FF:11676-122H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005901 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005901 | ||
|accession_numbers=CAGE;DRX008439;DRR009311;DRZ000736;DRZ002121;DRZ012086;DRZ013471 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037075;DRR041441;DRZ007083 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000155 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11676-122H2 | |id=FF:11676-122H2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000155 | ||
|is_obsolete= | |||
|library_id=CNhs12120 | |||
|library_id_phase_based=2:CNhs12120 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11676 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GATCAG.11676 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11676 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GATCAG.11676 | |||
|name=Renal Proximal Tubular Epithelial Cell, donor3 | |name=Renal Proximal Tubular Epithelial Cell, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12120,LSID839,release011,COMPLETED | |profile_hcage=CNhs12120,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.080346713224517,0,0,0,0,0.165889525728585,0,0.132084593456878,0.0696631148668171,0,0,0,0,0,0,0,0,0,0,0,0.160693426449034,0,0.172884545466543,0,0,0,0,0,-0.0102209197298547,0,0,0.0901820766632656,0,0,0,0,0,0,0,0,0,0,0,0,0.292135980499764,0.0877369765382028,0,0,0.0877369765382028,0,0,0,0,0.114646760872896,0,0,0,0.160693426449034,0,0.0644674388587546,0.0877369765382028,0.348767169913624,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0593288119163957,0.129200444613385,0,0,0,0.0400139619035405,0.0284370935719079,0,0,0.0438684882691014,0.0877369765382028,-0.0980353512377064,0.225176458170854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0424881880632689,0.0877369765382028,0,0,0.16928263625752,0.270560981275455,0,0,0.0877369765382028,0,0,0 | |||
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| |||
|rna_box=122 | |rna_box=122 | ||
|rna_catalog_number=SC4105 | |rna_catalog_number=SC4105 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=122H2 | |rna_tube_id=122H2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.GATCAG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.54592506909217e-225!GO:0005737;cytoplasm;3.60233648797499e-191!GO:0043226;organelle;6.56325178834213e-181!GO:0043229;intracellular organelle;8.41336328872911e-181!GO:0043231;intracellular membrane-bound organelle;1.43715324436893e-175!GO:0043227;membrane-bound organelle;4.41509471189822e-175!GO:0044422;organelle part;1.34878673344206e-135!GO:0044446;intracellular organelle part;1.54612403574218e-134!GO:0044444;cytoplasmic part;6.19907919557627e-132!GO:0032991;macromolecular complex;6.58500501681059e-86!GO:0044237;cellular metabolic process;4.22010081374828e-82!GO:0044238;primary metabolic process;2.21997370445639e-81!GO:0030529;ribonucleoprotein complex;9.82366838766027e-78!GO:0005515;protein binding;6.0610417825448e-76!GO:0005739;mitochondrion;9.77472976441813e-74!GO:0043170;macromolecule metabolic process;9.42534570092245e-72!GO:0005634;nucleus;6.2709990569771e-63!GO:0043233;organelle lumen;1.6771322919813e-60!GO:0031974;membrane-enclosed lumen;1.6771322919813e-60!GO:0044428;nuclear part;1.68492244427545e-57!GO:0003723;RNA binding;1.74021926425865e-54!GO:0005840;ribosome;1.83399160231119e-53!GO:0031090;organelle membrane;7.19989785512361e-51!GO:0044429;mitochondrial part;4.45692347796613e-49!GO:0019538;protein metabolic process;6.64954621031693e-49!GO:0006412;translation;9.39082832595249e-49!GO:0016043;cellular component organization and biogenesis;2.44726730434434e-48!GO:0009058;biosynthetic process;5.64139481773093e-47!GO:0003735;structural constituent of ribosome;2.21696781772181e-46!GO:0031967;organelle envelope;8.84341488202906e-44!GO:0044260;cellular macromolecule metabolic process;1.27626963820054e-43!GO:0044249;cellular biosynthetic process;1.47654288051522e-43!GO:0044267;cellular protein metabolic process;2.0229909805988e-43!GO:0031975;envelope;2.19584551677498e-43!GO:0043234;protein complex;1.19881105402782e-42!GO:0009059;macromolecule biosynthetic process;1.34332887966977e-39!GO:0033279;ribosomal subunit;1.90034995157952e-39!GO:0043283;biopolymer metabolic process;2.4337171954737e-39!GO:0015031;protein transport;3.00587530602439e-38!GO:0033036;macromolecule localization;9.6512071488348e-38!GO:0043228;non-membrane-bound organelle;1.1235757258729e-36!GO:0043232;intracellular non-membrane-bound organelle;1.1235757258729e-36!GO:0006996;organelle organization and biogenesis;1.33720396700349e-36!GO:0006396;RNA processing;7.61015039356854e-36!GO:0008104;protein localization;1.89484837967792e-35!GO:0045184;establishment of protein localization;1.25111113227347e-34!GO:0005829;cytosol;1.31154791796402e-34!GO:0005740;mitochondrial envelope;1.47139838775633e-33!GO:0031981;nuclear lumen;1.59269135351709e-33!GO:0046907;intracellular transport;1.52362888419197e-32!GO:0010467;gene expression;5.62979587599619e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.39370827514903e-31!GO:0031966;mitochondrial membrane;3.03146708475353e-31!GO:0019866;organelle inner membrane;8.18899233238654e-31!GO:0065003;macromolecular complex assembly;3.34540602617992e-30!GO:0005743;mitochondrial inner membrane;3.20544542502284e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.40220487251034e-29!GO:0016071;mRNA metabolic process;1.3102433745992e-27!GO:0022607;cellular component assembly;2.64150238535007e-27!GO:0006886;intracellular protein transport;2.05344385809516e-26!GO:0006259;DNA metabolic process;5.79503836958468e-26!GO:0008380;RNA splicing;6.12276173975223e-26!GO:0007049;cell cycle;9.63185941287669e-24!GO:0006397;mRNA processing;1.52812011204596e-23!GO:0044445;cytosolic part;1.31133509612382e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.49410965823973e-22!GO:0015934;large ribosomal subunit;4.59769317626508e-21!GO:0051641;cellular localization;1.92760966846029e-20!GO:0051649;establishment of cellular localization;2.67894127172212e-20!GO:0006119;oxidative phosphorylation;5.49806817193492e-20!GO:0044455;mitochondrial membrane part;1.60107047632166e-19!GO:0015935;small ribosomal subunit;1.93471443252384e-19!GO:0005681;spliceosome;2.39435123699114e-19!GO:0031980;mitochondrial lumen;2.65049440218551e-19!GO:0005759;mitochondrial matrix;2.65049440218551e-19!GO:0005654;nucleoplasm;5.23324540133184e-19!GO:0012505;endomembrane system;5.51241384028612e-19!GO:0000278;mitotic cell cycle;9.45853938742889e-19!GO:0000166;nucleotide binding;9.99984438784836e-19!GO:0022402;cell cycle process;1.06953609249682e-18!GO:0048770;pigment granule;2.04208590138374e-17!GO:0042470;melanosome;2.04208590138374e-17!GO:0051186;cofactor metabolic process;4.90693800881636e-17!GO:0006457;protein folding;3.53157700615861e-16!GO:0005783;endoplasmic reticulum;4.51642537520365e-16!GO:0005746;mitochondrial respiratory chain;6.50102527946448e-16!GO:0016874;ligase activity;6.73245049766048e-16!GO:0016462;pyrophosphatase activity;1.01609027232328e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.37378949994436e-15!GO:0008134;transcription factor binding;1.50056045931666e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.7641982269898e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.79198577243115e-15!GO:0044451;nucleoplasm part;1.94530738540416e-15!GO:0005730;nucleolus;2.55327276224029e-15!GO:0043412;biopolymer modification;4.65080101163575e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.13358962891291e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.13358962891291e-15!GO:0003954;NADH dehydrogenase activity;7.13358962891291e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.13358962891291e-15!GO:0017111;nucleoside-triphosphatase activity;7.76231111998818e-15!GO:0005761;mitochondrial ribosome;1.95094486713668e-14!GO:0000313;organellar ribosome;1.95094486713668e-14!GO:0005794;Golgi apparatus;3.03931777250394e-14!GO:0003676;nucleic acid binding;4.55415185281749e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.65593010956402e-14!GO:0012501;programmed cell death;4.84690178765318e-14!GO:0044432;endoplasmic reticulum part;7.20218806805791e-14!GO:0006464;protein modification process;7.91267999076758e-14!GO:0006605;protein targeting;9.04157536261302e-14!GO:0032553;ribonucleotide binding;1.18931196984052e-13!GO:0032555;purine ribonucleotide binding;1.18931196984052e-13!GO:0006915;apoptosis;1.22048351426293e-13!GO:0044265;cellular macromolecule catabolic process;1.36611223654767e-13!GO:0022403;cell cycle phase;1.39194460213201e-13!GO:0005694;chromosome;1.63259093005121e-13!GO:0051276;chromosome organization and biogenesis;1.74993683505676e-13!GO:0044427;chromosomal part;1.77792634816117e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.14777251574178e-13!GO:0017076;purine nucleotide binding;3.29209801337145e-13!GO:0006732;coenzyme metabolic process;3.30629647167229e-13!GO:0022618;protein-RNA complex assembly;3.49313682684707e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.17375413238463e-13!GO:0042773;ATP synthesis coupled electron transport;4.17375413238463e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.07219174307127e-13!GO:0045271;respiratory chain complex I;6.07219174307127e-13!GO:0005747;mitochondrial respiratory chain complex I;6.07219174307127e-13!GO:0006512;ubiquitin cycle;7.57932386365154e-13!GO:0007067;mitosis;8.78780979777189e-13!GO:0043285;biopolymer catabolic process;8.83834708241517e-13!GO:0000087;M phase of mitotic cell cycle;9.36639554397273e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.15363024317782e-12!GO:0044248;cellular catabolic process;1.17287817710038e-12!GO:0009057;macromolecule catabolic process;1.42044363563363e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.88195838055749e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.97763494748817e-12!GO:0008219;cell death;2.06941568785404e-12!GO:0016265;death;2.06941568785404e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.24150643073906e-12!GO:0019941;modification-dependent protein catabolic process;5.80180431304492e-12!GO:0043632;modification-dependent macromolecule catabolic process;5.80180431304492e-12!GO:0006974;response to DNA damage stimulus;6.32043634531606e-12!GO:0006323;DNA packaging;6.78427098920318e-12!GO:0006511;ubiquitin-dependent protein catabolic process;8.37419520968726e-12!GO:0044257;cellular protein catabolic process;9.23075091993711e-12!GO:0051082;unfolded protein binding;1.13839549265633e-11!GO:0009055;electron carrier activity;1.75454677098492e-11!GO:0016070;RNA metabolic process;1.75729118718318e-11!GO:0005524;ATP binding;1.95222869682836e-11!GO:0005635;nuclear envelope;2.33782724973432e-11!GO:0032559;adenyl ribonucleotide binding;2.68918527554021e-11!GO:0051726;regulation of cell cycle;3.14969481137321e-11!GO:0043687;post-translational protein modification;3.62779178047472e-11!GO:0000785;chromatin;3.81582494877131e-11!GO:0000074;regulation of progression through cell cycle;4.34413207236463e-11!GO:0030163;protein catabolic process;5.17688072032254e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;7.22417964771319e-11!GO:0000375;RNA splicing, via transesterification reactions;7.22417964771319e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.22417964771319e-11!GO:0030554;adenyl nucleotide binding;9.7737571645099e-11!GO:0043067;regulation of programmed cell death;1.6090167383585e-10!GO:0048523;negative regulation of cellular process;2.1623095130981e-10!GO:0031965;nuclear membrane;2.17475669601494e-10!GO:0042981;regulation of apoptosis;2.36387712804082e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.80027141452965e-10!GO:0065004;protein-DNA complex assembly;3.0622389432619e-10!GO:0005789;endoplasmic reticulum membrane;3.40497259194612e-10!GO:0008135;translation factor activity, nucleic acid binding;4.74850655197857e-10!GO:0048193;Golgi vesicle transport;4.97937375670979e-10!GO:0003712;transcription cofactor activity;5.27351184577569e-10!GO:0016740;transferase activity;5.82345006535555e-10!GO:0006399;tRNA metabolic process;6.19546069320347e-10!GO:0000279;M phase;7.32417092734392e-10!GO:0006333;chromatin assembly or disassembly;9.31665037641272e-10!GO:0016192;vesicle-mediated transport;9.88674774856289e-10!GO:0006281;DNA repair;1.16991955426446e-09!GO:0006913;nucleocytoplasmic transport;1.43106302771147e-09!GO:0006260;DNA replication;1.47299626521901e-09!GO:0051301;cell division;1.74036079128892e-09!GO:0042254;ribosome biogenesis and assembly;1.74036079128892e-09!GO:0044453;nuclear membrane part;1.75318532399459e-09!GO:0051188;cofactor biosynthetic process;1.80537447249463e-09!GO:0009259;ribonucleotide metabolic process;1.86706973901722e-09!GO:0006163;purine nucleotide metabolic process;2.10474005168068e-09!GO:0009719;response to endogenous stimulus;2.65498570342114e-09!GO:0051169;nuclear transport;3.07243688259893e-09!GO:0006334;nucleosome assembly;3.10516105787437e-09!GO:0007005;mitochondrion organization and biogenesis;3.28773999257149e-09!GO:0006461;protein complex assembly;3.89722138938581e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.33110648753311e-09!GO:0048519;negative regulation of biological process;5.49165970926912e-09!GO:0009150;purine ribonucleotide metabolic process;6.17699249127411e-09!GO:0031497;chromatin assembly;7.79231772889514e-09!GO:0050794;regulation of cellular process;9.68551523098218e-09!GO:0006164;purine nucleotide biosynthetic process;1.12368020493867e-08!GO:0005793;ER-Golgi intermediate compartment;1.54826615745091e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.72741477988115e-08!GO:0017038;protein import;2.0058015772189e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.06486800587188e-08!GO:0009260;ribonucleotide biosynthetic process;2.12143587950912e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.6607544637297e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.6607544637297e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.6607544637297e-08!GO:0005768;endosome;2.97914285075384e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.33528169311636e-08!GO:0065002;intracellular protein transport across a membrane;3.59025684379071e-08!GO:0006446;regulation of translational initiation;3.89859522444628e-08!GO:0006413;translational initiation;4.85794839455194e-08!GO:0005643;nuclear pore;5.31846857055995e-08!GO:0008639;small protein conjugating enzyme activity;6.94316515347208e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.81377514184622e-08!GO:0009141;nucleoside triphosphate metabolic process;9.07628072970807e-08!GO:0043038;amino acid activation;9.24597493284049e-08!GO:0006418;tRNA aminoacylation for protein translation;9.24597493284049e-08!GO:0043039;tRNA aminoacylation;9.24597493284049e-08!GO:0009199;ribonucleoside triphosphate metabolic process;9.37940925164863e-08!GO:0003743;translation initiation factor activity;1.31084093894007e-07!GO:0009060;aerobic respiration;1.34838141562692e-07!GO:0004842;ubiquitin-protein ligase activity;1.35785735500698e-07!GO:0015630;microtubule cytoskeleton;1.63369723103597e-07!GO:0009056;catabolic process;1.67669764772256e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.75721881304415e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.75721881304415e-07!GO:0006793;phosphorus metabolic process;1.97054292468085e-07!GO:0006796;phosphate metabolic process;1.97054292468085e-07!GO:0008565;protein transporter activity;2.01438262408639e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.2155385640215e-07!GO:0009117;nucleotide metabolic process;2.25061258974131e-07!GO:0042623;ATPase activity, coupled;2.39756876709999e-07!GO:0016604;nuclear body;2.62263387945812e-07!GO:0006366;transcription from RNA polymerase II promoter;3.23642803543974e-07!GO:0019787;small conjugating protein ligase activity;3.4460131392613e-07!GO:0043069;negative regulation of programmed cell death;3.68353135405554e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.86260525836834e-07!GO:0016563;transcription activator activity;3.8669682044392e-07!GO:0051246;regulation of protein metabolic process;3.91181047159636e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.92158621905034e-07!GO:0009108;coenzyme biosynthetic process;4.17878181629835e-07!GO:0003924;GTPase activity;5.57633706346463e-07!GO:0009142;nucleoside triphosphate biosynthetic process;6.38821222075816e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.38821222075816e-07!GO:0016887;ATPase activity;7.27351898978413e-07!GO:0045333;cellular respiration;8.14156979863398e-07!GO:0051329;interphase of mitotic cell cycle;9.05698910514765e-07!GO:0016491;oxidoreductase activity;9.55703331517197e-07!GO:0043066;negative regulation of apoptosis;9.56847469872335e-07!GO:0015986;ATP synthesis coupled proton transport;9.71365973786554e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.71365973786554e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.08183623120845e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.18914185673381e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.18914185673381e-06!GO:0051325;interphase;1.41478841813755e-06!GO:0006916;anti-apoptosis;1.47232149197284e-06!GO:0016881;acid-amino acid ligase activity;1.50868035203629e-06!GO:0046930;pore complex;1.53772976634188e-06!GO:0046034;ATP metabolic process;1.55412633566241e-06!GO:0006364;rRNA processing;1.65254400963737e-06!GO:0030120;vesicle coat;1.67880567620282e-06!GO:0030662;coated vesicle membrane;1.67880567620282e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.82761292184718e-06!GO:0007010;cytoskeleton organization and biogenesis;2.24582338690024e-06!GO:0045259;proton-transporting ATP synthase complex;2.38943134631219e-06!GO:0016568;chromatin modification;2.66290770918678e-06!GO:0019829;cation-transporting ATPase activity;2.66453048033095e-06!GO:0006099;tricarboxylic acid cycle;2.71973471802739e-06!GO:0046356;acetyl-CoA catabolic process;2.71973471802739e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.85271141039867e-06!GO:0044431;Golgi apparatus part;2.85271141039867e-06!GO:0048475;coated membrane;3.10927752797124e-06!GO:0030117;membrane coat;3.10927752797124e-06!GO:0016072;rRNA metabolic process;3.37969864888892e-06!GO:0006084;acetyl-CoA metabolic process;3.93830988700966e-06!GO:0050789;regulation of biological process;4.24467750309516e-06!GO:0031324;negative regulation of cellular metabolic process;4.83842799944567e-06!GO:0031252;leading edge;5.11249517710742e-06!GO:0008654;phospholipid biosynthetic process;5.50115137119232e-06!GO:0005762;mitochondrial large ribosomal subunit;6.17332364009614e-06!GO:0000315;organellar large ribosomal subunit;6.17332364009614e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.58482175959101e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.92783230037911e-06!GO:0016310;phosphorylation;7.69102185783029e-06!GO:0044440;endosomal part;8.26214136047274e-06!GO:0010008;endosome membrane;8.26214136047274e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.96691562500959e-06!GO:0003697;single-stranded DNA binding;1.00845721962506e-05!GO:0006754;ATP biosynthetic process;1.01300588788994e-05!GO:0006753;nucleoside phosphate metabolic process;1.01300588788994e-05!GO:0048522;positive regulation of cellular process;1.10560709789133e-05!GO:0009892;negative regulation of metabolic process;1.13495622027213e-05!GO:0031988;membrane-bound vesicle;1.22480719110342e-05!GO:0006403;RNA localization;1.25037413001651e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.28164166175579e-05!GO:0045786;negative regulation of progression through cell cycle;1.3502205119328e-05!GO:0050657;nucleic acid transport;1.49450768611363e-05!GO:0051236;establishment of RNA localization;1.49450768611363e-05!GO:0050658;RNA transport;1.49450768611363e-05!GO:0032446;protein modification by small protein conjugation;1.57907458240905e-05!GO:0051170;nuclear import;1.66550912898891e-05!GO:0016787;hydrolase activity;1.68811192891781e-05!GO:0016126;sterol biosynthetic process;1.78174026255778e-05!GO:0003714;transcription corepressor activity;1.91038711058276e-05!GO:0005788;endoplasmic reticulum lumen;1.97442845953065e-05!GO:0000786;nucleosome;2.23097459034616e-05!GO:0016853;isomerase activity;2.25012871250025e-05!GO:0016779;nucleotidyltransferase activity;2.30954443813224e-05!GO:0019899;enzyme binding;2.31170598200353e-05!GO:0016607;nuclear speck;2.47076908343672e-05!GO:0051187;cofactor catabolic process;2.54029325658641e-05!GO:0009109;coenzyme catabolic process;2.54029325658641e-05!GO:0004298;threonine endopeptidase activity;2.60599844069449e-05!GO:0005667;transcription factor complex;2.60715537038793e-05!GO:0016567;protein ubiquitination;2.64140305294724e-05!GO:0006752;group transfer coenzyme metabolic process;2.68030921002056e-05!GO:0006606;protein import into nucleus;3.2641950135832e-05!GO:0008610;lipid biosynthetic process;3.44612073522165e-05!GO:0005770;late endosome;3.87674768055203e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.12809182188938e-05!GO:0000245;spliceosome assembly;4.13731363196404e-05!GO:0045454;cell redox homeostasis;4.24095042042578e-05!GO:0016564;transcription repressor activity;4.32307956317694e-05!GO:0043623;cellular protein complex assembly;4.35814641210463e-05!GO:0042802;identical protein binding;4.86393575978346e-05!GO:0003713;transcription coactivator activity;5.05822012794826e-05!GO:0005905;coated pit;5.07321592172949e-05!GO:0006695;cholesterol biosynthetic process;5.3251373315957e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.5003491889165e-05!GO:0065009;regulation of a molecular function;6.52043157174832e-05!GO:0007264;small GTPase mediated signal transduction;6.7751467827412e-05!GO:0005525;GTP binding;6.93967686729396e-05!GO:0004386;helicase activity;7.20005301035781e-05!GO:0030029;actin filament-based process;7.22143809846826e-05!GO:0003899;DNA-directed RNA polymerase activity;7.28264680971317e-05!GO:0048468;cell development;7.47212185925053e-05!GO:0005819;spindle;7.7289833162878e-05!GO:0000139;Golgi membrane;7.89387278748236e-05!GO:0051427;hormone receptor binding;9.04782882640037e-05!GO:0007243;protein kinase cascade;0.000111214128445186!GO:0006839;mitochondrial transport;0.000119342728066596!GO:0043566;structure-specific DNA binding;0.00012153466539585!GO:0001558;regulation of cell growth;0.00012321189027332!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000124333937897612!GO:0031410;cytoplasmic vesicle;0.000139631768972254!GO:0005773;vacuole;0.000154906306915001!GO:0031982;vesicle;0.000172230748219898!GO:0016049;cell growth;0.000178680340302659!GO:0035257;nuclear hormone receptor binding;0.000184629155176608!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000184672738633071!GO:0008361;regulation of cell size;0.000199725230217017!GO:0051028;mRNA transport;0.000209094650905135!GO:0000314;organellar small ribosomal subunit;0.000216059753095743!GO:0005763;mitochondrial small ribosomal subunit;0.000216059753095743!GO:0008026;ATP-dependent helicase activity;0.000221379296063092!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000225604863135019!GO:0008092;cytoskeletal protein binding;0.000230033394493162!GO:0046474;glycerophospholipid biosynthetic process;0.000241316291879354!GO:0043681;protein import into mitochondrion;0.000248066470780933!GO:0005798;Golgi-associated vesicle;0.000294352815228739!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000297100866217682!GO:0006626;protein targeting to mitochondrion;0.000298397922497088!GO:0043065;positive regulation of apoptosis;0.000342669804566526!GO:0016859;cis-trans isomerase activity;0.00036795676239738!GO:0030118;clathrin coat;0.000372012486630265!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000377970706061577!GO:0016481;negative regulation of transcription;0.000379086297040398!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000379086297040398!GO:0046467;membrane lipid biosynthetic process;0.000390035809223941!GO:0030867;rough endoplasmic reticulum membrane;0.000390627826148866!GO:0033116;ER-Golgi intermediate compartment membrane;0.000391901516789965!GO:0005815;microtubule organizing center;0.000400997654815181!GO:0005874;microtubule;0.000402232650150094!GO:0015980;energy derivation by oxidation of organic compounds;0.000409253118303897!GO:0043068;positive regulation of programmed cell death;0.000409658840794456!GO:0032561;guanyl ribonucleotide binding;0.000409658840794456!GO:0019001;guanyl nucleotide binding;0.000409658840794456!GO:0008632;apoptotic program;0.000428733792642867!GO:0005813;centrosome;0.000431691462437535!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000431691462437535!GO:0009165;nucleotide biosynthetic process;0.000451894548156523!GO:0006091;generation of precursor metabolites and energy;0.000458021432122326!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000511168945285529!GO:0030133;transport vesicle;0.000525926590641628!GO:0005769;early endosome;0.000556998182779491!GO:0009967;positive regulation of signal transduction;0.000696488812614939!GO:0008250;oligosaccharyl transferase complex;0.000743698355437768!GO:0044262;cellular carbohydrate metabolic process;0.000760944562258749!GO:0030176;integral to endoplasmic reticulum membrane;0.000774201870399913!GO:0007006;mitochondrial membrane organization and biogenesis;0.000797719359360637!GO:0007088;regulation of mitosis;0.000808666138288768!GO:0006082;organic acid metabolic process;0.000813462374311598!GO:0006613;cotranslational protein targeting to membrane;0.000843875141540863!GO:0005791;rough endoplasmic reticulum;0.0008617003824466!GO:0001726;ruffle;0.000883532895422534!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00089167663158348!GO:0000151;ubiquitin ligase complex;0.000931605253044763!GO:0019752;carboxylic acid metabolic process;0.000954626027356259!GO:0005885;Arp2/3 protein complex;0.000969316605580893!GO:0051920;peroxiredoxin activity;0.00104198291955099!GO:0005048;signal sequence binding;0.00105004064966807!GO:0031968;organelle outer membrane;0.00107249461331266!GO:0006261;DNA-dependent DNA replication;0.00112724650762445!GO:0004674;protein serine/threonine kinase activity;0.00114733427311503!GO:0048518;positive regulation of biological process;0.00116446157330459!GO:0048471;perinuclear region of cytoplasm;0.00118658405461203!GO:0008033;tRNA processing;0.00126499201440771!GO:0000323;lytic vacuole;0.00129145921525169!GO:0005764;lysosome;0.00129145921525169!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00135258980093542!GO:0030119;AP-type membrane coat adaptor complex;0.00135771898497567!GO:0006414;translational elongation;0.00143956700205392!GO:0005741;mitochondrial outer membrane;0.00149539409299583!GO:0005684;U2-dependent spliceosome;0.00151699965722862!GO:0019867;outer membrane;0.00151699965722862!GO:0030132;clathrin coat of coated pit;0.00151699965722862!GO:0006520;amino acid metabolic process;0.00161683199467185!GO:0045941;positive regulation of transcription;0.00162527877854058!GO:0008637;apoptotic mitochondrial changes;0.00163641344833047!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00172131863172055!GO:0040008;regulation of growth;0.00173131477731334!GO:0030658;transport vesicle membrane;0.00179271581357183!GO:0016044;membrane organization and biogenesis;0.00180916981850936!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00190408926013652!GO:0045893;positive regulation of transcription, DNA-dependent;0.0020014472269022!GO:0019843;rRNA binding;0.00201088483920568!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00206487630631634!GO:0030131;clathrin adaptor complex;0.00215288591740178!GO:0043488;regulation of mRNA stability;0.00217292610371839!GO:0043487;regulation of RNA stability;0.00217292610371839!GO:0016301;kinase activity;0.00218563975919513!GO:0007051;spindle organization and biogenesis;0.00219143100036253!GO:0018196;peptidyl-asparagine modification;0.00228257003994815!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00228257003994815!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00233987816369302!GO:0043021;ribonucleoprotein binding;0.00242696230066176!GO:0030125;clathrin vesicle coat;0.00259912776364052!GO:0030665;clathrin coated vesicle membrane;0.00259912776364052!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0027349254957319!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0027349254957319!GO:0051789;response to protein stimulus;0.00285546257258439!GO:0006986;response to unfolded protein;0.00285546257258439!GO:0005657;replication fork;0.00287040835333168!GO:0008094;DNA-dependent ATPase activity;0.00288642075388217!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00293496496189256!GO:0000075;cell cycle checkpoint;0.00311524690831771!GO:0051168;nuclear export;0.00314942983552976!GO:0003684;damaged DNA binding;0.00321970686994155!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00324728381865128!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00324728381865128!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00324728381865128!GO:0033673;negative regulation of kinase activity;0.00345190245132653!GO:0006469;negative regulation of protein kinase activity;0.00345190245132653!GO:0030031;cell projection biogenesis;0.00363177229020755!GO:0051348;negative regulation of transferase activity;0.00363177229020755!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00368324495453233!GO:0004576;oligosaccharyl transferase activity;0.0037551377211937!GO:0003724;RNA helicase activity;0.003768360428321!GO:0006740;NADPH regeneration;0.00381042983277448!GO:0006098;pentose-phosphate shunt;0.00381042983277448!GO:0031902;late endosome membrane;0.00390151315361588!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00396366250768116!GO:0000082;G1/S transition of mitotic cell cycle;0.00405219343149623!GO:0046489;phosphoinositide biosynthetic process;0.00422146107431268!GO:0032508;DNA duplex unwinding;0.0042482978274472!GO:0032392;DNA geometric change;0.0042482978274472!GO:0051287;NAD binding;0.00431505812368006!GO:0006650;glycerophospholipid metabolic process;0.00434853335976123!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.004403269931771!GO:0015399;primary active transmembrane transporter activity;0.004403269931771!GO:0000775;chromosome, pericentric region;0.00441390043871692!GO:0030027;lamellipodium;0.0045149364690293!GO:0017166;vinculin binding;0.0045149364690293!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00488483621797489!GO:0043284;biopolymer biosynthetic process;0.00492296336365379!GO:0065007;biological regulation;0.00499935814068812!GO:0006778;porphyrin metabolic process;0.00547779240927931!GO:0033013;tetrapyrrole metabolic process;0.00547779240927931!GO:0030660;Golgi-associated vesicle membrane;0.00557947311389302!GO:0004680;casein kinase activity;0.00565474837870935!GO:0006402;mRNA catabolic process;0.00571779381356252!GO:0048487;beta-tubulin binding;0.00586637268193937!GO:0008047;enzyme activator activity;0.0060485376844174!GO:0006779;porphyrin biosynthetic process;0.00653869992237017!GO:0033014;tetrapyrrole biosynthetic process;0.00653869992237017!GO:0006979;response to oxidative stress;0.00655077816985488!GO:0019222;regulation of metabolic process;0.0065818940192489!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00669004987861285!GO:0006917;induction of apoptosis;0.00677067154237057!GO:0007346;regulation of progression through mitotic cell cycle;0.00691028305035067!GO:0030880;RNA polymerase complex;0.00691475176767217!GO:0016363;nuclear matrix;0.00691475176767217!GO:0050790;regulation of catalytic activity;0.00691475176767217!GO:0051252;regulation of RNA metabolic process;0.00714483512114271!GO:0006268;DNA unwinding during replication;0.00714483512114271!GO:0045792;negative regulation of cell size;0.00719438674761687!GO:0015992;proton transport;0.00722423277491866!GO:0030308;negative regulation of cell growth;0.0072638049386483!GO:0016311;dephosphorylation;0.00740810379763085!GO:0006595;polyamine metabolic process;0.00746079213376141!GO:0030659;cytoplasmic vesicle membrane;0.00767435956587425!GO:0031072;heat shock protein binding;0.00767435956587425!GO:0006818;hydrogen transport;0.00805412356016522!GO:0008629;induction of apoptosis by intracellular signals;0.00806564820689667!GO:0035258;steroid hormone receptor binding;0.00821673336977763!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00836103181726115!GO:0007265;Ras protein signal transduction;0.00844874036854478!GO:0051087;chaperone binding;0.0086613887025005!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00868305468131085!GO:0012502;induction of programmed cell death;0.00908396897588644!GO:0001836;release of cytochrome c from mitochondria;0.00919184215674928!GO:0044452;nucleolar part;0.00978865400944787!GO:0016741;transferase activity, transferring one-carbon groups;0.00982075396061398!GO:0006220;pyrimidine nucleotide metabolic process;0.00991387718284259!GO:0045892;negative regulation of transcription, DNA-dependent;0.0100838188012998!GO:0006509;membrane protein ectodomain proteolysis;0.0100945475936632!GO:0033619;membrane protein proteolysis;0.0100945475936632!GO:0006401;RNA catabolic process;0.0104288746818668!GO:0016125;sterol metabolic process;0.0105235475110457!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0106988775186877!GO:0008168;methyltransferase activity;0.0107417883296445!GO:0016272;prefoldin complex;0.0107439702455697!GO:0003729;mRNA binding;0.0108738135245967!GO:0000059;protein import into nucleus, docking;0.010931899529016!GO:0043281;regulation of caspase activity;0.0110097905655946!GO:0006383;transcription from RNA polymerase III promoter;0.0112177083617474!GO:0043154;negative regulation of caspase activity;0.0116535953223627!GO:0046483;heterocycle metabolic process;0.0116535953223627!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0116535953223627!GO:0015002;heme-copper terminal oxidase activity;0.0116535953223627!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0116535953223627!GO:0004129;cytochrome-c oxidase activity;0.0116535953223627!GO:0008139;nuclear localization sequence binding;0.0118035500401706!GO:0008286;insulin receptor signaling pathway;0.0118646435253229!GO:0008186;RNA-dependent ATPase activity;0.0118761122031156!GO:0046519;sphingoid metabolic process;0.0120629511414273!GO:0051338;regulation of transferase activity;0.0120678614111786!GO:0008022;protein C-terminus binding;0.012308371841523!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.012416887760804!GO:0000118;histone deacetylase complex;0.0126316128618228!GO:0050662;coenzyme binding;0.0129493740273068!GO:0042168;heme metabolic process;0.013110210395975!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0132239617242216!GO:0000792;heterochromatin;0.0135399873728637!GO:0005869;dynactin complex;0.0138032536179245!GO:0005862;muscle thin filament tropomyosin;0.0140615726670588!GO:0004860;protein kinase inhibitor activity;0.0141032514681232!GO:0003682;chromatin binding;0.0141086884481452!GO:0019206;nucleoside kinase activity;0.0141962115957626!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0142926675535842!GO:0000428;DNA-directed RNA polymerase complex;0.0142926675535842!GO:0044433;cytoplasmic vesicle part;0.014337859000762!GO:0007242;intracellular signaling cascade;0.0143821601799738!GO:0030145;manganese ion binding;0.0143821601799738!GO:0007017;microtubule-based process;0.0144912881570182!GO:0006643;membrane lipid metabolic process;0.0144912881570182!GO:0005774;vacuolar membrane;0.0144912881570182!GO:0006007;glucose catabolic process;0.0145544628799968!GO:0006672;ceramide metabolic process;0.0145597224349689!GO:0006352;transcription initiation;0.0145597224349689!GO:0016791;phosphoric monoester hydrolase activity;0.0148654281855118!GO:0051101;regulation of DNA binding;0.0150089159099753!GO:0006733;oxidoreduction coenzyme metabolic process;0.0151277054076876!GO:0006783;heme biosynthetic process;0.0152575264116646!GO:0003678;DNA helicase activity;0.0155898837397516!GO:0005637;nuclear inner membrane;0.0160576785250921!GO:0006739;NADP metabolic process;0.0162040710528489!GO:0031301;integral to organelle membrane;0.0166951302770386!GO:0004177;aminopeptidase activity;0.0168542720217587!GO:0000096;sulfur amino acid metabolic process;0.0176307988812589!GO:0000049;tRNA binding;0.0178556969786096!GO:0040029;regulation of gene expression, epigenetic;0.0179810988495662!GO:0008283;cell proliferation;0.018459844468214!GO:0006612;protein targeting to membrane;0.0190089661835399!GO:0006066;alcohol metabolic process;0.0196879869792149!GO:0043549;regulation of kinase activity;0.0199173089748459!GO:0003779;actin binding;0.0202015570119245!GO:0031529;ruffle organization and biogenesis;0.0204443316321954!GO:0009112;nucleobase metabolic process;0.0205165767939483!GO:0043492;ATPase activity, coupled to movement of substances;0.0210353213626521!GO:0042393;histone binding;0.0210377557911503!GO:0008538;proteasome activator activity;0.0212144446036357!GO:0051090;regulation of transcription factor activity;0.0216123243820257!GO:0000209;protein polyubiquitination;0.0217777721384088!GO:0046870;cadmium ion binding;0.0220982952329957!GO:0004721;phosphoprotein phosphatase activity;0.022989645125316!GO:0046426;negative regulation of JAK-STAT cascade;0.0230597951203561!GO:0030521;androgen receptor signaling pathway;0.0235801629478989!GO:0043414;biopolymer methylation;0.0239710400660243!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0242506426114801!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0243247409513173!GO:0006497;protein amino acid lipidation;0.0249040233864298!GO:0006519;amino acid and derivative metabolic process;0.0258625928270341!GO:0006284;base-excision repair;0.0258625928270341!GO:0005996;monosaccharide metabolic process;0.0261308134613966!GO:0006289;nucleotide-excision repair;0.0261308134613966!GO:0043433;negative regulation of transcription factor activity;0.0266231461601111!GO:0015631;tubulin binding;0.0267910325436787!GO:0004004;ATP-dependent RNA helicase activity;0.0268035087158084!GO:0046822;regulation of nucleocytoplasmic transport;0.0269533304385574!GO:0006611;protein export from nucleus;0.0269533304385574!GO:0045926;negative regulation of growth;0.0270025385531969!GO:0016197;endosome transport;0.0270646649412327!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.027309375742344!GO:0050178;phenylpyruvate tautomerase activity;0.0279422461221883!GO:0007040;lysosome organization and biogenesis;0.0281674139354641!GO:0048144;fibroblast proliferation;0.0283514872708378!GO:0048145;regulation of fibroblast proliferation;0.0283514872708378!GO:0006458;'de novo' protein folding;0.0283712503389875!GO:0051084;'de novo' posttranslational protein folding;0.0283712503389875!GO:0006302;double-strand break repair;0.0283860852252793!GO:0033559;unsaturated fatty acid metabolic process;0.028452619796384!GO:0006636;unsaturated fatty acid biosynthetic process;0.028452619796384!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0290228973769242!GO:0019318;hexose metabolic process;0.0295044825492624!GO:0009116;nucleoside metabolic process;0.0298114402878343!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.03004114819278!GO:0008625;induction of apoptosis via death domain receptors;0.0303347656781174!GO:0006807;nitrogen compound metabolic process;0.030383262047868!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0315723101079789!GO:0006417;regulation of translation;0.0320000408102691!GO:0030134;ER to Golgi transport vesicle;0.0320874797285209!GO:0009303;rRNA transcription;0.0327262218500063!GO:0048500;signal recognition particle;0.0327770699822189!GO:0006506;GPI anchor biosynthetic process;0.0328672652865442!GO:0005832;chaperonin-containing T-complex;0.0328694134184013!GO:0019887;protein kinase regulator activity;0.032963792624977!GO:0044437;vacuolar part;0.033422848410321!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0334361177752067!GO:0045334;clathrin-coated endocytic vesicle;0.0338377403885749!GO:0035035;histone acetyltransferase binding;0.0340323602660635!GO:0003711;transcription elongation regulator activity;0.0340323602660635!GO:0006749;glutathione metabolic process;0.0343587343095161!GO:0016569;covalent chromatin modification;0.0344308008819758!GO:0006338;chromatin remodeling;0.0345732330383673!GO:0043086;negative regulation of catalytic activity;0.0347410754493151!GO:0008287;protein serine/threonine phosphatase complex;0.0348497628593054!GO:0043189;H4/H2A histone acetyltransferase complex;0.0350534880238629!GO:0003756;protein disulfide isomerase activity;0.0351190050054562!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0351190050054562!GO:0048146;positive regulation of fibroblast proliferation;0.0354544763344765!GO:0009262;deoxyribonucleotide metabolic process;0.0356720055843228!GO:0030032;lamellipodium biogenesis;0.0356720055843228!GO:0009966;regulation of signal transduction;0.0356720055843228!GO:0000086;G2/M transition of mitotic cell cycle;0.0356720055843228!GO:0009124;nucleoside monophosphate biosynthetic process;0.0356720055843228!GO:0009123;nucleoside monophosphate metabolic process;0.0356720055843228!GO:0003746;translation elongation factor activity;0.0357642586664493!GO:0051059;NF-kappaB binding;0.0357642586664493!GO:0051539;4 iron, 4 sulfur cluster binding;0.0357642586664493!GO:0005938;cell cortex;0.0358433811098519!GO:0045859;regulation of protein kinase activity;0.0372199173764344!GO:0007266;Rho protein signal transduction;0.037438577620576!GO:0016584;nucleosome positioning;0.0374741118496085!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0374741118496085!GO:0010257;NADH dehydrogenase complex assembly;0.0374741118496085!GO:0033108;mitochondrial respiratory chain complex assembly;0.0374741118496085!GO:0007050;cell cycle arrest;0.0374992553321748!GO:0006767;water-soluble vitamin metabolic process;0.0375535005520411!GO:0005758;mitochondrial intermembrane space;0.0375845536010677!GO:0005765;lysosomal membrane;0.0377879040987842!GO:0045936;negative regulation of phosphate metabolic process;0.0377879040987842!GO:0000123;histone acetyltransferase complex;0.0382064962698988!GO:0005881;cytoplasmic microtubule;0.0388259826329284!GO:0030508;thiol-disulfide exchange intermediate activity;0.0389922563933468!GO:0007021;tubulin folding;0.0391900699161241!GO:0030663;COPI coated vesicle membrane;0.0393632433588878!GO:0030126;COPI vesicle coat;0.0393632433588878!GO:0030433;ER-associated protein catabolic process;0.0393632433588878!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0393632433588878!GO:0006891;intra-Golgi vesicle-mediated transport;0.0397955811674558!GO:0032906;transforming growth factor-beta2 production;0.0401718895517713!GO:0032909;regulation of transforming growth factor-beta2 production;0.0401718895517713!GO:0006470;protein amino acid dephosphorylation;0.040517771708086!GO:0008426;protein kinase C inhibitor activity;0.0413005137681485!GO:0030384;phosphoinositide metabolic process;0.0413005137681485!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0413523449172057!GO:0009119;ribonucleoside metabolic process;0.0416939200860202!GO:0012506;vesicle membrane;0.0417974733172682!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0418317937237667!GO:0030911;TPR domain binding;0.0422342324381717!GO:0051098;regulation of binding;0.0425163725637194!GO:0006769;nicotinamide metabolic process;0.0425686183377385!GO:0008213;protein amino acid alkylation;0.0426055963810638!GO:0006479;protein amino acid methylation;0.0426055963810638!GO:0000305;response to oxygen radical;0.0427689807628374!GO:0051052;regulation of DNA metabolic process;0.0428261052255219!GO:0043130;ubiquitin binding;0.0428261052255219!GO:0032182;small conjugating protein binding;0.0428261052255219!GO:0008652;amino acid biosynthetic process;0.0438266161493724!GO:0043022;ribosome binding;0.0440551353202545!GO:0032594;protein transport within lipid bilayer;0.0443124123646064!GO:0032907;transforming growth factor-beta3 production;0.0443124123646064!GO:0032596;protein transport into lipid raft;0.0443124123646064!GO:0032910;regulation of transforming growth factor-beta3 production;0.0443124123646064!GO:0032595;B cell receptor transport within lipid bilayer;0.0443124123646064!GO:0033606;chemokine receptor transport within lipid bilayer;0.0443124123646064!GO:0032600;chemokine receptor transport out of lipid raft;0.0443124123646064!GO:0032599;protein transport out of lipid raft;0.0443124123646064!GO:0032597;B cell receptor transport into lipid raft;0.0443124123646064!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0443124123646064!GO:0031970;organelle envelope lumen;0.0443311652299394!GO:0032259;methylation;0.044392763624094!GO:0051540;metal cluster binding;0.044392763624094!GO:0051536;iron-sulfur cluster binding;0.044392763624094!GO:0016860;intramolecular oxidoreductase activity;0.0454037883517595!GO:0030496;midbody;0.0454037883517595!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0454037883517595!GO:0045039;protein import into mitochondrial inner membrane;0.0454037883517595!GO:0035267;NuA4 histone acetyltransferase complex;0.0454037883517595!GO:0006144;purine base metabolic process;0.0458386890519419!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0461164689264689!GO:0012510;trans-Golgi network transport vesicle membrane;0.0461164689264689!GO:0042158;lipoprotein biosynthetic process;0.0469295663940491!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0469976127851812!GO:0031124;mRNA 3'-end processing;0.0475718506746632!GO:0004722;protein serine/threonine phosphatase activity;0.0475718506746632!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0478022545767806!GO:0007093;mitotic cell cycle checkpoint;0.0480394669026484!GO:0048037;cofactor binding;0.0482664839214618!GO:0007033;vacuole organization and biogenesis;0.0482792576430171!GO:0008312;7S RNA binding;0.0486062646745968!GO:0009308;amine metabolic process;0.0486062646745968!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.048624457073525!GO:0030137;COPI-coated vesicle;0.0499001938882261 | |||
|sample_id=11676 | |sample_id=11676 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=XCPE1{core}:1.94685897151;HNF1A:1.34566068545;TFAP2{A,C}:1.23175794841;POU2F1..3:1.23028095355;NKX2-3_NKX2-5:1.16638715468;ZNF148:1.12500743321;RXRA_VDR{dimer}:1.07036770156;EBF1:1.06407230468;ZIC1..3:1.06118154671;SNAI1..3:1.02515153865;ESRRA:1.02349768143;ZEB1:1.02190827135;MYOD1:0.946147464753;GTF2A1,2:0.930551282122;PBX1:0.89555763048;RXR{A,B,G}:0.870454923155;TFCP2:0.836934065906;ZNF423:0.812381851815;HOX{A5,B5}:0.782375449367;SP1:0.782175719855;TFAP2B:0.767404302183;POU3F1..4:0.747780890474;NR6A1:0.746022241729;TEAD1:0.714669434388;GZF1:0.674055649979;HIC1:0.623999554021;TP53:0.590870061338;NR5A1,2:0.583732466901;TFDP1:0.579673341137;NR1H4:0.575809957813;MTF1:0.559162823226;LEF1_TCF7_TCF7L1,2:0.556621718192;TBX4,5:0.554480620815;ESR1:0.552368797398;SOX{8,9,10}:0.547697993087;GFI1:0.526557189078;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.523056923883;ADNP_IRX_SIX_ZHX:0.511227230255;LHX3,4:0.504168297607;E2F1..5:0.486575773388;LMO2:0.465444286605;GLI1..3:0.457670755735;RREB1:0.435128994494;NFY{A,B,C}:0.42135453801;SPZ1:0.397386390495;ONECUT1,2:0.383507035772;POU5F1:0.365475547249;PPARG:0.342324058976;bHLH_family:0.337111519082;GFI1B:0.306564149398;PITX1..3:0.287445262705;BACH2:0.250761683471;FOXQ1:0.197976040455;ZBTB6:0.192343126169;FOS_FOS{B,L1}_JUN{B,D}:0.188951727431;HNF4A_NR2F1,2:0.187155122819;TLX1..3_NFIC{dimer}:0.185291792635;VSX1,2:0.180585415258;IKZF1:0.165117934349;STAT5{A,B}:0.161256890058;SOX2:0.157588275924;TBP:0.157453775207;NR3C1:0.157286829106;SRF:0.150877208369;NFE2L1:0.150616372123;EP300:0.149047743238;FOSL2:0.115535146984;PAX5:0.112899703776;HAND1,2:0.112838474199;UFEwm:0.0985238230099;PRRX1,2:0.0935373638174;PAX8:0.0878589437149;TEF:0.0863823755492;JUN:0.0682588262571;MAZ:0.0668992954069;NFE2:0.0618964039406;NFE2L2:0.0606742679735;HOX{A6,A7,B6,B7}:0.0364551311045;CRX:0.0314550009977;HOXA9_MEIS1:-0.00604588082358;TFAP4:-0.0329702382672;PATZ1:-0.0363763021672;ZNF143:-0.0398077139626;POU1F1:-0.0507085351476;GTF2I:-0.0612026681228;SOX17:-0.0729319787946;MED-1{core}:-0.0731418085678;NFKB1_REL_RELA:-0.0802812839396;HES1:-0.0923309436392;STAT2,4,6:-0.115040950982;KLF4:-0.132072560087;AR:-0.132898433533;REST:-0.13833377921;MTE{core}:-0.146103898918;ALX1:-0.147074819649;NANOG:-0.150679070993;ALX4:-0.154858142702;TOPORS:-0.161733372915;CUX2:-0.206130974496;GCM1,2:-0.210444670687;MYB:-0.212668106084;EGR1..3:-0.234913849713;EN1,2:-0.247329415469;PAX6:-0.259082655906;OCT4_SOX2{dimer}:-0.263689274151;MEF2{A,B,C,D}:-0.272574291282;ZFP161:-0.273956752884;RORA:-0.308528007422;RUNX1..3:-0.339340249224;DBP:-0.3606276731;FOXM1:-0.366071741535;HLF:-0.374529903417;ETS1,2:-0.383109070434;ATF2:-0.386783084424;GATA6:-0.401837321236;MZF1:-0.40487879057;NKX3-1:-0.467810672359;NHLH1,2:-0.481735868203;MYBL2:-0.502381397297;AIRE:-0.505216165443;FOXL1:-0.508360813855;TAL1_TCF{3,4,12}:-0.513517626072;CDC5L:-0.523707001316;SPIB:-0.530138691954;RFX1:-0.530692880161;POU6F1:-0.542899182172;YY1:-0.549423505253;CEBPA,B_DDIT3:-0.549593374615;BREu{core}:-0.561481763451;NKX3-2:-0.576443124114;ELK1,4_GABP{A,B1}:-0.577904523879;SOX5:-0.598703233908;T:-0.60867742742;ATF6:-0.612762487742;SPI1:-0.640004657565;NRF1:-0.642579683395;ZNF384:-0.643877267089;FOX{F1,F2,J1}:-0.656611138048;SMAD1..7,9:-0.672041892295;FOXD3:-0.681983817698;HOX{A4,D4}:-0.70071899155;PAX1,9:-0.700743254307;HBP1_HMGB_SSRP1_UBTF:-0.714227888463;NKX2-2,8:-0.726520916276;CDX1,2,4:-0.728717703999;HMX1:-0.733949113025;ARID5B:-0.751261263996;ZNF238:-0.755135033341;FOXP1:-0.767825291115;PRDM1:-0.768450166062;XBP1:-0.772289032237;NFIL3:-0.797393793286;HSF1,2:-0.804908154326;ATF4:-0.851566834593;NKX6-1,2:-0.899555473937;TLX2:-0.908397599733;ATF5_CREB3:-0.910732590239;PAX3,7:-0.918610972296;IRF7:-0.91984191492;RFX2..5_RFXANK_RFXAP:-0.920371695429;DMAP1_NCOR{1,2}_SMARC:-0.93970665895;FOX{D1,D2}:-0.96881090477;MYFfamily:-0.99190286865;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01506514926;IRF1,2:-1.01561280978;PDX1:-1.0342421575;SREBF1,2:-1.05082337004;PAX2:-1.06682232624;NFATC1..3:-1.08999938174;NANOG{mouse}:-1.09235737045;NFIX:-1.10014753104;FOX{I1,J2}:-1.1060706213;NKX2-1,4:-1.12234657826;IKZF2:-1.13675326178;STAT1,3:-1.13794949027;FOXA2:-1.14608689852;FOXP3:-1.15588051564;CREB1:-1.16435608557;ELF1,2,4:-1.16539677297;EVI1:-1.20014981029;TGIF1:-1.26504187471;FOXO1,3,4:-1.28474389078;AHR_ARNT_ARNT2:-1.28583759939;PAX4:-1.37168208664;FOXN1:-1.4736402266;GATA4:-1.47487395033;ZBTB16:-1.53405865989;HMGA1,2:-1.54065770165;BPTF:-1.57191945648;MAFB:-1.58235738788;HIF1A:-1.78387977265;RBPJ:-1.81394557343 | |top_motifs=XCPE1{core}:1.94685897151;HNF1A:1.34566068545;TFAP2{A,C}:1.23175794841;POU2F1..3:1.23028095355;NKX2-3_NKX2-5:1.16638715468;ZNF148:1.12500743321;RXRA_VDR{dimer}:1.07036770156;EBF1:1.06407230468;ZIC1..3:1.06118154671;SNAI1..3:1.02515153865;ESRRA:1.02349768143;ZEB1:1.02190827135;MYOD1:0.946147464753;GTF2A1,2:0.930551282122;PBX1:0.89555763048;RXR{A,B,G}:0.870454923155;TFCP2:0.836934065906;ZNF423:0.812381851815;HOX{A5,B5}:0.782375449367;SP1:0.782175719855;TFAP2B:0.767404302183;POU3F1..4:0.747780890474;NR6A1:0.746022241729;TEAD1:0.714669434388;GZF1:0.674055649979;HIC1:0.623999554021;TP53:0.590870061338;NR5A1,2:0.583732466901;TFDP1:0.579673341137;NR1H4:0.575809957813;MTF1:0.559162823226;LEF1_TCF7_TCF7L1,2:0.556621718192;TBX4,5:0.554480620815;ESR1:0.552368797398;SOX{8,9,10}:0.547697993087;GFI1:0.526557189078;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.523056923883;ADNP_IRX_SIX_ZHX:0.511227230255;LHX3,4:0.504168297607;E2F1..5:0.486575773388;LMO2:0.465444286605;GLI1..3:0.457670755735;RREB1:0.435128994494;NFY{A,B,C}:0.42135453801;SPZ1:0.397386390495;ONECUT1,2:0.383507035772;POU5F1:0.365475547249;PPARG:0.342324058976;bHLH_family:0.337111519082;GFI1B:0.306564149398;PITX1..3:0.287445262705;BACH2:0.250761683471;FOXQ1:0.197976040455;ZBTB6:0.192343126169;FOS_FOS{B,L1}_JUN{B,D}:0.188951727431;HNF4A_NR2F1,2:0.187155122819;TLX1..3_NFIC{dimer}:0.185291792635;VSX1,2:0.180585415258;IKZF1:0.165117934349;STAT5{A,B}:0.161256890058;SOX2:0.157588275924;TBP:0.157453775207;NR3C1:0.157286829106;SRF:0.150877208369;NFE2L1:0.150616372123;EP300:0.149047743238;FOSL2:0.115535146984;PAX5:0.112899703776;HAND1,2:0.112838474199;UFEwm:0.0985238230099;PRRX1,2:0.0935373638174;PAX8:0.0878589437149;TEF:0.0863823755492;JUN:0.0682588262571;MAZ:0.0668992954069;NFE2:0.0618964039406;NFE2L2:0.0606742679735;HOX{A6,A7,B6,B7}:0.0364551311045;CRX:0.0314550009977;HOXA9_MEIS1:-0.00604588082358;TFAP4:-0.0329702382672;PATZ1:-0.0363763021672;ZNF143:-0.0398077139626;POU1F1:-0.0507085351476;GTF2I:-0.0612026681228;SOX17:-0.0729319787946;MED-1{core}:-0.0731418085678;NFKB1_REL_RELA:-0.0802812839396;HES1:-0.0923309436392;STAT2,4,6:-0.115040950982;KLF4:-0.132072560087;AR:-0.132898433533;REST:-0.13833377921;MTE{core}:-0.146103898918;ALX1:-0.147074819649;NANOG:-0.150679070993;ALX4:-0.154858142702;TOPORS:-0.161733372915;CUX2:-0.206130974496;GCM1,2:-0.210444670687;MYB:-0.212668106084;EGR1..3:-0.234913849713;EN1,2:-0.247329415469;PAX6:-0.259082655906;OCT4_SOX2{dimer}:-0.263689274151;MEF2{A,B,C,D}:-0.272574291282;ZFP161:-0.273956752884;RORA:-0.308528007422;RUNX1..3:-0.339340249224;DBP:-0.3606276731;FOXM1:-0.366071741535;HLF:-0.374529903417;ETS1,2:-0.383109070434;ATF2:-0.386783084424;GATA6:-0.401837321236;MZF1:-0.40487879057;NKX3-1:-0.467810672359;NHLH1,2:-0.481735868203;MYBL2:-0.502381397297;AIRE:-0.505216165443;FOXL1:-0.508360813855;TAL1_TCF{3,4,12}:-0.513517626072;CDC5L:-0.523707001316;SPIB:-0.530138691954;RFX1:-0.530692880161;POU6F1:-0.542899182172;YY1:-0.549423505253;CEBPA,B_DDIT3:-0.549593374615;BREu{core}:-0.561481763451;NKX3-2:-0.576443124114;ELK1,4_GABP{A,B1}:-0.577904523879;SOX5:-0.598703233908;T:-0.60867742742;ATF6:-0.612762487742;SPI1:-0.640004657565;NRF1:-0.642579683395;ZNF384:-0.643877267089;FOX{F1,F2,J1}:-0.656611138048;SMAD1..7,9:-0.672041892295;FOXD3:-0.681983817698;HOX{A4,D4}:-0.70071899155;PAX1,9:-0.700743254307;HBP1_HMGB_SSRP1_UBTF:-0.714227888463;NKX2-2,8:-0.726520916276;CDX1,2,4:-0.728717703999;HMX1:-0.733949113025;ARID5B:-0.751261263996;ZNF238:-0.755135033341;FOXP1:-0.767825291115;PRDM1:-0.768450166062;XBP1:-0.772289032237;NFIL3:-0.797393793286;HSF1,2:-0.804908154326;ATF4:-0.851566834593;NKX6-1,2:-0.899555473937;TLX2:-0.908397599733;ATF5_CREB3:-0.910732590239;PAX3,7:-0.918610972296;IRF7:-0.91984191492;RFX2..5_RFXANK_RFXAP:-0.920371695429;DMAP1_NCOR{1,2}_SMARC:-0.93970665895;FOX{D1,D2}:-0.96881090477;MYFfamily:-0.99190286865;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01506514926;IRF1,2:-1.01561280978;PDX1:-1.0342421575;SREBF1,2:-1.05082337004;PAX2:-1.06682232624;NFATC1..3:-1.08999938174;NANOG{mouse}:-1.09235737045;NFIX:-1.10014753104;FOX{I1,J2}:-1.1060706213;NKX2-1,4:-1.12234657826;IKZF2:-1.13675326178;STAT1,3:-1.13794949027;FOXA2:-1.14608689852;FOXP3:-1.15588051564;CREB1:-1.16435608557;ELF1,2,4:-1.16539677297;EVI1:-1.20014981029;TGIF1:-1.26504187471;FOXO1,3,4:-1.28474389078;AHR_ARNT_ARNT2:-1.28583759939;PAX4:-1.37168208664;FOXN1:-1.4736402266;GATA4:-1.47487395033;ZBTB16:-1.53405865989;HMGA1,2:-1.54065770165;BPTF:-1.57191945648;MAFB:-1.58235738788;HIF1A:-1.78387977265;RBPJ:-1.81394557343 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11676-122H2;search_select_hide=table117:FF:11676-122H2 | |||
}} | }} | ||
Latest revision as of 18:14, 4 June 2020
| Name: | Renal Proximal Tubular Epithelial Cell, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12120 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12120
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12120
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.52 |
| 10 | 10 | 0.155 |
| 100 | 100 | 0.0793 |
| 101 | 101 | 0.0395 |
| 102 | 102 | 0.379 |
| 103 | 103 | 0.325 |
| 104 | 104 | 0.547 |
| 105 | 105 | 0.17 |
| 106 | 106 | 0.0432 |
| 107 | 107 | 9.93439e-4 |
| 108 | 108 | 0.338 |
| 109 | 109 | 0.407 |
| 11 | 11 | 0.48 |
| 110 | 110 | 0.344 |
| 111 | 111 | 0.786 |
| 112 | 112 | 0.301 |
| 113 | 113 | 0.187 |
| 114 | 114 | 0.108 |
| 115 | 115 | 0.334 |
| 116 | 116 | 0.268 |
| 117 | 117 | 0.801 |
| 118 | 118 | 0.517 |
| 119 | 119 | 0.275 |
| 12 | 12 | 0.873 |
| 120 | 120 | 0.476 |
| 121 | 121 | 0.785 |
| 122 | 122 | 0.407 |
| 123 | 123 | 0.291 |
| 124 | 124 | 0.222 |
| 125 | 125 | 0.294 |
| 126 | 126 | 0.561 |
| 127 | 127 | 0.333 |
| 128 | 128 | 0.298 |
| 129 | 129 | 0.381 |
| 13 | 13 | 0.25 |
| 130 | 130 | 0.155 |
| 131 | 131 | 0.0717 |
| 132 | 132 | 0.0661 |
| 133 | 133 | 0.125 |
| 134 | 134 | 0.623 |
| 135 | 135 | 0.81 |
| 136 | 136 | 0.0768 |
| 137 | 137 | 0.0311 |
| 138 | 138 | 0.0536 |
| 139 | 139 | 0.127 |
| 14 | 14 | 0.621 |
| 140 | 140 | 0.625 |
| 141 | 141 | 0.345 |
| 142 | 142 | 0.704 |
| 143 | 143 | 0.547 |
| 144 | 144 | 0.793 |
| 145 | 145 | 0.229 |
| 146 | 146 | 0.0492 |
| 147 | 147 | 0.657 |
| 148 | 148 | 0.126 |
| 149 | 149 | 0.915 |
| 15 | 15 | 0.544 |
| 150 | 150 | 0.13 |
| 151 | 151 | 0.565 |
| 152 | 152 | 0.0527 |
| 153 | 153 | 0.095 |
| 154 | 154 | 0.306 |
| 155 | 155 | 0.686 |
| 156 | 156 | 0.463 |
| 157 | 157 | 0.627 |
| 158 | 158 | 0.201 |
| 159 | 159 | 0.756 |
| 16 | 16 | 0.445 |
| 160 | 160 | 0.0473 |
| 161 | 161 | 0.58 |
| 162 | 162 | 0.0393 |
| 163 | 163 | 0.954 |
| 164 | 164 | 0.224 |
| 165 | 165 | 0.0798 |
| 166 | 166 | 0.97 |
| 167 | 167 | 0.368 |
| 168 | 168 | 0.144 |
| 169 | 169 | 0.203 |
| 17 | 17 | 0.256 |
| 18 | 18 | 0.799 |
| 19 | 19 | 0.699 |
| 2 | 2 | 0.23 |
| 20 | 20 | 0.982 |
| 21 | 21 | 0.698 |
| 22 | 22 | 0.262 |
| 23 | 23 | 0.718 |
| 24 | 24 | 0.869 |
| 25 | 25 | 0.571 |
| 26 | 26 | 0.131 |
| 27 | 27 | 0.306 |
| 28 | 28 | 0.316 |
| 29 | 29 | 0.866 |
| 3 | 3 | 0.479 |
| 30 | 30 | 0.118 |
| 31 | 31 | 0.497 |
| 32 | 32 | 0.927 |
| 33 | 33 | 0.122 |
| 34 | 34 | 0.262 |
| 35 | 35 | 0.172 |
| 36 | 36 | 0.826 |
| 37 | 37 | 0.378 |
| 38 | 38 | 0.546 |
| 39 | 39 | 0.343 |
| 4 | 4 | 0.442 |
| 40 | 40 | 0.00277 |
| 41 | 41 | 0.288 |
| 42 | 42 | 0.485 |
| 43 | 43 | 0.918 |
| 44 | 44 | 0.883 |
| 45 | 45 | 0.154 |
| 46 | 46 | 0.757 |
| 47 | 47 | 0.658 |
| 48 | 48 | 0.34 |
| 49 | 49 | 0.48 |
| 5 | 5 | 0.302 |
| 50 | 50 | 0.213 |
| 51 | 51 | 0.358 |
| 52 | 52 | 0.282 |
| 53 | 53 | 0.494 |
| 54 | 54 | 0.52 |
| 55 | 55 | 0.766 |
| 56 | 56 | 0.189 |
| 57 | 57 | 0.945 |
| 58 | 58 | 0.301 |
| 59 | 59 | 0.0471 |
| 6 | 6 | 0.373 |
| 60 | 60 | 0.47 |
| 61 | 61 | 0.438 |
| 62 | 62 | 0.209 |
| 63 | 63 | 0.303 |
| 64 | 64 | 0.414 |
| 65 | 65 | 0.11 |
| 66 | 66 | 0.117 |
| 67 | 67 | 0.461 |
| 68 | 68 | 0.88 |
| 69 | 69 | 0.0286 |
| 7 | 7 | 0.968 |
| 70 | 70 | 0.461 |
| 71 | 71 | 0.491 |
| 72 | 72 | 0.276 |
| 73 | 73 | 0.0456 |
| 74 | 74 | 0.0953 |
| 75 | 75 | 0.754 |
| 76 | 76 | 0.117 |
| 77 | 77 | 0.0154 |
| 78 | 78 | 0.428 |
| 79 | 79 | 0.81 |
| 8 | 8 | 0.225 |
| 80 | 80 | 0.0996 |
| 81 | 81 | 0.117 |
| 82 | 82 | 0.269 |
| 83 | 83 | 0.876 |
| 84 | 84 | 0.6 |
| 85 | 85 | 0.449 |
| 86 | 86 | 0.54 |
| 87 | 87 | 0.0541 |
| 88 | 88 | 0.621 |
| 89 | 89 | 0.589 |
| 9 | 9 | 0.718 |
| 90 | 90 | 0.0293 |
| 91 | 91 | 0.981 |
| 92 | 92 | 0.437 |
| 93 | 93 | 0.203 |
| 94 | 94 | 0.365 |
| 95 | 95 | 0.361 |
| 96 | 96 | 0.313 |
| 97 | 97 | 0.704 |
| 98 | 98 | 0.705 |
| 99 | 99 | 2.6779e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12120
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000155 human renal proximal tubular epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
