123
44	44	1.71914e-5
45	45	0.474
46	46	0.0997
47	47	0.332
48	48	0.262
49	49	0.123
5	5	0.225
50	50	0.458
51	51	0.618
52	52	0.105
53	53	0.963
54	54	0.377
55	55	0.706
56	56	0.621
57	57	0.486
58	58	0.339
59	59	0.0898
6	6	0.789
60	60	0.0368
61	61	0.412
62	62	0.177
63	63	0.111
64	64	0.432
65	65	0.0964
66	66	0.463
67	67	0.237
68	68	0.644
69	69	0.533
7	7	0.113
70	70	0.0767
71	71	0.0665
72	72	0.595
73	73	0.164
74	74	0.819
75	75	0.133
76	76	0.943
77	77	0.0536
78	78	0.0707
79	79	0.336
8	8	0.0478
80	80	0.673
81	81	0.256
82	82	0.166
83	83	0.608
84	84	0.301
85	85	0.0203
86	86	0.272
87	87	0.924
88	88	0.509
89	89	0.0869
9	9	0.964
90	90	0.0628
91	91	0.184
92	92	0.103
93	93	0.417
94	94	0.841
95	95	0.616
96	96	0.189
97	97	0.57
98	98	0.403
99	99	0.0548

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12349

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000078 human hepatocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000078 (human hepatocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008200
+|DRA_sample_Accession=CAGE@SAMD00005065
-|accession_numbers=CAGE;DRX008308;DRR009180;DRZ000605;DRZ001990
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005065
+|accession_numbers=CAGE;DRX008308;DRR009180;DRZ000605;DRZ001990;DRZ011955;DRZ013340
+|accession_numbers_RNASeq=sRNA-Seq;DRX037267;DRR041633;DRZ007275
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.64!4316.58!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.95!894.37!SEBOX;;chr19:4153613..4153652,+!p1@CREB3L3!2.69!491.41!CREB3L3;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.69!487.48!SEBOX;;chr7:73038839..73038862,-!p1@MLXIPL!2.28!187.72!MLXIPL;;chr19:50432453..50432468,+!p1@ATF5!2.15!7183.48!ATF5;;chr15:53082521..53082549,-!p1@ONECUT1!2.15!140.54!ONECUT1;;chr1:214161272..214161322,+!p1@PROX1!2.02!143.49!PROX1;;chr12:100867627..100867652,+!p1@NR1H4!2.00!99.27!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.96!90.42!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.93!83.54!HNF4A;;chr19:33793430..33793447,-!p1@CEBPA!1.91!322.37!CEBPA;;chr19:50435736..50435781,+!p3@ATF5!1.85!94.35!ATF5;;chr19:46367576..46367592,+!p1@FOXA3!1.82!64.87!FOXA3;;chr1:27240455..27240474,-!p1@NR0B2!1.77!57.99!NR0B2;;chr1:201979743..201979762,+!p1@ELF3!1.71!50.12!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.66!45.21!ELF3;;chr20:42984330..42984364,+!p2@HNF4A!1.66!45.21!HNF4A;;chr14:38064429..38064486,-!p1@FOXA1!1.61!39.31!FOXA1;;chr16:85932760..85932775,+!p1@IRF8!1.59!38.33!IRF8;;chr2:46524897..46524911,+!p2@EPAS1!1.54!90.42!EPAS1;;chr8:76319876..76319926,+!p1@HNF4G!1.54!33.42!HNF4G;;chr1:199996733..199996781,+!p1@NR5A2!1.46!27.52!NR5A2;;chr7:73038867..73038878,-!p2@MLXIPL!1.44!26.54!MLXIPL;;chr8:11561684..11561751,+!p1@GATA4!1.44!26.54!GATA4;;chr6:126240380..126240430,+!p2@NCOA7!1.43!65.85!NCOA7;;chr19:4153719..4153730,+!p2@CREB3L3!1.42!25.55!CREB3L3;;chr17:26694979..26695007,-!p4@SEBOX!1.42!25.55!SEBOX;;chr8:71316428..71316459,-!p2@NCOA2!1.41!41.28!NCOA2;;chr19:50435673..50435690,+!p8@ATF5!1.39!23.59!ATF5;;chr17:53344945..53344977,+!p2@HLF!1.37!22.61!HLF;;chr20:51589133..51589159,+!p2@TSHZ2!1.35!21.62!TSHZ2;;chr9:137217986..137218049,+!p3@RXRA!1.33!57.99!RXRA;;chr11:61520075..61520136,+!p1@C11orf9!1.32!41.28!C11orf9;;chr6:126240356..126240379,+!p7@NCOA7!1.29!22.61!NCOA7;;chr12:100897130..100897149,+!p3@NR1H4!1.29!18.67!NR1H4;;chr16:67198683..67198698,+!p2@HSF4!1.29!18.67!HSF4;;chr1:151804244..151804310,-!p1@RORC!1.29!18.67!RORC;;chr17:17726907..17726958,-!p2@SREBF1!1.28!108.11!SREBF1;;chrX:131547625..131547644,-!p4@MBNL3!1.27!17.69!MBNL3;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.69!KDM5D;;chr16:51185318..51185348,-!p2@SALL1!1.22!15.73!SALL1;;chr1:199996702..199996732,+!p5@NR5A2!1.20!14.74!NR5A2;;chr20:22564895..22564910,-!p1@FOXA2!1.20!14.74!FOXA2;;chr8:71316403..71316427,-!p6@NCOA2!1.17!16.71!NCOA2;;chr17:53342311..53342400,+!p1@HLF!1.17!15.73!HLF;;chr19:50435704..50435718,+!p11@ATF5!1.17!13.76!ATF5;;chr6:91006518..91006570,-!p1@BACH2!1.14!29.48!BACH2;;chrY:2803415..2803468,+!p1@ZFY!1.14!12.78!ZFY;;chr10:94449703..94449718,+!p1@HHEX!1.12!47.18!HHEX;;chr17:17723626..17723663,-!p4@SREBF1!1.11!24.57!SREBF1;;chr22:29196492..29196503,-!p3@XBP1!1.11!18.67!XBP1;;chr2:68592406..68592424,+!p1@PLEK!1.11!11.79!PLEK;;chr11:47400078..47400106,-!p1@SPI1!1.11!11.79!SPI1;;chr17:26694940..26694949,-!p6@SEBOX!1.11!11.79!SEBOX;;chr1:214161358..214161377,+!p3@PROX1!1.11!11.79!PROX1;;chr11:47279504..47279563,+!p1@NR1H3!1.07!24.57!NR1H3;;chr3:126073018..126073036,-!p3@KLF15!1.07!10.81!KLF15;;chr3:147111198..147111225,+!p4@ZIC1!1.07!10.81!ZIC1;;chr19:50434005..50434020,+!p10@ATF5!1.07!10.81!ATF5;;chr1:119457098..119457116,-!p12@TBX15!1.07!10.81!TBX15;;chr18:55102598..55102623,+!p1@ONECUT2!1.07!10.81!ONECUT2;;chr22:46546494..46546525,+!p2@PPARA!1.06!20.64!PPARA;;chr7:113726357..113726443,+!p1@FOXP2!1.05!17.69!FOXP2;;chr22:29196433..29196445,-!p4@XBP1!1.03!10.81!XBP1;;chr15:53082178..53082190,-!p3@ONECUT1!1.03!9.83!ONECUT1;;chr1:161208013..161208038,-!p1@NR1I3!1.03!9.83!NR1I3;;chr1:214161328..214161348,+!p2@PROX1!1.03!9.83!PROX1;;chr22:29196547..29196563,-!p2@XBP1!1.02!352.83!XBP1;;chr18:6414884..6414942,-!p1@L3MBTL4!1.01!11.79!L3MBTL4;;chr11:113930291..113930339,+!p2@ZBTB16!1.00!14.74!ZBTB16;;chr9:137218281..137218340,+!p1@RXRA!0.99!255.54!RXRA;;chrX:57619083..57619113,+!p1@ZXDB!0.99!8.85!ZXDB;;chr16:52581025..52581072,-!p1@TOX3!0.99!8.85!TOX3;;chr17:26694801..26694812,-!p5@SEBOX!0.99!8.85!SEBOX;;chr17:26694831..26694842,-!p8@SEBOX!0.99!8.85!SEBOX;;chr6:151977801..151977813,+!p8@ESR1!0.99!8.85!ESR1;;chr7:99621306..99621328,+!p5@ZKSCAN1!0.99!8.85!ZKSCAN1;;chr3:126076242..126076257,-!p1@KLF15!0.98!10.81!KLF15;;chr2:10091815..10091864,+!p1@GRHL1!0.96!10.81!GRHL1;;chr3:12329397..12329433,+!p2@PPARG!0.95!18.67!PPARG;;chr16:88519743..88519754,+!p2@ZFPM1!0.95!8.85!ZFPM1;;chr17:26695013..26695024,-!p7@SEBOX!0.95!7.86!SEBOX;;chr17:53344980..53345011,+!p3@HLF!0.95!7.86!HLF;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.86!ZIC1;;chr14:38064590..38064606,-!p2@FOXA1!0.95!7.86!FOXA1;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.86!NCOA7;;chr6:391743..391759,+!p1@IRF4!0.95!7.86!IRF4;;chr7:73038865..73038866,-!p4@MLXIPL!0.95!7.86!MLXIPL;;chr1:200011711..200011752,+!p3@NR5A2!0.95!7.86!NR5A2;;chr21:40177845..40177863,+!p1@ETS2!0.94!468.81!ETS2;;chr2:46524878..46524891,+!p3@EPAS1!0.94!13.76!EPAS1;;chr1:61548225..61548299,+!p1@NFIA!0.92!100.25!NFIA;;chr17:40540484..40540537,-!p2@STAT3!0.92!72.73!STAT3;;chr17:41223072..41223083,-!p12@BRCA1!0.90!6.88!BRCA1;;chr19:33865223..33865254,+!p5@CEBPG!0.90!6.88!CEBPG;;chr19:35760698..35760738,+!p8@USF2!0.90!6.88!USF2;;chr1:200008734..200008765,+!p2@NR5A2!0.90!6.88!NR5A2;;chr20:43030002..43030028,+!p3@HNF4A!0.90!6.88!HNF4A;;chr3:126072967..126072981,-!p4@KLF15!0.90!6.88!KLF15;;chr9:22447422..22447483,+!p1@DMRTA1!0.90!6.88!DMRTA1;;chr10:45495709..45495725,+!p5@ZNF22!0.90!6.88!ZNF22;;chr12:121416340..121416360,+!p1@HNF1A!0.90!6.88!HNF1A;;chrX:66763856..66763896,+!p1@AR!0.88!9.83!AR;;chr15:60884706..60884743,-!p1@RORA!0.87!35.38!RORA;;chr3:126076264..126076305,-!p2@KLF15!0.86!8.85!KLF15;;chr6:126240442..126240459,+!p4@NCOA7!0.85!7.86!NCOA7;;chr1:209979467..209979494,-!p1@IRF6!0.85!6.88!IRF6;;chr20:22566089..22566097,-!p6@FOXA2!0.84!5.90!FOXA2;;chr7:114055245..114055258,+!p7@FOXP2!0.84!5.90!FOXP2;;chr7:73038889..73038905,-!p3@MLXIPL!0.84!5.90!MLXIPL;;chr7:97840743..97840786,+!p1@BHLHA15!0.84!5.90!BHLHA15;;chrX:131547596..131547609,-!p10@MBNL3!0.84!5.90!MBNL3;;chrX:131540410..131540438,-!p13@MBNL3!0.84!5.90!MBNL3;;chr16:51185172..51185197,-!p1@SALL1!0.84!5.90!SALL1;;chr3:27763807..27763822,-!p1@EOMES!0.84!5.90!EOMES;;chr11:47400062..47400077,-!p2@SPI1!0.84!5.90!SPI1;;chr12:100867695..100867706,+!p6@NR1H4!0.84!5.90!NR1H4;;chr12:100867736..100867750,+!p4@NR1H4!0.84!5.90!NR1H4;;chr11:615942..615957,-!p1@IRF7!0.83!58.97!IRF7;;chr10:94449675..94449694,+!p2@HHEX!0.79!14.74!HHEX;;chr3:114819124..114819200,-!p3@ZBTB20!0.79!12.78!ZBTB20;;chr2:85981222..85981259,+!p2@ATOH8!0.79!8.85!ATOH8;;chr17:17723746..17723766,-!p5@SREBF1!0.79!8.85!SREBF1;;chr20:50159198..50159299,-!p1@NFATC2!0.79!7.86!NFATC2;;chr20:39317868..39317884,-!p1@MAFB!0.78!64.87!MAFB;;chr16:79634624..79634642,-!p1@MAF!0.78!21.62!MAF;;chr19:33865009..33865090,+!p3@CEBPG!0.78!6.88!CEBPG;;chr20:51588873..51588953,+!p1@TSHZ2!0.78!6.88!TSHZ2;;chr2:46612334..46612349,+!p6@EPAS1!0.78!6.88!EPAS1;;chr3:12330560..12330579,+!p1@PPARG!0.78!5.90!PPARG;;chr19:56652621..56652641,+!p2@ZNF444!0.77!10.81!ZNF444;;chr18:42277095..42277130,+!p8@SETBP1!0.77!4.91!SETBP1;;chr18:55102628..55102646,+!p2@ONECUT2!0.77!4.91!ONECUT2;;chr2:85981107..85981120,+!p3@ATOH8!0.77!4.91!ATOH8;;chr3:147111505..147111529,+!p6@ZIC1!0.77!4.91!ZIC1;;chr3:24536332..24536358,-!p2@THRB!0.77!4.91!THRB;;chr10:114710098..114710130,+!p2@TCF7L2!0.76!39.31!TCF7L2;;chr2:10183651..10183713,+!p1@KLF11!0.76!38.33!KLF11;;chr13:41635029..41635044,-!p4@ELF1!0.76!10.81!ELF1;;chrX:107018969..107019024,-!p6@TSC22D3!0.76!6.88!TSC22D3;;chr11:113930425..113930471,+!p1@ZBTB16!0.75!6.88!ZBTB16;;chr15:60884747..60884774,-!p3@RORA!0.74!11.79!RORA;;chr12:24715376..24715432,-!p1@SOX5!0.74!5.90!SOX5;;chr10:51565239..51565263,+!p2@NCOA4!0.72!113.03!NCOA4;;chr19:46271505..46271575,-!p2@SIX5!0.72!11.79!SIX5;;chr6:126240463..126240489,+!p6@NCOA7!0.72!4.91!NCOA7;;chr17:17726892..17726903,-!p6@SREBF1!0.72!4.91!SREBF1;;chr18:19749517..19749531,+!p3@GATA6!0.71!7.86!GATA6;;chr10:43134047..43134079,-!p3@ZNF33B!0.71!5.90!ZNF33B;;chr8:48650715..48650735,-!p1@CEBPD!0.70!589.70!CEBPD;;chr3:193853927..193853944,+!p1@HES1!0.70!149.39!HES1;;chr5:76383133..76383186,-!p2@ZBED3!0.70!8.85!ZBED3;;chr17:40540377..40540481,-!p1@STAT3!0.69!227.03!STAT3;;chr22:41777927..41777971,+!p1@TEF!0.69!37.35!TEF;;chr3:24536253..24536328,-!p1@THRB!0.69!7.86!THRB;;chr1:10754477..10754517,-!p1@CASZ1!0.69!6.88!CASZ1;;chr17:17723702..17723721,-!p7@SREBF1!0.69!4.91!SREBF1;;chr16:67198633..67198671,+!p1@HSF4!0.69!3.93!HSF4;;chr17:36105074..36105086,-!p2@HNF1B!0.69!3.93!HNF1B;;chr18:42260840..42260860,+!p2@SETBP1!0.69!3.93!SETBP1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.69!3.93!ZBTB7C;;chr22:46567171..46567203,+!p6@PPARA!0.69!3.93!PPARA;;chr3:12329464..12329472,+!p6@PPARG!0.69!3.93!PPARG;;chr3:187455529..187455544,-!p5@BCL6!0.69!3.93!BCL6;;chr3:187455680..187455700,-!p4@BCL6!0.69!3.93!BCL6;;chr4:149363494..149363543,-!p1@NR3C2!0.69!3.93!NR3C2;;chr7:115670804..115670825,-!p1@TFEC!0.69!3.93!TFEC;;chr19:50435645..50435653,+!p16@ATF5!0.69!3.93!ATF5;;chr1:199996831..199996843,+!p4@NR5A2!0.69!3.93!NR5A2;;chr1:214161619..214161629,+!p5@PROX1!0.69!3.93!PROX1;;chr20:51589107..51589120,+!p9@TSHZ2!0.69!3.93!TSHZ2;;chr20:51589792..51589811,+!p7@TSHZ2!0.69!3.93!TSHZ2;;chr10:45495946..45495976,+!p2@ZNF22!0.69!3.93!ZNF22;;chr11:113930401..113930422,+!p3@ZBTB16!0.69!3.93!ZBTB16;;chr11:16133391..16133439,-!p6@SOX6!0.69!3.93!SOX6;;chr12:100867777..100867788,+!p5@NR1H4!0.69!3.93!NR1H4;;chr12:24102576..24102623,-!p2@SOX5!0.69!3.93!SOX5;;chr2:27357446..27357475,-!p2@PREB!0.68!14.74!PREB;;chr8:145535378..145535420,+!p4@HSF1!0.68!4.91!HSF1;;chr19:33864600..33864732,+!p1@CEBPG!0.67!119.90!CEBPG;;chr4:146402997..146403020,+!p1@SMAD1!0.67!29.48!SMAD1;;chr10:98592751..98592765,+!p5@LCOR!0.67!4.91!LCOR;;chr17:38498402..38498445,+!p3@RARA!0.66!14.74!RARA;;chrX:66763815..66763854,+!p2@AR!0.66!4.91!AR;;chr12:12764917..12764931,+!p4@CREBL2!0.66!4.91!CREBL2;;chr2: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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
 |ffid_belonging_in_development=CL:0000134,CL:0000223
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11603-120I1
 |is_a=EFO:0002091;;FF:0000078
 |is_obsolete=
 |library_id=CNhs12349
-|library_id_phase_based=1:CNhs12349
+|library_id_phase_based=2:CNhs12349
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11603
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.AGTTCC.11603
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11603
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.AGTTCC.11603
 |name=Hepatocyte, donor2
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12349,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 67: / Line 82: @@
 |rna_tube_id=120I1
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10066.AGTTCC
 |sample_age=
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11603-120I1;search_select_hide=table117:FF:11603-120I1
 }}

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FF:11603-120I1: Difference between revisions

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Latest revision as of 18:11, 4 June 2020

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