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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00004926
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|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00013695
|accession_numbers=CAGE;DRX008172;DRR009044;DRZ000469;DRZ001854;DRZ011819;DRZ013204
|accession_numbers_RNASeq=sRNA-Seq;DRX012362;DRR013810;DRZ003011
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|comment=
|comment=
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|creation_date=
|data_phase=2
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|def=
|
|expression_enrichment_score=
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Line 35: Line 44:
|fonse_treatment_closure=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD19%252b%2520B%2520Cells%252c%2520donor3.CNhs12354.11705-123B4.hg38.nobarcode.ctss.bed.gz
|id=FF:11705-123B4
|id=FF:11705-123B4
|is_a=EFO:0002091;;FF:0000002;;FF:0000025;;FF:0000210
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|microRNAs=
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.CTTGTA.11705
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11705
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.CTTGTA.11705
|name=CD19+ B Cells, donor3
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|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
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|rna_box=123
|rna_box=123
|rna_catalog_number=3H100-500-10
|rna_catalog_number=3H100-500-10
Line 56: Line 82:
|rna_tube_id=123B4
|rna_tube_id=123B4
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10066.CTTGTA
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
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|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=
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|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.26109119075898e-220!GO:0043227;membrane-bound organelle;3.36953979646719e-201!GO:0043231;intracellular membrane-bound organelle;6.52919135000787e-201!GO:0043226;organelle;6.66304259891217e-192!GO:0043229;intracellular organelle;2.46351124705951e-191!GO:0005634;nucleus;7.29958491192495e-125!GO:0005737;cytoplasm;1.61566964569474e-115!GO:0043170;macromolecule metabolic process;1.15742326207791e-106!GO:0044422;organelle part;9.54141968161705e-104!GO:0044446;intracellular organelle part;4.76273645679689e-102!GO:0044237;cellular metabolic process;1.75194434831815e-100!GO:0044238;primary metabolic process;1.64480408450589e-98!GO:0043283;biopolymer metabolic process;2.28302732865011e-85!GO:0032991;macromolecular complex;6.34375394513837e-84!GO:0044428;nuclear part;5.64213302081154e-83!GO:0003723;RNA binding;1.1804722192862e-78!GO:0010467;gene expression;2.83790456003432e-77!GO:0044444;cytoplasmic part;3.68531898877285e-73!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.48889507720457e-70!GO:0030529;ribonucleoprotein complex;4.24742182156923e-69!GO:0043233;organelle lumen;2.54283181815689e-63!GO:0031974;membrane-enclosed lumen;2.54283181815689e-63!GO:0005515;protein binding;6.68901951966986e-59!GO:0003676;nucleic acid binding;5.07266729272433e-56!GO:0031981;nuclear lumen;1.42640296916064e-52!GO:0006396;RNA processing;7.58342584016852e-51!GO:0016070;RNA metabolic process;4.13693109943827e-48!GO:0006412;translation;3.00736527289266e-45!GO:0016071;mRNA metabolic process;1.71609136124761e-44!GO:0019538;protein metabolic process;3.21758070367467e-43!GO:0043234;protein complex;4.57687028014299e-43!GO:0033036;macromolecule localization;2.30892717318333e-42!GO:0044267;cellular protein metabolic process;1.21748897366832e-41!GO:0015031;protein transport;1.53947673785948e-41!GO:0044260;cellular macromolecule metabolic process;8.58899174592662e-41!GO:0008380;RNA splicing;3.15906512717667e-39!GO:0045184;establishment of protein localization;7.7905681582345e-39!GO:0008104;protein localization;5.5520449979496e-38!GO:0006397;mRNA processing;7.95983070166286e-37!GO:0005654;nucleoplasm;3.3270608591758e-35!GO:0005840;ribosome;3.74285180131429e-35!GO:0005739;mitochondrion;5.84467530736458e-33!GO:0009059;macromolecule biosynthetic process;4.41990185015705e-32!GO:0031090;organelle membrane;5.71314703610063e-32!GO:0006259;DNA metabolic process;7.10269108650166e-31!GO:0003735;structural constituent of ribosome;1.29886936952814e-30!GO:0016043;cellular component organization and biogenesis;4.70527960639753e-30!GO:0046907;intracellular transport;1.59111721959021e-29!GO:0033279;ribosomal subunit;3.27506243699228e-29!GO:0044451;nucleoplasm part;5.64959672418078e-29!GO:0031967;organelle envelope;8.55985162525369e-29!GO:0005681;spliceosome;9.34954488905763e-29!GO:0031975;envelope;1.67937325443214e-28!GO:0006886;intracellular protein transport;9.77654943160191e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.99827670240023e-27!GO:0005829;cytosol;5.7530844011475e-27!GO:0000166;nucleotide binding;1.17368995726758e-26!GO:0065003;macromolecular complex assembly;1.74035662396285e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.44047194145265e-26!GO:0050794;regulation of cellular process;3.44419825665645e-26!GO:0006512;ubiquitin cycle;8.87190540844407e-26!GO:0008134;transcription factor binding;5.32265417650407e-25!GO:0044445;cytosolic part;9.7893417658637e-25!GO:0006996;organelle organization and biogenesis;3.34786176387232e-24!GO:0019222;regulation of metabolic process;6.82059484092565e-24!GO:0009058;biosynthetic process;1.04832164196432e-23!GO:0022607;cellular component assembly;1.65941706663359e-23!GO:0044249;cellular biosynthetic process;1.69276434983761e-23!GO:0044429;mitochondrial part;2.66225572275033e-23!GO:0043412;biopolymer modification;5.20768775939614e-22!GO:0031323;regulation of cellular metabolic process;2.82577445317939e-21!GO:0051649;establishment of cellular localization;8.69639111547968e-21!GO:0012501;programmed cell death;1.14011174284787e-20!GO:0006915;apoptosis;1.14031744378887e-20!GO:0051641;cellular localization;1.3424832536704e-20!GO:0043687;post-translational protein modification;1.60893388965222e-19!GO:0006350;transcription;2.05828425922853e-19!GO:0019941;modification-dependent protein catabolic process;2.29050979813727e-19!GO:0043632;modification-dependent macromolecule catabolic process;2.29050979813727e-19!GO:0006511;ubiquitin-dependent protein catabolic process;2.34313219838826e-19!GO:0017111;nucleoside-triphosphatase activity;2.36379126660555e-19!GO:0008219;cell death;2.36379126660555e-19!GO:0016265;death;2.36379126660555e-19!GO:0006464;protein modification process;2.55407449270382e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;3.24272708912752e-19!GO:0016604;nuclear body;3.57183465247696e-19!GO:0016462;pyrophosphatase activity;5.89584768148823e-19!GO:0032553;ribonucleotide binding;6.04179101886971e-19!GO:0032555;purine ribonucleotide binding;6.04179101886971e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.46803365316593e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;7.09034052928814e-19!GO:0044265;cellular macromolecule catabolic process;7.09034052928814e-19!GO:0044257;cellular protein catabolic process;7.72794087863831e-19!GO:0010468;regulation of gene expression;1.26598414678711e-18!GO:0050789;regulation of biological process;1.55074754805182e-18!GO:0043285;biopolymer catabolic process;3.50558823096317e-18!GO:0022618;protein-RNA complex assembly;4.3500600931014e-18!GO:0016874;ligase activity;4.7545103729172e-18!GO:0005730;nucleolus;6.86341632381614e-18!GO:0043228;non-membrane-bound organelle;6.97584275294939e-18!GO:0043232;intracellular non-membrane-bound organelle;6.97584275294939e-18!GO:0017076;purine nucleotide binding;9.17651684472803e-18!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.38084666832442e-17!GO:0005524;ATP binding;3.21935503029862e-17!GO:0006974;response to DNA damage stimulus;3.9223146397147e-17!GO:0003712;transcription cofactor activity;4.76512283112303e-17!GO:0032559;adenyl ribonucleotide binding;1.22931755832483e-16!GO:0006605;protein targeting;2.14992357216906e-16!GO:0016607;nuclear speck;6.24463054888082e-16!GO:0006913;nucleocytoplasmic transport;1.11353096845464e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;1.16638564918651e-15!GO:0051276;chromosome organization and biogenesis;1.28778124966344e-15!GO:0015935;small ribosomal subunit;1.68890689912689e-15!GO:0006351;transcription, DNA-dependent;1.84433669972324e-15!GO:0032774;RNA biosynthetic process;1.85508696498303e-15!GO:0051169;nuclear transport;1.92675660599417e-15!GO:0045449;regulation of transcription;2.24070538456309e-15!GO:0005635;nuclear envelope;2.56223772444069e-15!GO:0030554;adenyl nucleotide binding;2.72116040339387e-15!GO:0008135;translation factor activity, nucleic acid binding;2.72667727612191e-15!GO:0005740;mitochondrial envelope;4.2256318846235e-15!GO:0019866;organelle inner membrane;4.51391624784869e-15!GO:0006323;DNA packaging;5.39551482349238e-15!GO:0031965;nuclear membrane;7.11900354952885e-15!GO:0031966;mitochondrial membrane;9.5168003579684e-15!GO:0015934;large ribosomal subunit;9.60165154152955e-15!GO:0009057;macromolecule catabolic process;1.12632016987139e-14!GO:0007049;cell cycle;1.37217451192865e-14!GO:0006366;transcription from RNA polymerase II promoter;1.64485244860899e-14!GO:0006281;DNA repair;2.40945226956462e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.44028634625154e-14!GO:0000375;RNA splicing, via transesterification reactions;2.44028634625154e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.44028634625154e-14!GO:0030163;protein catabolic process;3.05423240522339e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.90004557804932e-14!GO:0006119;oxidative phosphorylation;5.26422373936379e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.96928550632098e-14!GO:0008270;zinc ion binding;1.56541071709063e-13!GO:0012505;endomembrane system;2.09893064819834e-13!GO:0016887;ATPase activity;2.16399631061251e-13!GO:0042981;regulation of apoptosis;2.41945258540975e-13!GO:0042623;ATPase activity, coupled;2.70588853276678e-13!GO:0006355;regulation of transcription, DNA-dependent;3.20299089817565e-13!GO:0004386;helicase activity;3.39871940519918e-13!GO:0043067;regulation of programmed cell death;4.78144362266564e-13!GO:0065007;biological regulation;5.65252988784605e-13!GO:0005743;mitochondrial inner membrane;1.18146004956049e-12!GO:0044453;nuclear membrane part;1.84421304586366e-12!GO:0016568;chromatin modification;2.00290784657351e-12!GO:0006403;RNA localization;9.01628165294622e-12!GO:0006793;phosphorus metabolic process;9.21564197063589e-12!GO:0006796;phosphate metabolic process;9.21564197063589e-12!GO:0050657;nucleic acid transport;1.16748663289723e-11!GO:0051236;establishment of RNA localization;1.16748663289723e-11!GO:0050658;RNA transport;1.16748663289723e-11!GO:0008026;ATP-dependent helicase activity;1.25476327971308e-11!GO:0006413;translational initiation;1.33242774560481e-11!GO:0003743;translation initiation factor activity;1.72549972174614e-11!GO:0006446;regulation of translational initiation;1.87167064377031e-11!GO:0003713;transcription coactivator activity;1.9160145880538e-11!GO:0044248;cellular catabolic process;2.4119277662361e-11!GO:0005643;nuclear pore;2.96308607578561e-11!GO:0005694;chromosome;4.21688283718155e-11!GO:0008639;small protein conjugating enzyme activity;4.40330790091706e-11!GO:0016564;transcription repressor activity;4.40330790091706e-11!GO:0006457;protein folding;4.84560222126956e-11!GO:0004842;ubiquitin-protein ligase activity;5.36959725225145e-11!GO:0044455;mitochondrial membrane part;7.61155983788072e-11!GO:0003677;DNA binding;7.63093080637583e-11!GO:0017038;protein import;8.89386645065563e-11!GO:0009719;response to endogenous stimulus;9.02222979111699e-11!GO:0048523;negative regulation of cellular process;1.10991797668764e-10!GO:0031324;negative regulation of cellular metabolic process;1.30918478884201e-10!GO:0051726;regulation of cell cycle;1.70067318267451e-10!GO:0016563;transcription activator activity;2.47629865459056e-10!GO:0031980;mitochondrial lumen;2.72424473949543e-10!GO:0005759;mitochondrial matrix;2.72424473949543e-10!GO:0000074;regulation of progression through cell cycle;3.35303536463916e-10!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.52075390028295e-10!GO:0000502;proteasome complex (sensu Eukaryota);3.68530319418809e-10!GO:0016310;phosphorylation;3.68530319418809e-10!GO:0019787;small conjugating protein ligase activity;4.1845025092917e-10!GO:0051028;mRNA transport;6.65850070029869e-10!GO:0022402;cell cycle process;7.01261108718884e-10!GO:0046914;transition metal ion binding;7.54262646627846e-10!GO:0007243;protein kinase cascade;1.30095681091748e-09!GO:0016481;negative regulation of transcription;1.39492197709193e-09!GO:0042254;ribosome biogenesis and assembly;2.23414124057701e-09!GO:0048770;pigment granule;2.55942788261296e-09!GO:0042470;melanosome;2.55942788261296e-09!GO:0005746;mitochondrial respiratory chain;3.64464966012227e-09!GO:0006333;chromatin assembly or disassembly;3.76639888785257e-09!GO:0046930;pore complex;3.76639888785257e-09!GO:0051246;regulation of protein metabolic process;3.76639888785257e-09!GO:0048193;Golgi vesicle transport;4.58189346990953e-09!GO:0048519;negative regulation of biological process;4.60561292841679e-09!GO:0044427;chromosomal part;5.82532107102614e-09!GO:0043566;structure-specific DNA binding;6.23568542737162e-09!GO:0009892;negative regulation of metabolic process;6.68967124174827e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.67921052093034e-09!GO:0065004;protein-DNA complex assembly;9.24676862729198e-09!GO:0016192;vesicle-mediated transport;1.00604335459738e-08!GO:0051170;nuclear import;1.08683925665596e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.17156114310148e-08!GO:0005794;Golgi apparatus;1.18696826543544e-08!GO:0051082;unfolded protein binding;1.30194689871822e-08!GO:0006606;protein import into nucleus;1.60396821577465e-08!GO:0065009;regulation of a molecular function;2.16815026922925e-08!GO:0065002;intracellular protein transport across a membrane;2.7825162615622e-08!GO:0007242;intracellular signaling cascade;3.34033057773345e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.74512961348114e-08!GO:0005768;endosome;4.39420947748649e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.60570924827306e-08!GO:0032446;protein modification by small protein conjugation;5.34874383156192e-08!GO:0050136;NADH dehydrogenase (quinone) activity;5.84040278145083e-08!GO:0003954;NADH dehydrogenase activity;5.84040278145083e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.84040278145083e-08!GO:0016881;acid-amino acid ligase activity;6.58140268063837e-08!GO:0016567;protein ubiquitination;1.02913558536385e-07!GO:0043069;negative regulation of programmed cell death;1.09775654340531e-07!GO:0043066;negative regulation of apoptosis;1.30034136083766e-07!GO:0003697;single-stranded DNA binding;1.78922000154333e-07!GO:0019899;enzyme binding;1.89079051619138e-07!GO:0003714;transcription corepressor activity;2.16524774865541e-07!GO:0000785;chromatin;2.19174485056665e-07!GO:0045786;negative regulation of progression through cell cycle;2.35968621527203e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.47371586550408e-07!GO:0019829;cation-transporting ATPase activity;2.82193568835812e-07!GO:0042775;organelle ATP synthesis coupled electron transport;3.2712539417511e-07!GO:0042773;ATP synthesis coupled electron transport;3.2712539417511e-07!GO:0016787;hydrolase activity;3.39675753036564e-07!GO:0008565;protein transporter activity;3.45137924206021e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.45137924206021e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.4863080263663e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.54519027364324e-07!GO:0006399;tRNA metabolic process;3.66023820439589e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.70480034520769e-07!GO:0004674;protein serine/threonine kinase activity;3.8124490069676e-07!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.91764385094358e-07!GO:0051168;nuclear export;5.64377888391364e-07!GO:0000151;ubiquitin ligase complex;6.8185978419772e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.50464891636235e-07!GO:0030964;NADH dehydrogenase complex (quinone);8.51096254278251e-07!GO:0045271;respiratory chain complex I;8.51096254278251e-07!GO:0005747;mitochondrial respiratory chain complex I;8.51096254278251e-07!GO:0006260;DNA replication;1.11789627539457e-06!GO:0003724;RNA helicase activity;1.13897188813001e-06!GO:0009259;ribonucleotide metabolic process;1.26088455789071e-06!GO:0016740;transferase activity;1.47802988015688e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.51332304869013e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.52317030391533e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.63097045728847e-06!GO:0044432;endoplasmic reticulum part;1.68379661711654e-06!GO:0006401;RNA catabolic process;1.83794807006212e-06!GO:0016072;rRNA metabolic process;1.88110058025995e-06!GO:0006364;rRNA processing;1.93032773157522e-06!GO:0007264;small GTPase mediated signal transduction;1.95035292919639e-06!GO:0006916;anti-apoptosis;2.01818427240097e-06!GO:0006417;regulation of translation;2.0474971187601e-06!GO:0045892;negative regulation of transcription, DNA-dependent;2.05767549310011e-06!GO:0009260;ribonucleotide biosynthetic process;2.08565814627141e-06!GO:0015986;ATP synthesis coupled proton transport;2.2309383792223e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.2309383792223e-06!GO:0043065;positive regulation of apoptosis;2.44743358865911e-06!GO:0005783;endoplasmic reticulum;2.95180914342272e-06!GO:0005761;mitochondrial ribosome;3.605767048506e-06!GO:0000313;organellar ribosome;3.605767048506e-06!GO:0043068;positive regulation of programmed cell death;3.87839586959732e-06!GO:0044440;endosomal part;4.29455892443891e-06!GO:0010008;endosome membrane;4.29455892443891e-06!GO:0005770;late endosome;4.3506795773515e-06!GO:0006164;purine nucleotide biosynthetic process;4.52767900427325e-06!GO:0009152;purine ribonucleotide biosynthetic process;4.90984939870497e-06!GO:0006402;mRNA catabolic process;5.25357907219824e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.30270238792426e-06!GO:0006888;ER to Golgi vesicle-mediated transport;5.315218059498e-06!GO:0006163;purine nucleotide metabolic process;6.12576467077237e-06!GO:0000245;spliceosome assembly;6.45551819523418e-06!GO:0009150;purine ribonucleotide metabolic process;7.12475069604167e-06!GO:0006461;protein complex assembly;9.75114469219583e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.2081528901007e-05!GO:0009056;catabolic process;1.22712234294485e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.45581124826474e-05!GO:0005667;transcription factor complex;1.45743819036038e-05!GO:0006754;ATP biosynthetic process;1.46086225557345e-05!GO:0006753;nucleoside phosphate metabolic process;1.46086225557345e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.72306086384331e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.72306086384331e-05!GO:0008186;RNA-dependent ATPase activity;1.82860625678042e-05!GO:0005789;endoplasmic reticulum membrane;1.87065882388329e-05!GO:0042613;MHC class II protein complex;1.89916102203644e-05!GO:0006917;induction of apoptosis;1.97397797604063e-05!GO:0007265;Ras protein signal transduction;2.00971103185548e-05!GO:0051186;cofactor metabolic process;2.01684319458574e-05!GO:0031326;regulation of cellular biosynthetic process;2.12720903375821e-05!GO:0005773;vacuole;2.22904876654503e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.35114970717182e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.35114970717182e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.35114970717182e-05!GO:0050790;regulation of catalytic activity;2.53175469846089e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.83862913712032e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.83862913712032e-05!GO:0009060;aerobic respiration;2.91610088371623e-05!GO:0012502;induction of programmed cell death;2.95673416951645e-05!GO:0003924;GTPase activity;3.74808920543742e-05!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;3.79084474132622e-05!GO:0030695;GTPase regulator activity;3.81678761103133e-05!GO:0005793;ER-Golgi intermediate compartment;3.84705298937396e-05!GO:0016197;endosome transport;3.90327721838835e-05!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.48703089976724e-05!GO:0009199;ribonucleoside triphosphate metabolic process;4.70790357707822e-05!GO:0000278;mitotic cell cycle;5.04162769495788e-05!GO:0005839;proteasome core complex (sensu Eukaryota);5.15023398150118e-05!GO:0043038;amino acid activation;5.34659249667261e-05!GO:0006418;tRNA aminoacylation for protein translation;5.34659249667261e-05!GO:0043039;tRNA aminoacylation;5.34659249667261e-05!GO:0031497;chromatin assembly;5.46111097981275e-05!GO:0048522;positive regulation of cellular process;5.72536262100654e-05!GO:0004004;ATP-dependent RNA helicase activity;6.05239001621708e-05!GO:0045259;proton-transporting ATP synthase complex;6.31661701066778e-05!GO:0046034;ATP metabolic process;6.35629879085583e-05!GO:0016363;nuclear matrix;6.55527103692455e-05!GO:0048475;coated membrane;6.58951549460584e-05!GO:0030117;membrane coat;6.58951549460584e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.48208761509645e-05!GO:0009144;purine nucleoside triphosphate metabolic process;7.48208761509645e-05!GO:0009141;nucleoside triphosphate metabolic process;8.08838644422094e-05!GO:0006334;nucleosome assembly;8.47100481803892e-05!GO:0003690;double-stranded DNA binding;8.55462681019322e-05!GO:0009889;regulation of biosynthetic process;8.66115202318977e-05!GO:0006352;transcription initiation;9.14284504350258e-05!GO:0000323;lytic vacuole;9.31201498511071e-05!GO:0005764;lysosome;9.31201498511071e-05!GO:0008234;cysteine-type peptidase activity;0.000103189918314902!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000105550484585788!GO:0030120;vesicle coat;0.000106828672098511!GO:0030662;coated vesicle membrane;0.000106828672098511!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000117629033797809!GO:0015399;primary active transmembrane transporter activity;0.000117629033797809!GO:0051427;hormone receptor binding;0.000119740077899397!GO:0016779;nucleotidyltransferase activity;0.000125431287570584!GO:0004298;threonine endopeptidase activity;0.000126523233447177!GO:0042113;B cell activation;0.000126903678739992!GO:0006732;coenzyme metabolic process;0.000126910645031452!GO:0006613;cotranslational protein targeting to membrane;0.000131007421472482!GO:0046649;lymphocyte activation;0.000138982637004164!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000142148241257595!GO:0007005;mitochondrion organization and biogenesis;0.000143574974668759!GO:0044431;Golgi apparatus part;0.000157396386851161!GO:0005813;centrosome;0.000159973874008125!GO:0006261;DNA-dependent DNA replication;0.000166037543178974!GO:0016251;general RNA polymerase II transcription factor activity;0.000167148808449582!GO:0005525;GTP binding;0.000193495128720099!GO:0035257;nuclear hormone receptor binding;0.000193593131239456!GO:0045333;cellular respiration;0.000204944934121849!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000207555718431823!GO:0009615;response to virus;0.000217096869393631!GO:0008654;phospholipid biosynthetic process;0.000254431416095704!GO:0005083;small GTPase regulator activity;0.000267623412708015!GO:0005769;early endosome;0.000299912902916243!GO:0003729;mRNA binding;0.000324188322865711!GO:0008632;apoptotic program;0.000328390021663391!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000334879860356804!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000368462313133291!GO:0030384;phosphoinositide metabolic process;0.000391212102314382!GO:0031902;late endosome membrane;0.000408379358377618!GO:0051188;cofactor biosynthetic process;0.000477581781650743!GO:0006405;RNA export from nucleus;0.000539839097005194!GO:0019783;small conjugating protein-specific protease activity;0.000550888150139649!GO:0008047;enzyme activator activity;0.000551028429533152!GO:0005815;microtubule organizing center;0.000589827092745877!GO:0009966;regulation of signal transduction;0.000596907361893736!GO:0043623;cellular protein complex assembly;0.000621260185923021!GO:0006310;DNA recombination;0.000621566907696782!GO:0048471;perinuclear region of cytoplasm;0.000629738240537523!GO:0006099;tricarboxylic acid cycle;0.000645638988638954!GO:0046356;acetyl-CoA catabolic process;0.000645638988638954!GO:0045321;leukocyte activation;0.000667348848937489!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000689464368505441!GO:0060090;molecular adaptor activity;0.000696824556622926!GO:0046822;regulation of nucleocytoplasmic transport;0.000725329855923758!GO:0005048;signal sequence binding;0.000814546057463088!GO:0003725;double-stranded RNA binding;0.000836204469870133!GO:0030518;steroid hormone receptor signaling pathway;0.000836204469870133!GO:0004843;ubiquitin-specific protease activity;0.000844334857928205!GO:0005637;nuclear inner membrane;0.000850538091864671!GO:0043492;ATPase activity, coupled to movement of substances;0.000860171201099771!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000862405377802119!GO:0045941;positive regulation of transcription;0.000876244590871683!GO:0006650;glycerophospholipid metabolic process;0.000898913437432816!GO:0030258;lipid modification;0.000918853044734472!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000938667121223747!GO:0006611;protein export from nucleus;0.000938667121223747!GO:0002376;immune system process;0.000955020247565306!GO:0009893;positive regulation of metabolic process;0.000963202104289365!GO:0005885;Arp2/3 protein complex;0.000977177675709647!GO:0006752;group transfer coenzyme metabolic process;0.00105271929411381!GO:0043087;regulation of GTPase activity;0.00106844255249519!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00111848743719502!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00112164559751682!GO:0016301;kinase activity;0.00114555891348004!GO:0030097;hemopoiesis;0.00116203762105904!GO:0009108;coenzyme biosynthetic process;0.00125326384070491!GO:0051336;regulation of hydrolase activity;0.00131907457754774!GO:0051252;regulation of RNA metabolic process;0.00132244556855956!GO:0006950;response to stress;0.00135593141158217!GO:0009967;positive regulation of signal transduction;0.00137848556596086!GO:0004221;ubiquitin thiolesterase activity;0.0014138545241068!GO:0006084;acetyl-CoA metabolic process;0.00144588846664914!GO:0031625;ubiquitin protein ligase binding;0.00145179755868636!GO:0006414;translational elongation;0.0014846913898333!GO:0006607;NLS-bearing substrate import into nucleus;0.00160654250633912!GO:0043021;ribonucleoprotein binding;0.00170898754535257!GO:0048518;positive regulation of biological process;0.00173825557842522!GO:0045603;positive regulation of endothelial cell differentiation;0.00175239153741086!GO:0031252;leading edge;0.00180200226340754!GO:0022415;viral reproductive process;0.00186635213545447!GO:0007050;cell cycle arrest;0.00188436300237722!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00191217761121503!GO:0005774;vacuolar membrane;0.00192172947097036!GO:0032395;MHC class II receptor activity;0.00201198351998928!GO:0032561;guanyl ribonucleotide binding;0.00204177401219632!GO:0019001;guanyl nucleotide binding;0.00204177401219632!GO:0042802;identical protein binding;0.00208922928416687!GO:0031072;heat shock protein binding;0.00219566211245874!GO:0006612;protein targeting to membrane;0.00220335362538661!GO:0046966;thyroid hormone receptor binding;0.00223795075160837!GO:0051223;regulation of protein transport;0.0023371084619608!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00234347550102747!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00239879795997553!GO:0051789;response to protein stimulus;0.00245255486191638!GO:0006986;response to unfolded protein;0.00245255486191638!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00250357890984062!GO:0022403;cell cycle phase;0.00251326186564755!GO:0016741;transferase activity, transferring one-carbon groups;0.00252060423694745!GO:0045893;positive regulation of transcription, DNA-dependent;0.00284675534963175!GO:0009109;coenzyme catabolic process;0.00292115998898464!GO:0016605;PML body;0.00303886437200203!GO:0008168;methyltransferase activity;0.00307728065465793!GO:0051052;regulation of DNA metabolic process;0.00310264880771874!GO:0006818;hydrogen transport;0.00310609793548794!GO:0000118;histone deacetylase complex;0.00320387654072847!GO:0032200;telomere organization and biogenesis;0.00343378518312625!GO:0000723;telomere maintenance;0.00343378518312625!GO:0019843;rRNA binding;0.0035314949721906!GO:0031901;early endosome membrane;0.00370945308436961!GO:0003711;transcription elongation regulator activity;0.00379578888476069!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00379609766429334!GO:0006891;intra-Golgi vesicle-mediated transport;0.00382111686476861!GO:0046489;phosphoinositide biosynthetic process;0.00391258302777752!GO:0005684;U2-dependent spliceosome;0.00400702233265471!GO:0005096;GTPase activator activity;0.00402919649260485!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00403307704246585!GO:0015992;proton transport;0.00414952071093666!GO:0008139;nuclear localization sequence binding;0.00417533132971514!GO:0031325;positive regulation of cellular metabolic process;0.00417533132971514!GO:0043488;regulation of mRNA stability;0.00417533132971514!GO:0043487;regulation of RNA stability;0.00417533132971514!GO:0006468;protein amino acid phosphorylation;0.00425585679663521!GO:0005070;SH3/SH2 adaptor activity;0.00428491878134209!GO:0000087;M phase of mitotic cell cycle;0.00436525394307706!GO:0005765;lysosomal membrane;0.00436525394307706!GO:0002521;leukocyte differentiation;0.00437343169811225!GO:0019882;antigen processing and presentation;0.00442629433102278!GO:0000139;Golgi membrane;0.00443723149105147!GO:0008033;tRNA processing;0.00448967902816073!GO:0044437;vacuolar part;0.00450946571915946!GO:0016584;nucleosome positioning;0.00452684588407115!GO:0046474;glycerophospholipid biosynthetic process;0.00453569956981524!GO:0015630;microtubule cytoskeleton;0.00466297160165985!GO:0051301;cell division;0.00494878898522654!GO:0030521;androgen receptor signaling pathway;0.00497340052088615!GO:0007067;mitosis;0.00498504204971918!GO:0004428;inositol or phosphatidylinositol kinase activity;0.00511196707443905!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00518442330978663!GO:0015631;tubulin binding;0.00542723426552655!GO:0030522;intracellular receptor-mediated signaling pathway;0.00548052918238707!GO:0030433;ER-associated protein catabolic process;0.00563876119949241!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00563876119949241!GO:0042611;MHC protein complex;0.0057487317300032!GO:0005798;Golgi-associated vesicle;0.00592188522425018!GO:0005669;transcription factor TFIID complex;0.00592188522425018!GO:0003684;damaged DNA binding;0.0059394217259781!GO:0030658;transport vesicle membrane;0.00627552260513904!GO:0006302;double-strand break repair;0.00636171974618224!GO:0006383;transcription from RNA polymerase III promoter;0.00646552430403203!GO:0008017;microtubule binding;0.00672551319841778!GO:0002520;immune system development;0.00680909933426994!GO:0019210;kinase inhibitor activity;0.00682475993843528!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00682475993843528!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00682475993843528!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00682475993843528!GO:0051090;regulation of transcription factor activity;0.00689958459007419!GO:0009055;electron carrier activity;0.00690385713526235!GO:0016311;dephosphorylation;0.00692601318629808!GO:0004518;nuclease activity;0.00703916243040238!GO:0045792;negative regulation of cell size;0.00726298943931093!GO:0016791;phosphoric monoester hydrolase activity;0.0072701896266198!GO:0051187;cofactor catabolic process;0.00742803058810843!GO:0006919;caspase activation;0.00749091912859854!GO:0000119;mediator complex;0.00764132230560309!GO:0051338;regulation of transferase activity;0.00771636872014961!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00774767815457372!GO:0046467;membrane lipid biosynthetic process;0.00775951435468857!GO:0003678;DNA helicase activity;0.00779793095506229!GO:0033116;ER-Golgi intermediate compartment membrane;0.00792783865763941!GO:0004527;exonuclease activity;0.00797328001076034!GO:0003746;translation elongation factor activity;0.00797449716098851!GO:0017091;AU-rich element binding;0.00834886749277079!GO:0050779;RNA destabilization;0.00834886749277079!GO:0000289;poly(A) tail shortening;0.00834886749277079!GO:0008287;protein serine/threonine phosphatase complex;0.00839961360582239!GO:0006672;ceramide metabolic process;0.00872070161309124!GO:0043549;regulation of kinase activity;0.00872070161309124!GO:0008276;protein methyltransferase activity;0.00873671429247148!GO:0044452;nucleolar part;0.00882582539490805!GO:0046519;sphingoid metabolic process;0.0088452054685085!GO:0000209;protein polyubiquitination;0.0088503553111255!GO:0004860;protein kinase inhibitor activity;0.0089010963453024!GO:0030308;negative regulation of cell growth;0.00904147637782039!GO:0005057;receptor signaling protein activity;0.00921342982392367!GO:0007034;vacuolar transport;0.009366094350958!GO:0006338;chromatin remodeling;0.00939148111812664!GO:0032318;regulation of Ras GTPase activity;0.00940489979124614!GO:0001667;ameboidal cell migration;0.00943284025583206!GO:0032027;myosin light chain binding;0.00943284025583206!GO:0051056;regulation of small GTPase mediated signal transduction;0.00997323326637881!GO:0048487;beta-tubulin binding;0.0100307439617232!GO:0051251;positive regulation of lymphocyte activation;0.0102479378282437!GO:0048468;cell development;0.0104972435275907!GO:0051098;regulation of binding;0.0106169323477011!GO:0004722;protein serine/threonine phosphatase activity;0.010763080373399!GO:0048500;signal recognition particle;0.0108827499815598!GO:0007004;telomere maintenance via telomerase;0.0116261926088662!GO:0006289;nucleotide-excision repair;0.0116261926088662!GO:0030098;lymphocyte differentiation;0.0117928401079343!GO:0051059;NF-kappaB binding;0.0120488112581883!GO:0048534;hemopoietic or lymphoid organ development;0.0121742744722554!GO:0016790;thiolester hydrolase activity;0.0123379804340628!GO:0003702;RNA polymerase II transcription factor activity;0.0131771678566507!GO:0030036;actin cytoskeleton organization and biogenesis;0.0131771678566507!GO:0000781;chromosome, telomeric region;0.0132915501725682!GO:0033157;regulation of intracellular protein transport;0.013348403789367!GO:0042306;regulation of protein import into nucleus;0.013348403789367!GO:0046854;phosphoinositide phosphorylation;0.013348403789367!GO:0046983;protein dimerization activity;0.0134602108067501!GO:0003899;DNA-directed RNA polymerase activity;0.0136524791646701!GO:0045926;negative regulation of growth;0.0136524791646701!GO:0030660;Golgi-associated vesicle membrane;0.0140321134421861!GO:0046578;regulation of Ras protein signal transduction;0.0143945483880309!GO:0043280;positive regulation of caspase activity;0.0149550446991173!GO:0030127;COPII vesicle coat;0.0150354042286026!GO:0012507;ER to Golgi transport vesicle membrane;0.0150354042286026!GO:0000059;protein import into nucleus, docking;0.0151005300258872!GO:0043281;regulation of caspase activity;0.0153796162915863!GO:0016279;protein-lysine N-methyltransferase activity;0.0154535981687323!GO:0018024;histone-lysine N-methyltransferase activity;0.0154535981687323!GO:0016278;lysine N-methyltransferase activity;0.0154535981687323!GO:0006661;phosphatidylinositol biosynthetic process;0.015493877949024!GO:0050871;positive regulation of B cell activation;0.0157000460804108!GO:0004402;histone acetyltransferase activity;0.0161603077237341!GO:0004468;lysine N-acetyltransferase activity;0.0161603077237341!GO:0031098;stress-activated protein kinase signaling pathway;0.0163036824198662!GO:0022890;inorganic cation transmembrane transporter activity;0.0163036824198662!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0163581418232308!GO:0051235;maintenance of localization;0.0163878187286552!GO:0001775;cell activation;0.016498634793166!GO:0006595;polyamine metabolic process;0.0169010976611465!GO:0008022;protein C-terminus binding;0.0172092139557357!GO:0006984;ER-nuclear signaling pathway;0.0172591416711962!GO:0042110;T cell activation;0.0173149510521212!GO:0003682;chromatin binding;0.01753372478897!GO:0046426;negative regulation of JAK-STAT cascade;0.0175871200269984!GO:0030041;actin filament polymerization;0.0180944599374288!GO:0018193;peptidyl-amino acid modification;0.018222695854736!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0184335677188522!GO:0045047;protein targeting to ER;0.0184335677188522!GO:0043414;biopolymer methylation;0.0189035849518156!GO:0030118;clathrin coat;0.0190119072090372!GO:0006406;mRNA export from nucleus;0.0190630611930001!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0190630611930001!GO:0006376;mRNA splice site selection;0.019074145533961!GO:0000389;nuclear mRNA 3'-splice site recognition;0.019074145533961!GO:0002764;immune response-regulating signal transduction;0.0191441410203537!GO:0046834;lipid phosphorylation;0.0192876533214594!GO:0000287;magnesium ion binding;0.0193388974961016!GO:0000314;organellar small ribosomal subunit;0.0196264674322872!GO:0005763;mitochondrial small ribosomal subunit;0.0196264674322872!GO:0045859;regulation of protein kinase activity;0.0197120446365759!GO:0008312;7S RNA binding;0.0197145105280032!GO:0043681;protein import into mitochondrion;0.0197768418964337!GO:0031982;vesicle;0.0197768418964337!GO:0043022;ribosome binding;0.0197830596720651!GO:0045947;negative regulation of translational initiation;0.0198585758282345!GO:0006643;membrane lipid metabolic process;0.0199604645026192!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0203425654794554!GO:0032508;DNA duplex unwinding;0.0205325402963501!GO:0032392;DNA geometric change;0.0205325402963501!GO:0031647;regulation of protein stability;0.02057257508801!GO:0016566;specific transcriptional repressor activity;0.0206535054526367!GO:0007006;mitochondrial membrane organization and biogenesis;0.0209660666203164!GO:0030134;ER to Golgi transport vesicle;0.0211866233157642!GO:0033673;negative regulation of kinase activity;0.0212190207992829!GO:0006469;negative regulation of protein kinase activity;0.0212190207992829!GO:0016569;covalent chromatin modification;0.0220921169095675!GO:0031461;cullin-RING ubiquitin ligase complex;0.0221844772311079!GO:0019901;protein kinase binding;0.0224579534149672!GO:0045045;secretory pathway;0.0224895403595358!GO:0000786;nucleosome;0.0225345493925467!GO:0003950;NAD+ ADP-ribosyltransferase activity;0.0226035711261409!GO:0043621;protein self-association;0.0226848728737798!GO:0006914;autophagy;0.02268728163983!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0227838283721209!GO:0051329;interphase of mitotic cell cycle;0.0230011315922753!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0230011315922753!GO:0035258;steroid hormone receptor binding;0.0231070314673894!GO:0000279;M phase;0.0234222055914302!GO:0005741;mitochondrial outer membrane;0.0234955189243018!GO:0045185;maintenance of protein localization;0.0236151315663804!GO:0040029;regulation of gene expression, epigenetic;0.024801395355592!GO:0050811;GABA receptor binding;0.0248224593322554!GO:0009117;nucleotide metabolic process;0.0252431796030129!GO:0051348;negative regulation of transferase activity;0.025426452512754!GO:0007041;lysosomal transport;0.0256852808332579!GO:0019904;protein domain specific binding;0.0257082790061402!GO:0005657;replication fork;0.0261204980198212!GO:0005099;Ras GTPase activator activity;0.0261204980198212!GO:0005762;mitochondrial large ribosomal subunit;0.0261204980198212!GO:0000315;organellar large ribosomal subunit;0.0261204980198212!GO:0032259;methylation;0.0261229431661367!GO:0047485;protein N-terminus binding;0.0265112983501534!GO:0004672;protein kinase activity;0.0266599438214637!GO:0015923;mannosidase activity;0.0270108434545302!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0274046353507214!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0274046353507214!GO:0016570;histone modification;0.0279001192496326!GO:0004721;phosphoprotein phosphatase activity;0.0284085862921073!GO:0051092;activation of NF-kappaB transcription factor;0.028596899097945!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0293980085912621!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0293980085912621!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0293980085912621!GO:0042990;regulation of transcription factor import into nucleus;0.029571770066758!GO:0042991;transcription factor import into nucleus;0.029571770066758!GO:0042054;histone methyltransferase activity;0.0297982929909449!GO:0007254;JNK cascade;0.029813031865217!GO:0043433;negative regulation of transcription factor activity;0.029868911943248!GO:0006626;protein targeting to mitochondrion;0.029868911943248!GO:0005521;lamin binding;0.0299715574106394!GO:0008637;apoptotic mitochondrial changes;0.0299783031582259!GO:0046488;phosphatidylinositol metabolic process;0.0300622227039908!GO:0008629;induction of apoptosis by intracellular signals;0.0301834735882013!GO:0050851;antigen receptor-mediated signaling pathway;0.030843254948205!GO:0006354;RNA elongation;0.0311117571025825!GO:0000049;tRNA binding;0.0314331410039913!GO:0043550;regulation of lipid kinase activity;0.0314847678486401!GO:0032507;maintenance of cellular protein localization;0.0317868339690943!GO:0030968;unfolded protein response;0.0324775169744465!GO:0045730;respiratory burst;0.0326299873796866!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0326299873796866!GO:0019814;immunoglobulin complex;0.0327049176882149!GO:0019815;B cell receptor complex;0.0327049176882149!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0327072910176227!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0328111449264854!GO:0016272;prefoldin complex;0.033613135978009!GO:0051325;interphase;0.034051298495933!GO:0019900;kinase binding;0.0343640326908937!GO:0000339;RNA cap binding;0.034404128680547!GO:0002757;immune response-activating signal transduction;0.0354017573725323!GO:0030217;T cell differentiation;0.0354017573725323!GO:0006839;mitochondrial transport;0.0356970398157552!GO:0046839;phospholipid dephosphorylation;0.0357435040788285!GO:0006644;phospholipid metabolic process;0.0357435040788285!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0357636940335577!GO:0005869;dynactin complex;0.0357636940335577!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0361973258495956!GO:0043506;regulation of JNK activity;0.0362261169416474!GO:0031124;mRNA 3'-end processing;0.0364153877122232!GO:0005819;spindle;0.0369513852370134!GO:0045746;negative regulation of Notch signaling pathway;0.0377236525261772!GO:0000738;DNA catabolic process, exonucleolytic;0.0383998566158405!GO:0042824;MHC class I peptide loading complex;0.0386949453787833!GO:0001726;ruffle;0.0389181743598066!GO:0032940;secretion by cell;0.0395378292040996!GO:0042809;vitamin D receptor binding;0.0398335407617478!GO:0000303;response to superoxide;0.0399629283412028!GO:0031123;RNA 3'-end processing;0.0404138614763658!GO:0031968;organelle outer membrane;0.0408579396323861!GO:0046979;TAP2 binding;0.041157059863722!GO:0046977;TAP binding;0.041157059863722!GO:0046978;TAP1 binding;0.041157059863722!GO:0031410;cytoplasmic vesicle;0.0413614021420319!GO:0016601;Rac protein signal transduction;0.0420353787356516!GO:0019867;outer membrane;0.0422086948292785!GO:0005955;calcineurin complex;0.0436118224026374!GO:0051539;4 iron, 4 sulfur cluster binding;0.0451724127794287!GO:0006470;protein amino acid dephosphorylation;0.0457632666882433!GO:0006516;glycoprotein catabolic process;0.0462929122978691!GO:0030029;actin filament-based process;0.0465052567362386!GO:0050671;positive regulation of lymphocyte proliferation;0.04676141116984!GO:0032946;positive regulation of mononuclear cell proliferation;0.04676141116984!GO:0051651;maintenance of cellular localization;0.0488165929129425!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0496284914574118!GO:0019213;deacetylase activity;0.0498030942194665
|sample_id=11705
|sample_id=11705
|sample_note=
|sample_note=
Line 76: Line 105:
|sample_tissue=blood
|sample_tissue=blood
|top_motifs=ATF4:3.20228720448;POU2F1..3:3.03939578548;CREB1:2.73650975189;FOX{D1,D2}:2.62068526254;ATF5_CREB3:2.57955215972;NFKB1_REL_RELA:2.57722775596;PAX3,7:2.48970003099;FOX{I1,J2}:2.43574464265;RFX2..5_RFXANK_RFXAP:2.38824670112;POU5F1:2.33302012119;DMAP1_NCOR{1,2}_SMARC:2.28361258129;BPTF:2.18215094749;FOXN1:2.17326766157;AIRE:2.09015888853;HMX1:2.06671235407;FOX{F1,F2,J1}:1.97010124613;FOXP1:1.8584990661;HIF1A:1.84715026317;FOXO1,3,4:1.79955227147;PAX2:1.7473542374;ZBTB16:1.74011824833;SPI1:1.64149260451;ELF1,2,4:1.45532702444;RUNX1..3:1.45423902742;FOXA2:1.38277074676;TLX2:1.30766057081;IRF1,2:1.27460591306;PITX1..3:1.26237991766;JUN:1.25599501622;NKX6-1,2:1.25388585533;BREu{core}:1.25383829568;SPIB:1.22916109631;ETS1,2:1.15255590824;TOPORS:1.13202360553;RFX1:1.12272148301;PAX6:1.11732828508;CRX:1.04280427274;MAFB:0.911382932365;SREBF1,2:0.869027150943;ATF2:0.861687454633;CDX1,2,4:0.819980698401;RXRA_VDR{dimer}:0.638079334474;EGR1..3:0.631462766838;LMO2:0.613477668742;HBP1_HMGB_SSRP1_UBTF:0.60233007327;ATF6:0.597918717107;ZEB1:0.573584722783;FOXL1:0.573248384944;NKX2-1,4:0.570852685104;TGIF1:0.533116475202;IKZF2:0.530920966935;PBX1:0.509161634216;MYB:0.383823198984;FOXP3:0.348301312036;AHR_ARNT_ARNT2:0.347195115243;NFIL3:0.307705737677;LEF1_TCF7_TCF7L1,2:0.307672000623;SMAD1..7,9:0.274828217665;SNAI1..3:0.256994513401;STAT5{A,B}:0.255151229923;MEF2{A,B,C,D}:0.235913336579;bHLH_family:0.235451083692;NANOG{mouse}:0.186835317069;OCT4_SOX2{dimer}:0.160674255023;SOX5:0.156605973641;HOXA9_MEIS1:0.149041834933;IRF7:0.119611132654;HMGA1,2:0.0142256213815;ZFP161:0.00828784774665;RXR{A,B,G}:-0.0230665190119;ALX4:-0.0352916004687;NHLH1,2:-0.0497204858176;NANOG:-0.0588181051736;FOXQ1:-0.0642647156696;MYOD1:-0.0786447900519;CUX2:-0.103202133645;FOSL2:-0.128644890184;HES1:-0.136082866874;VSX1,2:-0.136501264763;TBX4,5:-0.136535489719;ELK1,4_GABP{A,B1}:-0.14242696035;FOS_FOS{B,L1}_JUN{B,D}:-0.158118212204;ZNF384:-0.159641563068;NKX3-1:-0.165308843219;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.168683880789;T:-0.173605333064;GATA6:-0.189729122174;PAX4:-0.194586792072;E2F1..5:-0.197526118748;MED-1{core}:-0.202048851437;POU1F1:-0.204991164424;NFATC1..3:-0.205437000932;NKX2-2,8:-0.209776837755;POU6F1:-0.228173562154;PDX1:-0.237222735322;MYFfamily:-0.241927743125;GLI1..3:-0.269000417258;EP300:-0.297443968872;CEBPA,B_DDIT3:-0.298524404018;SOX{8,9,10}:-0.300986198451;BACH2:-0.303909869222;RORA:-0.314425856579;NR5A1,2:-0.32032218559;HNF4A_NR2F1,2:-0.32919092898;DBP:-0.378562709952;RREB1:-0.39904113488;TEF:-0.42816818237;SOX2:-0.435553611832;MTE{core}:-0.474204557682;CDC5L:-0.479525829316;TAL1_TCF{3,4,12}:-0.494100036941;ESR1:-0.497257857059;PATZ1:-0.516642306837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558053250014;NFY{A,B,C}:-0.574010833808;NR6A1:-0.586590496931;EVI1:-0.587948915976;PPARG:-0.617999160421;EBF1:-0.630659223346;NRF1:-0.63603386618;HOX{A5,B5}:-0.645210181685;SRF:-0.653418419299;TFDP1:-0.663989805241;FOXD3:-0.683409817105;HNF1A:-0.706530567955;NFIX:-0.715121889594;ALX1:-0.732075916468;PRRX1,2:-0.737234548479;HOX{A6,A7,B6,B7}:-0.737900053173;HLF:-0.765941203886;GATA4:-0.768265250648;NFE2:-0.779521725547;YY1:-0.78475073771;TFCP2:-0.798303076957;TFAP4:-0.818548520212;TFAP2{A,C}:-0.825879469039;TFAP2B:-0.827077795206;HAND1,2:-0.859886270999;AR:-0.860980999664;REST:-0.861795374099;ONECUT1,2:-0.861802839388;MZF1:-0.886451399099;STAT1,3:-0.916696271322;HSF1,2:-0.920068151681;ZNF143:-0.920167472152;MTF1:-0.954617307161;PRDM1:-0.982646788014;SOX17:-0.990688557205;XBP1:-0.996341286272;UFEwm:-1.03132261256;SP1:-1.03524771521;MAZ:-1.05839044329;NFE2L1:-1.0959037406;ZNF423:-1.09681324168;XCPE1{core}:-1.10470826067;HIC1:-1.10614932971;TBP:-1.11285219731;ZNF148:-1.13191865324;LHX3,4:-1.16832553553;SPZ1:-1.18229846389;STAT2,4,6:-1.18992313123;EN1,2:-1.20066852368;POU3F1..4:-1.20733721358;NFE2L2:-1.29918178861;ZNF238:-1.30175670135;PAX5:-1.31920344236;ADNP_IRX_SIX_ZHX:-1.33215033138;GFI1B:-1.36317238962;ZIC1..3:-1.37485116665;GFI1:-1.39089321772;TP53:-1.44288988661;NKX3-2:-1.44808260057;NKX2-3_NKX2-5:-1.47920002916;HOX{A4,D4}:-1.49269717795;PAX8:-1.50130737151;RBPJ:-1.55111796418;ESRRA:-1.56629136231;GCM1,2:-1.57906210193;GZF1:-1.6073276255;MYBL2:-1.7172362977;GTF2A1,2:-1.72587892511;ARID5B:-1.76672619072;TEAD1:-1.78458457702;GTF2I:-1.92762655897;ZBTB6:-1.9499363608;FOXM1:-2.0717180083;IKZF1:-2.1702840783;KLF4:-2.1842415219;TLX1..3_NFIC{dimer}:-2.18470935514;NR1H4:-2.24338952862;NR3C1:-2.72478329103;PAX1,9:-2.98726944969
|top_motifs=ATF4:3.20228720448;POU2F1..3:3.03939578548;CREB1:2.73650975189;FOX{D1,D2}:2.62068526254;ATF5_CREB3:2.57955215972;NFKB1_REL_RELA:2.57722775596;PAX3,7:2.48970003099;FOX{I1,J2}:2.43574464265;RFX2..5_RFXANK_RFXAP:2.38824670112;POU5F1:2.33302012119;DMAP1_NCOR{1,2}_SMARC:2.28361258129;BPTF:2.18215094749;FOXN1:2.17326766157;AIRE:2.09015888853;HMX1:2.06671235407;FOX{F1,F2,J1}:1.97010124613;FOXP1:1.8584990661;HIF1A:1.84715026317;FOXO1,3,4:1.79955227147;PAX2:1.7473542374;ZBTB16:1.74011824833;SPI1:1.64149260451;ELF1,2,4:1.45532702444;RUNX1..3:1.45423902742;FOXA2:1.38277074676;TLX2:1.30766057081;IRF1,2:1.27460591306;PITX1..3:1.26237991766;JUN:1.25599501622;NKX6-1,2:1.25388585533;BREu{core}:1.25383829568;SPIB:1.22916109631;ETS1,2:1.15255590824;TOPORS:1.13202360553;RFX1:1.12272148301;PAX6:1.11732828508;CRX:1.04280427274;MAFB:0.911382932365;SREBF1,2:0.869027150943;ATF2:0.861687454633;CDX1,2,4:0.819980698401;RXRA_VDR{dimer}:0.638079334474;EGR1..3:0.631462766838;LMO2:0.613477668742;HBP1_HMGB_SSRP1_UBTF:0.60233007327;ATF6:0.597918717107;ZEB1:0.573584722783;FOXL1:0.573248384944;NKX2-1,4:0.570852685104;TGIF1:0.533116475202;IKZF2:0.530920966935;PBX1:0.509161634216;MYB:0.383823198984;FOXP3:0.348301312036;AHR_ARNT_ARNT2:0.347195115243;NFIL3:0.307705737677;LEF1_TCF7_TCF7L1,2:0.307672000623;SMAD1..7,9:0.274828217665;SNAI1..3:0.256994513401;STAT5{A,B}:0.255151229923;MEF2{A,B,C,D}:0.235913336579;bHLH_family:0.235451083692;NANOG{mouse}:0.186835317069;OCT4_SOX2{dimer}:0.160674255023;SOX5:0.156605973641;HOXA9_MEIS1:0.149041834933;IRF7:0.119611132654;HMGA1,2:0.0142256213815;ZFP161:0.00828784774665;RXR{A,B,G}:-0.0230665190119;ALX4:-0.0352916004687;NHLH1,2:-0.0497204858176;NANOG:-0.0588181051736;FOXQ1:-0.0642647156696;MYOD1:-0.0786447900519;CUX2:-0.103202133645;FOSL2:-0.128644890184;HES1:-0.136082866874;VSX1,2:-0.136501264763;TBX4,5:-0.136535489719;ELK1,4_GABP{A,B1}:-0.14242696035;FOS_FOS{B,L1}_JUN{B,D}:-0.158118212204;ZNF384:-0.159641563068;NKX3-1:-0.165308843219;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.168683880789;T:-0.173605333064;GATA6:-0.189729122174;PAX4:-0.194586792072;E2F1..5:-0.197526118748;MED-1{core}:-0.202048851437;POU1F1:-0.204991164424;NFATC1..3:-0.205437000932;NKX2-2,8:-0.209776837755;POU6F1:-0.228173562154;PDX1:-0.237222735322;MYFfamily:-0.241927743125;GLI1..3:-0.269000417258;EP300:-0.297443968872;CEBPA,B_DDIT3:-0.298524404018;SOX{8,9,10}:-0.300986198451;BACH2:-0.303909869222;RORA:-0.314425856579;NR5A1,2:-0.32032218559;HNF4A_NR2F1,2:-0.32919092898;DBP:-0.378562709952;RREB1:-0.39904113488;TEF:-0.42816818237;SOX2:-0.435553611832;MTE{core}:-0.474204557682;CDC5L:-0.479525829316;TAL1_TCF{3,4,12}:-0.494100036941;ESR1:-0.497257857059;PATZ1:-0.516642306837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.558053250014;NFY{A,B,C}:-0.574010833808;NR6A1:-0.586590496931;EVI1:-0.587948915976;PPARG:-0.617999160421;EBF1:-0.630659223346;NRF1:-0.63603386618;HOX{A5,B5}:-0.645210181685;SRF:-0.653418419299;TFDP1:-0.663989805241;FOXD3:-0.683409817105;HNF1A:-0.706530567955;NFIX:-0.715121889594;ALX1:-0.732075916468;PRRX1,2:-0.737234548479;HOX{A6,A7,B6,B7}:-0.737900053173;HLF:-0.765941203886;GATA4:-0.768265250648;NFE2:-0.779521725547;YY1:-0.78475073771;TFCP2:-0.798303076957;TFAP4:-0.818548520212;TFAP2{A,C}:-0.825879469039;TFAP2B:-0.827077795206;HAND1,2:-0.859886270999;AR:-0.860980999664;REST:-0.861795374099;ONECUT1,2:-0.861802839388;MZF1:-0.886451399099;STAT1,3:-0.916696271322;HSF1,2:-0.920068151681;ZNF143:-0.920167472152;MTF1:-0.954617307161;PRDM1:-0.982646788014;SOX17:-0.990688557205;XBP1:-0.996341286272;UFEwm:-1.03132261256;SP1:-1.03524771521;MAZ:-1.05839044329;NFE2L1:-1.0959037406;ZNF423:-1.09681324168;XCPE1{core}:-1.10470826067;HIC1:-1.10614932971;TBP:-1.11285219731;ZNF148:-1.13191865324;LHX3,4:-1.16832553553;SPZ1:-1.18229846389;STAT2,4,6:-1.18992313123;EN1,2:-1.20066852368;POU3F1..4:-1.20733721358;NFE2L2:-1.29918178861;ZNF238:-1.30175670135;PAX5:-1.31920344236;ADNP_IRX_SIX_ZHX:-1.33215033138;GFI1B:-1.36317238962;ZIC1..3:-1.37485116665;GFI1:-1.39089321772;TP53:-1.44288988661;NKX3-2:-1.44808260057;NKX2-3_NKX2-5:-1.47920002916;HOX{A4,D4}:-1.49269717795;PAX8:-1.50130737151;RBPJ:-1.55111796418;ESRRA:-1.56629136231;GCM1,2:-1.57906210193;GZF1:-1.6073276255;MYBL2:-1.7172362977;GTF2A1,2:-1.72587892511;ARID5B:-1.76672619072;TEAD1:-1.78458457702;GTF2I:-1.92762655897;ZBTB6:-1.9499363608;FOXM1:-2.0717180083;IKZF1:-2.1702840783;KLF4:-2.1842415219;TLX1..3_NFIC{dimer}:-2.18470935514;NR1H4:-2.24338952862;NR3C1:-2.72478329103;PAX1,9:-2.98726944969
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11705-123B4;search_select_hide=table117:FF:11705-123B4
}}
}}

Latest revision as of 18:15, 4 June 2020

Name:CD19+ B Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12354,SRhi10066.CTTGTA
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeb cell
cell lineNA
company3HBiomedical
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog number3H100-500-10
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004926
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12354 CAGE DRX008172 DRR009044
Accession ID Hg19

Library idBAMCTSS
CNhs12354 DRZ000469 DRZ001854
Accession ID Hg38

Library idBAMCTSS
CNhs12354 DRZ011819 DRZ013204
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00013695
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10066.CTTGTA sRNA-Seq DRX012362 DRR013810
Accession ID Hg19

Library idBAMCTSS
SRhi10066.CTTGTA DRZ003011


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0387
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.218
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
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C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12354

Jaspar motifP-value
MA0002.20.011
MA0003.10.428
MA0004.10.375
MA0006.10.0921
MA0007.10.399
MA0009.10.112
MA0014.10.933
MA0017.10.464
MA0018.21.6977e-11
MA0019.10.47
MA0024.10.524
MA0025.10.468
MA0027.10.93
MA0028.10.28
MA0029.10.305
MA0030.10.00363
MA0031.10.00291
MA0035.20.832
MA0038.10.0754
MA0039.20.656
MA0040.10.748
MA0041.10.192
MA0042.10.747
MA0043.11.47365e-5
MA0046.10.326
MA0047.20.339
MA0048.10.882
MA0050.16.85446e-9
MA0051.10.00256
MA0052.10.084
MA0055.10.994
MA0057.10.212
MA0058.10.309
MA0059.10.856
MA0060.10.0149
MA0061.13.32995e-20
MA0062.22.98638e-6
MA0065.20.87
MA0066.10.852
MA0067.12.9186e-4
MA0068.10.247
MA0069.10.635
MA0070.10.461
MA0071.10.685
MA0072.10.654
MA0073.10.497
MA0074.10.915
MA0076.10.0921
MA0077.10.32
MA0078.10.886
MA0079.20.713
MA0080.24.73527e-11
MA0081.12.26259e-4
MA0083.10.203
MA0084.10.482
MA0087.10.403
MA0088.10.265
MA0090.12.8539e-5
MA0091.10.479
MA0092.10.666
MA0093.10.485
MA0099.20.0158
MA0100.10.806
MA0101.13.60079e-17
MA0102.20.0555
MA0103.10.106
MA0104.20.0998
MA0105.18.95629e-13
MA0106.10.0924
MA0107.18.96653e-17
MA0108.28.24339e-4
MA0111.10.552
MA0112.20.552
MA0113.10.171
MA0114.10.4
MA0115.10.543
MA0116.10.0126
MA0117.10.0543
MA0119.10.17
MA0122.10.955
MA0124.10.986
MA0125.10.225
MA0131.10.0477
MA0135.10.0511
MA0136.13.58624e-12
MA0137.20.00657
MA0138.20.112
MA0139.10.522
MA0140.10.895
MA0141.10.153
MA0142.10.53
MA0143.10.567
MA0144.10.0169
MA0145.10.0157
MA0146.10.598
MA0147.10.118
MA0148.10.705
MA0149.10.436
MA0150.10.669
MA0152.10.0662
MA0153.10.00548
MA0154.10.0329
MA0155.10.249
MA0156.12.12243e-5
MA0157.10.0448
MA0159.10.236
MA0160.10.955
MA0162.10.253
MA0163.10.00375
MA0164.10.372
MA0258.10.786
MA0259.10.421



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12354

Novel motifP-value
10.647
100.00683
1000.73
1010.451
1020.891
1030.549
1040.741
1050.819
1060.0721
1070.189
1080.384
1090.982
110.517
1100.99
1110.163
1120.854
1130.0348
1140.673
1150.967
1160.14
1178.98836e-4
1180.291
1190.561
120.565
1200.364
1210.243
1220.752
1232.71168e-4
1240.819
1250.376
1260.335
1270.724
1280.783
1290.216
130.459
1300.074
1310.249
1320.106
1330.0698
1340.679
1350.0495
1360.372
1370.00729
1380.604
1390.371
140.523
1400.117
1410.256
1420.62
1430.612
1440.749
1450.927
1460.502
1470.153
1480.204
1490.875
150.496
1500.804
1510.85
1520.993
1530.358
1540.245
1550.0161
1560.69
1570.517
1580.0035
1590.566
160.202
1600.34
1610.978
1620.302
1630.37
1640.0374
1650.759
1660.318
1670.13
1680.778
1690.33
170.786
180.92
190.0731
20.205
200.112
210.784
220.31
230.869
240.349
250.114
260.552
270.494
280.481
290.0515
30.499
300.0758
310.695
320.0141
330.527
340.401
350.202
360.0771
370.255
380.968
390.4
40.868
400.585
410.089
420.501
430.393
440.846
450.2
460.745
470.613
480.838
490.125
50.875
500.76
510.868
520.909
530.422
540.884
550.639
560.753
570.795
580.104
590.569
60.807
600.461
610.139
620.183
630.887
640.987
650.671
660.289
670.635
680.827
690.413
70.532
700.275
710.123
720.417
730.557
740.596
750.00952
760.0149
770.0101
780.71
790.534
80.527
800.279
810.41
820.295
830.535
840.0812
850.471
860.033
870.57
880.71
890.00188
90.703
900.308
910.17
920.971
930.555
940.251
950.103
960.549
970.523
980.262
991.25909e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12354


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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