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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004807
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004807
|accession_numbers=CAGE;DRX008366;DRR009238;DRZ000663;DRZ002048;DRZ012013;DRZ013398
|accession_numbers_RNASeq=sRNA-Seq;DRX037132;DRR041498;DRZ007140
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000081,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000081,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:126070769..126070801,+!p1@HEY2!2.21!182.63!HEY2;;chr2:45236540..45236577,-!p1@SIX2!2.15!138.98!SIX2;;chr7:19157248..19157268,-!p1@TWIST1!1.69!128.65!TWIST1;;chr14:61116183..61116208,-!p1@SIX1!1.65!160.81!SIX1;;chr6:19837592..19837621,+!p1@ID4!1.61!230.87!ID4;;chr4:81118647..81118666,+!p1@PRDM8!1.60!50.54!PRDM8;;chr20:30433396..30433414,-!p1@FOXS1!1.54!33.31!FOXS1;;chr5:158526917..158526932,-!p1@EBF1!1.53!79.25!EBF1;;chr2:45236579..45236596,-!p2@SIX2!1.46!27.57!SIX2;;chr6:1389789..1389821,+!p1@FOXF2!1.38!31.01!FOXF2;;chr9:132427883..132427951,+!p2@PRRX2!1.38!22.97!PRRX2;;chr6:126070748..126070768,+!p2@HEY2!1.36!21.82!HEY2;;chr22:19748231..19748317,+!p1@TBX1!1.36!21.82!TBX1;;chr9:132427972..132428056,+!p1@PRRX2!1.35!27.57!PRRX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!101.08!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.82!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.53!ZBED1;;chr15:96874145..96874166,+!p7@NR2F2!1.28!34.46!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!1.25!24.12!NR2F2;;chr1:170633348..170633399,+!p2@PRRX1!1.25!22.97!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!1.20!21.82!NFIX;;chr7:44143925..44143970,+!p1@AEBP1!1.14!281.41!AEBP1;;chr10:63809013..63809041,+!p3@ARID5B!1.14!71.21!ARID5B;;chr7:35293685..35293718,-!p1@TBX20!1.13!12.63!TBX20;;chr16:86600426..86600441,+!p1@FOXC2!1.12!29.86!FOXC2;;chr1:25256756..25256774,-!p1@RUNX3!1.10!21.82!RUNX3;;chr6:1610293..1610310,+!p1@FOXC1!1.08!18.38!FOXC1;;chr14:37131058..37131139,+!p1@PAX9!1.05!10.34!PAX9;;chr15:96874244..96874259,+!p5@NR2F2!1.04!24.12!NR2F2;;chr1:170633262..170633285,+!p3@PRRX1!1.04!11.49!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!1.02!24.12!TWIST1;;chr1:170632723..170632739,+!p8@PRRX1!1.01!9.19!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!1.01!9.19!HEYL;;chr16:31076332..31076388,-!p3@ZNF668!1.01!9.19!ZNF668;;chr22:19746969..19746987,+!p2@TBX1!1.01!9.19!TBX1;;chr2:5832508..5832524,+!p1@SOX11!1.01!9.19!SOX11;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!14.93!CREB3L1;;chr5:158526459..158526481,-!p2@EBF1!0.98!11.49!EBF1;;chr15:100106670..100106697,+!p4@MEF2A!0.97!13.78!MEF2A;;chr1:170632959..170632987,+!p4@PRRX1!0.97!9.19!PRRX1;;chr15:96873984..96873999,+!p3@NR2F2!0.96!62.03!NR2F2;;chr18:19749541..19749557,+!p1@GATA6!0.96!26.42!GATA6;;chr2:45236829..45236840,-!p3@SIX2!0.96!8.04!SIX2;;chr5:2751762..2751784,-!p1@IRX2!0.96!8.04!IRX2;;chr7:44143978..44143989,+!p2@AEBP1!0.95!14.93!AEBP1;;chr8:72756267..72756296,-!p4@MSC!0.94!11.49!MSC;;chr1:935467..935484,-!p1@HES4!0.92!33.31!HES4;;chr2:74229812..74229867,+!p1@TET3!0.91!18.38!TET3;;chr8:72756667..72756736,-!p2@MSC!0.91!11.49!MSC;;chr14:61116168..61116180,-!p2@SIX1!0.90!8.04!SIX1;;chr11:125034605..125034636,+!p2@PKNOX2!0.90!6.89!PKNOX2;;chr17:46132044..46132080,+!p4@NFE2L1!0.90!6.89!NFE2L1;;chr19:13135582..13135600,+!p3@NFIX!0.90!6.89!NFIX;;chr1:170632250..170632277,+!p7@PRRX1!0.90!6.89!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.90!6.89!PRRX1;;chr5:72744594..72744609,-!p1@FOXD1!0.87!31.01!FOXD1;;chr15:42749722..42749739,-!p2@ZFP106!0.86!11.49!ZFP106;;chr12:80085061..80085119,-!p6@PAWR!0.86!10.34!PAWR;;chr2:19558373..19558392,-!p1@OSR1!0.84!17.23!OSR1;;chr7:113726357..113726443,+!p1@FOXP2!0.83!10.34!FOXP2;;chr7:137686763..137686784,-!p5@CREB3L2!0.83!10.34!CREB3L2;;chr15:96869222..96869251,+!p18@NR2F2!0.83!6.89!NR2F2;;chr5:158524625..158524669,-!p6@EBF1!0.83!5.74!EBF1;;chr5:158527104..158527135,-!p4@EBF1!0.83!5.74!EBF1;;chr5:158527139..158527161,-!p5@EBF1!0.83!5.74!EBF1;;chr2:100721881..100721904,-!p6@AFF3!0.83!5.74!AFF3;;chr13:100634031..100634045,+!p1@ZIC2!0.83!5.74!ZIC2;;chr15:96874927..96874938,+!p8@NR2F2!0.82!12.63!NR2F2;;chr2:200323414..200323455,-!p1@SATB2!0.82!12.63!SATB2;;chr10:63809090..63809097,+!p7@ARID5B!0.82!8.04!ARID5B;;chr10:77161504..77161530,-!p1@ZNF503!0.81!79.25!ZNF503;;chr16:54964740..54964789,+!p1@IRX5!0.81!8.04!IRX5;;chr2:191878874..191878938,-!p1@STAT1!0.79!306.68!STAT1;;chr10:77161650..77161661,-!p4@ZNF503!0.76!6.89!ZNF503;;chr17:46126136..46126152,+!p1@NFE2L1!0.75!260.74!NFE2L1;;chr19:13106214..13106382,+!p1@NFIX!0.75!118.31!NFIX;;chr7:17338266..17338282,+!p1@AHR!0.75!55.13!AHR;;chr15:96874012..96874042,+!p2@NR2F2!0.75!45.94!NR2F2;;chr5:321810..321877,+!p1@AHRR!0.75!16.08!AHRR;;chrX:66763856..66763896,+!p1@AR!0.75!6.89!AR;;chr15:96869292..96869320,+!p15@NR2F2!0.75!6.89!NR2F2;;chr16:86600870..86600921,+!p2@FOXC2!0.75!4.59!FOXC2;;chr6:1389871..1389876,+!p4@FOXF2!0.75!4.59!FOXF2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.75!4.59!RUNX1T1;;chr11:16627528..16627550,-!p7@SOX6!0.75!4.59!SOX6;;chr11:16629261..16629284,-!p1@SOX6!0.75!4.59!SOX6;;chr11:46299443..46299459,+!p4@CREB3L1!0.75!4.59!CREB3L1;;chr13:100634004..100634025,+!p2@ZIC2!0.75!4.59!ZIC2;;chr13:100634088..100634099,+!p5@ZIC2!0.75!4.59!ZIC2;;chr14:24020596..24020624,-!p3@ZFHX2!0.75!4.59!ZFHX2;;chr1:119530636..119530653,-!p2@TBX15!0.75!4.59!TBX15;;chr3:147111231..147111281,+!p3@ZIC1!0.75!4.59!ZIC1;;chr3:71630980..71631110,-!p3@FOXP1!0.74!17.23!FOXP1;;chr5:72744562..72744573,-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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
|ffid_belonging_in_development=CL:0000134
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|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor2.CNhs12105.11629-122B9.hg38.nobarcode.ctss.bed.gz
|id=FF:11629-122B9
|id=FF:11629-122B9
|is_a=EFO:0002091;;FF:0000117
|is_a=EFO:0002091;;FF:0000117
|is_obsolete=
|is_obsolete=
|library_id=CNhs12105
|library_id_phase_based=2:CNhs12105
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11629
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CAGATC.11629
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11629
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CAGATC.11629
|name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2
|name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
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|profile_hcage=CNhs12105,LSID839,release011,COMPLETED
|profile_hcage=CNhs12105,LSID839,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 85: Line 106:
|top_motifs=GLI1..3:1.77150357484;TAL1_TCF{3,4,12}:1.71008489742;NR3C1:1.64196647181;IKZF1:1.49272813193;EVI1:1.44640478685;NKX3-1:1.34523445997;PPARG:1.33285650589;ZNF423:1.31598869381;HMX1:1.28688851508;ESR1:1.17633516542;ZIC1..3:1.10849651318;SMAD1..7,9:1.0414307567;HMGA1,2:1.03483651426;ONECUT1,2:1.02251184649;MAFB:0.994017294396;UFEwm:0.990819781671;TFAP4:0.978090333575;EBF1:0.885816012168;TEAD1:0.880632279778;RXRA_VDR{dimer}:0.871984776029;NFIX:0.869814225215;SREBF1,2:0.864627460945;ZBTB6:0.846421884832;LHX3,4:0.835451916607;NFE2L1:0.8013033483;ALX4:0.778265684799;HOX{A4,D4}:0.733426760845;GTF2I:0.727066429842;KLF4:0.715304305137;NR6A1:0.660365441029;EN1,2:0.655024402606;GFI1B:0.640963734275;SRF:0.636655237986;GTF2A1,2:0.628706907776;HAND1,2:0.610108692944;TBX4,5:0.592963931265;AIRE:0.586999595483;SPZ1:0.581805475366;TLX1..3_NFIC{dimer}:0.576731922381;MYBL2:0.54004204073;MAZ:0.534150244472;TFCP2:0.489607231253;ZNF384:0.489186941152;HOX{A5,B5}:0.486722006492;HLF:0.485369923937;PRDM1:0.484079832799;TP53:0.469596480964;FOXA2:0.466001380795;bHLH_family:0.443072406148;VSX1,2:0.442593952895;MZF1:0.429513764685;BPTF:0.420793383274;PATZ1:0.420504521135;GZF1:0.418590097328;TOPORS:0.415638294392;XBP1:0.403177763248;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.384624499807;RXR{A,B,G}:0.382897577454;NANOG{mouse}:0.376672043992;HIF1A:0.373797072583;TFAP2{A,C}:0.372319849507;ZNF238:0.367385210551;NKX2-1,4:0.336681636582;FOX{F1,F2,J1}:0.316459312781;GATA4:0.315848558975;RREB1:0.312909454712;SOX17:0.311421831769;NFE2L2:0.310679285884;TEF:0.306878148975;ARID5B:0.29982914014;FOXL1:0.298392551245;ZNF148:0.29471872478;DBP:0.267974448437;AHR_ARNT_ARNT2:0.266717399286;PDX1:0.221054759753;ESRRA:0.14710958284;NFATC1..3:0.146102803532;MTE{core}:0.121107690693;HIC1:0.114965872595;ATF4:0.0977136363018;RBPJ:0.0935580816525;MEF2{A,B,C,D}:0.0891353095263;LMO2:0.0862189506234;CDX1,2,4:0.0441760798462;ATF6:0.0301304568343;NKX2-2,8:0.029402917129;FOXO1,3,4:0.0239533396739;XCPE1{core}:0.0158546263995;NR5A1,2:0.00889624476662;PAX3,7:-0.00763929796297;TFAP2B:-0.0143473806864;SP1:-0.0162650271092;SOX2:-0.0226883517147;ZFP161:-0.0239209711654;LEF1_TCF7_TCF7L1,2:-0.0386213253412;HNF1A:-0.0659882913428;STAT2,4,6:-0.0845169155524;ZBTB16:-0.0953691960632;NHLH1,2:-0.103416089274;NRF1:-0.109157482534;RFX1:-0.110362388018;EP300:-0.113438995152;BACH2:-0.115120669012;REST:-0.122482176034;STAT1,3:-0.14492890301;NKX3-2:-0.146848066158;POU5F1:-0.147425906194;MYFfamily:-0.1498280153;PAX5:-0.155688666565;CREB1:-0.160625139123;FOSL2:-0.164927590627;HNF4A_NR2F1,2:-0.170845657175;POU3F1..4:-0.174988135343;SNAI1..3:-0.187155532119;ZNF143:-0.210587830462;MTF1:-0.21101893813;HES1:-0.212651563326;YY1:-0.215819563907;NR1H4:-0.222698981478;PAX6:-0.243326970161;CRX:-0.248192961596;HSF1,2:-0.254148045052;FOXP3:-0.258731053938;MED-1{core}:-0.259516628878;IKZF2:-0.259925388519;FOS_FOS{B,L1}_JUN{B,D}:-0.260205815068;GATA6:-0.269460634064;PAX4:-0.276631404544;CEBPA,B_DDIT3:-0.282454182336;FOXM1:-0.291506909858;NFKB1_REL_RELA:-0.318481454746;IRF1,2:-0.341317713128;GFI1:-0.341559554753;FOXQ1:-0.347051597103;STAT5{A,B}:-0.353498732309;ELK1,4_GABP{A,B1}:-0.37161342964;PAX1,9:-0.393343067841;NFE2:-0.394031076319;AR:-0.406641741369;ALX1:-0.412402849274;PAX2:-0.427172868885;NKX6-1,2:-0.442647148651;DMAP1_NCOR{1,2}_SMARC:-0.464645008653;FOX{D1,D2}:-0.47160303948;MYB:-0.475753471442;SOX{8,9,10}:-0.481231221015;PRRX1,2:-0.487204504963;EGR1..3:-0.526107005666;PAX8:-0.541342572345;RUNX1..3:-0.543297326486;RFX2..5_RFXANK_RFXAP:-0.551726456439;TBP:-0.554292480026;OCT4_SOX2{dimer}:-0.565027496396;ATF5_CREB3:-0.57087732225;MYOD1:-0.598543943178;GCM1,2:-0.617141595579;TGIF1:-0.628262481522;ATF2:-0.639869236892;SOX5:-0.641174759707;CUX2:-0.665976398229;SPI1:-0.670299401125;ETS1,2:-0.684240173144;CDC5L:-0.699168025964;IRF7:-0.71235251443;ZEB1:-0.732520846873;ADNP_IRX_SIX_ZHX:-0.739690132267;NKX2-3_NKX2-5:-0.758415274472;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.770480238856;NANOG:-0.793792948584;SPIB:-0.798090380787;FOXN1:-0.798106464984;JUN:-0.802523661706;FOXP1:-0.808418468319;POU6F1:-0.823450476505;TFDP1:-0.827380136348;PITX1..3:-0.889486369912;HOX{A6,A7,B6,B7}:-0.896407173297;T:-0.950572340734;FOXD3:-0.952092500277;E2F1..5:-0.971388616599;BREu{core}:-0.973193901514;POU2F1..3:-1.02830065159;ELF1,2,4:-1.06445496712;HOXA9_MEIS1:-1.06676135329;NFY{A,B,C}:-1.07049382955;NFIL3:-1.11666372112;POU1F1:-1.23813289173;HBP1_HMGB_SSRP1_UBTF:-1.28408738574;RORA:-1.38723914242;FOX{I1,J2}:-1.85082429651;PBX1:-1.96169423944;TLX2:-2.18683699195
|top_motifs=GLI1..3:1.77150357484;TAL1_TCF{3,4,12}:1.71008489742;NR3C1:1.64196647181;IKZF1:1.49272813193;EVI1:1.44640478685;NKX3-1:1.34523445997;PPARG:1.33285650589;ZNF423:1.31598869381;HMX1:1.28688851508;ESR1:1.17633516542;ZIC1..3:1.10849651318;SMAD1..7,9:1.0414307567;HMGA1,2:1.03483651426;ONECUT1,2:1.02251184649;MAFB:0.994017294396;UFEwm:0.990819781671;TFAP4:0.978090333575;EBF1:0.885816012168;TEAD1:0.880632279778;RXRA_VDR{dimer}:0.871984776029;NFIX:0.869814225215;SREBF1,2:0.864627460945;ZBTB6:0.846421884832;LHX3,4:0.835451916607;NFE2L1:0.8013033483;ALX4:0.778265684799;HOX{A4,D4}:0.733426760845;GTF2I:0.727066429842;KLF4:0.715304305137;NR6A1:0.660365441029;EN1,2:0.655024402606;GFI1B:0.640963734275;SRF:0.636655237986;GTF2A1,2:0.628706907776;HAND1,2:0.610108692944;TBX4,5:0.592963931265;AIRE:0.586999595483;SPZ1:0.581805475366;TLX1..3_NFIC{dimer}:0.576731922381;MYBL2:0.54004204073;MAZ:0.534150244472;TFCP2:0.489607231253;ZNF384:0.489186941152;HOX{A5,B5}:0.486722006492;HLF:0.485369923937;PRDM1:0.484079832799;TP53:0.469596480964;FOXA2:0.466001380795;bHLH_family:0.443072406148;VSX1,2:0.442593952895;MZF1:0.429513764685;BPTF:0.420793383274;PATZ1:0.420504521135;GZF1:0.418590097328;TOPORS:0.415638294392;XBP1:0.403177763248;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.384624499807;RXR{A,B,G}:0.382897577454;NANOG{mouse}:0.376672043992;HIF1A:0.373797072583;TFAP2{A,C}:0.372319849507;ZNF238:0.367385210551;NKX2-1,4:0.336681636582;FOX{F1,F2,J1}:0.316459312781;GATA4:0.315848558975;RREB1:0.312909454712;SOX17:0.311421831769;NFE2L2:0.310679285884;TEF:0.306878148975;ARID5B:0.29982914014;FOXL1:0.298392551245;ZNF148:0.29471872478;DBP:0.267974448437;AHR_ARNT_ARNT2:0.266717399286;PDX1:0.221054759753;ESRRA:0.14710958284;NFATC1..3:0.146102803532;MTE{core}:0.121107690693;HIC1:0.114965872595;ATF4:0.0977136363018;RBPJ:0.0935580816525;MEF2{A,B,C,D}:0.0891353095263;LMO2:0.0862189506234;CDX1,2,4:0.0441760798462;ATF6:0.0301304568343;NKX2-2,8:0.029402917129;FOXO1,3,4:0.0239533396739;XCPE1{core}:0.0158546263995;NR5A1,2:0.00889624476662;PAX3,7:-0.00763929796297;TFAP2B:-0.0143473806864;SP1:-0.0162650271092;SOX2:-0.0226883517147;ZFP161:-0.0239209711654;LEF1_TCF7_TCF7L1,2:-0.0386213253412;HNF1A:-0.0659882913428;STAT2,4,6:-0.0845169155524;ZBTB16:-0.0953691960632;NHLH1,2:-0.103416089274;NRF1:-0.109157482534;RFX1:-0.110362388018;EP300:-0.113438995152;BACH2:-0.115120669012;REST:-0.122482176034;STAT1,3:-0.14492890301;NKX3-2:-0.146848066158;POU5F1:-0.147425906194;MYFfamily:-0.1498280153;PAX5:-0.155688666565;CREB1:-0.160625139123;FOSL2:-0.164927590627;HNF4A_NR2F1,2:-0.170845657175;POU3F1..4:-0.174988135343;SNAI1..3:-0.187155532119;ZNF143:-0.210587830462;MTF1:-0.21101893813;HES1:-0.212651563326;YY1:-0.215819563907;NR1H4:-0.222698981478;PAX6:-0.243326970161;CRX:-0.248192961596;HSF1,2:-0.254148045052;FOXP3:-0.258731053938;MED-1{core}:-0.259516628878;IKZF2:-0.259925388519;FOS_FOS{B,L1}_JUN{B,D}:-0.260205815068;GATA6:-0.269460634064;PAX4:-0.276631404544;CEBPA,B_DDIT3:-0.282454182336;FOXM1:-0.291506909858;NFKB1_REL_RELA:-0.318481454746;IRF1,2:-0.341317713128;GFI1:-0.341559554753;FOXQ1:-0.347051597103;STAT5{A,B}:-0.353498732309;ELK1,4_GABP{A,B1}:-0.37161342964;PAX1,9:-0.393343067841;NFE2:-0.394031076319;AR:-0.406641741369;ALX1:-0.412402849274;PAX2:-0.427172868885;NKX6-1,2:-0.442647148651;DMAP1_NCOR{1,2}_SMARC:-0.464645008653;FOX{D1,D2}:-0.47160303948;MYB:-0.475753471442;SOX{8,9,10}:-0.481231221015;PRRX1,2:-0.487204504963;EGR1..3:-0.526107005666;PAX8:-0.541342572345;RUNX1..3:-0.543297326486;RFX2..5_RFXANK_RFXAP:-0.551726456439;TBP:-0.554292480026;OCT4_SOX2{dimer}:-0.565027496396;ATF5_CREB3:-0.57087732225;MYOD1:-0.598543943178;GCM1,2:-0.617141595579;TGIF1:-0.628262481522;ATF2:-0.639869236892;SOX5:-0.641174759707;CUX2:-0.665976398229;SPI1:-0.670299401125;ETS1,2:-0.684240173144;CDC5L:-0.699168025964;IRF7:-0.71235251443;ZEB1:-0.732520846873;ADNP_IRX_SIX_ZHX:-0.739690132267;NKX2-3_NKX2-5:-0.758415274472;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.770480238856;NANOG:-0.793792948584;SPIB:-0.798090380787;FOXN1:-0.798106464984;JUN:-0.802523661706;FOXP1:-0.808418468319;POU6F1:-0.823450476505;TFDP1:-0.827380136348;PITX1..3:-0.889486369912;HOX{A6,A7,B6,B7}:-0.896407173297;T:-0.950572340734;FOXD3:-0.952092500277;E2F1..5:-0.971388616599;BREu{core}:-0.973193901514;POU2F1..3:-1.02830065159;ELF1,2,4:-1.06445496712;HOXA9_MEIS1:-1.06676135329;NFY{A,B,C}:-1.07049382955;NFIL3:-1.11666372112;POU1F1:-1.23813289173;HBP1_HMGB_SSRP1_UBTF:-1.28408738574;RORA:-1.38723914242;FOX{I1,J2}:-1.85082429651;PBX1:-1.96169423944;TLX2:-2.18683699195
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11629-122B9;search_select_hide=table117:FF:11629-122B9
}}
}}

Latest revision as of 18:12, 4 June 2020

Name:Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12105
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical cord
dev stageNA
sexfemale
age?
cell typemesenchymal stem cell
cell lineNA
companyCET
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004807
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12105 CAGE DRX008366 DRR009238
Accession ID Hg19

Library idBAMCTSS
CNhs12105 DRZ000663 DRZ002048
Accession ID Hg38

Library idBAMCTSS
CNhs12105 DRZ012013 DRZ013398
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004807
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.CAGATC sRNA-Seq DRX037132 DRR041498
Accession ID Hg19

Library idBAMCTSS
SRhi10009.CAGATC DRZ007140


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.08
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.338
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.305
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.155
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.518
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0862
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0431
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.547
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0562
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.517
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.268
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.897
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.648
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.518
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.956
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.648
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12105

Jaspar motifP-value
MA0002.20.677
MA0003.10.361
MA0004.10.64
MA0006.10.39
MA0007.10.858
MA0009.10.36
MA0014.10.243
MA0017.10.633
MA0018.23.47351e-5
MA0019.10.692
MA0024.14.29234e-5
MA0025.10.00168
MA0027.10.479
MA0028.10.00177
MA0029.10.0756
MA0030.10.399
MA0031.10.271
MA0035.20.73
MA0038.10.178
MA0039.20.733
MA0040.10.804
MA0041.10.253
MA0042.10.293
MA0043.10.00108
MA0046.10.899
MA0047.20.976
MA0048.10.656
MA0050.16.26128e-4
MA0051.10.00572
MA0052.10.206
MA0055.10.335
MA0057.10.234
MA0058.10.602
MA0059.10.771
MA0060.19.44966e-7
MA0061.10.683
MA0062.28.40457e-9
MA0065.20.869
MA0066.10.289
MA0067.10.023
MA0068.10.169
MA0069.10.475
MA0070.10.929
MA0071.10.884
MA0072.10.302
MA0073.10.967
MA0074.10.217
MA0076.13.06e-4
MA0077.10.74
MA0078.10.707
MA0079.20.906
MA0080.25.15568e-11
MA0081.16.83024e-4
MA0083.10.0845
MA0084.10.678
MA0087.10.786
MA0088.10.534
MA0090.13.15506e-4
MA0091.10.0731
MA0092.10.454
MA0093.10.58
MA0099.20.00255
MA0100.10.102
MA0101.10.0506
MA0102.20.00444
MA0103.10.53
MA0104.20.212
MA0105.10.4
MA0106.10.104
MA0107.10.044
MA0108.20.0302
MA0111.10.686
MA0112.20.00148
MA0113.10.135
MA0114.10.676
MA0115.10.00489
MA0116.10.107
MA0117.10.401
MA0119.10.126
MA0122.11
MA0124.10.0283
MA0125.10.0251
MA0131.10.173
MA0135.10.948
MA0136.11.70896e-13
MA0137.20.185
MA0138.20.102
MA0139.10.208
MA0140.10.899
MA0141.10.556
MA0142.10.576
MA0143.10.587
MA0144.10.584
MA0145.10.901
MA0146.10.196
MA0147.10.198
MA0148.10.5
MA0149.10.774
MA0150.10.0946
MA0152.10.0738
MA0153.10.172
MA0154.10.0528
MA0155.10.107
MA0156.11.72519e-13
MA0157.10.541
MA0159.10.138
MA0160.10.425
MA0162.10.0389
MA0163.10.0455
MA0164.10.651
MA0258.10.0376
MA0259.10.367



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12105

Novel motifP-value
10.588
100.644
1000.793
1010.459
1020.112
1030.309
1040.923
1050.889
1060.361
1070.164
1080.413
1090.597
110.127
1100.351
1110.414
1120.596
1130.00654
1140.202
1150.268
1160.316
1170.935
1180.868
1190.505
120.196
1200.394
1210.73
1220.363
1230.00906
1240.736
1250.691
1260.812
1270.524
1280.499
1290.747
130.864
1300.294
1310.345
1320.142
1330.683
1340.129
1350.824
1360.773
1370.399
1380.285
1390.038
140.955
1400.235
1410.729
1420.589
1430.988
1440.46
1450.978
1460.955
1470.68
1480.958
1490.0062
150.907
1500.98
1510.816
1520.272
1530.277
1540.565
1550.502
1560.535
1570.912
1580.0586
1590.526
160.0084
1600.222
1610.0988
1620.883
1630.636
1640.249
1650.734
1660.0423
1670.901
1680.173
1690.00848
170.535
180.0379
190.0824
20.527
200.875
210.177
220.0373
230.0133
240.273
250.808
260.382
270.18
280.439
290.177
30.446
300.142
310.12
321.77983e-18
330.912
340.786
350.739
360.236
370.117
380.955
390.574
40.789
400.983
410.545
420.648
430.195
440.198
450.54
460.151
470.599
480.4
490.471
50.396
500.986
510.828
520.474
530.143
540.159
550.233
560.771
570.244
580.817
590.00775
60.956
600.823
610.988
620.282
630.452
640.503
650.0624
660.72
670.334
680.274
690.276
70.875
700.0422
710.228
720.785
730.502
740.367
750.262
760.468
770.0328
780.696
790.0155
80.0939
800.969
810.597
820.0786
830.0393
840.46
850.156
860.817
870.347
880.254
890.161
90.769
900.297
910.0336
920.068
930.153
940.45
950.905
960.397
970.371
980.802
990.326



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12105


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000081 (blood cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000117 (human mesenchymal stem cell of umbilical cord blood sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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