FF:11674-122G9: Difference between revisions

Latest revision as of 18:14, 4 June 2020

Name:	Smooth Muscle Cells - Tracheal, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12894
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2587
catalog number	SC3415
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005738

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12894		CAGE		DRX008506		DRR009378

Accession ID Hg19

Library id		BAM		CTSS
CNhs12894		DRZ000803		DRZ002188

Accession ID Hg38

Library id		BAM		CTSS
CNhs12894		DRZ012153		DRZ013538

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.111
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.179
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.219
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00563
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.129
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.213
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.114
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.559
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.788
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.705
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.219
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.215
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.604
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.198
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.556
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.254
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.472
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.219
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.559
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.631
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12894

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.573
MA0003.1	MA0003.1	0.459
MA0004.1	MA0004.1	0.655
MA0006.1	MA0006.1	0.276
MA0007.1	MA0007.1	0.00801
MA0009.1	MA0009.1	0.341
MA0014.1	MA0014.1	0.797
MA0017.1	MA0017.1	0.678
MA0018.2	MA0018.2	2.78849e-4
MA0019.1	MA0019.1	0.219
MA0024.1	MA0024.1	0.00417
MA0025.1	MA0025.1	0.00102
MA0027.1	MA0027.1	0.675
MA0028.1	MA0028.1	2.61895e-6
MA0029.1	MA0029.1	0.562
MA0030.1	MA0030.1	0.996
MA0031.1	MA0031.1	0.761
MA0035.2	MA0035.2	0.227
MA0038.1	MA0038.1	0.101
MA0039.2	MA0039.2	0.311
MA0040.1	MA0040.1	0.157
MA0041.1	MA0041.1	0.309
MA0042.1	MA0042.1	0.332
MA0043.1	MA0043.1	0.00256
MA0046.1	MA0046.1	0.815
MA0047.2	MA0047.2	0.75
MA0048.1	MA0048.1	0.892
MA0050.1	MA0050.1	2.48873e-4
MA0051.1	MA0051.1	0.103
MA0052.1	MA0052.1	0.109
MA0055.1	MA0055.1	0.142
MA0057.1	MA0057.1	0.966
MA0058.1	MA0058.1	0.739
MA0059.1	MA0059.1	0.639
MA0060.1	MA0060.1	1.65978e-5
MA0061.1	MA0061.1	0.132
MA0062.2	MA0062.2	3.27383e-16
MA0065.2	MA0065.2	0.831
MA0066.1	MA0066.1	0.403
MA0067.1	MA0067.1	0.0161
MA0068.1	MA0068.1	0.71
MA0069.1	MA0069.1	0.187
MA0070.1	MA0070.1	0.788
MA0071.1	MA0071.1	0.957
MA0072.1	MA0072.1	0.546
MA0073.1	MA0073.1	0.582
MA0074.1	MA0074.1	0.0583
MA0076.1	MA0076.1	4.61059e-8
MA0077.1	MA0077.1	0.228
MA0078.1	MA0078.1	0.861
MA0079.2	MA0079.2	0.581
MA0080.2	MA0080.2	2.30672e-8
MA0081.1	MA0081.1	0.00746
MA0083.1	MA0083.1	3.25062e-7
MA0084.1	MA0084.1	0.519
MA0087.1	MA0087.1	0.99
MA0088.1	MA0088.1	0.675
MA0090.1	MA0090.1	0.00258
MA0091.1	MA0091.1	3.80951e-5
MA0092.1	MA0092.1	0.765
MA0093.1	MA0093.1	0.892
MA0099.2	MA0099.2	0.0753
MA0100.1	MA0100.1	0.252
MA0101.1	MA0101.1	0.00666
MA0102.2	MA0102.2	0.934
MA0103.1	MA0103.1	0.029
MA0104.2	MA0104.2	0.295
MA0105.1	MA0105.1	0.237
MA0106.1	MA0106.1	0.791
MA0107.1	MA0107.1	0.0012
MA0108.2	MA0108.2	0.00199
MA0111.1	MA0111.1	0.737
MA0112.2	MA0112.2	0.0134
MA0113.1	MA0113.1	0.0137
MA0114.1	MA0114.1	0.657
MA0115.1	MA0115.1	0.235
MA0116.1	MA0116.1	0.386
MA0117.1	MA0117.1	0.186
MA0119.1	MA0119.1	0.016
MA0122.1	MA0122.1	0.75
MA0124.1	MA0124.1	0.539
MA0125.1	MA0125.1	0.624
MA0131.1	MA0131.1	0.109
MA0135.1	MA0135.1	0.627
MA0136.1	MA0136.1	1.63544e-12
MA0137.2	MA0137.2	0.676
MA0138.2	MA0138.2	0.49
MA0139.1	MA0139.1	0.62
MA0140.1	MA0140.1	0.208
MA0141.1	MA0141.1	0.155
MA0142.1	MA0142.1	0.348
MA0143.1	MA0143.1	0.997
MA0144.1	MA0144.1	0.577
MA0145.1	MA0145.1	0.16
MA0146.1	MA0146.1	0.44
MA0147.1	MA0147.1	0.208
MA0148.1	MA0148.1	0.626
MA0149.1	MA0149.1	0.918
MA0150.1	MA0150.1	0.111
MA0152.1	MA0152.1	0.011
MA0153.1	MA0153.1	0.149
MA0154.1	MA0154.1	0.393
MA0155.1	MA0155.1	0.115
MA0156.1	MA0156.1	2.23974e-15
MA0157.1	MA0157.1	0.686
MA0159.1	MA0159.1	0.618
MA0160.1	MA0160.1	0.838
MA0162.1	MA0162.1	0.073
MA0163.1	MA0163.1	0.0435
MA0164.1	MA0164.1	0.765
MA0258.1	MA0258.1	0.245
MA0259.1	MA0259.1	0.291

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12894

Novel motif	Logo	P-value
1	1	0.873
10	10	0.899
100	100	0.55
101	101	0.538
102	102	0.11
103	103	0.64
104	104	0.611
105	105	0.743
106	106	0.0693
107	107	0.0406
108	108	0.317
109	109	0.57
11	11	0.485
110	110	0.23
111	111	0.769
112	112	0.762
113	113	0.0573
114	114	0.483
115	115	0.367
116	116	0.0203
117	117	0.769
118	118	0.899
119	119	0.764
12	12	0.427
120	120	0.231
121	121	0.135
122	122	0.14
123	123	0.082
124	124	0.907
125	125	0.252
126	126	0.671
127	127	0.617
128	128	9.43888e-4
129	129	0.996
13	13	0.892
130	130	0.916
131	131	0.635
132	132	0.455
133	133	0.799
134	134	0.878
135	135	0.48
136	136	0.615
137	137	0.127
138	138	0.405
139	139	0.402
14	14	0.68
140	140	0.768
141	141	0.703
142	142	0.712
143	143	0.718
144	144	0.466
145	145	0.359
146	146	0.501
147	147	0.27
148	148	0.221
149	149	0.0453
15	15	0.733
150	150	0.263
151	151	0.187
152	152	0.252
153	153	0.382
154	154	0.364
155	155	0.133
156	156	0.552
157	157	0.715
158	158	0.00226
159	159	0.113
16	16	0.035
160	160	0.124
161	161	0.908
162	162	0.0468
163	163	0.504
164	164	0.318
165	165	0.411
166	166	0.0709
167	167	0.208
168	168	0.934
169	169	0.0921
17	17	0.507
18	18	0.316
19	19	0.0103
2	2	0.2
20	20	0.271
21	21	0.0978
22	22	0.142
23	23	0.0492
24	24	0.524
25	25	0.312
26	26	0.153
27	27	0.459
28	28	0.0634
29	29	0.76
3	3	0.624
30	30	0.361
31	31	0.257
32	32	2.49413e-9
33	33	0.246
34	34	0.436
35	35	0.93
36	36	0.161
37	37	0.278
38	38	0.911
39	39	0.146
4	4	0.203
40	40	0.533
41	41	0.0289
42	42	0.535
43	43	0.397
44	44	0.819
45	45	0.351
46	46	0.174
47	47	0.583
48	48	0.409
49	49	0.672
5	5	0.923
50	50	0.507
51	51	0.669
52	52	0.146
53	53	0.332
54	54	0.545
55	55	0.616
56	56	0.202
57	57	0.959
58	58	0.367
59	59	0.0628
6	6	0.719
60	60	0.437
61	61	0.731
62	62	0.814
63	63	0.42
64	64	0.941
65	65	0.225
66	66	0.38
67	67	0.647
68	68	0.76
69	69	0.174
7	7	0.513
70	70	0.81
71	71	0.197
72	72	0.159
73	73	0.344
74	74	0.14
75	75	0.882
76	76	0.788
77	77	0.307
78	78	0.593
79	79	0.0723
8	8	0.0647
80	80	0.32
81	81	0.289
82	82	0.339
83	83	0.694
84	84	0.966
85	85	0.0108
86	86	0.54
87	87	0.669
88	88	0.395
89	89	0.133
9	9	0.334
90	90	0.747
91	91	0.221
92	92	0.0273
93	93	0.595
94	94	0.782
95	95	0.792
96	96	0.215
97	97	0.253
98	98	0.468
99	99	5.03515e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12894

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000184 human smooth muscle cell of trachea sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002600 (smooth muscle cell of trachea)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000184 (human smooth muscle cell of trachea sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0003126,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0003103,UBERON:0009569,UBERON:0005291,UBERON:0005178,UBERON:0002036,UBERON:0002385,UBERON:0000072,UBERON:0005177,UBERON:0000486,UBERON:0003104,UBERON:0000464,UBERON:0000914,UBERON:0005256,UBERON:0001048,UBERON:0001005,UBERON:0000925,UBERON:0005181,UBERON:0006598,UBERON:0004185,UBERON:0001015,UBERON:0002532,UBERON:0007196,UBERON:0001555,UBERON:0000065,UBERON:0001558,UBERON:0002329,UBERON:0001004,UBERON:0002204,UBERON:0007026,UBERON:0001041,UBERON:0000383,UBERON:0002224,UBERON:0000915,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0008947,UBERON:0003258,UBERON:0006595,UBERON:0006603,UBERON:0003082,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00005738
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000222,CL:0002600,CL:0000355,CL:0000514
+|accession_numbers=CAGE;DRX008506;DRR009378;DRZ000803;DRZ002188;DRZ012153;DRZ013538
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002600
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000184
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.33!212.51!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.79!61.00!HIF3A;;chr15:57511609..57511651,+!p2@TCF12!1.63!68.21!TCF12;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.59!ZFP106;;chr6:1389789..1389821,+!p1@FOXF2!1.57!49.19!FOXF2;;chr14:61116183..61116208,-!p1@SIX1!1.51!114.78!SIX1;;chr16:86544113..86544145,+!p1@FOXF1!1.50!37.39!FOXF1;;chr2:239756671..239756732,+!p1@TWIST2!1.49!93.79!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!1.47!41.32!NFIX;;chr17:59477233..59477263,+!p1@TBX2!1.44!80.02!TBX2;;chr17:1959369..1959388,+!p2@HIC1!1.36!56.41!HIC1;;chr17:46671108..46671147,-!p1@HOXB5!1.33!20.33!HOXB5;;chr1:170633348..170633399,+!p2@PRRX1!1.32!26.89!PRRX1;;chr17:46655704..46655718,-!p2@HOXB4!1.30!28.20!HOXB4;;chr1:170632285..170632309,+!p1@PRRX1!1.30!21.64!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.27!89.20!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.27!47.88!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.25!28.20!TWIST2;;chr15:96876966..96877017,+!p12@NR2F2!1.24!23.61!NR2F2;;chr7:27183291..27183324,-!p1@HOXA5!1.22!15.74!HOXA5;;chr3:25470156..25470227,+!p2@RARB!1.22!15.74!RARB;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.67!HMGA2;;chr7:27183263..27183284,-!p2@HOXA5!1.21!15.09!HOXA5;;chr17:59477275..59477286,+!p3@TBX2!1.20!19.68!TBX2;;chr5:92918956..92918969,+!p4@NR2F1!1.20!16.40!NR2F1;;chr12:66218598..66218645,+!p2@HMGA2!1.19!66.25!HMGA2;;chr11:47279504..47279563,+!p1@NR1H3!1.18!32.14!NR1H3;;chr11:46299539..46299620,+!p2@CREB3L1!1.18!23.61!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!1.17!61.65!NR2F1;;chr14:75745523..75745537,+!p1@FOS!1.15!1547.91!FOS;;chr15:57511589..57511608,+!p4@TCF12!1.15!13.12!TCF12;;chr15:96873984..96873999,+!p3@NR2F2!1.13!90.51!NR2F2;;chr3:12329358..12329393,+!p3@PPARG!1.13!30.83!PPARG;;chr20:50179368..50179392,-!p2@NFATC2!1.12!15.74!NFATC2;;chr1:170633262..170633285,+!p3@PRRX1!1.11!13.77!PRRX1;;chr17:59477197..59477212,+!p2@TBX2!1.09!19.68!TBX2;;chr9:132427972..132428056,+!p1@PRRX2!1.08!14.43!PRRX2;;chr7:27183114..27183138,-!p3@HOXA5!1.08!11.15!HOXA5;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.09!ZBTB16;;chr3:12329397..12329433,+!p2@PPARG!1.03!22.30!PPARG;;chr3:141105705..141105770,+!p4@ZBTB38!1.03!11.81!ZBTB38;;chr5:2751762..2751784,-!p1@IRX2!1.03!9.84!IRX2;;chr7:27183191..27183214,-!p4@HOXA5!1.03!9.84!HOXA5;;chr17:46675558..46675577,-!p2@HOXB6!1.03!9.84!HOXB6;;chr9:102584262..102584276,+!p1@NR4A3!1.02!21.64!NR4A3;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.49!PRRX1;;chr5:137801160..137801176,+!p1@EGR1!1.01!927.44!EGR1;;chr8:49833948..49833973,-!p2@SNAI2!1.01!59.69!SNAI2;;chr6:1389989..1390019,+!p2@FOXF2!1.01!9.18!FOXF2;;chr6:1610293..1610310,+!p1@FOXC1!1.00!15.09!FOXC1;;chr8:48650715..48650735,-!p1@CEBPD!0.99!1147.82!CEBPD;;chr19:45971246..45971265,+!p1@FOSB!0.99!165.94!FOSB;;chr7:19157043..19157088,-!p2@TWIST1!0.99!22.30!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.99!17.05!NR2F2;;chr12:66218836..66218888,+!p1@HMGA2!0.98!81.99!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.98!9.84!NR1H3;;chr14:61116168..61116180,-!p2@SIX1!0.98!9.84!SIX1;;chr3:12330560..12330579,+!p1@PPARG!0.98!9.84!PPARG;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.53!KDM5D;;chr12:52445218..52445237,+!p1@NR4A1!0.95!102.98!NR4A1;;chr15:96874012..96874042,+!p2@NR2F2!0.94!71.49!NR2F2;;chr17:17726907..17726958,-!p2@SREBF1!0.94!49.19!SREBF1;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.64!OSR1;;chr19:3574330..3574393,+!p2@HMG20B!0.91!7.21!HMG20B;;chr1:170632250..170632277,+!p7@PRRX1!0.91!7.21!PRRX1;;chr14:29235961..29236008,+!p1@FOXG1!0.91!7.21!FOXG1;;chr9:132427883..132427951,+!p2@PRRX2!0.91!7.21!PRRX2;;chr8:25902876..25902936,-!p1@EBF2!0.91!7.21!EBF2;;chr8:49833978..49833996,-!p1@SNAI2!0.90!148.23!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.90!31.48!PCBP3;;chr5:92919100..92919135,+!p3@NR2F1!0.90!8.53!NR2F1;;chr6:85473156..85473210,-!p2@TBX18!0.90!8.53!TBX18;;chr12:66218183..66218209,+!p4@HMGA2!0.88!13.12!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.88!6.56!HMGA2;;chr15:80843484..80843499,+!p5@ARNT2!0.88!6.56!ARNT2;;chr7:14028488..14028516,-!p2@ETV1!0.87!7.21!ETV1;;chr20:42543441..42543497,+!p1@TOX2!0.85!28.86!TOX2;;chr5:137804484..137804498,+!p2@EGR1!0.85!25.58!EGR1;;chr9:128509663..128509715,+!p1@PBX3!0.85!21.64!PBX3;;chr14:73360799..73360817,-!p1@DPF3!0.84!21.64!DPF3;;chr20:42543506..42543549,+!p2@TOX2!0.84!15.09!TOX2;;chr12:115122318..115122331,-!p2@TBX3!0.84!5.90!TBX3;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.90!ZFY;;chr7:27142290..27142310,-!p1@HOXA2!0.84!5.90!HOXA2;;chr1:164528410..164528428,+!p1@PBX1!0.83!45.91!PBX1;;chr1:164528445..164528459,+!p2@PBX1!0.83!19.02!PBX1;;chr17:1958388..1958404,+!p1@HIC1!0.82!38.04!HIC1;;chr17:7492684..7492778,-!p2@SOX15!0.82!12.46!SOX15;;chr9:73029219..73029289,-!p2@KLF9!0.81!17.71!KLF9;;chr14:75746722..75746777,+!p2@FOS!0.81!7.21!FOS;;chr5:137804357..137804390,+!p4@EGR1!0.81!6.56!EGR1;;chr2:66662281..66662308,+!p1@MEIS1!0.80!19.68!MEIS1;;chr2:223163706..223163730,-!p1@PAX3!0.80!5.25!PAX3;;chr6:1389824..138984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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002600;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Tracheal%252c%2520donor3.CNhs12894.11674-122G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11674-122G9
 |is_a=EFO:0002091;;FF:0000184
 |is_obsolete=
+|library_id=CNhs12894
+|library_id_phase_based=2:CNhs12894
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11674
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11674
 |name=Smooth Muscle Cells - Tracheal, donor3
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12894,LSID974,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_catalog_number=SC3415
@@ Line 59: / Line 79: @@
 |rna_weight_ug=10
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11674-122G9;search_select_hide=table117:FF:11674-122G9
 }}

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FF:11674-122G9: Difference between revisions

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