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(Created page with "{{f5samples |id=FF:11618-122A7 |name=Mesenchymal Stem Cells - hepatic, donor2 |sample_id=11618 |rna_tube_id=122A7 |rna_box=122 |rna_position=A7 |sample_cell_lot= |samp...")
 
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{{f5samples
{{f5samples
|id=FF:11618-122A7
|DRA_sample_Accession=CAGE@SAMD00004979
|name=Mesenchymal Stem Cells - hepatic, donor2
|accession_numbers=CAGE;DRX008356;DRR009228;DRZ000653;DRZ002038;DRZ012003;DRZ013388
|sample_id=11618
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|rna_tube_id=122A7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002195,CL:0002571
|rna_box=122
|rna_position=A7
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=Sciencell/3H
|rna_lot_number=2460.00000
|rna_catalog_number=SC7525
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=liver
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=mesenchymal stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.38400
|sample_note=
|profile_hcage=CNhs12730,LSID960,,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002195,CL:0002320,CL:0002371,CL:0002571
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002384,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000098
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002571;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
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|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520hepatic%252c%2520donor2.CNhs12730.11618-122A7.hg38.nobarcode.ctss.bed.gz
|id=FF:11618-122A7
|is_a=EFO:0002091;;FF:0000098
|is_obsolete=
|library_id=CNhs12730
|library_id_phase_based=2:CNhs12730
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11618
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11618
|name=Mesenchymal Stem Cells - hepatic, donor2
|namespace=FANTOM5
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|profile_hcage=CNhs12730,LSID960,release012,COMPLETED
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|rna_box=122
|rna_catalog_number=SC7525
|rna_concentration=0.384
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=2460
|rna_od260/230=
|rna_od260/280=
|rna_position=A7
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=122A7
|rna_weight_ug=10
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=mesenchymal stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.41123847955957e-212!GO:0005737;cytoplasm;2.31311425551865e-186!GO:0043231;intracellular membrane-bound organelle;1.45889853112225e-166!GO:0043227;membrane-bound organelle;1.84262072048335e-166!GO:0043226;organelle;9.58196813846528e-165!GO:0043229;intracellular organelle;2.69559321795347e-164!GO:0044444;cytoplasmic part;2.21109126023556e-141!GO:0044422;organelle part;1.07413469122825e-116!GO:0044446;intracellular organelle part;4.3094664494389e-115!GO:0044238;primary metabolic process;6.64728835251068e-87!GO:0044237;cellular metabolic process;8.24605712702793e-87!GO:0032991;macromolecular complex;5.24430676575658e-75!GO:0043170;macromolecule metabolic process;3.92490101126582e-74!GO:0005515;protein binding;8.52261915471579e-74!GO:0030529;ribonucleoprotein complex;9.41935875117185e-73!GO:0005739;mitochondrion;2.11638490606968e-64!GO:0043233;organelle lumen;4.03593435301119e-64!GO:0031974;membrane-enclosed lumen;4.03593435301119e-64!GO:0003723;RNA binding;9.97949406084698e-56!GO:0044428;nuclear part;1.26648154529489e-55!GO:0005634;nucleus;1.13266806418305e-52!GO:0031090;organelle membrane;2.64494788061984e-52!GO:0019538;protein metabolic process;7.1270678607759e-51!GO:0005840;ribosome;4.57322278132597e-46!GO:0044260;cellular macromolecule metabolic process;1.04637190616152e-45!GO:0009058;biosynthetic process;2.33543114178732e-45!GO:0006412;translation;7.31073024163779e-45!GO:0044267;cellular protein metabolic process;1.86787069892992e-44!GO:0044429;mitochondrial part;4.99137728496525e-43!GO:0016043;cellular component organization and biogenesis;4.78139228593603e-42!GO:0015031;protein transport;8.15421800868803e-42!GO:0033036;macromolecule localization;1.96297252734183e-41!GO:0003735;structural constituent of ribosome;6.85960051363306e-40!GO:0044249;cellular biosynthetic process;1.54714889138632e-39!GO:0008104;protein localization;1.25331128591676e-38!GO:0045184;establishment of protein localization;1.48155565875597e-38!GO:0006396;RNA processing;4.44434390363766e-38!GO:0031967;organelle envelope;9.45052896083697e-38!GO:0031975;envelope;2.33558351530086e-37!GO:0005829;cytosol;6.84264123989151e-37!GO:0009059;macromolecule biosynthetic process;7.21871870322818e-37!GO:0043283;biopolymer metabolic process;7.2791918075363e-36!GO:0043234;protein complex;1.01444931185895e-35!GO:0010467;gene expression;6.67216187290395e-35!GO:0033279;ribosomal subunit;8.87729353388495e-35!GO:0031981;nuclear lumen;1.47889823349204e-34!GO:0046907;intracellular transport;4.50040506641761e-32!GO:0016071;mRNA metabolic process;2.24513964633208e-31!GO:0008380;RNA splicing;6.01028098092534e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.67225090766315e-28!GO:0005740;mitochondrial envelope;1.12905177523706e-27!GO:0065003;macromolecular complex assembly;4.34818838563201e-27!GO:0006397;mRNA processing;7.124683672347e-27!GO:0006886;intracellular protein transport;7.39145135164336e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.03424317006622e-26!GO:0031966;mitochondrial membrane;2.58710469467058e-26!GO:0019866;organelle inner membrane;2.16789737507703e-25!GO:0005783;endoplasmic reticulum;2.88486895533218e-25!GO:0022607;cellular component assembly;1.18106949736676e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.82588300341007e-24!GO:0005743;mitochondrial inner membrane;9.61499378879793e-24!GO:0012505;endomembrane system;8.06022319371682e-23!GO:0006996;organelle organization and biogenesis;1.24333923957757e-22!GO:0005654;nucleoplasm;3.21967464364417e-22!GO:0044445;cytosolic part;9.96312301674014e-22!GO:0006457;protein folding;7.01763033253063e-21!GO:0006119;oxidative phosphorylation;1.41710351855842e-20!GO:0005681;spliceosome;1.69431284103761e-20!GO:0044432;endoplasmic reticulum part;9.13421927820786e-20!GO:0031980;mitochondrial lumen;2.27502386950497e-19!GO:0005759;mitochondrial matrix;2.27502386950497e-19!GO:0048770;pigment granule;3.10997234044736e-19!GO:0042470;melanosome;3.10997234044736e-19!GO:0051641;cellular localization;4.89853737345693e-19!GO:0051649;establishment of cellular localization;5.91049429538462e-19!GO:0044451;nucleoplasm part;1.60907439706804e-18!GO:0044455;mitochondrial membrane part;4.18158138581868e-18!GO:0043228;non-membrane-bound organelle;4.43211593352876e-18!GO:0043232;intracellular non-membrane-bound organelle;4.43211593352876e-18!GO:0015934;large ribosomal subunit;5.38701211762677e-18!GO:0000166;nucleotide binding;8.37506963460737e-18!GO:0015935;small ribosomal subunit;1.10474660791592e-17!GO:0005794;Golgi apparatus;2.5331299005083e-17!GO:0016462;pyrophosphatase activity;4.61638888161277e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.97003461177857e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;6.41771180245857e-17!GO:0008134;transcription factor binding;1.80183442487878e-16!GO:0022618;protein-RNA complex assembly;1.80940168959486e-16!GO:0051186;cofactor metabolic process;2.2986375926398e-16!GO:0017111;nucleoside-triphosphatase activity;5.11866241808991e-16!GO:0044265;cellular macromolecule catabolic process;5.39656794568064e-16!GO:0016874;ligase activity;9.68933776801201e-16!GO:0044248;cellular catabolic process;1.61685991786226e-15!GO:0005746;mitochondrial respiratory chain;1.62825310626174e-15!GO:0003676;nucleic acid binding;3.27696785339352e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.48694187849882e-15!GO:0019941;modification-dependent protein catabolic process;7.64214134182058e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.64214134182058e-15!GO:0044257;cellular protein catabolic process;8.79872350444e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.0528919954264e-15!GO:0006512;ubiquitin cycle;1.42038190820564e-14!GO:0048193;Golgi vesicle transport;1.55639722128963e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.76430922986264e-14!GO:0016070;RNA metabolic process;2.74620251460621e-14!GO:0043285;biopolymer catabolic process;3.60952852229093e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.77850174024686e-14!GO:0006259;DNA metabolic process;4.34522998918129e-14!GO:0051082;unfolded protein binding;5.62821611923058e-14!GO:0009057;macromolecule catabolic process;5.97994441601964e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.65396912087381e-14!GO:0008135;translation factor activity, nucleic acid binding;8.14213532831952e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.28736180329386e-13!GO:0016192;vesicle-mediated transport;1.64773800995102e-13!GO:0005789;endoplasmic reticulum membrane;1.68944750038843e-13!GO:0006732;coenzyme metabolic process;1.68944750038843e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.92033975608613e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.37765483082446e-13!GO:0003954;NADH dehydrogenase activity;2.37765483082446e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.37765483082446e-13!GO:0006605;protein targeting;2.97807669138713e-13!GO:0032553;ribonucleotide binding;6.80170154687513e-13!GO:0032555;purine ribonucleotide binding;6.80170154687513e-13!GO:0005730;nucleolus;7.46533552375164e-13!GO:0030163;protein catabolic process;7.51970900960867e-13!GO:0005761;mitochondrial ribosome;7.89717472768176e-13!GO:0000313;organellar ribosome;7.89717472768176e-13!GO:0017076;purine nucleotide binding;1.2759201939905e-12!GO:0005793;ER-Golgi intermediate compartment;2.92782127602317e-12!GO:0007049;cell cycle;4.41715967534796e-12!GO:0043412;biopolymer modification;7.5485611240883e-12!GO:0042775;organelle ATP synthesis coupled electron transport;8.40968995237953e-12!GO:0042773;ATP synthesis coupled electron transport;8.40968995237953e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.15904188552368e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.64227348584051e-11!GO:0045271;respiratory chain complex I;1.64227348584051e-11!GO:0005747;mitochondrial respiratory chain complex I;1.64227348584051e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.25436060541579e-11!GO:0003712;transcription cofactor activity;4.79130852999182e-11!GO:0005635;nuclear envelope;6.52962135829865e-11!GO:0006464;protein modification process;6.92201612242883e-11!GO:0003743;translation initiation factor activity;1.03708822449371e-10!GO:0048523;negative regulation of cellular process;1.04684927228263e-10!GO:0006413;translational initiation;1.41273581976128e-10!GO:0009055;electron carrier activity;1.64501184343523e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.83418143551712e-10!GO:0000375;RNA splicing, via transesterification reactions;1.83418143551712e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.83418143551712e-10!GO:0006446;regulation of translational initiation;4.66792494961051e-10!GO:0031965;nuclear membrane;4.80137307800607e-10!GO:0008565;protein transporter activity;6.44195202812755e-10!GO:0012501;programmed cell death;9.08941049411821e-10!GO:0006366;transcription from RNA polymerase II promoter;1.46626943892535e-09!GO:0006915;apoptosis;2.14920059635087e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.19656661419032e-09!GO:0009259;ribonucleotide metabolic process;2.4121581768148e-09!GO:0016491;oxidoreductase activity;2.57422159066934e-09!GO:0006913;nucleocytoplasmic transport;2.770798978019e-09!GO:0050794;regulation of cellular process;2.83740852803848e-09!GO:0043687;post-translational protein modification;3.09695865074454e-09!GO:0009056;catabolic process;3.70591917125591e-09!GO:0006163;purine nucleotide metabolic process;4.25048894633283e-09!GO:0016604;nuclear body;4.36063293297133e-09!GO:0008219;cell death;4.88635966745777e-09!GO:0016265;death;4.88635966745777e-09!GO:0042254;ribosome biogenesis and assembly;5.91693141720013e-09!GO:0051169;nuclear transport;5.94342604203921e-09!GO:0003924;GTPase activity;6.4004570947756e-09!GO:0048519;negative regulation of biological process;6.63749639243674e-09!GO:0032559;adenyl ribonucleotide binding;7.35823402661051e-09!GO:0044453;nuclear membrane part;7.79676781185929e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.95133409604398e-09!GO:0006461;protein complex assembly;1.01922047572649e-08!GO:0005524;ATP binding;1.05639745089826e-08!GO:0009150;purine ribonucleotide metabolic process;1.10408942055228e-08!GO:0005788;endoplasmic reticulum lumen;1.29243046934556e-08!GO:0030554;adenyl nucleotide binding;1.60748704644086e-08!GO:0009060;aerobic respiration;1.81419475179123e-08!GO:0022402;cell cycle process;1.89080711915626e-08!GO:0006164;purine nucleotide biosynthetic process;2.47216158696593e-08!GO:0045333;cellular respiration;2.56157146223918e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.64810841204304e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.65064678108207e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.03589593185314e-08!GO:0051188;cofactor biosynthetic process;4.09887960534798e-08!GO:0008654;phospholipid biosynthetic process;4.33871145936587e-08!GO:0009260;ribonucleotide biosynthetic process;4.37618291988268e-08!GO:0015986;ATP synthesis coupled proton transport;4.51895208418075e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.51895208418075e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.79911279508525e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.79911279508525e-08!GO:0006974;response to DNA damage stimulus;4.81238835843e-08!GO:0017038;protein import;5.01743334129549e-08!GO:0051246;regulation of protein metabolic process;5.49543142314267e-08!GO:0009141;nucleoside triphosphate metabolic process;6.13160783479601e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.25713499157898e-08!GO:0005768;endosome;6.319176914937e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.95583615930282e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.95583615930282e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.95583615930282e-08!GO:0019787;small conjugating protein ligase activity;1.07237633716775e-07!GO:0008639;small protein conjugating enzyme activity;1.07237633716775e-07!GO:0016607;nuclear speck;1.08415073963212e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.13060225016844e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.13060225016844e-07!GO:0050789;regulation of biological process;1.22234336968219e-07!GO:0048475;coated membrane;1.26480488797841e-07!GO:0030117;membrane coat;1.26480488797841e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.65997556578727e-07!GO:0004842;ubiquitin-protein ligase activity;1.90173496844999e-07!GO:0006399;tRNA metabolic process;1.96722508335563e-07!GO:0030120;vesicle coat;2.18312001112268e-07!GO:0030662;coated vesicle membrane;2.18312001112268e-07!GO:0031982;vesicle;2.24211027620447e-07!GO:0016564;transcription repressor activity;2.35797046396901e-07!GO:0003714;transcription corepressor activity;2.47382965214538e-07!GO:0009109;coenzyme catabolic process;2.82278917502338e-07!GO:0006099;tricarboxylic acid cycle;2.92266012532714e-07!GO:0046356;acetyl-CoA catabolic process;2.92266012532714e-07!GO:0031988;membrane-bound vesicle;2.97764035645848e-07!GO:0044431;Golgi apparatus part;2.99318259689117e-07!GO:0016887;ATPase activity;3.40219430079006e-07!GO:0051187;cofactor catabolic process;3.74500632477664e-07!GO:0009117;nucleotide metabolic process;3.80984780484502e-07!GO:0042623;ATPase activity, coupled;3.94576301723699e-07!GO:0031410;cytoplasmic vesicle;4.05783633735286e-07!GO:0046034;ATP metabolic process;4.20604499766899e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.26134491131729e-07!GO:0000278;mitotic cell cycle;5.14391168566144e-07!GO:0016853;isomerase activity;5.16611392367247e-07!GO:0019829;cation-transporting ATPase activity;5.41036183796704e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.54882074812159e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.99937961604688e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.99937961604688e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.99937961604688e-07!GO:0000074;regulation of progression through cell cycle;6.1123149961759e-07!GO:0065002;intracellular protein transport across a membrane;6.86292904005429e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.90299377446341e-07!GO:0051726;regulation of cell cycle;8.00116376766217e-07!GO:0043038;amino acid activation;8.07113420548898e-07!GO:0006418;tRNA aminoacylation for protein translation;8.07113420548898e-07!GO:0043039;tRNA aminoacylation;8.07113420548898e-07!GO:0006754;ATP biosynthetic process;8.44672577915057e-07!GO:0006753;nucleoside phosphate metabolic process;8.44672577915057e-07!GO:0006084;acetyl-CoA metabolic process;9.41301615879548e-07!GO:0005525;GTP binding;9.54380233543637e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.04241720953608e-06!GO:0016881;acid-amino acid ligase activity;1.12838689809457e-06!GO:0005643;nuclear pore;1.40415140251967e-06!GO:0005773;vacuole;1.43227516122424e-06!GO:0009108;coenzyme biosynthetic process;1.58688520209717e-06!GO:0031324;negative regulation of cellular metabolic process;1.70946185821549e-06!GO:0043069;negative regulation of programmed cell death;1.79354949058087e-06!GO:0006281;DNA repair;2.07443403378869e-06!GO:0005770;late endosome;2.12641014313915e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.32131109732846e-06!GO:0009719;response to endogenous stimulus;2.51529136929285e-06!GO:0005798;Golgi-associated vesicle;2.52392597532534e-06!GO:0043066;negative regulation of apoptosis;2.53912185036823e-06!GO:0046930;pore complex;2.7954261260329e-06!GO:0004386;helicase activity;2.81378723165152e-06!GO:0031252;leading edge;3.72991593034576e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.75686901775697e-06!GO:0016859;cis-trans isomerase activity;3.84347935243096e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.91681723615996e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;4.01787920661785e-06!GO:0008026;ATP-dependent helicase activity;4.36002196518019e-06!GO:0006752;group transfer coenzyme metabolic process;4.63049469700211e-06!GO:0032561;guanyl ribonucleotide binding;4.63049469700211e-06!GO:0019001;guanyl nucleotide binding;4.63049469700211e-06!GO:0005667;transcription factor complex;4.95601524319819e-06!GO:0008610;lipid biosynthetic process;4.97165270452966e-06!GO:0008361;regulation of cell size;5.31640472489644e-06!GO:0043067;regulation of programmed cell death;5.8946055221689e-06!GO:0042981;regulation of apoptosis;5.98469021338692e-06!GO:0043566;structure-specific DNA binding;6.12144669546777e-06!GO:0015980;energy derivation by oxidation of organic compounds;6.37051927577804e-06!GO:0051170;nuclear import;6.56735645543728e-06!GO:0045786;negative regulation of progression through cell cycle;6.59968632689004e-06!GO:0051276;chromosome organization and biogenesis;6.60626952324748e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.61991018485471e-06!GO:0006793;phosphorus metabolic process;7.16880785796399e-06!GO:0006796;phosphate metabolic process;7.16880785796399e-06!GO:0007005;mitochondrion organization and biogenesis;7.16880785796399e-06!GO:0045259;proton-transporting ATP synthase complex;7.47554315879229e-06!GO:0006916;anti-apoptosis;8.2230609574985e-06!GO:0050657;nucleic acid transport;8.63419750585493e-06!GO:0051236;establishment of RNA localization;8.63419750585493e-06!GO:0050658;RNA transport;8.63419750585493e-06!GO:0016740;transferase activity;9.00297930270498e-06!GO:0016049;cell growth;9.44781326397501e-06!GO:0006403;RNA localization;9.86953916551878e-06!GO:0006613;cotranslational protein targeting to membrane;9.89552256792831e-06!GO:0006323;DNA packaging;9.96898086565296e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.99161993091577e-06!GO:0065004;protein-DNA complex assembly;1.01723314255875e-05!GO:0006091;generation of precursor metabolites and energy;1.021503226898e-05!GO:0016787;hydrolase activity;1.06472579126071e-05!GO:0000245;spliceosome assembly;1.14740952294842e-05!GO:0000323;lytic vacuole;1.20211146896671e-05!GO:0005764;lysosome;1.20211146896671e-05!GO:0006606;protein import into nucleus;1.34214943320077e-05!GO:0006364;rRNA processing;1.47213095448525e-05!GO:0051789;response to protein stimulus;1.53849018903775e-05!GO:0006986;response to unfolded protein;1.53849018903775e-05!GO:0045454;cell redox homeostasis;1.58860300434928e-05!GO:0032446;protein modification by small protein conjugation;1.6743172931057e-05!GO:0000139;Golgi membrane;1.79399385590257e-05!GO:0016126;sterol biosynthetic process;2.28310309610266e-05!GO:0004298;threonine endopeptidase activity;2.37514570485597e-05!GO:0016567;protein ubiquitination;2.41640699832919e-05!GO:0016310;phosphorylation;2.45558384413223e-05!GO:0016072;rRNA metabolic process;2.49964346374029e-05!GO:0003713;transcription coactivator activity;2.64584359718216e-05!GO:0044440;endosomal part;2.73011189470115e-05!GO:0010008;endosome membrane;2.73011189470115e-05!GO:0030133;transport vesicle;2.74319669136231e-05!GO:0009892;negative regulation of metabolic process;2.82416246484477e-05!GO:0044262;cellular carbohydrate metabolic process;3.03775529343415e-05!GO:0005791;rough endoplasmic reticulum;3.06714133216487e-05!GO:0003697;single-stranded DNA binding;3.07635336318661e-05!GO:0030867;rough endoplasmic reticulum membrane;3.24944988355621e-05!GO:0001558;regulation of cell growth;3.51655015105267e-05!GO:0065007;biological regulation;3.67676205578333e-05!GO:0019867;outer membrane;3.73417628382573e-05!GO:0031968;organelle outer membrane;3.73908708263587e-05!GO:0046474;glycerophospholipid biosynthetic process;4.13876667623233e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.43214325332058e-05!GO:0003724;RNA helicase activity;4.93714789811031e-05!GO:0006082;organic acid metabolic process;5.4054492433862e-05!GO:0019752;carboxylic acid metabolic process;5.51011030885159e-05!GO:0000151;ubiquitin ligase complex;5.71967058769636e-05!GO:0016481;negative regulation of transcription;5.89278735676605e-05!GO:0016563;transcription activator activity;6.47972936832291e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.54028419375487e-05!GO:0046467;membrane lipid biosynthetic process;6.64569098935557e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.79733191806848e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.04027265495335e-05!GO:0043623;cellular protein complex assembly;7.07138445527026e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000105742685098446!GO:0005762;mitochondrial large ribosomal subunit;0.000123816853549967!GO:0000315;organellar large ribosomal subunit;0.000123816853549967!GO:0030036;actin cytoskeleton organization and biogenesis;0.000125155425751838!GO:0048522;positive regulation of cellular process;0.000129517242612682!GO:0016568;chromatin modification;0.000136422704160858!GO:0006260;DNA replication;0.000138545014848782!GO:0051028;mRNA transport;0.000175571481475235!GO:0033116;ER-Golgi intermediate compartment membrane;0.000175845004694985!GO:0005741;mitochondrial outer membrane;0.000179125291103807!GO:0006695;cholesterol biosynthetic process;0.000179637886029856!GO:0043021;ribonucleoprotein binding;0.000194704789192301!GO:0006333;chromatin assembly or disassembly;0.000213933801523224!GO:0051427;hormone receptor binding;0.000214426872868917!GO:0051301;cell division;0.000215531011036044!GO:0005905;coated pit;0.000230904386066175!GO:0019222;regulation of metabolic process;0.000235476610241878!GO:0006612;protein targeting to membrane;0.000245900061879614!GO:0005694;chromosome;0.000318585557132311!GO:0022403;cell cycle phase;0.00032850477199809!GO:0005048;signal sequence binding;0.000343677737154505!GO:0007243;protein kinase cascade;0.000349994933101397!GO:0000087;M phase of mitotic cell cycle;0.000366135798374139!GO:0030663;COPI coated vesicle membrane;0.000372185152536485!GO:0030126;COPI vesicle coat;0.000372185152536485!GO:0035257;nuclear hormone receptor binding;0.000392762680623716!GO:0030029;actin filament-based process;0.000408250089745149!GO:0006414;translational elongation;0.000409226840899045!GO:0009165;nucleotide biosynthetic process;0.000426240254268905!GO:0046489;phosphoinositide biosynthetic process;0.000436351903533847!GO:0007264;small GTPase mediated signal transduction;0.000461725143935616!GO:0007067;mitosis;0.000470025460652297!GO:0019899;enzyme binding;0.000472687954171072!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000480059085073847!GO:0000314;organellar small ribosomal subunit;0.000524457659563717!GO:0005763;mitochondrial small ribosomal subunit;0.000524457659563717!GO:0015630;microtubule cytoskeleton;0.000566441950902374!GO:0008250;oligosaccharyl transferase complex;0.000620149057140281!GO:0016779;nucleotidyltransferase activity;0.000654285783300991!GO:0030137;COPI-coated vesicle;0.000724481993901801!GO:0004576;oligosaccharyl transferase activity;0.000744777465046238!GO:0005885;Arp2/3 protein complex;0.000773282419399279!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000813981348919023!GO:0005769;early endosome;0.000822880359832834!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000829601870600122!GO:0006891;intra-Golgi vesicle-mediated transport;0.000855661680121362!GO:0030027;lamellipodium;0.000868838743018084!GO:0043284;biopolymer biosynthetic process;0.000876086738359396!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000889742807089251!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000890275001117195!GO:0006979;response to oxidative stress;0.000914086130940315!GO:0051920;peroxiredoxin activity;0.000952672908023766!GO:0005813;centrosome;0.00095683069230415!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000961279856895789!GO:0003690;double-stranded DNA binding;0.000961279856895789!GO:0006066;alcohol metabolic process;0.000974017613014671!GO:0045892;negative regulation of transcription, DNA-dependent;0.000998257689975282!GO:0031418;L-ascorbic acid binding;0.00106744030471262!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00109838595924288!GO:0044255;cellular lipid metabolic process;0.00115067585043649!GO:0044427;chromosomal part;0.00119990811552575!GO:0008186;RNA-dependent ATPase activity;0.00121475408825045!GO:0004177;aminopeptidase activity;0.00125864944641981!GO:0030176;integral to endoplasmic reticulum membrane;0.00133503621883628!GO:0006520;amino acid metabolic process;0.00139279916997615!GO:0007050;cell cycle arrest;0.00140359743673416!GO:0016125;sterol metabolic process;0.00151684238809509!GO:0018196;peptidyl-asparagine modification;0.00157297823508562!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00157297823508562!GO:0000785;chromatin;0.00162782950984812!GO:0043681;protein import into mitochondrion;0.00169823575187564!GO:0007010;cytoskeleton organization and biogenesis;0.00172463039686654!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00190154909602958!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00190154909602958!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00190154909602958!GO:0031543;peptidyl-proline dioxygenase activity;0.00191642468755016!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00196043351470853!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00205178491989137!GO:0016044;membrane organization and biogenesis;0.00207973273641301!GO:0048518;positive regulation of biological process;0.0021974024272913!GO:0019843;rRNA binding;0.00220177498903203!GO:0005815;microtubule organizing center;0.00220436217941316!GO:0048500;signal recognition particle;0.00225324284520713!GO:0006650;glycerophospholipid metabolic process;0.00257983663298566!GO:0030134;ER to Golgi transport vesicle;0.00261342326527238!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00261673913910692!GO:0051287;NAD binding;0.00272712586014615!GO:0030659;cytoplasmic vesicle membrane;0.00294374409522155!GO:0051087;chaperone binding;0.00303978579772188!GO:0045893;positive regulation of transcription, DNA-dependent;0.00306839256632326!GO:0004004;ATP-dependent RNA helicase activity;0.00319115530622619!GO:0040008;regulation of growth;0.00322834623562512!GO:0051329;interphase of mitotic cell cycle;0.00324976200470956!GO:0016197;endosome transport;0.00330071036220021!GO:0048471;perinuclear region of cytoplasm;0.00330332772812057!GO:0016860;intramolecular oxidoreductase activity;0.00333193568792487!GO:0031072;heat shock protein binding;0.00341234167996252!GO:0009967;positive regulation of signal transduction;0.00371303533455672!GO:0003729;mRNA binding;0.00374543398168017!GO:0043488;regulation of mRNA stability;0.00383128237755038!GO:0043487;regulation of RNA stability;0.00383128237755038!GO:0003899;DNA-directed RNA polymerase activity;0.00383128237755038!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00386503977997707!GO:0006352;transcription initiation;0.00386503977997707!GO:0030127;COPII vesicle coat;0.00392717434259217!GO:0012507;ER to Golgi transport vesicle membrane;0.00392717434259217!GO:0048487;beta-tubulin binding;0.00396152464009542!GO:0042802;identical protein binding;0.00401007509165828!GO:0019798;procollagen-proline dioxygenase activity;0.00425681041230822!GO:0030521;androgen receptor signaling pathway;0.00438182145866946!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00439748941666518!GO:0006740;NADPH regeneration;0.00440014792194153!GO:0006098;pentose-phosphate shunt;0.00440014792194153!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00455547572718207!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00455547572718207!GO:0051168;nuclear export;0.00459450276918063!GO:0030118;clathrin coat;0.00467314898106627!GO:0007006;mitochondrial membrane organization and biogenesis;0.00472457280837746!GO:0006643;membrane lipid metabolic process;0.00507419869072628!GO:0006334;nucleosome assembly;0.00525224372864331!GO:0042158;lipoprotein biosynthetic process;0.00525224372864331!GO:0065009;regulation of a molecular function;0.00525224372864331!GO:0031902;late endosome membrane;0.00535363977230467!GO:0045792;negative regulation of cell size;0.00540857954730127!GO:0008139;nuclear localization sequence binding;0.00542100856781519!GO:0006807;nitrogen compound metabolic process;0.00542972574074826!GO:0030041;actin filament polymerization;0.00547285908518424!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00551131360737629!GO:0045047;protein targeting to ER;0.00551131360737629!GO:0005869;dynactin complex;0.00559671934391435!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.005797200542645!GO:0015399;primary active transmembrane transporter activity;0.005797200542645!GO:0006402;mRNA catabolic process;0.00582884585626397!GO:0046483;heterocycle metabolic process;0.00582884585626397!GO:0006950;response to stress;0.00588682850600806!GO:0006839;mitochondrial transport;0.00588771297327004!GO:0006497;protein amino acid lipidation;0.00595985069625383!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00595985069625383!GO:0015002;heme-copper terminal oxidase activity;0.00595985069625383!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00595985069625383!GO:0004129;cytochrome-c oxidase activity;0.00595985069625383!GO:0030658;transport vesicle membrane;0.00610681906607554!GO:0035258;steroid hormone receptor binding;0.00613855529023148!GO:0007040;lysosome organization and biogenesis;0.00616487094625772!GO:0030132;clathrin coat of coated pit;0.00619588724518554!GO:0001726;ruffle;0.00623486492074935!GO:0006007;glucose catabolic process;0.00624987026437059!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00628240600652786!GO:0016363;nuclear matrix;0.00631233683619996!GO:0005581;collagen;0.00633340597196024!GO:0005586;collagen type III;0.0063385339438561!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00640604510721336!GO:0019318;hexose metabolic process;0.00672129531121552!GO:0008312;7S RNA binding;0.00678768030197024!GO:0006506;GPI anchor biosynthetic process;0.00678768030197024!GO:0030308;negative regulation of cell growth;0.00686546419807904!GO:0030384;phosphoinositide metabolic process;0.00696185063488438!GO:0051252;regulation of RNA metabolic process;0.00696185063488438!GO:0006417;regulation of translation;0.00703649499108632!GO:0008092;cytoskeletal protein binding;0.00712705373839846!GO:0012506;vesicle membrane;0.00735307675995419!GO:0050662;coenzyme binding;0.00762397606270416!GO:0008047;enzyme activator activity;0.00782431789672583!GO:0051325;interphase;0.00785165300416075!GO:0044433;cytoplasmic vesicle part;0.00788175967302554!GO:0015631;tubulin binding;0.00820354786337797!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0085156785907815!GO:0000049;tRNA binding;0.00887515729538198!GO:0005996;monosaccharide metabolic process;0.00888310725941809!GO:0031497;chromatin assembly;0.00888527166717945!GO:0045941;positive regulation of transcription;0.00893737031842555!GO:0009308;amine metabolic process;0.00917769665989449!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00935517282222802!GO:0006626;protein targeting to mitochondrion;0.00948581748985639!GO:0005774;vacuolar membrane;0.00962880145325881!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00967319752210752!GO:0006383;transcription from RNA polymerase III promoter;0.00967832679911844!GO:0008180;signalosome;0.00978360013278207!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00980083678844255!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00980083678844255!GO:0006720;isoprenoid metabolic process;0.0101501840364995!GO:0000096;sulfur amino acid metabolic process;0.0101887264452685!GO:0006790;sulfur metabolic process;0.0102429511907182!GO:0030880;RNA polymerase complex;0.0103858309267327!GO:0017166;vinculin binding;0.0106813093043293!GO:0006505;GPI anchor metabolic process;0.0106813093043293!GO:0031625;ubiquitin protein ligase binding;0.0107052299361201!GO:0006818;hydrogen transport;0.0107400488537859!GO:0006519;amino acid and derivative metabolic process;0.010913833046168!GO:0015992;proton transport;0.0112544988855082!GO:0000059;protein import into nucleus, docking;0.0114260036654198!GO:0022890;inorganic cation transmembrane transporter activity;0.0115132035692489!GO:0016408;C-acyltransferase activity;0.0117289392814803!GO:0033673;negative regulation of kinase activity;0.0117289392814803!GO:0006469;negative regulation of protein kinase activity;0.0117289392814803!GO:0032984;macromolecular complex disassembly;0.0117813143412163!GO:0000279;M phase;0.0121693569937814!GO:0050811;GABA receptor binding;0.01252869057829!GO:0030145;manganese ion binding;0.0125673380158104!GO:0007033;vacuole organization and biogenesis;0.0129327808229235!GO:0006739;NADP metabolic process;0.0129882960525641!GO:0030660;Golgi-associated vesicle membrane;0.0130321910254207!GO:0006595;polyamine metabolic process;0.0131108029099941!GO:0030032;lamellipodium biogenesis;0.0133311631336806!GO:0008632;apoptotic program;0.0141782302421316!GO:0000339;RNA cap binding;0.0142476932735912!GO:0006892;post-Golgi vesicle-mediated transport;0.0142575051937139!GO:0016251;general RNA polymerase II transcription factor activity;0.0143872012627991!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0143872012627991!GO:0008652;amino acid biosynthetic process;0.0146225116421012!GO:0008203;cholesterol metabolic process;0.0146225116421012!GO:0051348;negative regulation of transferase activity;0.0147139252628946!GO:0006629;lipid metabolic process;0.0149519552926829!GO:0006644;phospholipid metabolic process;0.0149519552926829!GO:0031323;regulation of cellular metabolic process;0.0150862601849125!GO:0005637;nuclear inner membrane;0.0151772565613858!GO:0051128;regulation of cellular component organization and biogenesis;0.0151991121733071!GO:0006769;nicotinamide metabolic process;0.0153948364733368!GO:0006607;NLS-bearing substrate import into nucleus;0.0155360633968729!GO:0003756;protein disulfide isomerase activity;0.0156847952556855!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0156847952556855!GO:0006509;membrane protein ectodomain proteolysis;0.0158056211445458!GO:0033619;membrane protein proteolysis;0.0158056211445458!GO:0051539;4 iron, 4 sulfur cluster binding;0.0159123789972754!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0163504563023385!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0163504563023385!GO:0003711;transcription elongation regulator activity;0.0165745933564651!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0169926613891282!GO:0006672;ceramide metabolic process;0.0170959054603546!GO:0030518;steroid hormone receptor signaling pathway;0.0171086593868569!GO:0051101;regulation of DNA binding;0.0181531626468533!GO:0001516;prostaglandin biosynthetic process;0.0186200034481031!GO:0046457;prostanoid biosynthetic process;0.0186200034481031!GO:0003746;translation elongation factor activity;0.0189200465519625!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0190904609086062!GO:0000428;DNA-directed RNA polymerase complex;0.0190904609086062!GO:0033559;unsaturated fatty acid metabolic process;0.0191823351547003!GO:0006636;unsaturated fatty acid biosynthetic process;0.0191823351547003!GO:0016407;acetyltransferase activity;0.0193784367347378!GO:0005862;muscle thin filament tropomyosin;0.0195539824608989!GO:0050681;androgen receptor binding;0.0195822287854807!GO:0043241;protein complex disassembly;0.0196269721833661!GO:0009112;nucleobase metabolic process;0.0197118495582629!GO:0003702;RNA polymerase II transcription factor activity;0.0199808251544291!GO:0007034;vacuolar transport;0.0200054546949457!GO:0006749;glutathione metabolic process;0.0200054546949457!GO:0046519;sphingoid metabolic process;0.0206407698788197!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0211008431831085!GO:0043022;ribosome binding;0.02111481475164!GO:0035035;histone acetyltransferase binding;0.0214414150084096!GO:0031124;mRNA 3'-end processing;0.0214414150084096!GO:0008286;insulin receptor signaling pathway;0.0214414150084096!GO:0045045;secretory pathway;0.0219287110386161!GO:0051540;metal cluster binding;0.0219709898141823!GO:0051536;iron-sulfur cluster binding;0.0219709898141823!GO:0006401;RNA catabolic process;0.0228702227094359!GO:0005832;chaperonin-containing T-complex;0.0231718818781677!GO:0016272;prefoldin complex;0.0233654384728631!GO:0044437;vacuolar part;0.0235087759169111!GO:0008097;5S rRNA binding;0.0241928399255235!GO:0005765;lysosomal membrane;0.0243924730468098!GO:0030119;AP-type membrane coat adaptor complex;0.0244407010746399!GO:0016584;nucleosome positioning;0.0247852171286731!GO:0051098;regulation of binding;0.0252204156361449!GO:0008154;actin polymerization and/or depolymerization;0.0255661091441311!GO:0005819;spindle;0.0257162219657897!GO:0031901;early endosome membrane;0.0257688130677725!GO:0008234;cysteine-type peptidase activity;0.025816865516444!GO:0005665;DNA-directed RNA polymerase II, core complex;0.025998675201213!GO:0006144;purine base metabolic process;0.026340575646568!GO:0043492;ATPase activity, coupled to movement of substances;0.0265578262604662!GO:0006733;oxidoreduction coenzyme metabolic process;0.0266343981786726!GO:0048037;cofactor binding;0.0270167431674504!GO:0000209;protein polyubiquitination;0.0271497111992381!GO:0005684;U2-dependent spliceosome;0.0273817932058773!GO:0045926;negative regulation of growth;0.0276991232302798!GO:0008033;tRNA processing;0.027732175708248!GO:0022411;cellular component disassembly;0.0279569531450232!GO:0006984;ER-nuclear signaling pathway;0.0286127991819861!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0286514154204417!GO:0000287;magnesium ion binding;0.0286979632109049!GO:0000082;G1/S transition of mitotic cell cycle;0.028847034385016!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0290398219911878!GO:0005975;carbohydrate metabolic process;0.0291121364377436!GO:0043624;cellular protein complex disassembly;0.0292793226431677!GO:0047485;protein N-terminus binding;0.0297938784908822!GO:0006767;water-soluble vitamin metabolic process;0.0301015771569157!GO:0005096;GTPase activator activity;0.0302080386495483!GO:0044452;nucleolar part;0.0303518294588754!GO:0031529;ruffle organization and biogenesis;0.0308822594557042!GO:0006778;porphyrin metabolic process;0.0319172915457483!GO:0033013;tetrapyrrole metabolic process;0.0319172915457483!GO:0009081;branched chain family amino acid metabolic process;0.0321445119694771!GO:0006518;peptide metabolic process;0.032810494827181!GO:0006376;mRNA splice site selection;0.0329752224180174!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0329752224180174!GO:0007021;tubulin folding;0.0329817402725143!GO:0022406;membrane docking;0.0329817402725143!GO:0048278;vesicle docking;0.0329817402725143!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0334995888439589!GO:0048468;cell development;0.0335763794957607!GO:0030833;regulation of actin filament polymerization;0.0335763794957607!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0341564700527457!GO:0031326;regulation of cellular biosynthetic process;0.0341595507578163!GO:0009889;regulation of biosynthetic process;0.0346163268643338!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0357486340075521!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0357486340075521!GO:0032906;transforming growth factor-beta2 production;0.0358481438513025!GO:0032909;regulation of transforming growth factor-beta2 production;0.0358481438513025!GO:0046365;monosaccharide catabolic process;0.0360477790532015!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0370423642247297!GO:0030131;clathrin adaptor complex;0.0371775035383786!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0386875047021219!GO:0008147;structural constituent of bone;0.0392238572576425!GO:0032507;maintenance of cellular protein localization;0.0393477200842224!GO:0004680;casein kinase activity;0.0395110570159954!GO:0009116;nucleoside metabolic process;0.0408852222417639!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0408852222417639!GO:0051270;regulation of cell motility;0.0413268466905271!GO:0018202;peptidyl-histidine modification;0.0417061763371108!GO:0008022;protein C-terminus binding;0.0422095732384615!GO:0051052;regulation of DNA metabolic process;0.0425926591679613!GO:0005801;cis-Golgi network;0.0436897002619972!GO:0004674;protein serine/threonine kinase activity;0.0438517282508556!GO:0043086;negative regulation of catalytic activity;0.0439188342448843!GO:0006302;double-strand break repair;0.0439188342448843!GO:0006904;vesicle docking during exocytosis;0.0439816009300315!GO:0030100;regulation of endocytosis;0.0444137387359829!GO:0001725;stress fiber;0.0444731881414784!GO:0032432;actin filament bundle;0.0444731881414784!GO:0051235;maintenance of localization;0.045279516438713!GO:0003923;GPI-anchor transamidase activity;0.0454247559155004!GO:0016255;attachment of GPI anchor to protein;0.0454247559155004!GO:0042765;GPI-anchor transamidase complex;0.0454247559155004!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0454820368072996!GO:0006779;porphyrin biosynthetic process;0.0454820368072996!GO:0033014;tetrapyrrole biosynthetic process;0.0454820368072996!GO:0003684;damaged DNA binding;0.0456264963147642!GO:0019362;pyridine nucleotide metabolic process;0.0464973456030265!GO:0006611;protein export from nucleus;0.0465334167568968!GO:0006118;electron transport;0.0472541581353757!GO:0015036;disulfide oxidoreductase activity;0.0473984105524978!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0473984105524978!GO:0005784;translocon complex;0.0474485899104629!GO:0006897;endocytosis;0.0477493971494663!GO:0010324;membrane invagination;0.0477493971494663!GO:0006338;chromatin remodeling;0.047859685266757!GO:0006350;transcription;0.0490340943639613!GO:0005100;Rho GTPase activator activity;0.0491170884900278!GO:0008299;isoprenoid biosynthetic process;0.0497386888097301
|sample_id=11618
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=liver
|top_motifs=NKX3-1:2.51647149534;TAL1_TCF{3,4,12}:1.88807786579;MYBL2:1.79258057216;HIF1A:1.68609456695;HSF1,2:1.68264733394;TEF:1.52461256342;SRF:1.45019896965;TFAP4:1.43626613243;HMGA1,2:1.43497346896;TLX1..3_NFIC{dimer}:1.4101030037;GLI1..3:1.39399335328;MAFB:1.33501093532;ZNF238:1.24264776634;HAND1,2:1.23863870193;NKX2-2,8:1.17661131447;NR3C1:1.17163133262;EBF1:1.14436586106;LHX3,4:1.05182437316;EN1,2:1.04825477313;CRX:1.02991186985;FOX{I1,J2}:0.998985845232;FOXL1:0.971544458378;HOX{A5,B5}:0.95971862341;AHR_ARNT_ARNT2:0.958188451139;TEAD1:0.950268526026;AIRE:0.941948185797;ZNF423:0.926814604542;PAX4:0.916160469571;TOPORS:0.913926889962;ALX4:0.899381319762;HES1:0.883730926817;UFEwm:0.858916282639;ATF6:0.849150759568;GTF2A1,2:0.81244815414;NR6A1:0.787799330993;PATZ1:0.778767285034;NKX2-1,4:0.736950084392;RXRA_VDR{dimer}:0.722301171685;ESR1:0.707659032473;MAZ:0.694532465363;EVI1:0.676090579743;ZNF384:0.655371718986;ZIC1..3:0.652982217328;SMAD1..7,9:0.639082436788;IKZF1:0.63394525682;NKX6-1,2:0.62320093801;KLF4:0.607140865024;SOX5:0.577683047492;GZF1:0.57029776325;GTF2I:0.56636327961;FOX{D1,D2}:0.542758713131;NFATC1..3:0.538351820364;PAX5:0.501101878544;DBP:0.497526616869;RXR{A,B,G}:0.47583622726;GFI1B:0.444358518427;BPTF:0.419435200491;HOX{A4,D4}:0.413807069875;AR:0.370438645937;CDC5L:0.33848101316;TFCP2:0.333899552716;GATA4:0.303669763435;SP1:0.2875007681;XBP1:0.286245284043;HNF4A_NR2F1,2:0.284853647646;FOXD3:0.244950761001;TBX4,5:0.243729033965;NFE2L2:0.242321816396;RBPJ:0.22900105385;HLF:0.228550855934;MTE{core}:0.226423112796;NFE2L1:0.225626885884;STAT5{A,B}:0.218408153636;FOXA2:0.21730187576;CEBPA,B_DDIT3:0.217232772474;MYFfamily:0.217040813975;MZF1:0.215044365872;FOXM1:0.214031130944;HNF1A:0.208489246216;SOX17:0.207838275539;TBP:0.192240092351;ZBTB6:0.190462656787;CDX1,2,4:0.18689909712;PAX1,9:0.165265077095;ADNP_IRX_SIX_ZHX:0.161407789716;FOX{F1,F2,J1}:0.143761508869;ATF2:0.142581381483;RREB1:0.121858082598;PRDM1:0.11588677448;TP53:0.0923890230632;FOXP3:0.088358954756;MEF2{A,B,C,D}:0.0831112470784;JUN:0.0638720216279;NANOG:0.0600886523338;NANOG{mouse}:0.0501452144277;HIC1:0.0387973433627;ARID5B:0.00365810337814;RORA:-0.00260808245273;STAT1,3:-0.0132710906377;NFE2:-0.0227003149227;FOXO1,3,4:-0.0252542873557;NHLH1,2:-0.0289185725101;HOXA9_MEIS1:-0.0351118608565;YY1:-0.0437229307253;PAX6:-0.0838959855312;PBX1:-0.0916942145486;PAX8:-0.106744648428;PRRX1,2:-0.113648664989;EGR1..3:-0.11654437041;ATF4:-0.118084386352;XCPE1{core}:-0.12546123177;ZFP161:-0.126881294224;PPARG:-0.134678523318;RFX1:-0.134965909803;STAT2,4,6:-0.135562049325;NFIX:-0.144928419277;IRF1,2:-0.151750896141;TFAP2{A,C}:-0.151777117491;MTF1:-0.167540514455;FOXP1:-0.186623914151;FOS_FOS{B,L1}_JUN{B,D}:-0.189173583607;NR5A1,2:-0.191764047539;PAX3,7:-0.193607132228;FOXN1:-0.200629611718;MED-1{core}:-0.206542279048;POU5F1:-0.20663529509;NFY{A,B,C}:-0.211808267965;NR1H4:-0.213286801009;TGIF1:-0.250635750813;TFAP2B:-0.250769828321;MYB:-0.252356691563;RUNX1..3:-0.253850336734;LEF1_TCF7_TCF7L1,2:-0.254151770089;FOSL2:-0.255726062744;GFI1:-0.258527590283;ZNF143:-0.259341967303;bHLH_family:-0.264841984682;ATF5_CREB3:-0.27174367258;REST:-0.28298180001;GCM1,2:-0.289821604351;NFKB1_REL_RELA:-0.303801641588;CUX2:-0.335095420185;HMX1:-0.340449150964;ZBTB16:-0.34724208004;SREBF1,2:-0.347622866735;BACH2:-0.353472882688;POU1F1:-0.365298222763;NRF1:-0.382217812866;ELK1,4_GABP{A,B1}:-0.390390942415;RFX2..5_RFXANK_RFXAP:-0.396056840627;LMO2:-0.397044515127;GATA6:-0.400506089876;PAX2:-0.401599153451;POU6F1:-0.411578814015;IRF7:-0.412182214001;EP300:-0.417462491907;ZNF148:-0.421518001825;NKX3-2:-0.422085233296;ETS1,2:-0.451385627958;ESRRA:-0.466708348775;NKX2-3_NKX2-5:-0.496217853625;TFDP1:-0.521371025874;SPIB:-0.534522574267;NFIL3:-0.540352343362;HBP1_HMGB_SSRP1_UBTF:-0.575987508987;CREB1:-0.581609237447;T:-0.588164595272;ALX1:-0.608431055664;E2F1..5:-0.612208991432;DMAP1_NCOR{1,2}_SMARC:-0.615335713798;SOX2:-0.632354579873;VSX1,2:-0.63547706913;FOXQ1:-0.636002417754;ELF1,2,4:-0.636979138732;ONECUT1,2:-0.645422112224;SPZ1:-0.678880227087;SPI1:-0.702914890979;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.733723900248;ZEB1:-0.752891921275;SNAI1..3:-0.810435404467;BREu{core}:-0.817942353673;TLX2:-0.83518681974;HOX{A6,A7,B6,B7}:-0.844075644218;IKZF2:-0.991035818874;POU3F1..4:-0.998823561716;SOX{8,9,10}:-1.0248354458;POU2F1..3:-1.06917343107;OCT4_SOX2{dimer}:-1.1188951509;PDX1:-1.14121249309;PITX1..3:-1.24432020507;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.43109239122;MYOD1:-1.77904063308
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11618-122A7;search_select_hide=table117:FF:11618-122A7
}}
}}

Latest revision as of 18:12, 4 June 2020

Name:Mesenchymal Stem Cells - hepatic, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12730
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2460
catalog numberSC7525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004979
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12730 CAGE DRX008356 DRR009228
Accession ID Hg19

Library idBAMCTSS
CNhs12730 DRZ000653 DRZ002038
Accession ID Hg38

Library idBAMCTSS
CNhs12730 DRZ012003 DRZ013388
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.00104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0931
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.155
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.234
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0819
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0223
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.109
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.524
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.00992
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.109
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.306
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0144
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.137
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.498
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.109
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00936
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0532
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0369
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.269
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.108
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.058
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.058
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.729
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.609
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.587
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.632
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.331
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12730

Jaspar motifP-value
MA0002.20.0755
MA0003.10.731
MA0004.10.00504
MA0006.10.89
MA0007.10.0486
MA0009.10.934
MA0014.10.53
MA0017.10.421
MA0018.20.0102
MA0019.10.378
MA0024.12.97177e-4
MA0025.10.0105
MA0027.10.611
MA0028.10.00319
MA0029.10.329
MA0030.10.998
MA0031.10.456
MA0035.20.633
MA0038.10.865
MA0039.20.0195
MA0040.10.0168
MA0041.10.662
MA0042.10.284
MA0043.10.294
MA0046.10.514
MA0047.20.95
MA0048.10.148
MA0050.10.00758
MA0051.10.00609
MA0052.10.219
MA0055.10.909
MA0057.10.89
MA0058.14.85137e-4
MA0059.10.0793
MA0060.10.00365
MA0061.10.0435
MA0062.21.59895e-13
MA0065.20.853
MA0066.10.369
MA0067.10.0961
MA0068.10.269
MA0069.10.2
MA0070.10.438
MA0071.10.428
MA0072.10.717
MA0073.10.233
MA0074.10.483
MA0076.11.24394e-6
MA0077.10.217
MA0078.10.835
MA0079.20.197
MA0080.26.22075e-10
MA0081.10.00118
MA0083.13.3023e-7
MA0084.10.102
MA0087.10.207
MA0088.10.879
MA0090.11.73366e-6
MA0091.10.00485
MA0092.10.0202
MA0093.10.00824
MA0099.26.76742e-5
MA0100.10.472
MA0101.10.00306
MA0102.20.512
MA0103.13.06149e-4
MA0104.20.0217
MA0105.10.36
MA0106.10.976
MA0107.10.0017
MA0108.28.38459e-4
MA0111.10.826
MA0112.20.0264
MA0113.10.0145
MA0114.10.852
MA0115.10.0257
MA0116.10.234
MA0117.10.975
MA0119.18.37147e-4
MA0122.10.546
MA0124.10.495
MA0125.10.721
MA0131.10.652
MA0135.10.0115
MA0136.18.16308e-10
MA0137.20.512
MA0138.20.984
MA0139.10.833
MA0140.10.781
MA0141.10.481
MA0142.10.0218
MA0143.10.469
MA0144.10.979
MA0145.10.0417
MA0146.10.144
MA0147.10.0377
MA0148.10.411
MA0149.10.577
MA0150.10.199
MA0152.10.0631
MA0153.10.96
MA0154.10.63
MA0155.10.463
MA0156.12.80454e-12
MA0157.10.724
MA0159.10.818
MA0160.10.179
MA0162.10.238
MA0163.10.105
MA0164.10.708
MA0258.10.298
MA0259.10.69



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12730

Novel motifP-value
10.878
100.864
1000.275
1010.967
1020.05
1030.179
1040.547
1050.914
1060.262
1070.0899
1080.962
1090.45
110.777
1100.959
1110.618
1120.895
1130.109
1140.438
1150.264
1160.19
1170.474
1180.535
1190.878
120.326
1200.674
1210.243
1220.0151
1230.0353
1240.644
1250.118
1260.844
1270.709
1280.302
1290.255
130.534
1300.11
1310.204
1320.218
1330.454
1340.32
1350.574
1360.844
1370.143
1380.29
1390.287
140.419
1400.161
1410.371
1420.411
1430.713
1440.383
1450.768
1460.873
1470.123
1480.871
1493.84817e-4
150.267
1500.405
1510.647
1520.126
1530.472
1540.69
1550.207
1560.26
1570.292
1580.967
1590.161
160.0219
1600.34
1610.565
1620.0951
1630.0367
1640.058
1650.897
1660.0811
1670.258
1680.637
1690.0185
170.888
180.493
190.00388
20.249
200.622
210.167
220.0488
230.184
240.446
250.0595
260.815
270.825
280.0732
290.324
30.62
300.629
310.279
327.30905e-16
330.863
340.656
350.454
360.369
370.599
380.514
390.449
40.478
400.708
410.0197
420.546
430.557
440.956
450.863
460.547
470.827
480.761
490.348
50.468
500.349
510.4
520.955
530.123
540.857
550.727
560.879
570.855
580.468
590.667
60.973
600.854
610.821
620.814
630.439
640.738
650.394
660.355
670.404
680.77
690.139
70.526
700.642
710.194
720.883
730.363
740.552
750.95
760.538
770.141
780.809
790.0262
80.255
800.113
810.71
820.802
830.359
840.121
850.0175
860.722
870.0308
880.118
890.427
90.437
900.824
910.81
920.239
930.153
940.652
950.929
960.654
970.573
980.343
990.0214



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12730


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002195 (hepatic stem cell)
0002571 (hepatic mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000098 (human hepatic mesenchymal stem cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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