FF:11694-123A2: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005453 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005453 | ||
|accession_numbers=CAGE;DRX008109;DRR008981;DRZ000406;DRZ001791;DRZ011756;DRZ013141 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037064;DRR041430;DRZ007072 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536 | |||
| | |||
| | |||
|ancestors_in_anatomy_facet=UBERON: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000009 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!2.15!369.27!OSR1;;chr5:153857778..153857794,-!p1@HAND1!2.11!129.25!HAND1;;chr10:8096631..8096660,+!p1@GATA3!1.76!67.79!GATA3;;chr10:8096772..8096787,+!p2@GATA3!1.75!64.36!GATA3;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.12!GRHL2;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.39!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!67.52!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.63!41.68!ZBED2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.88!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!179.10!SNAI2;;chr8:102504690..102504704,+!p3@GRHL2!1.48!29.54!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.48!29.01!HAND2;;chr5:2751762..2751784,-!p1@IRX2!1.46!27.70!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.44!26.64!GRHL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.42!31.65!TFAP2C;;chr19:46801639..46801699,+!p1@HIF3A!1.42!25.06!HIF3A;;chr4:188916918..188916942,+!p1@ZFP42!1.40!24.27!ZFP42;;chr17:7493405..7493419,-!p1@SOX15!1.38!23.21!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.37!445.77!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!1.37!60.93!EPAS1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.46!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.85!HEY1;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!81.24!CREB3L1;;chr19:46800289..46800327,+!p2@HIF3A!1.21!15.03!HIF3A;;chr5:3595934..3595957,+!p2@IRX1!1.15!13.19!IRX1;;chr5:3595977..3595999,+!p1@IRX1!1.15!13.19!IRX1;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.19!SOX11;;chr5:72744594..72744609,-!p1@FOXD1!1.11!54.86!FOXD1;;chr5:153857800..153857812,-!p2@HAND1!1.10!11.61!HAND1;;chr1:6479968..6479986,-!p1@HES2!1.09!11.34!HES2;;chr11:46299539..46299620,+!p2@CREB3L1!1.07!18.20!CREB3L1;;chr5:3595961..3595975,+!p3@IRX1!1.06!10.55!IRX1;;chr2:231084820..231084836,-!p5@SP110!1.03!11.34!SP110;;chr6:10412576..10412599,-!p5@TFAP2A!1.03!9.76!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.02!9.50!IRX2;;chr16:31076332..31076388,-!p3@ZNF668!0.99!8.70!ZNF668;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.44!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.97!8.44!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.96!73.59!PPP1R13L;;chr17:7492684..7492778,-!p2@SOX15!0.96!17.41!SOX15;;chr9:110251836..110251887,-!p4@KLF4!0.96!10.81!KLF4;;chr16:86612320..86612394,+!p1@FOXL1!0.96!8.18!FOXL1;;chr2:19558327..19558334,-!p2@OSR1!0.96!8.18!OSR1;;chr16:67881588..67881612,-!p2@CENPT!0.95!10.81!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.93!8.97!GATA3;;chr19:926001..926046,+!p1@ARID3A!0.92!26.11!ARID3A;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.44!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.12!KDM5D;;chr4:299227..299272,-!p1@ZNF732!0.90!6.86!ZNF732;;chr14:75988771..75988826,+!p1@BATF!0.88!8.97!BATF;;chr20:39317868..39317884,-!p1@MAFB!0.87!81.50!MAFB;;chr20:18038521..18038571,-!p1@OVOL2!0.87!6.33!OVOL2;;chr19:17356189..17356221,-!p2@NR2F6!0.85!10.29!NR2F6;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.07!HOXC4;;chr3:111314230..111314241,-!p2@ZBED2!0.85!6.07!ZBED2;;chr12:66218836..66218888,+!p1@HMGA2!0.84!59.08!HMGA2;;chr19:926055..926068,+!p2@ARID3A!0.84!13.45!ARID3A;;chr11:113930425..113930471,+!p1@ZBTB16!0.84!8.70!ZBTB16;;chr5:153857819..153857824,-!p3@HAND1!0.83!5.80!HAND1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.80!TFAP2A;;chr16:86600426..86600441,+!p1@FOXC2!0.82!14.77!FOXC2;;chr6:29648890..29648944,-!p1@ZFP57!0.82!5.54!ZFP57;;chr1:209979411..209979433,-!p2@IRF6!0.82!5.54!IRF6;;chr8:80680024..80680046,-!p2@HEY1!0.81!6.33!HEY1;;chr15:96869255..96869291,+!p6@NR2F2!0.79!9.76!NR2F2;;chr16:73093174..73093209,-!p3@ZFHX3!0.79!7.12!ZFHX3;;chr2:16080659..16080685,+!p1@MYCN!0.78!5.01!MYCN;;chr9:110250697..110250738,-!p2@KLF4!0.77!5.80!KLF4;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.42!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.75!71.48!PCBP4;;chr17:38465413..38465438,+!p5@RARA!0.75!7.65!RARA;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.91!MSX2;;chr7:27153454..27153469,-!p2@HOXA3!0.74!4.48!HOXA3;;chr1:209979449..209979460,-!p3@IRF6!0.74!4.48!IRF6;;chr2:46524878..46524891,+!p3@EPAS1!0.73!8.18!EPAS1;;chr15:96869292..96869320,+!p15@NR2F2!0.72!6.33!NR2F2;;chr1:38512457..38512474,-!p1@POU3F1!0.72!4.75!POU3F1;;chr9:110252035..110252057,-!p1@KLF4!0.71!74.91!KLF4;;chr2:60780607..60780624,-!p2@BCL11A!0.69!13.19!BCL11A;;chr3:52001396..52001425,-!p4@PCBP4!0.69!7.39!PCBP4;;chr3:52001426..52001447,-!p3@PCBP4!0.68!11.87!PCBP4;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.54!ZNF503;;chr6:85473156..85473210,-!p2@TBX18!0.68!4.75!TBX18;;chrX:56258844..56258882,+!p1@KLF8!0.67!5.28!KLF8;;chr10:77161504..77161530,-!p1@ZNF503!0.66!54.86!ZNF503;;chr11:113930291..113930339,+!p2@ZBTB16!0.66!6.33!ZBTB16;;chr5:72744445..72744466,-!p2@FOXD1!0.66!6.33!FOXD1;;chr16:73082004..73082033,-!p5@ZFHX3!0.66!6.07!ZFHX3;;chr15:96869511..96869525,+!p16@NR2F2!0.65!3.96!NR2F2;;chr8:102504932..102504952,+!p4@GRHL2!0.65!3.43!GRHL2;;chr2:46524537..46524553,+!p1@EPAS1!0.63!388.00!EPAS1;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.16!MLLT11;;chr20:2673383..2673441,+!p1@EBF4!0.63!5.54!EBF4;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.22!HOXC4;;chr5:72743793..72743855,-!p4@FOXD1!0.63!3.96!FOXD1;;chr13:73633131..73633149,+!p1@KLF5!0.62!40.62!KLF5;;chr6:19837592..19837621,+!p1@ID4!0.62!22.95!ID4;;chr10:77161533..77161546,-!p2@ZNF503!0.62!14.77!ZNF503;;chr12:54422217..54422239,+!p3@HOXC6!0.62!3.17!HOXC6;;chr6:10415263..10415274,-!p8@TFAP2A!0.62!3.17!TFAP2A;;chr1:164528410..164528428,+!p1@PBX1!0.60!26.64!PBX1;;chr3:71630980..71631110,-!p3@FOXP1!0.60!12.13!FOXP1;;chr3:5021268..5021282,+!p4@BHLHE40!0.60!6.86!BHLHE40;;chr16:29817841..29817865,+!p1@MAZ!0.59!76.23!MAZ;;chr1:59249732..59249749,-!p2@JUN!0.59!42.47!JUN;;chr17:45928443..45928473,-!p2@SP6!0.59!2.90!SP6;;chrY:2803415..2803468,+!p1@ZFY!0.59!2.90!ZFY;;chr6:35464817..35464894,-!p1@TEAD3!0.58!52.23!TEAD3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.57!361.10!ZFP36L2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.23!KLF6;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!239.76!TAX1BP3;;chr16:29817789..29817838,+!p2@MAZ!0.57!45.10!MAZ;;chr17:61920280..61920343,-!p2@SMARCD2!0.57!32.44!SMARCD2;;chr17:41622834..41622883,-!p6@ETV4!0.57!3.43!ETV4;;chrX:106960285..106960299,-!p1@TSC22D3!0.56!89.42!TSC22D3;;chr17:70117153..70117174,+!p1@SOX9!0.56!33.50!SOX9;;chr12:53625966..53626012,-!p2@RARG!0.56!8.18!RARG;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.59!ZNF503;;chr11:113930401..113930422,+!p3@ZBTB16!0.56!2.64!ZBTB16;;chr20:18038486..18038520,-!p2@OVOL2!0.56!2.64!OVOL2;;chr4:57547454..57547469,-!p1@HOPX!0.56!2.64!HOPX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.55!327.86!ZFP36L1;;chr12:124873357..124873401,-!p1@NCOR2!0.55!37.45!NCOR2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.18!HOXB2;;chr7:27135591..27135658,-!p1@HOXA1!0.55!5.54!HOXA1;;chr17:41622925..41622976,-!p3@ETV4!0.55!4.22!ETV4;;chr3:42947600..42947680,+!p1@ZNF662!0.55!3.96!ZNF662;;chr2:60778035..60778060,-!p4@BCL11A!0.55!3.17!BCL11A;;chr19:19516464..19516492,+!p4@GATAD2A!0.54!15.30!GATAD2A;;chr8:102217679..102217719,-!p2@ZNF706!0.54!10.29!ZNF706;;chrX:106959661..106959763,-!p4@TSC22D3!0.54!8.70!TSC22D3;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.22!ETV4;;chr6:126240356..126240379,+!p7@NCOA7!0.54!3.17!NCOA7;;chr3:12330560..12330579,+!p1@PPARG!0.53!2.90!PPARG;;chr3:71631382..71631413,-!p20@FOXP1!0.53!2.90!FOXP1;;chr22:24093154..24093183,-!p2@ZNF70!0.53!2.37!ZNF70;;chr2:5832493..5832507,+!p2@SOX11!0.53!2.37!SOX11;;chr16:67881647..67881663,-!p3@CENPT!0.53!2.37!CENPT;;chr10:8097321..8097348,+!p4@GATA3!0.53!2.37!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!0.53!2.37!PKNOX2;;chr2:60780753..60780800,-!p1@BCL11A!0.52!14.24!BCL11A;;chr12:66218598..66218645,+!p2@HMGA2!0.52!13.45!HMGA2;;chr2:25475120..25475176,-!p2@DNMT3A!0.52!3.43!DNMT3A;;chr20:42295745..42295765,+!p1@MYBL2!0.51!48.27!MYBL2;;chr11:61520075..61520136,+!p1@C11orf9!0.51!5.54!C11orf9;;chr3:5021113..5021180,+!p1@BHLHE40!0.50!203.63!BHLHE40;;chr1:59249707..59249727,-!p1@JUN!0.50!120.81!JUN;;chr3:150126759..150126784,+!p2@TSC22D2!0.50!12.66!TSC22D2;;chr17:46622070..46622109,-!p1@HOXB2!0.50!5.80!HOXB2;;chr19:4066890..4066903,-!p6@ZBTB7A!0.50!3.96!ZBTB7A;;chr5:72744562..72744573,-!p3@FOXD1!0.50!2.90!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.49!2.11!MSX2;;chr6:10419768..10419819,-!p6@TFAP2A!0.49!2.11!TFAP2A;;chr16:73093210..73093223,-!p13@ZFHX3!0.49!2.11!ZFHX3;;chr16:86600870..86600921,+!p2@FOXC2!0.49!2.11!FOXC2;;chr4:149366111..149366128,-!p7@NR3C2!0.49!2.11!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.49!2.11!HOPX;;chr10:8097295..8097320,+!p6@GATA3!0.49!2.11!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.48!17.67!MXD3;;chr3:12329358..12329393,+!p3@PPARG!0.48!6.07!PPARG;;chr6:31869828..31869880,-!p1@ZBTB12!0.48!4.48!ZBTB12;;chr11:46299186..46299195,+!p3@CREB3L1!0.48!2.37!CREB3L1;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.43!HMGA2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.47!2.64!L3MBTL4;;chr1:33721900..33721921,+!p2@ZNF362!0.46!5.80!ZNF362;;chr19:7580944..7581031,+!p1@ZNF358!0.45!77.55!ZNF358;;chr19:45908286..45908291,-!p3@PPP1R13L!0.45!1.85!PPP1R13L;;chr19:46806868..46806883,+!p3@HIF3A!0.45!1.85!HIF3A;;chr7:27142290..27142310,-!p1@HOXA2!0.45!1.85!HOXA2;;chr2:16080635..16080650,+!p4@MYCN!0.45!1.85!MYCN;;chr22:42229246..42229270,+!p2@SREBF2!0.44!30.86!SREBF2;;chr15:31619326..31619390,+!p2@KLF13!0.44!28.75!KLF13;;chr2:85360499..85360598,+!p1@TCF7L1!0.44!13.45!TCF7L1;;chr12:66218255..66218304,+!p3@HMGA2!0.44!6.07!HMGA2;;chr2:113993052..113993097,-!p2@PAX8!0.44!5.01!PAX8;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.44!3.43!MEIS3P1;;chr6:85474299..85474324,-!p1@TBX18!0.43!3.69!TBX18;;chr12:66218573..66218596,+!p7@HMGA2!0.43!2.90!HMGA2;;chr6:32157947..32157992,-!p1@PBX2!0.42!40.09!PBX2;;chr17:3571887..3571918,-!p2@TAX1BP3!0.42!26.38!TAX1BP3;;chr14:62162258..62162269,+!p2@HIF1A!0.42!22.42!HIF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.42!5.54!NCOA7;;chr17:41623009..41623053,-!p4@ETV4!0.42!3.17!ETV4;;chr3:32023232..32023273,+!p1@ZNF860!0.42!2.64!ZNF860;;chr16:73081974..73082002,-!p7@ZFHX3!0.42!2.11!ZFHX3;;chr7:137686791..137686821,-!p1@CREB3L2!0.41!67.26!CREB3L2;;chr2:101436564..101436647,+!p1@NPAS2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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002536;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 66: | Line 42: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor3.CNhs12125.11694-123A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11694-123A2 | |||
|is_a=EFO:0002091;;FF:0000009 | |||
|is_obsolete= | |||
|library_id=CNhs12125 | |||
|library_id_phase_based=2:CNhs12125 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11694 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGAAA.11694 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11694 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGAAA.11694 | |||
|name=Amniotic Epithelial Cells, donor3 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs12125,LSID839,release011,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10005,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.152508148299119,0.101667003219354,0.236035109731599,0.200993999315353,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0306678628626928,0,0,0,0,0,0.394821459678185,0,0,-0.0312895865595085,0,0,0,0,0,0,0,0,0,0,0,0,0.192485397612669,0.167189060820879,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.101667003219354,0,0.0044321023734824,0,0.2158338171429,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.101667003219354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937311596012195,0,0,0,0.0625326057552152,-0.0846131264395625,0,0,0,0,0.00363165198164732,0.107912477172226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.180192592399693,0.234200580540629,0,0,0.029820051058378,0,0,0 | |||
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| |||
|rna_box=123 | |||
|rna_catalog_number=SC7105 | |||
|rna_concentration=1.44 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=A2 | |||
|rna_rin=9.9 | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=123A2 | |||
|rna_weight_ug=10 | |||
|rnaseq_library_id=SRhi10005.GTGAAA | |||
|sample_age= | |||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:4229 | |||
|sample_cell_line= | |||
|sample_cell_lot=N/A | |||
|sample_cell_type=amniotic epithelial cell | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Sciencell/3H | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.72123266982379e-214!GO:0005737;cytoplasm;2.61053725596698e-190!GO:0043226;organelle;1.74040605355976e-169!GO:0043229;intracellular organelle;5.09235631040283e-169!GO:0043231;intracellular membrane-bound organelle;4.69203280496889e-161!GO:0043227;membrane-bound organelle;1.14745462050995e-160!GO:0044444;cytoplasmic part;3.25355763551822e-136!GO:0044422;organelle part;3.08992613831125e-133!GO:0044446;intracellular organelle part;6.71842241932848e-132!GO:0032991;macromolecular complex;1.01923784015067e-83!GO:0044238;primary metabolic process;1.41276165502882e-73!GO:0030529;ribonucleoprotein complex;1.47050102750858e-72!GO:0005515;protein binding;1.91986728136609e-72!GO:0044237;cellular metabolic process;3.40414413560267e-72!GO:0043170;macromolecule metabolic process;5.41153534147953e-66!GO:0005739;mitochondrion;3.31701517164035e-64!GO:0043233;organelle lumen;1.79723499739946e-56!GO:0031974;membrane-enclosed lumen;1.79723499739946e-56!GO:0031090;organelle membrane;3.09965920327917e-53!GO:0005840;ribosome;4.7038347264484e-51!GO:0005634;nucleus;2.83726389800985e-50!GO:0044428;nuclear part;3.35035872967534e-49!GO:0003723;RNA binding;7.66922049294418e-49!GO:0019538;protein metabolic process;1.63946313963377e-48!GO:0006412;translation;2.53449534453292e-46!GO:0003735;structural constituent of ribosome;1.0545305436491e-45!GO:0044429;mitochondrial part;4.42235320496233e-44!GO:0009058;biosynthetic process;3.70583902422228e-43!GO:0043234;protein complex;8.67762189914298e-43!GO:0044260;cellular macromolecule metabolic process;9.02071502295235e-43!GO:0016043;cellular component organization and biogenesis;3.24152567586861e-42!GO:0044267;cellular protein metabolic process;3.74703138871181e-42!GO:0009059;macromolecule biosynthetic process;2.80287014756487e-39!GO:0033279;ribosomal subunit;4.14914789727742e-39!GO:0033036;macromolecule localization;1.41635674690526e-38!GO:0015031;protein transport;4.29713542214463e-38!GO:0044249;cellular biosynthetic process;3.22346433582907e-37!GO:0031967;organelle envelope;4.18189942533947e-37!GO:0031975;envelope;9.93327868102289e-37!GO:0008104;protein localization;2.28420021637583e-36!GO:0045184;establishment of protein localization;6.81582046225777e-36!GO:0005829;cytosol;2.48999174203171e-35!GO:0043283;biopolymer metabolic process;1.00457485047508e-34!GO:0043228;non-membrane-bound organelle;4.33451861450334e-33!GO:0043232;intracellular non-membrane-bound organelle;4.33451861450334e-33!GO:0006396;RNA processing;3.10851541090854e-32!GO:0031981;nuclear lumen;3.67969946346741e-30!GO:0005740;mitochondrial envelope;1.51061607306068e-29!GO:0006996;organelle organization and biogenesis;2.95268382780828e-29!GO:0046907;intracellular transport;3.25216859158811e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.27376865625741e-29!GO:0065003;macromolecular complex assembly;1.0496048369018e-28!GO:0031966;mitochondrial membrane;6.7589748098069e-28!GO:0010467;gene expression;1.95041954292138e-27!GO:0019866;organelle inner membrane;5.97673339547468e-27!GO:0022607;cellular component assembly;4.00111005732628e-26!GO:0016071;mRNA metabolic process;6.43900847086567e-26!GO:0005743;mitochondrial inner membrane;2.79899541925118e-25!GO:0006886;intracellular protein transport;1.11383987124318e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.5596542014984e-24!GO:0008380;RNA splicing;7.20381828730793e-24!GO:0044445;cytosolic part;3.43136319013104e-23!GO:0006397;mRNA processing;5.68509958809984e-22!GO:0012505;endomembrane system;7.16290629491363e-22!GO:0006119;oxidative phosphorylation;1.08264285009213e-20!GO:0015934;large ribosomal subunit;1.75365392962885e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.33755567745872e-20!GO:0006259;DNA metabolic process;6.34765691266592e-20!GO:0015935;small ribosomal subunit;1.14132789921854e-19!GO:0044455;mitochondrial membrane part;1.24327669561515e-19!GO:0005783;endoplasmic reticulum;3.95991552015406e-19!GO:0005794;Golgi apparatus;6.07438811398105e-19!GO:0051649;establishment of cellular localization;2.22282938681351e-18!GO:0051641;cellular localization;4.01738493357723e-18!GO:0005654;nucleoplasm;5.09898838027952e-18!GO:0005681;spliceosome;1.26630315923216e-17!GO:0031980;mitochondrial lumen;2.93982469866356e-17!GO:0005759;mitochondrial matrix;2.93982469866356e-17!GO:0048770;pigment granule;3.2584455647551e-17!GO:0042470;melanosome;3.2584455647551e-17!GO:0005746;mitochondrial respiratory chain;5.22192498828649e-17!GO:0044432;endoplasmic reticulum part;5.74567652223802e-17!GO:0007049;cell cycle;6.98255320782946e-17!GO:0006457;protein folding;7.54400169895086e-17!GO:0016874;ligase activity;1.3822033815108e-16!GO:0043412;biopolymer modification;6.46672094886807e-16!GO:0044451;nucleoplasm part;2.10311561899571e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.30750679048129e-15!GO:0008134;transcription factor binding;3.56133318237236e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.3996751114769e-15!GO:0003954;NADH dehydrogenase activity;4.3996751114769e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.3996751114769e-15!GO:0006464;protein modification process;8.44422235165202e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.89232048357378e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.10360564141228e-14!GO:0016462;pyrophosphatase activity;4.27242481789248e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.27354283893483e-14!GO:0051186;cofactor metabolic process;4.98469527876305e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;5.39381896367408e-14!GO:0006512;ubiquitin cycle;7.73288385438584e-14!GO:0005761;mitochondrial ribosome;1.33665124278717e-13!GO:0000313;organellar ribosome;1.33665124278717e-13!GO:0022402;cell cycle process;2.14980531445712e-13!GO:0000166;nucleotide binding;2.65781014741704e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.7102227573383e-13!GO:0042773;ATP synthesis coupled electron transport;2.7102227573383e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.35006065775451e-13!GO:0017111;nucleoside-triphosphatase activity;4.97748530522332e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.1029590168051e-13!GO:0045271;respiratory chain complex I;5.1029590168051e-13!GO:0005747;mitochondrial respiratory chain complex I;5.1029590168051e-13!GO:0022618;protein-RNA complex assembly;6.83243558321686e-13!GO:0005730;nucleolus;1.41366617920115e-12!GO:0044265;cellular macromolecule catabolic process;1.4680667419012e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.66843403003532e-12!GO:0043285;biopolymer catabolic process;2.01776524425636e-12!GO:0000278;mitotic cell cycle;4.46581633639452e-12!GO:0048193;Golgi vesicle transport;6.94692820812717e-12!GO:0006605;protein targeting;7.0103996500218e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.40355141115893e-12!GO:0005789;endoplasmic reticulum membrane;9.43397318701156e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.41744873564519e-11!GO:0009057;macromolecule catabolic process;1.76167021290021e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;2.06246709913255e-11!GO:0016192;vesicle-mediated transport;2.32357528470341e-11!GO:0044248;cellular catabolic process;2.63582181206005e-11!GO:0043687;post-translational protein modification;2.80032505982292e-11!GO:0044257;cellular protein catabolic process;3.37771685687761e-11!GO:0019941;modification-dependent protein catabolic process;3.52440053364234e-11!GO:0043632;modification-dependent macromolecule catabolic process;3.52440053364234e-11!GO:0006511;ubiquitin-dependent protein catabolic process;4.03225564714077e-11!GO:0051082;unfolded protein binding;5.26632994113408e-11!GO:0003676;nucleic acid binding;5.90163749562219e-11!GO:0006732;coenzyme metabolic process;7.53188408494834e-11!GO:0030163;protein catabolic process;1.09826593427222e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.61869939232151e-10!GO:0008135;translation factor activity, nucleic acid binding;3.26943544056531e-10!GO:0032553;ribonucleotide binding;4.16159244497449e-10!GO:0032555;purine ribonucleotide binding;4.16159244497449e-10!GO:0051276;chromosome organization and biogenesis;5.20021626541575e-10!GO:0012501;programmed cell death;7.22135666298257e-10!GO:0006915;apoptosis;9.694420866522e-10!GO:0044431;Golgi apparatus part;1.03955014267505e-09!GO:0006323;DNA packaging;1.2081540597631e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.27473054652171e-09!GO:0000375;RNA splicing, via transesterification reactions;1.27473054652171e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.27473054652171e-09!GO:0005793;ER-Golgi intermediate compartment;1.5186931792419e-09!GO:0008639;small protein conjugating enzyme activity;2.47077054289709e-09!GO:0003712;transcription cofactor activity;2.66577847469667e-09!GO:0006461;protein complex assembly;2.84990675233609e-09!GO:0009055;electron carrier activity;3.38964800371524e-09!GO:0022403;cell cycle phase;3.83922658203352e-09!GO:0016070;RNA metabolic process;3.94280260805455e-09!GO:0017076;purine nucleotide binding;3.94406352276697e-09!GO:0000074;regulation of progression through cell cycle;3.97280966875366e-09!GO:0051726;regulation of cell cycle;4.11490303387483e-09!GO:0044427;chromosomal part;4.64346509066278e-09!GO:0004842;ubiquitin-protein ligase activity;5.7813328836445e-09!GO:0006974;response to DNA damage stimulus;8.86134327000331e-09!GO:0016740;transferase activity;8.86134327000331e-09!GO:0005694;chromosome;9.29111604261418e-09!GO:0005768;endosome;1.01466182373197e-08!GO:0008219;cell death;1.12974188271089e-08!GO:0016265;death;1.12974188271089e-08!GO:0019787;small conjugating protein ligase activity;1.1818469910742e-08!GO:0008565;protein transporter activity;1.19302493568485e-08!GO:0005635;nuclear envelope;1.26192659431237e-08!GO:0005524;ATP binding;1.51861703487142e-08!GO:0009259;ribonucleotide metabolic process;1.85211943533179e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.86253145399568e-08!GO:0032559;adenyl ribonucleotide binding;2.80393410941007e-08!GO:0065004;protein-DNA complex assembly;3.00727659953057e-08!GO:0006333;chromatin assembly or disassembly;3.24305786192324e-08!GO:0003743;translation initiation factor activity;4.04628362016876e-08!GO:0048475;coated membrane;4.16833880117634e-08!GO:0030117;membrane coat;4.16833880117634e-08!GO:0009150;purine ribonucleotide metabolic process;5.37790797456069e-08!GO:0006163;purine nucleotide metabolic process;5.46415796054749e-08!GO:0000785;chromatin;5.46415796054749e-08!GO:0006413;translational initiation;5.52991102061319e-08!GO:0006446;regulation of translational initiation;5.78698927449844e-08!GO:0007067;mitosis;5.88278456951209e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.99978804689659e-08!GO:0031965;nuclear membrane;7.59958875535304e-08!GO:0030120;vesicle coat;7.66578942417836e-08!GO:0030662;coated vesicle membrane;7.66578942417836e-08!GO:0000087;M phase of mitotic cell cycle;7.67114477288789e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.95260735405646e-08!GO:0030532;small nuclear ribonucleoprotein complex;9.7648001254086e-08!GO:0042254;ribosome biogenesis and assembly;1.0710044443582e-07!GO:0051188;cofactor biosynthetic process;1.19403643218215e-07!GO:0016881;acid-amino acid ligase activity;1.54931530606151e-07!GO:0006399;tRNA metabolic process;1.57639830128782e-07!GO:0009060;aerobic respiration;1.58614808483885e-07!GO:0005788;endoplasmic reticulum lumen;1.72622721070327e-07!GO:0009260;ribonucleotide biosynthetic process;1.88461498870417e-07!GO:0016604;nuclear body;2.01207983223895e-07!GO:0000139;Golgi membrane;2.28827108448892e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.31977519580524e-07!GO:0006164;purine nucleotide biosynthetic process;2.42381003796976e-07!GO:0006334;nucleosome assembly;2.47309596454996e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.56997233463309e-07!GO:0030554;adenyl nucleotide binding;3.16553126129558e-07!GO:0006913;nucleocytoplasmic transport;3.26071218052593e-07!GO:0009141;nucleoside triphosphate metabolic process;3.45428848133862e-07!GO:0031497;chromatin assembly;4.17418529440083e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.18091111337636e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.18091111337636e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.33529683159456e-07!GO:0006281;DNA repair;4.51293526055445e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.52805096550426e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.52805096550426e-07!GO:0015986;ATP synthesis coupled proton transport;4.76662616078174e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.76662616078174e-07!GO:0005773;vacuole;4.85830085627849e-07!GO:0031252;leading edge;5.11382038324728e-07!GO:0007005;mitochondrion organization and biogenesis;5.15704669176217e-07!GO:0051169;nuclear transport;5.38773010718239e-07!GO:0044453;nuclear membrane part;6.92297226691785e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.47712680840297e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.47712680840297e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.67896158363099e-07!GO:0009056;catabolic process;8.71431898821425e-07!GO:0003924;GTPase activity;8.79633104982917e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.07051450259897e-07!GO:0004812;aminoacyl-tRNA ligase activity;9.07051450259897e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.07051450259897e-07!GO:0006793;phosphorus metabolic process;9.23349854716069e-07!GO:0006796;phosphate metabolic process;9.23349854716069e-07!GO:0009719;response to endogenous stimulus;9.98490537755042e-07!GO:0048523;negative regulation of cellular process;1.19850193409758e-06!GO:0006366;transcription from RNA polymerase II promoter;1.31379092742286e-06!GO:0045333;cellular respiration;1.34270594596473e-06!GO:0017038;protein import;1.47138973869958e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.58815536608287e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.12352257850732e-06!GO:0051301;cell division;2.25880069500848e-06!GO:0043038;amino acid activation;2.71050464514213e-06!GO:0006418;tRNA aminoacylation for protein translation;2.71050464514213e-06!GO:0043039;tRNA aminoacylation;2.71050464514213e-06!GO:0019829;cation-transporting ATPase activity;2.87459250224449e-06!GO:0051246;regulation of protein metabolic process;2.98967966923482e-06!GO:0031988;membrane-bound vesicle;3.24643499328398e-06!GO:0000279;M phase;3.41985033656872e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.58981872054947e-06!GO:0009117;nucleotide metabolic process;3.80927686627982e-06!GO:0065002;intracellular protein transport across a membrane;3.84596264019759e-06!GO:0042981;regulation of apoptosis;4.08977443959124e-06!GO:0046034;ATP metabolic process;4.11936535273276e-06!GO:0042623;ATPase activity, coupled;4.61149375165259e-06!GO:0008654;phospholipid biosynthetic process;4.62283751977426e-06!GO:0043067;regulation of programmed cell death;4.95014061562358e-06!GO:0016607;nuclear speck;5.0746933150648e-06!GO:0031982;vesicle;5.13427859111578e-06!GO:0005770;late endosome;5.2960691643341e-06!GO:0044440;endosomal part;5.30565890394053e-06!GO:0010008;endosome membrane;5.30565890394053e-06!GO:0045259;proton-transporting ATP synthase complex;5.62545612720114e-06!GO:0006754;ATP biosynthetic process;5.95950025109463e-06!GO:0006753;nucleoside phosphate metabolic process;5.95950025109463e-06!GO:0006099;tricarboxylic acid cycle;6.10526105228359e-06!GO:0046356;acetyl-CoA catabolic process;6.10526105228359e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.19041488579639e-06!GO:0031410;cytoplasmic vesicle;6.28210463800318e-06!GO:0015630;microtubule cytoskeleton;6.90852697418072e-06!GO:0006260;DNA replication;7.51909232605097e-06!GO:0005798;Golgi-associated vesicle;8.97701323340183e-06!GO:0003714;transcription corepressor activity;9.12042176779353e-06!GO:0000323;lytic vacuole;9.18290168158033e-06!GO:0005764;lysosome;9.18290168158033e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.41739489881605e-06!GO:0032446;protein modification by small protein conjugation;9.44646625161351e-06!GO:0016887;ATPase activity;1.11181214393249e-05!GO:0016853;isomerase activity;1.13376135668821e-05!GO:0006084;acetyl-CoA metabolic process;1.21545525956122e-05!GO:0005762;mitochondrial large ribosomal subunit;1.31447900348899e-05!GO:0000315;organellar large ribosomal subunit;1.31447900348899e-05!GO:0016567;protein ubiquitination;1.3179121471402e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.39214253276551e-05!GO:0051329;interphase of mitotic cell cycle;1.41181366336938e-05!GO:0009108;coenzyme biosynthetic process;1.57505128531995e-05!GO:0043623;cellular protein complex assembly;1.64638382009811e-05!GO:0005905;coated pit;1.71538839291873e-05!GO:0006916;anti-apoptosis;2.09654333817496e-05!GO:0051325;interphase;2.23364080105355e-05!GO:0031324;negative regulation of cellular metabolic process;2.23684224858186e-05!GO:0048519;negative regulation of biological process;2.24350756036282e-05!GO:0016310;phosphorylation;2.29260504229909e-05!GO:0005643;nuclear pore;2.62095667436771e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.88163576279349e-05!GO:0016859;cis-trans isomerase activity;3.06514362221509e-05!GO:0006364;rRNA processing;3.18275115026826e-05!GO:0016568;chromatin modification;3.20905607481817e-05!GO:0050794;regulation of cellular process;3.70531633222401e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.0171642756522e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.02870456647383e-05!GO:0009109;coenzyme catabolic process;4.07847901810814e-05!GO:0043069;negative regulation of programmed cell death;4.7260087758098e-05!GO:0003697;single-stranded DNA binding;4.79362234521591e-05!GO:0006752;group transfer coenzyme metabolic process;5.10745136629293e-05!GO:0016072;rRNA metabolic process;5.23776731887726e-05!GO:0051187;cofactor catabolic process;5.6875840222381e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.85768896540945e-05!GO:0016564;transcription repressor activity;6.08362453120835e-05!GO:0043066;negative regulation of apoptosis;6.34090225692917e-05!GO:0019843;rRNA binding;6.54247495855064e-05!GO:0030133;transport vesicle;7.67875230970602e-05!GO:0016491;oxidoreductase activity;7.76159489584541e-05!GO:0009892;negative regulation of metabolic process;9.34019207207868e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.41649688538334e-05!GO:0016563;transcription activator activity;9.41676045044186e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.64860505873737e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.64860505873737e-05!GO:0019899;enzyme binding;0.000100398672103604!GO:0030118;clathrin coat;0.00010207107020882!GO:0005667;transcription factor complex;0.00010215067264896!GO:0007010;cytoskeleton organization and biogenesis;0.000103465532756718!GO:0016779;nucleotidyltransferase activity;0.000107632664882793!GO:0000245;spliceosome assembly;0.000121977388023477!GO:0045454;cell redox homeostasis;0.000128268795252555!GO:0016126;sterol biosynthetic process;0.000151461430193378!GO:0003713;transcription coactivator activity;0.00015461820198388!GO:0000151;ubiquitin ligase complex;0.000159324983600539!GO:0045786;negative regulation of progression through cell cycle;0.000161263517637479!GO:0000786;nucleosome;0.000189113123990325!GO:0030867;rough endoplasmic reticulum membrane;0.000196747470153525!GO:0000314;organellar small ribosomal subunit;0.000203496751637003!GO:0005763;mitochondrial small ribosomal subunit;0.000203496751637003!GO:0046930;pore complex;0.000205380865412!GO:0015980;energy derivation by oxidation of organic compounds;0.0002076157854951!GO:0008092;cytoskeletal protein binding;0.000230440723271227!GO:0042802;identical protein binding;0.000230722255851295!GO:0030029;actin filament-based process;0.000235774979792496!GO:0046474;glycerophospholipid biosynthetic process;0.000245742641668748!GO:0005525;GTP binding;0.000257081629485566!GO:0008361;regulation of cell size;0.000259450435293455!GO:0004386;helicase activity;0.000261753016868289!GO:0007243;protein kinase cascade;0.000270094832127361!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000273859364905118!GO:0001558;regulation of cell growth;0.000317676955964702!GO:0004298;threonine endopeptidase activity;0.000322563022917433!GO:0030119;AP-type membrane coat adaptor complex;0.000322563022917433!GO:0016787;hydrolase activity;0.000324900469552146!GO:0016049;cell growth;0.000325616058831801!GO:0065009;regulation of a molecular function;0.000338538063912361!GO:0003899;DNA-directed RNA polymerase activity;0.000368326203300163!GO:0008250;oligosaccharyl transferase complex;0.000381113884140783!GO:0001726;ruffle;0.000387778132792788!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000438081903670914!GO:0043566;structure-specific DNA binding;0.000447513416667331!GO:0007264;small GTPase mediated signal transduction;0.000469491886634256!GO:0005791;rough endoplasmic reticulum;0.000475156754954885!GO:0050657;nucleic acid transport;0.000502555749303589!GO:0051236;establishment of RNA localization;0.000502555749303589!GO:0050658;RNA transport;0.000502555749303589!GO:0006403;RNA localization;0.000521711991287603!GO:0008026;ATP-dependent helicase activity;0.000530484772653366!GO:0006091;generation of precursor metabolites and energy;0.00056683888552254!GO:0030131;clathrin adaptor complex;0.000568669246082608!GO:0005048;signal sequence binding;0.000575657057205648!GO:0051170;nuclear import;0.00058965710609768!GO:0008610;lipid biosynthetic process;0.000596444656350759!GO:0051789;response to protein stimulus;0.000614567845640458!GO:0006986;response to unfolded protein;0.000614567845640458!GO:0030176;integral to endoplasmic reticulum membrane;0.000625477797703681!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000646683475015282!GO:0051427;hormone receptor binding;0.000692972682705831!GO:0006606;protein import into nucleus;0.000800850511067875!GO:0030132;clathrin coat of coated pit;0.000841514285288028!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00084926708244778!GO:0005769;early endosome;0.000857745831556557!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00088674656497122!GO:0019867;outer membrane;0.00088674656497122!GO:0006650;glycerophospholipid metabolic process;0.000893406032611785!GO:0030658;transport vesicle membrane;0.000906296938764571!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000906296938764571!GO:0006613;cotranslational protein targeting to membrane;0.000911995840561309!GO:0043681;protein import into mitochondrion;0.000911995840561309!GO:0005813;centrosome;0.000986200860108395!GO:0046467;membrane lipid biosynthetic process;0.00102141965117129!GO:0030027;lamellipodium;0.00103476025140362!GO:0018196;peptidyl-asparagine modification;0.00103934618129062!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00103934618129062!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108290096868003!GO:0005885;Arp2/3 protein complex;0.00110943326376437!GO:0044262;cellular carbohydrate metabolic process;0.00112188946694798!GO:0031968;organelle outer membrane;0.00114649235711456!GO:0031902;late endosome membrane;0.00114972298554902!GO:0051252;regulation of RNA metabolic process;0.00118570188324549!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00121609472408577!GO:0046489;phosphoinositide biosynthetic process;0.00124485114095175!GO:0005741;mitochondrial outer membrane;0.00130682666281361!GO:0035257;nuclear hormone receptor binding;0.0013127974947221!GO:0043488;regulation of mRNA stability;0.00138070861419989!GO:0043487;regulation of RNA stability;0.00138070861419989!GO:0007006;mitochondrial membrane organization and biogenesis;0.00139947984706572!GO:0051920;peroxiredoxin activity;0.00140759826922258!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00147625854783555!GO:0006695;cholesterol biosynthetic process;0.00153440231383038!GO:0016481;negative regulation of transcription;0.00155426588639443!GO:0048471;perinuclear region of cytoplasm;0.00156818764804002!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00157570723869476!GO:0006414;translational elongation;0.00157592896607808!GO:0032561;guanyl ribonucleotide binding;0.00167153597197942!GO:0019001;guanyl nucleotide binding;0.00167153597197942!GO:0004576;oligosaccharyl transferase activity;0.00177419577624056!GO:0016044;membrane organization and biogenesis;0.00181510532341121!GO:0030659;cytoplasmic vesicle membrane;0.00190997141598576!GO:0048522;positive regulation of cellular process;0.00203361711169368!GO:0043021;ribonucleoprotein binding;0.00204510232681288!GO:0006839;mitochondrial transport;0.00204510232681288!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00207309900102832!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00224336390208633!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00224336390208633!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00224336390208633!GO:0040008;regulation of growth;0.00230440910517095!GO:0030125;clathrin vesicle coat;0.00230993306376738!GO:0030665;clathrin coated vesicle membrane;0.00230993306376738!GO:0005815;microtubule organizing center;0.00243421843555371!GO:0006626;protein targeting to mitochondrion;0.00245532291561771!GO:0030384;phosphoinositide metabolic process;0.0027693539997081!GO:0030660;Golgi-associated vesicle membrane;0.00290786872516382!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0030142370276309!GO:0009165;nucleotide biosynthetic process;0.00334395350617701!GO:0005774;vacuolar membrane;0.00336463299502091!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00350717086637322!GO:0005819;spindle;0.00350891056032599!GO:0050789;regulation of biological process;0.00382724248401199!GO:0006509;membrane protein ectodomain proteolysis;0.00382790787216386!GO:0033619;membrane protein proteolysis;0.00382790787216386!GO:0048487;beta-tubulin binding;0.00412213354425213!GO:0017166;vinculin binding;0.00412475971778095!GO:0007040;lysosome organization and biogenesis;0.00426800760606263!GO:0006402;mRNA catabolic process;0.00460105243370952!GO:0006891;intra-Golgi vesicle-mediated transport;0.00487335911487275!GO:0051028;mRNA transport;0.00492569063552431!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00492569063552431!GO:0015002;heme-copper terminal oxidase activity;0.00492569063552431!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00492569063552431!GO:0004129;cytochrome-c oxidase activity;0.00492569063552431!GO:0006979;response to oxidative stress;0.0050207559835741!GO:0005684;U2-dependent spliceosome;0.00506113076698528!GO:0031301;integral to organelle membrane;0.00525329108422911!GO:0005874;microtubule;0.00529781726401757!GO:0044433;cytoplasmic vesicle part;0.00532057550787702!GO:0003724;RNA helicase activity;0.00550355279571626!GO:0009967;positive regulation of signal transduction;0.00605126290901696!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00605126290901696!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00605126290901696!GO:0030663;COPI coated vesicle membrane;0.00621855581588836!GO:0030126;COPI vesicle coat;0.00621855581588836!GO:0003684;damaged DNA binding;0.00626671346321699!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00626671346321699!GO:0030880;RNA polymerase complex;0.00626671346321699!GO:0030137;COPI-coated vesicle;0.00636903808952195!GO:0043284;biopolymer biosynthetic process;0.00648248046858102!GO:0007088;regulation of mitosis;0.00658116146877212!GO:0006643;membrane lipid metabolic process;0.00683253088787861!GO:0051168;nuclear export;0.00695676868389354!GO:0050790;regulation of catalytic activity;0.00700400105084956!GO:0045936;negative regulation of phosphate metabolic process;0.00707062872879562!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00709695163903881!GO:0030031;cell projection biogenesis;0.00734060050522612!GO:0005869;dynactin complex;0.00745591246826091!GO:0016197;endosome transport;0.00758284279930947!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00865566810957068!GO:0015399;primary active transmembrane transporter activity;0.00865566810957068!GO:0044437;vacuolar part;0.00879087186664791!GO:0007033;vacuole organization and biogenesis;0.0087990249310388!GO:0031072;heat shock protein binding;0.00888637117412965!GO:0006082;organic acid metabolic process;0.00916996835098613!GO:0006779;porphyrin biosynthetic process;0.00916996835098613!GO:0033014;tetrapyrrole biosynthetic process;0.00916996835098613!GO:0007265;Ras protein signal transduction;0.00917449617246941!GO:0006778;porphyrin metabolic process;0.0102274656226693!GO:0033013;tetrapyrrole metabolic process;0.0102274656226693!GO:0019752;carboxylic acid metabolic process;0.0102590412724958!GO:0003729;mRNA binding;0.0103615665309101!GO:0006289;nucleotide-excision repair;0.0105046962432564!GO:0008033;tRNA processing;0.0107153653531904!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0107548746708783!GO:0006612;protein targeting to membrane;0.011081043018862!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0111144081772157!GO:0016311;dephosphorylation;0.0111370159667889!GO:0030145;manganese ion binding;0.0115573512388725!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0115573512388725!GO:0030134;ER to Golgi transport vesicle;0.0115829914282509!GO:0006506;GPI anchor biosynthetic process;0.0116145025329826!GO:0000082;G1/S transition of mitotic cell cycle;0.0120470846304533!GO:0016301;kinase activity;0.0121903754946329!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0131591575456856!GO:0000428;DNA-directed RNA polymerase complex;0.0131591575456856!GO:0006818;hydrogen transport;0.0132194022477004!GO:0003711;transcription elongation regulator activity;0.0132254800258139!GO:0006644;phospholipid metabolic process;0.0135508563833139!GO:0045892;negative regulation of transcription, DNA-dependent;0.0137074853414391!GO:0008139;nuclear localization sequence binding;0.0137166314223286!GO:0016125;sterol metabolic process;0.0139471486649734!GO:0031529;ruffle organization and biogenesis;0.0140793905603022!GO:0005862;muscle thin filament tropomyosin;0.0140932698819284!GO:0005765;lysosomal membrane;0.0142605729566814!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0142932879594604!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0145609916433566!GO:0035258;steroid hormone receptor binding;0.014570710648263!GO:0005637;nuclear inner membrane;0.014926532828506!GO:0022890;inorganic cation transmembrane transporter activity;0.0152612397038828!GO:0012506;vesicle membrane;0.0154402643000912!GO:0030833;regulation of actin filament polymerization;0.0154753369402191!GO:0015992;proton transport;0.0157487464789392!GO:0035035;histone acetyltransferase binding;0.0158731032950576!GO:0006458;'de novo' protein folding;0.0159026571410585!GO:0051084;'de novo' posttranslational protein folding;0.0159026571410585!GO:0016363;nuclear matrix;0.0164456551492241!GO:0015631;tubulin binding;0.016838522909763!GO:0045792;negative regulation of cell size;0.0170411412673724!GO:0006740;NADPH regeneration;0.0174367043980842!GO:0006098;pentose-phosphate shunt;0.0174367043980842!GO:0030127;COPII vesicle coat;0.0174367043980842!GO:0012507;ER to Golgi transport vesicle membrane;0.0174367043980842!GO:0042326;negative regulation of phosphorylation;0.0174596982539252!GO:0008186;RNA-dependent ATPase activity;0.0176475235918567!GO:0006595;polyamine metabolic process;0.0178528554249911!GO:0046483;heterocycle metabolic process;0.017992931779055!GO:0006505;GPI anchor metabolic process;0.0184938634098538!GO:0030308;negative regulation of cell growth;0.0186295258614455!GO:0040029;regulation of gene expression, epigenetic;0.0187754373980144!GO:0043154;negative regulation of caspase activity;0.0189094996304676!GO:0051128;regulation of cellular component organization and biogenesis;0.0193467785314778!GO:0005657;replication fork;0.0193467785314778!GO:0008022;protein C-terminus binding;0.019466780460072!GO:0000059;protein import into nucleus, docking;0.020128865297478!GO:0008637;apoptotic mitochondrial changes;0.0201881132757825!GO:0006783;heme biosynthetic process;0.0206376048323807!GO:0051287;NAD binding;0.0206480362508073!GO:0016272;prefoldin complex;0.0209846681712453!GO:0005856;cytoskeleton;0.0214968049262552!GO:0008286;insulin receptor signaling pathway;0.0215976620526944!GO:0000075;cell cycle checkpoint;0.021713193843119!GO:0006401;RNA catabolic process;0.022743234473984!GO:0045334;clathrin-coated endocytic vesicle;0.0228727266135294!GO:0051087;chaperone binding;0.0230494570862272!GO:0000209;protein polyubiquitination;0.0230494570862272!GO:0042168;heme metabolic process;0.0231251949076433!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0232414683854757!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0233834711143249!GO:0004177;aminopeptidase activity;0.0242083971371322!GO:0045941;positive regulation of transcription;0.0248151269793238!GO:0051101;regulation of DNA binding;0.0252039671952991!GO:0051098;regulation of binding;0.0257090030153761!GO:0004674;protein serine/threonine kinase activity;0.0265137679153357!GO:0045926;negative regulation of growth;0.0267284313024125!GO:0045893;positive regulation of transcription, DNA-dependent;0.0269637443433742!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0272171819545476!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0272171819545476!GO:0010257;NADH dehydrogenase complex assembly;0.0272171819545476!GO:0033108;mitochondrial respiratory chain complex assembly;0.0272171819545476!GO:0006066;alcohol metabolic process;0.0275472541208289!GO:0006383;transcription from RNA polymerase III promoter;0.0275472541208289!GO:0030521;androgen receptor signaling pathway;0.0277315214717894!GO:0046426;negative regulation of JAK-STAT cascade;0.0283995782928621!GO:0006497;protein amino acid lipidation;0.0294019618423719!GO:0000086;G2/M transition of mitotic cell cycle;0.0295647979770744!GO:0000049;tRNA binding;0.0300387724784053!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0301248672608032!GO:0007051;spindle organization and biogenesis;0.0301662713913593!GO:0008629;induction of apoptosis by intracellular signals;0.0315839654213781!GO:0048500;signal recognition particle;0.0318273257700368!GO:0016741;transferase activity, transferring one-carbon groups;0.0318622390391617!GO:0009100;glycoprotein metabolic process;0.0321823357581348!GO:0007050;cell cycle arrest;0.0325212073535671!GO:0001836;release of cytochrome c from mitochondria;0.0327702014558612!GO:0016791;phosphoric monoester hydrolase activity;0.0327745705149987!GO:0042158;lipoprotein biosynthetic process;0.033168119466547!GO:0008632;apoptotic program;0.0331906780418029!GO:0006520;amino acid metabolic process;0.0341308100244024!GO:0051085;chaperone cofactor-dependent protein folding;0.0342224833729408!GO:0005586;collagen type III;0.0344010102008078!GO:0004721;phosphoprotein phosphatase activity;0.0345121256694561!GO:0030128;clathrin coat of endocytic vesicle;0.0345121256694561!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0345121256694561!GO:0030122;AP-2 adaptor complex;0.0345121256694561!GO:0008168;methyltransferase activity;0.0348427881901716!GO:0048518;positive regulation of biological process;0.0348427881901716!GO:0031272;regulation of pseudopodium formation;0.0348427881901716!GO:0031269;pseudopodium formation;0.0348427881901716!GO:0031344;regulation of cell projection organization and biogenesis;0.0348427881901716!GO:0031268;pseudopodium organization and biogenesis;0.0348427881901716!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0348427881901716!GO:0031274;positive regulation of pseudopodium formation;0.0348427881901716!GO:0050811;GABA receptor binding;0.0348440763587812!GO:0016407;acetyltransferase activity;0.0350418489362923!GO:0005925;focal adhesion;0.0350794079449587!GO:0030140;trans-Golgi network transport vesicle;0.0350794079449587!GO:0003756;protein disulfide isomerase activity;0.0351782188247464!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0351782188247464!GO:0009112;nucleobase metabolic process;0.0353095840524022!GO:0006417;regulation of translation;0.0354245994041399!GO:0051338;regulation of transferase activity;0.0356055027887898!GO:0006518;peptide metabolic process;0.0356055027887898!GO:0045737;positive regulation of cyclin-dependent protein kinase activity;0.0361577954233257!GO:0006261;DNA-dependent DNA replication;0.0362574492484169!GO:0008094;DNA-dependent ATPase activity;0.0364415937434213!GO:0019222;regulation of metabolic process;0.0364490771764047!GO:0043492;ATPase activity, coupled to movement of substances;0.0372796386523671!GO:0033673;negative regulation of kinase activity;0.0375575769151519!GO:0006469;negative regulation of protein kinase activity;0.0375575769151519!GO:0004004;ATP-dependent RNA helicase activity;0.0377664048026206!GO:0032507;maintenance of cellular protein localization;0.0378748640146356!GO:0006220;pyrimidine nucleotide metabolic process;0.0378809877074307!GO:0008426;protein kinase C inhibitor activity;0.0383754403280965!GO:0046519;sphingoid metabolic process;0.0389688903279499!GO:0006611;protein export from nucleus;0.039810327052495!GO:0019904;protein domain specific binding;0.0400746752465907!GO:0016860;intramolecular oxidoreductase activity;0.0408192387458569!GO:0051348;negative regulation of transferase activity;0.0408988866980289!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0409024656016198!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.041192041385183!GO:0006284;base-excision repair;0.0414001097146383!GO:0044452;nucleolar part;0.0414055208455588!GO:0051235;maintenance of localization;0.041729758505746!GO:0045806;negative regulation of endocytosis;0.042640051744269!GO:0030508;thiol-disulfide exchange intermediate activity;0.0432401746766607!GO:0032508;DNA duplex unwinding;0.0433245587936771!GO:0032392;DNA geometric change;0.0433245587936771!GO:0046488;phosphatidylinositol metabolic process;0.0433245587936771!GO:0048468;cell development;0.0437591552002565!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0439055182010374!GO:0009116;nucleoside metabolic process;0.0441716478867774!GO:0043065;positive regulation of apoptosis;0.0442026207554028!GO:0030433;ER-associated protein catabolic process;0.0455047371319787!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0455047371319787!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.045722081500753!GO:0044438;microbody part;0.045722081500753!GO:0044439;peroxisomal part;0.045722081500753!GO:0007034;vacuolar transport;0.0460599386794119!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0474187419914504!GO:0008538;proteasome activator activity;0.0478052680131294!GO:0006470;protein amino acid dephosphorylation;0.047914618965256!GO:0048144;fibroblast proliferation;0.047914618965256!GO:0048145;regulation of fibroblast proliferation;0.047914618965256!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0484245769313643!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0484245769313643!GO:0043068;positive regulation of programmed cell death;0.0487882806598586!GO:0003746;translation elongation factor activity;0.0490373938973429!GO:0050178;phenylpyruvate tautomerase activity;0.0493036456254549!GO:0004860;protein kinase inhibitor activity;0.0493823453137912 | |||
|sample_id=11694 | |||
|sample_note= | |||
|sample_sex= | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=amnion | |||
|top_motifs=XCPE1{core}:1.53674754509;ZNF148:1.52209059906;GLI1..3:1.51983168826;HOX{A5,B5}:1.48791360227;TBX4,5:1.40573919308;TFAP2{A,C}:1.36466803148;PPARG:1.28786191579;ZNF384:1.18700600414;SNAI1..3:1.16856693471;TEAD1:1.16557186504;HAND1,2:1.15448351;TP53:1.1316013646;GCM1,2:1.12250261649;RXRA_VDR{dimer}:1.06058676707;NKX2-3_NKX2-5:1.0034362069;ZIC1..3:0.998438497153;ZEB1:0.961685713455;ESR1:0.957588297953;ZNF238:0.925954674568;TFCP2:0.925828218554;PAX5:0.851574327757;MAZ:0.814529889232;RORA:0.787188976705;ZNF423:0.743003101218;ONECUT1,2:0.721788499931;EBF1:0.701473310778;GTF2A1,2:0.666635767025;SP1:0.608880259542;RXR{A,B,G}:0.605552690968;EN1,2:0.593833450697;NR3C1:0.593709407667;UFEwm:0.549230857341;HIC1:0.544437571352;TFAP4:0.527575063696;NKX2-1,4:0.520752052723;POU2F1..3:0.511877881684;KLF4:0.492740341906;PAX1,9:0.450436390731;FOXM1:0.408946932193;TEF:0.406642930457;AIRE:0.392252949831;NR6A1:0.385615347069;HMX1:0.363527533386;TLX1..3_NFIC{dimer}:0.335919203689;TFAP2B:0.324368788639;CDC5L:0.320929022798;TOPORS:0.292452193526;LEF1_TCF7_TCF7L1,2:0.288595127876;FOS_FOS{B,L1}_JUN{B,D}:0.282314957258;NKX2-2,8:0.276818880895;AR:0.267271196223;TBP:0.265294886283;GFI1:0.262371449251;BACH2:0.252530877672;HOX{A4,D4}:0.249659532524;PAX8:0.220199126732;SPZ1:0.199450806085;GTF2I:0.196864592596;SOX17:0.195985755573;ESRRA:0.194919850092;LHX3,4:0.184858865004;NR1H4:0.182232179558;EP300:0.173834555565;MYOD1:0.163692968274;PAX4:0.156448122172;PBX1:0.155443867252;FOXL1:0.144270045797;GZF1:0.140051510076;FOSL2:0.134831605829;MTF1:0.120038802132;ZBTB6:0.116901200603;HLF:0.113088384533;DBP:0.104407668854;STAT5{A,B}:0.0878200468676;XBP1:0.0587518567664;ALX4:0.0563700767953;RREB1:0.052565976189;POU6F1:0.0398163359755;JUN:0.0306027373729;POU3F1..4:0.0271250530946;HOX{A6,A7,B6,B7}:0.0101948048975;IKZF1:-0.0195291727023;E2F1..5:-0.0328691369932;NR5A1,2:-0.0397315541223;bHLH_family:-0.0414607877052;SRF:-0.0429405422841;HNF1A:-0.0599697216976;MED-1{core}:-0.0657970741867;GATA6:-0.093709307229;HOXA9_MEIS1:-0.100279750956;NFY{A,B,C}:-0.111508604428;MTE{core}:-0.121433361237;TFDP1:-0.139156179026;TLX2:-0.145681835194;ADNP_IRX_SIX_ZHX:-0.149016191352;SOX5:-0.151067577175;ARID5B:-0.172984766627;PITX1..3:-0.175325967891;NFE2:-0.184605544475;HIF1A:-0.19878144875;EVI1:-0.199174027431;NHLH1,2:-0.211599363006;NFE2L2:-0.21984856909;SOX{8,9,10}:-0.236287061;POU1F1:-0.24717091501;HNF4A_NR2F1,2:-0.252687587502;FOXQ1:-0.256029836923;PATZ1:-0.270406401887;SOX2:-0.284422414623;GFI1B:-0.29914963702;TAL1_TCF{3,4,12}:-0.315014309544;NFKB1_REL_RELA:-0.325404806901;MYB:-0.331993390376;SMAD1..7,9:-0.339148869133;MYBL2:-0.356127366115;MZF1:-0.399006395902;LMO2:-0.400947676061;NANOG:-0.403656972144;ZNF143:-0.423862039431;ATF2:-0.425053957558;EGR1..3:-0.431045400604;MEF2{A,B,C,D}:-0.442219985187;ATF6:-0.445932260271;FOXA2:-0.455500435254;NKX3-2:-0.464268722372;NFIL3:-0.472179505181;YY1:-0.473658015279;REST:-0.483634888438;CRX:-0.485439916459;ETS1,2:-0.500393964222;PAX3,7:-0.504493607401;FOXO1,3,4:-0.509501882895;RFX1:-0.525833091159;OCT4_SOX2{dimer}:-0.541178202365;PAX2:-0.552008857014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.552725509891;HES1:-0.57326997151;RUNX1..3:-0.576928796521;NANOG{mouse}:-0.581306991857;PRDM1:-0.619724380925;PRRX1,2:-0.658694830473;HSF1,2:-0.658713675096;HMGA1,2:-0.661700517696;SPIB:-0.697216570111;SPI1:-0.715836716724;STAT1,3:-0.767347346259;ALX1:-0.770417732673;CEBPA,B_DDIT3:-0.776309424636;NFATC1..3:-0.777762213459;NKX3-1:-0.797280996909;CUX2:-0.828442633748;BPTF:-0.838314724721;GATA4:-0.843601288986;ELF1,2,4:-0.849672329996;PAX6:-0.857834486857;NFE2L1:-0.882576647637;MYFfamily:-0.911995761634;ATF4:-0.915872908765;FOX{F1,F2,J1}:-0.929965779313;STAT2,4,6:-0.951333763112;IRF7:-0.969604906356;FOXP3:-0.971277081219;ZFP161:-0.976687482818;FOXP1:-0.988768634406;FOX{D1,D2}:-0.9911030218;IRF1,2:-0.9962683546;ELK1,4_GABP{A,B1}:-1.01914917802;T:-1.03069711942;BREu{core}:-1.05689508999;PDX1:-1.11381616301;MAFB:-1.11589990084;NRF1:-1.11777604671;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.11854336393;FOXN1:-1.13912382776;CREB1:-1.14727122929;POU5F1:-1.15589914486;ATF5_CREB3:-1.17973897803;FOX{I1,J2}:-1.18082304304;VSX1,2:-1.1867744281;CDX1,2,4:-1.20128068883;NFIX:-1.22205767616;SREBF1,2:-1.26316140077;FOXD3:-1.27433855325;RFX2..5_RFXANK_RFXAP:-1.36344589014;DMAP1_NCOR{1,2}_SMARC:-1.42352091116;ZBTB16:-1.53171023763;TGIF1:-1.54944332069;AHR_ARNT_ARNT2:-1.67445318792;NKX6-1,2:-1.70836102965;IKZF2:-1.82422795265;HBP1_HMGB_SSRP1_UBTF:-1.83272350626;RBPJ:-1.881991576 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11694-123A2;search_select_hide=table117:FF:11694-123A2 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | Amniotic Epithelial Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12125 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12125
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12125
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.806 |
| 10 | 10 | 0.781 |
| 100 | 100 | 0.758 |
| 101 | 101 | 0.641 |
| 102 | 102 | 0.75 |
| 103 | 103 | 0.21 |
| 104 | 104 | 0.868 |
| 105 | 105 | 0.252 |
| 106 | 106 | 0.00442 |
| 107 | 107 | 0.0102 |
| 108 | 108 | 0.119 |
| 109 | 109 | 0.0553 |
| 11 | 11 | 0.255 |
| 110 | 110 | 0.138 |
| 111 | 111 | 0.701 |
| 112 | 112 | 0.779 |
| 113 | 113 | 0.00653 |
| 114 | 114 | 0.575 |
| 115 | 115 | 0.567 |
| 116 | 116 | 0.412 |
| 117 | 117 | 0.34 |
| 118 | 118 | 0.433 |
| 119 | 119 | 0.155 |
| 12 | 12 | 0.952 |
| 120 | 120 | 0.191 |
| 121 | 121 | 0.553 |
| 122 | 122 | 0.741 |
| 123 | 123 | 0.664 |
| 124 | 124 | 0.239 |
| 125 | 125 | 0.505 |
| 126 | 126 | 0.407 |
| 127 | 127 | 0.505 |
| 128 | 128 | 0.0847 |
| 129 | 129 | 0.407 |
| 13 | 13 | 0.341 |
| 130 | 130 | 0.631 |
| 131 | 131 | 0.0168 |
| 132 | 132 | 0.177 |
| 133 | 133 | 0.298 |
| 134 | 134 | 0.21 |
| 135 | 135 | 0.496 |
| 136 | 136 | 0.554 |
| 137 | 137 | 0.113 |
| 138 | 138 | 0.616 |
| 139 | 139 | 0.871 |
| 14 | 14 | 0.792 |
| 140 | 140 | 0.282 |
| 141 | 141 | 0.674 |
| 142 | 142 | 0.154 |
| 143 | 143 | 0.828 |
| 144 | 144 | 0.558 |
| 145 | 145 | 0.441 |
| 146 | 146 | 0.113 |
| 147 | 147 | 0.156 |
| 148 | 148 | 0.161 |
| 149 | 149 | 0.0673 |
| 15 | 15 | 0.83 |
| 150 | 150 | 0.221 |
| 151 | 151 | 0.256 |
| 152 | 152 | 0.0272 |
| 153 | 153 | 0.212 |
| 154 | 154 | 0.757 |
| 155 | 155 | 0.467 |
| 156 | 156 | 0.437 |
| 157 | 157 | 0.415 |
| 158 | 158 | 0.723 |
| 159 | 159 | 0.539 |
| 16 | 16 | 0.0677 |
| 160 | 160 | 0.0635 |
| 161 | 161 | 0.307 |
| 162 | 162 | 0.202 |
| 163 | 163 | 0.93 |
| 164 | 164 | 0.708 |
| 165 | 165 | 0.998 |
| 166 | 166 | 0.644 |
| 167 | 167 | 0.273 |
| 168 | 168 | 0.524 |
| 169 | 169 | 0.0468 |
| 17 | 17 | 0.0672 |
| 18 | 18 | 0.147 |
| 19 | 19 | 0.272 |
| 2 | 2 | 0.0957 |
| 20 | 20 | 0.919 |
| 21 | 21 | 0.803 |
| 22 | 22 | 0.159 |
| 23 | 23 | 0.115 |
| 24 | 24 | 0.676 |
| 25 | 25 | 0.96 |
| 26 | 26 | 0.152 |
| 27 | 27 | 0.306 |
| 28 | 28 | 0.915 |
| 29 | 29 | 0.492 |
| 3 | 3 | 0.56 |
| 30 | 30 | 0.22 |
| 31 | 31 | 0.499 |
| 32 | 32 | 1.30338e-6 |
| 33 | 33 | 0.518 |
| 34 | 34 | 0.367 |
| 35 | 35 | 0.359 |
| 36 | 36 | 0.299 |
| 37 | 37 | 0.336 |
| 38 | 38 | 0.436 |
| 39 | 39 | 0.224 |
| 4 | 4 | 0.514 |
| 40 | 40 | 0.0368 |
| 41 | 41 | 0.996 |
| 42 | 42 | 0.83 |
| 43 | 43 | 0.196 |
| 44 | 44 | 0.217 |
| 45 | 45 | 0.138 |
| 46 | 46 | 0.334 |
| 47 | 47 | 0.669 |
| 48 | 48 | 0.201 |
| 49 | 49 | 0.194 |
| 5 | 5 | 0.928 |
| 50 | 50 | 0.404 |
| 51 | 51 | 0.215 |
| 52 | 52 | 0.224 |
| 53 | 53 | 0.821 |
| 54 | 54 | 0.226 |
| 55 | 55 | 0.132 |
| 56 | 56 | 0.32 |
| 57 | 57 | 0.459 |
| 58 | 58 | 0.7 |
| 59 | 59 | 0.0605 |
| 6 | 6 | 0.485 |
| 60 | 60 | 0.305 |
| 61 | 61 | 0.709 |
| 62 | 62 | 0.928 |
| 63 | 63 | 0.298 |
| 64 | 64 | 0.139 |
| 65 | 65 | 0.161 |
| 66 | 66 | 0.328 |
| 67 | 67 | 0.429 |
| 68 | 68 | 0.276 |
| 69 | 69 | 0.00233 |
| 7 | 7 | 0.613 |
| 70 | 70 | 0.0572 |
| 71 | 71 | 0.379 |
| 72 | 72 | 0.83 |
| 73 | 73 | 0.0339 |
| 74 | 74 | 0.0741 |
| 75 | 75 | 0.392 |
| 76 | 76 | 0.446 |
| 77 | 77 | 0.0165 |
| 78 | 78 | 0.496 |
| 79 | 79 | 0.0455 |
| 8 | 8 | 0.2 |
| 80 | 80 | 0.909 |
| 81 | 81 | 0.908 |
| 82 | 82 | 0.354 |
| 83 | 83 | 0.756 |
| 84 | 84 | 0.411 |
| 85 | 85 | 0.118 |
| 86 | 86 | 0.657 |
| 87 | 87 | 0.627 |
| 88 | 88 | 0.167 |
| 89 | 89 | 0.129 |
| 9 | 9 | 0.46 |
| 90 | 90 | 0.13 |
| 91 | 91 | 0.0987 |
| 92 | 92 | 0.456 |
| 93 | 93 | 0.5 |
| 94 | 94 | 0.398 |
| 95 | 95 | 0.144 |
| 96 | 96 | 0.918 |
| 97 | 97 | 0.341 |
| 98 | 98 | 0.591 |
| 99 | 99 | 0.00677 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12125
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002536 (amniotic epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000009 (human amniotic epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
