FF:11678-122H4: Difference between revisions

Latest revision as of 18:14, 4 June 2020

Name:	Renal Epithelial Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12732
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell of kidney
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2265
catalog number	SC4125
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005666

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12732		CAGE		DRX008429		DRR009301

Accession ID Hg19

Library id		BAM		CTSS
CNhs12732		DRZ000726		DRZ002111

Accession ID Hg38

Library id		BAM		CTSS
CNhs12732		DRZ012076		DRZ013461

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.146
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.251
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00392
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.11
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.163
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.186
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.173
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.213
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0661
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.03
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.184
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.179
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.119
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.233
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.197
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.153
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12732

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0541
MA0003.1	MA0003.1	0.97
MA0004.1	MA0004.1	0.0255
MA0006.1	MA0006.1	0.0293
MA0007.1	MA0007.1	0.545
MA0009.1	MA0009.1	0.0625
MA0014.1	MA0014.1	0.205
MA0017.1	MA0017.1	0.917
MA0018.2	MA0018.2	0.962
MA0019.1	MA0019.1	0.102
MA0024.1	MA0024.1	0.0274
MA0025.1	MA0025.1	0.964
MA0027.1	MA0027.1	0.646
MA0028.1	MA0028.1	0.51
MA0029.1	MA0029.1	0.951
MA0030.1	MA0030.1	0.814
MA0031.1	MA0031.1	0.278
MA0035.2	MA0035.2	0.411
MA0038.1	MA0038.1	0.00581
MA0039.2	MA0039.2	0.0187
MA0040.1	MA0040.1	0.548
MA0041.1	MA0041.1	0.573
MA0042.1	MA0042.1	0.591
MA0043.1	MA0043.1	0.738
MA0046.1	MA0046.1	4.78681e-27
MA0047.2	MA0047.2	0.383
MA0048.1	MA0048.1	0.35
MA0050.1	MA0050.1	0.00591
MA0051.1	MA0051.1	0.503
MA0052.1	MA0052.1	0.373
MA0055.1	MA0055.1	0.438
MA0057.1	MA0057.1	0.611
MA0058.1	MA0058.1	0.00215
MA0059.1	MA0059.1	0.0728
MA0060.1	MA0060.1	0.00102
MA0061.1	MA0061.1	0.802
MA0062.2	MA0062.2	4.68479e-4
MA0065.2	MA0065.2	0.395
MA0066.1	MA0066.1	0.921
MA0067.1	MA0067.1	0.0223
MA0068.1	MA0068.1	0.199
MA0069.1	MA0069.1	0.245
MA0070.1	MA0070.1	0.0482
MA0071.1	MA0071.1	0.525
MA0072.1	MA0072.1	0.557
MA0073.1	MA0073.1	0.905
MA0074.1	MA0074.1	0.937
MA0076.1	MA0076.1	0.0237
MA0077.1	MA0077.1	0.0152
MA0078.1	MA0078.1	0.887
MA0079.2	MA0079.2	0.822
MA0080.2	MA0080.2	5.14599e-7
MA0081.1	MA0081.1	0.00561
MA0083.1	MA0083.1	0.215
MA0084.1	MA0084.1	0.0845
MA0087.1	MA0087.1	0.927
MA0088.1	MA0088.1	0.484
MA0090.1	MA0090.1	0.00355
MA0091.1	MA0091.1	0.00104
MA0092.1	MA0092.1	0.211
MA0093.1	MA0093.1	0.0317
MA0099.2	MA0099.2	0.00142
MA0100.1	MA0100.1	0.647
MA0101.1	MA0101.1	0.394
MA0102.2	MA0102.2	0.138
MA0103.1	MA0103.1	1.38242e-5
MA0104.2	MA0104.2	0.0162
MA0105.1	MA0105.1	0.0891
MA0106.1	MA0106.1	0.0602
MA0107.1	MA0107.1	0.364
MA0108.2	MA0108.2	0.0315
MA0111.1	MA0111.1	0.507
MA0112.2	MA0112.2	0.0838
MA0113.1	MA0113.1	0.118
MA0114.1	MA0114.1	0.659
MA0115.1	MA0115.1	0.716
MA0116.1	MA0116.1	0.00901
MA0117.1	MA0117.1	0.298
MA0119.1	MA0119.1	0.0686
MA0122.1	MA0122.1	0.362
MA0124.1	MA0124.1	0.272
MA0125.1	MA0125.1	0.207
MA0131.1	MA0131.1	0.34
MA0135.1	MA0135.1	0.253
MA0136.1	MA0136.1	1.05081e-4
MA0137.2	MA0137.2	0.93
MA0138.2	MA0138.2	0.0821
MA0139.1	MA0139.1	0.836
MA0140.1	MA0140.1	0.073
MA0141.1	MA0141.1	0.0212
MA0142.1	MA0142.1	0.216
MA0143.1	MA0143.1	0.785
MA0144.1	MA0144.1	0.788
MA0145.1	MA0145.1	0.0791
MA0146.1	MA0146.1	0.432
MA0147.1	MA0147.1	0.0246
MA0148.1	MA0148.1	0.136
MA0149.1	MA0149.1	0.302
MA0150.1	MA0150.1	0.0968
MA0152.1	MA0152.1	0.251
MA0153.1	MA0153.1	8.36236e-23
MA0154.1	MA0154.1	0.266
MA0155.1	MA0155.1	0.827
MA0156.1	MA0156.1	0.0018
MA0157.1	MA0157.1	0.308
MA0159.1	MA0159.1	0.69
MA0160.1	MA0160.1	0.0484
MA0162.1	MA0162.1	0.254
MA0163.1	MA0163.1	9.28295e-4
MA0164.1	MA0164.1	0.731
MA0258.1	MA0258.1	0.021
MA0259.1	MA0259.1	0.206

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12732

Novel motif	Logo	P-value
1	1	0.0645
10	10	0.00927
100	100	0.948
101	101	0.0443
102	102	0.458
103	103	0.796
104	104	0.786
105	105	0.944
106	106	0.805
107	107	0.0562
108	108	0.816
109	109	0.26
11	11	0.125
110	110	0.128
111	111	0.412
112	112	0.187
113	113	0.328
114	114	0.00112
115	115	0.236
116	116	0.245
117	117	0.0402
118	118	0.588
119	119	0.952
12	12	0.106
120	120	0.375
121	121	0.614
122	122	0.288
123	123	0.00788
124	124	0.125
125	125	0.439
126	126	0.731
127	127	0.306
128	128	0.741
129	129	0.132
13	13	0.703
130	130	0.21
131	131	0.205
132	132	0.15
133	133	0.0978
134	134	0.234
135	135	0.447
136	136	0.533
137	137	0.0945
138	138	0.217
139	139	3.36072e-4
14	14	0.782
140	140	0.264
141	141	0.244
142	142	0.445
143	143	0.629
144	144	0.919
145	145	0.831
146	146	0.248
147	147	0.477
148	148	0.119
149	149	0.678
15	15	0.418
150	150	0.971
151	151	0.526
152	152	0.0695
153	153	0.61
154	154	0.416
155	155	0.357
156	156	0.8
157	157	0.655
158	158	0.203
159	159	0.749
16	16	0.747
160	160	0.736
161	161	0.485
162	162	0.432
163	163	0.343
164	164	0.237
165	165	0.307
166	166	0.789
167	167	0.738
168	168	0.788
169	169	0.535
17	17	0.593
18	18	0.166
19	19	0.11
2	2	0.771
20	20	0.885
21	21	0.296
22	22	0.609
23	23	0.545
24	24	0.514
25	25	0.433
26	26	0.0996
27	27	0.871
28	28	0.789
29	29	0.634
3	3	0.164
30	30	0.0748
31	31	0.876
32	32	0.0172
33	33	0.195
34	34	0.509
35	35	0.00139
36	36	0.42
37	37	0.676
38	38	0.759
39	39	0.331
4	4	0.571
40	40	0.309
41	41	0.0415
42	42	0.344
43	43	0.162
44	44	0.347
45	45	0.391
46	46	0.0763
47	47	0.473
48	48	0.494
49	49	0.0343
5	5	0.302
50	50	0.421
51	51	0.946
52	52	0.618
53	53	0.181
54	54	0.834
55	55	0.0361
56	56	0.483
57	57	0.344
58	58	0.184
59	59	0.885
6	6	0.206
60	60	0.394
61	61	0.4
62	62	0.0482
63	63	0.934
64	64	0.2
65	65	0.548
66	66	0.133
67	67	0.325
68	68	0.0828
69	69	0.738
7	7	0.313
70	70	0.00382
71	71	0.0294
72	72	0.912
73	73	0.753
74	74	0.192
75	75	0.068
76	76	0.129
77	77	0.521
78	78	0.483
79	79	0.824
8	8	0.322
80	80	0.153
81	81	0.0406
82	82	0.0934
83	83	0.256
84	84	0.935
85	85	0.02
86	86	0.151
87	87	0.37
88	88	0.996
89	89	0.635
9	9	0.4
90	90	0.874
91	91	0.198
92	92	0.365
93	93	0.379
94	94	0.155
95	95	0.603
96	96	0.631
97	97	0.908
98	98	0.0191
99	99	0.0124

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12732

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000151 human renal epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
1000494 (nephron tubule epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005666
-|accession_numbers=CAGE;DRX008429;DRR009301;DRZ000726;DRZ002111
+|accession_numbers=CAGE;DRX008429;DRR009301;DRZ000726;DRZ002111;DRZ012076;DRZ013461
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0007684,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:1000449,CL:1000507,CL:1000494
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:36105042..36105060,-!p1@HNF1B!1.95!87.92!HNF1B;;chr17:46703687..46703740,-!p1@HOXB9!1.84!68.29!HOXB9;;chr2:114036488..114036504,-!p1@PAX8!1.73!52.14!PAX8;;chr1:201979703..201979721,+!p2@ELF3!1.71!49.71!ELF3;;chr12:66218598..66218645,+!p2@HMGA2!1.66!197.70!HMGA2;;chr17:35294075..35294102,+!p1@ENST00000559335!1.64!42.43!LHX1;;chr17:46682321..46682362,-!p1@HOXB6!1.63!41.27!HOXB6;;chr12:66218255..66218304,+!p3@HMGA2!1.58!96.05!HMGA2;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.83!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.54!37.37!IRF6;;chr17:46703826..46703845,-!p3@HOXB9!1.53!33.25!HOXB9;;chr7:27205136..27205164,-!p1@HOXA9!1.45!27.44!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.44!26.60!POU3F3;;chr12:66218183..66218209,+!p4@HMGA2!1.33!38.63!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.29!18.37!HOXA9;;chr7:27153454..27153469,-!p2@HOXA3!1.28!17.84!HOXA3;;chr16:86600426..86600441,+!p1@FOXC2!1.25!41.38!FOXC2;;chr12:66218212..66218244,+!p5@HMGA2!1.25!24.28!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.21!15.30!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.20!14.67!HOXA3;;chr3:141043020..141043049,+!p17@ZBTB38!1.19!14.36!ZBTB38;;chr17:46622205..46622218,-!p3@HOXB2!1.18!16.36!HOXB2;;chr3:69811858..69811881,+!p5@MITF!1.18!14.14!MITF;;chr12:66218836..66218888,+!p1@HMGA2!1.16!123.92!HMGA2;;chr3:69811882..69811898,+!p6@MITF!1.16!13.30!MITF;;chr7:27183291..27183324,-!p1@HOXA5!1.14!12.88!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!1.12!12.03!HOXA5;;chr7:26191809..26191890,+!p1@NFE2L3!1.10!57.42!NFE2L3;;chr12:66218443..66218461,+!p8@HMGA2!1.10!14.88!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.09!17.52!HMGA2;;chr6:50786591..50786614,+!p1@TFAP2B!1.08!11.08!TFAP2B;;chr12:54378923..54378966,+!p1@HOXC10!1.06!10.56!HOXC10;;chr2:177053386..177053402,+!p1@HOXD1!1.06!10.56!HOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.06!10.45!HOXA11;;chr12:66218003..66218018,+!p9@HMGA2!1.05!12.35!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.04!14.99!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.57!HOXB7;;chr2:5832508..5832524,+!p1@SOX11!1.03!9.82!SOX11;;chr2:176994408..176994492,+!p1@HOXD8!1.03!9.61!HOXD8;;chr17:46622229..46622257,-!p6@HOXB2!1.02!11.08!HOXB2;;chr7:27224842..27224872,-!p1@HOXA11!1.01!9.29!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.18!HOXC9;;chr6:10412600..10412637,-!p1@TFAP2A!1.00!15.30!TFAP2A;;chr7:27196217..27196246,-!p2@HOXA7!1.00!9.08!HOXA7;;chr6:34204921..34204939,+!p3@HMGA1!0.99!268.42!HMGA1;;chr3:141043050..141043063,+!p22@ZBTB38!0.99!8.76!ZBTB38;;chr17:46622440..46622477,-!p5@HOXB2!0.97!9.39!HOXB2;;chr20:6748325..6748352,+!p1@BMP2!0.96!11.82!BMP2;;chr6:21597765..21597779,+!p2@SOX4!0.95!66.60!SOX4;;chr6:10415276..10415341,-!p2@TFAP2A!0.94!9.50!TFAP2A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.94!7.71!HOXC5;;chr5:124082322..124082364,-!p1@ZNF608!0.92!19.42!ZNF608;;chr7:27170359..27170381,-!p1@HOXA4!0.92!7.39!HOXA4;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.28!KDM5D;;chr21:38071430..38071456,+!p1@SIM2!0.91!7.18!SIM2;;chr12:66218420..66218439,+!p12@HMGA2!0.90!6.97!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!0.89!808.21!HMGA1;;chr5:124082580..124082603,-!p4@ZNF608!0.89!7.81!ZNF608;;chr2:177016336..177016350,+!p1@HOXD4!0.89!6.76!HOXD4;;chr10:102505493..102505546,+!p2@PAX2!0.88!6.54!PAX2;;chr15:83953397..83953425,-!p1@BNC1!0.87!7.39!BNC1;;chr2:176969097..176969109,+!p3@HOXD11!0.86!6.23!HOXD11;;chr11:61520075..61520136,+!p1@C11orf9!0.85!13.51!C11orf9;;chr7:27213893..27213954,-!p1@HOXA10!0.85!6.02!HOXA10;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.81!FOXC2;;chr16:51185172..51185197,-!p1@SALL1!0.83!5.70!SALL1;;chr19:20278043..20278054,+!p2@ZNF486!0.83!5.70!ZNF486;;chr12:66357214..66357233,+!p13@HMGA2!0.83!5.70!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.82!7.07!HOXC4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.82!5.59!POU3F3;;chr6:21593973..21593988,+!p1@SOX4!0.81!212.58!SOX4;;chr17:46675558..46675577,-!p2@HOXB6!0.81!5.38!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!0.80!5.28!HOXB8;;chr5:2751762..2751784,-!p1@IRX2!0.80!5.28!IRX2;;chr10:119302232..119302265,+!p1@EMX2!0.80!5.28!EMX2;;chr10:119303078..119303169,+!p2@EMX2!0.79!5.17!EMX2;;chr9:20621927..20621996,-!p3@MLLT3!0.78!8.76!MLLT3;;chr5:124082470..124082483,-!p8@ZNF608!0.78!4.96!ZNF608;;chr3:170076314..170076334,+!p2@SKIL!0.77!6.65!SKIL;;chr2:176969179..176969226,+!p2@HOXD11!0.77!4.86!HOXD11;;chr1:209979411..209979433,-!p2@IRF6!0.77!4.86!IRF6;;chr7:64838786..64838809,+!p2@ZNF92!0.76!29.77!ZNF92;;chr17:46703942..46703964,-!p4@HOXB9!0.76!4.75!HOXB9;;chr2:176969228..176969260,+!p1@HOXD11!0.76!4.75!HOXD11;;chr1:151032860..151032918,+!p1@MLLT11!0.75!60.90!MLLT11;;chr12:66218152..66218174,+!p10@HMGA2!0.75!5.07!HMGA2;;chr7:27153428..27153440,-!p3@HOXA3!0.74!4.43!HOXA3;;chr2:5832493..5832507,+!p2@SOX11!0.74!4.43!SOX11;;chr17:46622175..46622186,-!p12@HOXB2!0.74!4.43!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.56!HOXB2;;chr7:27219833..27219845,-!p7@HOXA10!0.73!4.33!HOXA10;;chr9:20622478..20622525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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor3.CNhs12732.11678-122H4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11678-122H4
 |is_a=EFO:0002091;;FF:0000151
 |is_obsolete=
 |library_id=CNhs12732
-|library_id_phase_based=1:CNhs12732
+|library_id_phase_based=2:CNhs12732
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11678
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11678
 |name=Renal Epithelial Cells, donor3
 |namespace=FANTOM5
@@ Line 50: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12732,LSID960,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 89: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11678-122H4;search_select_hide=table117:FF:11678-122H4
 }}

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FF:11678-122H4: Difference between revisions

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Latest revision as of 18:14, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0