FF:11752-123G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005347 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008551;DRR009423;DRZ000848;DRZ002233;DRZ012198;DRZ013583 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000271 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.97!92.91!TCF21;;chr8:72756637..72756664,-!p3@MSC!1.38!26.09!MSC;;chr8:25902876..25902936,-!p1@EBF2!1.35!21.28!EBF2;;chr19:45971246..45971265,+!p1@FOSB!1.31!349.44!FOSB;;chr8:72756063..72756125,-!p1@MSC!1.28!36.39!MSC;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.37!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.71!GATA4;;chr17:46132044..46132080,+!p4@NFE2L1!1.22!15.56!NFE2L1;;chr3:141105705..141105770,+!p4@ZBTB38!1.20!17.85!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!1.19!21.28!MSC;;chr8:72756667..72756736,-!p2@MSC!1.18!22.20!MSC;;chr8:72755987..72756002,-!p7@MSC!1.13!12.36!MSC;;chr17:38256799..38256815,-!p3@NR1D1!1.12!22.20!NR1D1;;chr21:36260773..36260804,-!p7@RUNX1!1.08!14.87!RUNX1;;chr8:72756213..72756243,-!p5@MSC!1.08!14.19!MSC;;chr19:50432453..50432468,+!p1@ATF5!1.05!580.34!ATF5;;chr19:50435736..50435781,+!p3@ATF5!1.05!14.19!ATF5;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.49!CREB3L1;;chr8:55370487..55370503,+!p1@SOX17!1.00!8.92!SOX17;;chr1:212782094..212782109,+!p1@ATF3!0.98!238.45!ATF3;;chr1:158979872..158979898,+!p3@IFI16!0.98!27.00!IFI16;;chr22:38598086..38598105,+!p1@MAFF!0.97!91.54!MAFF;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.11!OSR1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.94!412.60!NFKBIZ;;chr7:35293685..35293718,-!p1@TBX20!0.94!7.78!TBX20;;chr17:46126136..46126152,+!p1@NFE2L1!0.93!397.95!NFE2L1;;chr1:59249688..59249703,-!p3@JUN!0.93!47.37!JUN;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.70!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.92!95.43!NR4A1;;chr1:221052994..221053008,+!p6@HLX!0.91!8.47!HLX;;chr3:157823517..157823562,-!p1@SHOX2!0.90!7.55!SHOX2;;chr9:110252035..110252057,-!p1@KLF4!0.89!113.28!KLF4;;chr20:50179368..50179392,-!p2@NFATC2!0.88!8.70!NFATC2;;chr15:83953397..83953425,-!p1@BNC1!0.88!7.55!BNC1;;chr6:126102292..126102329,+!p3@NCOA7!0.87!22.43!NCOA7;;chr8:49833948..49833973,-!p2@SNAI2!0.86!41.65!SNAI2;;chr1:221053049..221053075,+!p3@HLX!0.86!11.21!HLX;;chr1:170632137..170632172,+!p10@PRRX1!0.86!6.18!PRRX1;;chr12:10870927..10870966,-!p5@CSDA!0.86!6.18!CSDA;;chr8:72756380..72756427,-!p8@MSC!0.86!6.18!MSC;;chr17:38256822..38256851,-!p1@NR1D1!0.85!51.03!NR1D1;;chr15:42749722..42749739,-!p2@ZFP106!0.85!11.21!ZFP106;;chr1:170633348..170633399,+!p2@PRRX1!0.85!8.47!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.84!19.91!TWIST2;;chr19:33865009..33865090,+!p3@CEBPG!0.84!8.01!CEBPG;;chr2:113994491..113994515,-!p7@PAX8!0.84!5.95!PAX8;;chr12:77459306..77459365,-!p1@E2F7!0.83!76.89!E2F7;;chr7:19157043..19157088,-!p2@TWIST1!0.83!15.10!TWIST1;;chr14:29235961..29236008,+!p1@FOXG1!0.83!5.72!FOXG1;;chr14:75745523..75745537,+!p1@FOS!0.80!684.92!FOS;;chr14:29234581..29234601,+!p2@FOXG1!0.80!5.26!FOXG1;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.20!EGR1;;chr3:12329397..12329433,+!p2@PPARG!0.79!12.59!PPARG;;chr1:221052776..221052799,+!p1@HLX!0.79!9.84!HLX;;chr12:72056800..72056834,+!p1@THAP2!0.79!7.09!THAP2;;chr17:46128217..46128243,+!p11@NFE2L1!0.78!5.03!NFE2L1;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.03!KDM5D;;chr2:185463247..185463263,+!p1@ZNF804A!0.77!9.15!ZNF804A;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.02!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.47!CREB3L1;;chr8:72756194..72756208,-!p9@MSC!0.76!4.81!MSC;;chr11:65687362..65687436,+!p3@DRAP1!0.75!22.88!DRAP1;;chr19:42636586..42636607,-!p1@POU2F2!0.75!13.73!POU2F2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.18!FOS;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.58!ZFY;;chr2:145275162..145275202,-!p2@ZEB2!0.74!29.29!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.05!DRAP1;;chr19:53360870..53360873,-!p1@ZNF468!0.74!18.08!ZNF468;;chr1:170632250..170632277,+!p7@PRRX1!0.73!4.35!PRRX1;;chr18:3450293..3450304,+!p4@TGIF1!0.72!11.44!TGIF1;;chr3:5021268..5021282,+!p4@BHLHE40!0.72!9.38!BHLHE40;;chr1:158979851..158979865,+!p5@IFI16!0.71!9.84!IFI16;;chr1:170632115..170632136,+!p9@PRRX1!0.71!4.12!PRRX1;;chr14:29236269..29236285,+!p3@FOXG1!0.71!4.12!FOXG1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.70!7.09!MEIS3P1;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.22!SNAI2;;chr8:72756023..72756055,-!p6@MSC!0.69!5.03!MSC;;chr8:72756251..72756262,-!p12@MSC!0.69!3.89!MSC;;chr3:141087454..141087465,+!p19@ZBTB38!0.69!3.89!ZBTB38;;chr4:174450089..174450153,-!p2@HAND2!0.69!3.89!HAND2;;chr2:70142232..70142251,+!p1@MXD1!0.68!24.26!MXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.68!18.54!ZBTB20;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.87!TWIST2;;chr20:6748325..6748352,+!p1@BMP2!0.68!5.72!BMP2;;chr9:110250697..110250738,-!p2@KLF4!0.68!4.58!KLF4;;chr6:126102339..126102351,+!p12@NCOA7!0.67!3.66!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.36!IFI16;;chr22:38597987..38598021,+!p2@MAFF!0.66!24.94!MAFF;;chr2:157189180..157189290,-!p1@NR4A2!0.66!21.51!NR4A2;;chr19:16435523..16435619,+!p2@KLF2!0.65!5.03!KLF2;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.43!ZNF668;;chr2:102091566..102091581,-!p1@RFX8!0.65!3.43!RFX8;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!28.83!ZMAT3;;chr11:65687158..65687216,+!p4@DRAP1!0.64!22.43!DRAP1;;chr12:80085255..80085284,-!p9@PAWR!0.64!5.26!PAWR;;chr11:65667846..65667868,-!p1@FOSL1!0.63!103.89!FOSL1;;chr18:3451646..3451691,+!p3@TGIF1!0.63!9.84!TGIF1;;chr22:38598057..38598071,+!p3@MAFF!0.63!8.47!MAFF;;chr2:46612334..46612349,+!p6@EPAS1!0.63!4.58!EPAS1;;chr18:3450334..3450341,+!p15@TGIF1!0.63!4.35!TGIF1;;chr12:54447599..54447630,+!p3@HOXC4!0.63!4.12!HOXC4;;chr5:137801160..137801176,+!p1@EGR1!0.62!376.44!EGR1;;chr1:151032782..151032801,+!p4@MLLT11!0.62!7.09!MLLT11;;chr5:72744445..72744466,-!p2@FOXD1!0.62!5.72!FOXD1;;chr18:19749386..19749404,+!p2@GATA6!0.62!4.81!GATA6;;chr1:170632477..170632506,+!p6@PRRX1!0.62!3.20!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.62!3.20!RFX8;;chr7:14029283..14029311,-!p1@ETV1!0.61!19.45!ETV1;;chr10:111985713..111985774,+!p2@MXI1!0.60!34.33!MXI1;;chr18:3449527..3449582,+!p6@TGIF1!0.60!6.41!TGIF1;;chr12:72056749..72056767,+!p6@THAP2!0.60!3.43!THAP2;;chr10:64018918..64018936,+!p2@ZNF365!0.60!2.97!ZNF365;;chr1:170632051..170632081,+!p16@PRRX1!0.60!2.97!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.59!78.26!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.59!47.60!ARID5B;;chr7:19157248..19157268,-!p1@TWIST1!0.59!9.38!TWIST1;;chr3:126076264..126076305,-!p2@KLF15!0.59!4.35!KLF15;;chr18:3450161..3450183,+!p1@TGIF1!0.58!118.77!TGIF1;;chr20:50721803..50721857,-!p2@ZFP64!0.58!4.81!ZFP64;;chr1:221052840..221052875,+!p4@HLX!0.58!3.43!HLX;;chr3:141087393..141087426,+!p3@ZBTB38!0.57!13.04!ZBTB38;;chr10:64576105..64576133,-!p1@EGR2!0.57!6.41!EGR2;;chr7:28448995..28449011,+!p4@CREB5!0.57!4.12!CREB5;;chr7:115670804..115670825,-!p1@TFEC!0.57!2.75!TFEC;;chr1:170632028..170632043,+!p20@PRRX1!0.57!2.75!PRRX1;;chr1:221054853..221054873,+!p9@HLX!0.57!2.75!HLX;;chr21:30671690..30671762,+!p2@BACH1!0.56!10.76!BACH1;;chr7:44143978..44143989,+!p2@AEBP1!0.56!5.49!AEBP1;;chr15:37391271..37391376,-!p5@MEIS2!0.56!5.49!MEIS2;;chr16:86544113..86544145,+!p1@FOXF1!0.56!3.43!FOXF1;;chr1:170632959..170632987,+!p4@PRRX1!0.56!2.97!PRRX1;;chr13:45010939..45011033,-!p1@TSC22D1!0.55!215.57!TSC22D1;;chr14:62162285..62162296,+!p3@HIF1A!0.55!16.48!HIF1A;;chr12:66218598..66218645,+!p2@HMGA2!0.55!14.42!HMGA2;;chr18:3449821..3449860,+!p7@TGIF1!0.55!5.26!TGIF1;;chr19:47922750..47922795,-!p1@MEIS3!0.55!4.58!MEIS3;;chr1:170632683..170632696,+!p12@PRRX1!0.55!2.52!PRRX1;;chr7:1577899..1577943,+!p3@MAFK!0.55!2.52!MAFK;;chr19:16435625..16435682,+!p1@KLF2!0.54!101.83!KLF2;;chr2:101436564..101436647,+!p1@NPAS2!0.54!64.53!NPAS2;;chr17:46621937..46621966,-!p2@HOXB2!0.54!8.01!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.54!6.41!HOXB2;;chr17:20492136..20492165,+!p1@MEIS3P2!0.54!4.35!MEIS3P2;;chr12:26277817..26277863,-!p2@BHLHE41!0.54!3.66!BHLHE41;;chr9:35732647..35732678,+!p2@CREB3!0.53!16.71!CREB3;;chr2:178129358..178129403,-!p5@NFE2L2!0.53!11.90!NFE2L2;;chr5:321810..321877,+!p1@AHRR!0.53!9.15!AHRR;;chr9:110251836..110251887,-!p4@KLF4!0.53!3.43!KLF4;;chr3:126076242..126076257,-!p1@KLF15!0.53!3.20!KLF15;;chr12:56753869..56753930,-!p1@STAT2!0.52!133.41!STAT2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.52!36.61!ZC3H12A;;chr7:28448965..28448994,+!p2@CREB5!0.52!10.07!CREB5;;chr18:3449586..3449617,+!p8@TGIF1!0.52!4.12!TGIF1;;chr22:38598042..38598052,+!p4@MAFF!0.52!4.12!MAFF;;chr1:158985493..158985535,+!p4@IFI16!0.52!3.89!IFI16;;chr5:137804130..137804156,+!p5@EGR1!0.52!2.52!EGR1;;chr1:170632723..170632739,+!p8@PRRX1!0.52!2.29!PRRX1;;chr11:65668011..65668020,-!p3@FOSL1!0.52!2.29!FOSL1;;chr12:66218904..66218913,+!p11@HMGA2!0.52!2.29!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!0.52!2.29!SMAD3;;chr12:57914286..57914304,-!p1@DDIT3!0.51!106.18!DDIT3;;chr14:62162258..62162269,+!p2@HIF1A!0.51!28.15!HIF1A;;chr9:132427972..132428056,+!p1@PRRX2!0.51!3.20!PRRX2;;chr22:29196433..29196445,-!p4@XBP1!0.51!2.52!XBP1;;chr10:22292613..22292674,-!p1@DNAJC1!0.50!85.13!DNAJC1;;chr4:4861385..4861398,+!p1@MSX1!0.50!8.01!MSX1;;chr12:66218255..66218304,+!p3@HMGA2!0.50!7.09!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!0.50!6.87!NCOA7;;chr6:32095523..32095564,-!p2@ATF6B!0.50!3.20!ATF6B;;chr2:8822176..8822196,+!p1@ID2!0.49!398.18!ID2;;chr20:48807351..48807384,+!p1@CEBPB!0.49!290.63!CEBPB;;chr9:35732592..35732640,+!p1@CREB3!0.49!36.84!CREB3;;chr12:26277956..26277980,-!p1@BHLHE41!0.49!9.61!BHLHE41;;chr10:22292591..22292606,-!p2@DNAJC1!0.49!3.89!DNAJC1;;chr2:85980951..85981004,+!p1@ATOH8!0.49!3.89!ATOH8;;chr12:72056773..72056796,+!p3@THAP2!0.49!2.97!THAP2;;chr17:46675420..46675465,-!p3@HOXB6!0.49!2.52!HOXB6;;chr3:21792790..21792824,-!p4@ZNF385D!0.49!2.06!ZNF385D;;chr7:27169801..27169844,-!p2@HOXA4!0.49!2.06!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.49!2.06!HOXA5;;chr7:28449015..28449024,+!p6@CREB5!0.49!2.06!CREB5;;chr8:72756522..72756533,-!p13@MSC!0.49!2.06!MSC;;chr10:45495946..45495976,+!p2@ZNF22!0.49!2.06!ZNF22;;chr1:170633245..170633256,+!p14@PRRX1!0.49!2.06!PRRX1;;chr1:221053444..221053473,+!p8@HLX!0.49!2.06!HLX;;chr7:17338266..17338282,+!p1@AHR!0.48!29.29!AHR;;chr5:72744594..72744609,-!p1@FOXD1!0.48!11.90!FOXD1;;chr8:22550982..22550999,-!p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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.97!92.91!TCF21;;chr8:72756637..72756664,-!p3@MSC!1.38!26.09!MSC;;chr8:25902876..25902936,-!p1@EBF2!1.35!21.28!EBF2;;chr19:45971246..45971265,+!p1@FOSB!1.31!349.44!FOSB;;chr8:72756063..72756125,-!p1@MSC!1.28!36.39!MSC;;chr1:170632285..170632309,+!p1@PRRX1!1.28!20.37!PRRX1;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.71!GATA4;;chr17:46132044..46132080,+!p4@NFE2L1!1.22!15.56!NFE2L1;;chr3:141105705..141105770,+!p4@ZBTB38!1.20!17.85!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!1.19!21.28!MSC;;chr8:72756667..72756736,-!p2@MSC!1.18!22.20!MSC;;chr8:72755987..72756002,-!p7@MSC!1.13!12.36!MSC;;chr17:38256799..38256815,-!p3@NR1D1!1.12!22.20!NR1D1;;chr21:36260773..36260804,-!p7@RUNX1!1.08!14.87!RUNX1;;chr8:72756213..72756243,-!p5@MSC!1.08!14.19!MSC;;chr19:50432453..50432468,+!p1@ATF5!1.05!580.34!ATF5;;chr19:50435736..50435781,+!p3@ATF5!1.05!14.19!ATF5;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.49!CREB3L1;;chr8:55370487..55370503,+!p1@SOX17!1.00!8.92!SOX17;;chr1:212782094..212782109,+!p1@ATF3!0.98!238.45!ATF3;;chr1:158979872..158979898,+!p3@IFI16!0.98!27.00!IFI16;;chr22:38598086..38598105,+!p1@MAFF!0.97!91.54!MAFF;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.11!OSR1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.94!412.60!NFKBIZ;;chr7:35293685..35293718,-!p1@TBX20!0.94!7.78!TBX20;;chr17:46126136..46126152,+!p1@NFE2L1!0.93!397.95!NFE2L1;;chr1:59249688..59249703,-!p3@JUN!0.93!47.37!JUN;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.70!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.92!95.43!NR4A1;;chr1:221052994..221053008,+!p6@HLX!0.91!8.47!HLX;;chr3:157823517..157823562,-!p1@SHOX2!0.90!7.55!SHOX2;;chr9:110252035..110252057,-!p1@KLF4!0.89!113.28!KLF4;;chr20:50179368..50179392,-!p2@NFATC2!0.88!8.70!NFATC2;;chr15:83953397..83953425,-!p1@BNC1!0.88!7.55!BNC1;;chr6:126102292..126102329,+!p3@NCOA7!0.87!22.43!NCOA7;;chr8:49833948..49833973,-!p2@SNAI2!0.86!41.65!SNAI2;;chr1:221053049..221053075,+!p3@HLX!0.86!11.21!HLX;;chr1:170632137..170632172,+!p10@PRRX1!0.86!6.18!PRRX1;;chr12:10870927..10870966,-!p5@CSDA!0.86!6.18!CSDA;;chr8:72756380..72756427,-!p8@MSC!0.86!6.18!MSC;;chr17:38256822..38256851,-!p1@NR1D1!0.85!51.03!NR1D1;;chr15:42749722..42749739,-!p2@ZFP106!0.85!11.21!ZFP106;;chr1:170633348..170633399,+!p2@PRRX1!0.85!8.47!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.84!19.91!TWIST2;;chr19:33865009..33865090,+!p3@CEBPG!0.84!8.01!CEBPG;;chr2:113994491..113994515,-!p7@PAX8!0.84!5.95!PAX8;;chr12:77459306..77459365,-!p1@E2F7!0.83!76.89!E2F7;;chr7:19157043..19157088,-!p2@TWIST1!0.83!15.10!TWIST1;;chr14:29235961..29236008,+!p1@FOXG1!0.83!5.72!FOXG1;;chr14:75745523..75745537,+!p1@FOS!0.80!684.92!FOS;;chr14:29234581..29234601,+!p2@FOXG1!0.80!5.26!FOXG1;;chr5:137804484..137804498,+!p2@EGR1!0.79!22.20!EGR1;;chr3:12329397..12329433,+!p2@PPARG!0.79!12.59!PPARG;;chr1:221052776..221052799,+!p1@HLX!0.79!9.84!HLX;;chr12:72056800..72056834,+!p1@THAP2!0.79!7.09!THAP2;;chr17:46128217..46128243,+!p11@NFE2L1!0.78!5.03!NFE2L1;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.03!KDM5D;;chr2:185463247..185463263,+!p1@ZNF804A!0.77!9.15!ZNF804A;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.02!GATA6;;chr11:46299539..46299620,+!p2@CREB3L1!0.76!8.47!CREB3L1;;chr8:72756194..72756208,-!p9@MSC!0.76!4.81!MSC;;chr11:65687362..65687436,+!p3@DRAP1!0.75!22.88!DRAP1;;chr19:42636586..42636607,-!p1@POU2F2!0.75!13.73!POU2F2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.18!FOS;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.58!ZFY;;chr2:145275162..145275202,-!p2@ZEB2!0.74!29.29!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.74!21.05!DRAP1;;chr19:53360870..53360873,-!p1@ZNF468!0.74!18.08!ZNF468;;chr1:170632250..170632277,+!p7@PRRX1!0.73!4.35!PRRX1;;chr18:3450293..3450304,+!p4@TGIF1!0.72!11.44!TGIF1;;chr3:5021268..5021282,+!p4@BHLHE40!0.72!9.38!BHLHE40;;chr1:158979851..158979865,+!p5@IFI16!0.71!9.84!IFI16;;chr1:170632115..170632136,+!p9@PRRX1!0.71!4.12!PRRX1;;chr14:29236269..29236285,+!p3@FOXG1!0.71!4.12!FOXG1;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.70!7.09!MEIS3P1;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.22!SNAI2;;chr8:72756023..72756055,-!p6@MSC!0.69!5.03!MSC;;chr8:72756251..72756262,-!p12@MSC!0.69!3.89!MSC;;chr3:141087454..141087465,+!p19@ZBTB38!0.69!3.89!ZBTB38;;chr4:174450089..174450153,-!p2@HAND2!0.69!3.89!HAND2;;chr2:70142232..70142251,+!p1@MXD1!0.68!24.26!MXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.68!18.54!ZBTB20;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.87!TWIST2;;chr20:6748325..6748352,+!p1@BMP2!0.68!5.72!BMP2;;chr9:110250697..110250738,-!p2@KLF4!0.68!4.58!KLF4;;chr6:126102339..126102351,+!p12@NCOA7!0.67!3.66!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.66!39.36!IFI16;;chr22:38597987..38598021,+!p2@MAFF!0.66!24.94!MAFF;;chr2:157189180..157189290,-!p1@NR4A2!0.66!21.51!NR4A2;;chr19:16435523..16435619,+!p2@KLF2!0.65!5.03!KLF2;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.43!ZNF668;;chr2:102091566..102091581,-!p1@RFX8!0.65!3.43!RFX8;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!28.83!ZMAT3;;chr11:65687158..6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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000011,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor1.CNhs12368.11752-123G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11752-123G6 | |id=FF:11752-123G6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000271 | ||
|is_obsolete= | |||
|library_id=CNhs12368 | |||
|library_id_phase_based=2:CNhs12368 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11752 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11752 | |||
|name=mesenchymal precursor cell - cardiac, donor1 | |name=mesenchymal precursor cell - cardiac, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12368,LSID914,release011,COMPLETED | |profile_hcage=CNhs12368,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0033442057847784,0,-0.0665695356662943,0.122756878678907,0,0,0,0,0,0,0,0,0,0,0,0.163662235871164,0,0.221982123509992,0,0,0.0447476819101155,0,0,0.353939101034121,0,0,-0.0434612259586314,0,0,0,0,0,0,0,0,0,0,0.895709883844423,0,-0.0640685990304306,0.089495363820231,0,0,0,0,0,0,0,0.057616096822748,0,0,0,0,0,0,0,0.185258114249975,0,0,0.129647921365959,0,0,0,0,0,0,0,0,0.089495363820231,0,0,0,0,0,0,0,0,0,0,0,0.00335437403101956,0,0,0,0,0.0447476819101155,0,0,-0.146745780426449,-0.121702038875638,0,0.089495363820231,0,0,-0.00853998741747551,0.132218979760309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0145424759868787,0,0,0,0,-0.122250741667821,0,0,0.0236333372088193,0,0,0 | |||
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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=34.92525 | |rna_weight_ug=34.92525 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 100: | ||
|sample_tissue=heart | |sample_tissue=heart | ||
|top_motifs=NKX3-1:2.2371932277;XBP1:2.06143352007;HIF1A:1.81703629484;bHLH_family:1.7558351343;ALX4:1.75477194829;HSF1,2:1.3893086788;MAFB:1.30298949596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.25568075011;ATF6:1.23363048148;TP53:1.19296830589;PAX1,9:1.11432470392;HOX{A5,B5}:1.10249756752;HLF:1.10110945074;EBF1:1.05741249054;AIRE:1.0290631758;NANOG{mouse}:1.01909357;SREBF1,2:1.00693230253;RXR{A,B,G}:1.00543966912;EN1,2:1.00209521458;TAL1_TCF{3,4,12}:0.986835739171;NFE2L2:0.96939828799;IKZF1:0.944081959895;HES1:0.912925813795;UFEwm:0.89099948531;HOX{A4,D4}:0.890771711779;ESR1:0.889542891017;NFE2L1:0.8874385209;ZNF238:0.86560113151;CEBPA,B_DDIT3:0.860383836885;NFATC1..3:0.768394001065;TLX2:0.708699160195;NFE2:0.702872471706;NFIX:0.660290195708;HMX1:0.657297085571;ELK1,4_GABP{A,B1}:0.627503534821;NKX2-1,4:0.593818417516;MYBL2:0.590990887219;TEAD1:0.590161558946;BACH2:0.574224386809;RXRA_VDR{dimer}:0.569452289588;PAX4:0.566587972808;NR3C1:0.558955263144;STAT2,4,6:0.541358511785;PAX2:0.537796382807;FOS_FOS{B,L1}_JUN{B,D}:0.523186523393;TFCP2:0.507413857115;HMGA1,2:0.501906412858;TEF:0.479234527636;ZBTB6:0.4770942655;FOXO1,3,4:0.468302025645;LHX3,4:0.446495046327;FOXP3:0.4445541095;EVI1:0.430075599283;CRX:0.428761628224;TBX4,5:0.427793303481;TLX1..3_NFIC{dimer}:0.388245487244;PPARG:0.380745649704;RFX1:0.346871165954;GZF1:0.34648573887;FOSL2:0.34508843111;AHR_ARNT_ARNT2:0.311066576778;GTF2A1,2:0.309872861676;TFAP4:0.305759957792;NFKB1_REL_RELA:0.294202003937;TFAP2B:0.272784863729;TBP:0.270879997883;ATF2:0.244304107996;NKX2-2,8:0.230511747141;ALX1:0.223148914995;ATF4:0.171683244498;STAT1,3:0.171031812606;GFI1B:0.16415961843;PRDM1:0.159314598113;KLF4:0.144414907977;SRF:0.108386129112;CREB1:0.106915295865;ATF5_CREB3:0.0891257396281;ARID5B:0.0876077017445;IRF1,2:0.0857193939276;GLI1..3:0.0779740406225;POU3F1..4:0.0775099425769;GTF2I:0.0762478027611;PATZ1:0.0755141258848;BPTF:0.0674120714147;ESRRA:0.0605993490201;REST:0.0485249128466;NFIL3:0.0376175786717;AR:0.0172641071918;MYFfamily:0.00197526545094;SP1:-0.0100925018676;POU1F1:-0.0135583111797;ZNF143:-0.0314548206981;NHLH1,2:-0.0362232586318;MAZ:-0.03639402393;SMAD1..7,9:-0.0540197801984;SOX17:-0.0561612136628;NR6A1:-0.0632533236153;MEF2{A,B,C,D}:-0.0738436997357;HNF1A:-0.0840166489986;ZNF148:-0.088689025021;FOX{I1,J2}:-0.0912409281225;PAX6:-0.0944453231189;ZBTB16:-0.0951574794009;RUNX1..3:-0.100072848115;HAND1,2:-0.121811286405;JUN:-0.138773844451;ZNF423:-0.140650822732;SPZ1:-0.145451322811;STAT5{A,B}:-0.146652557986;NKX3-2:-0.149610073855;ADNP_IRX_SIX_ZHX:-0.152536082954;PAX8:-0.170755711953;IRF7:-0.17817678637;FOX{D1,D2}:-0.18106853094;NRF1:-0.182433480745;LMO2:-0.182461439513;PAX5:-0.187814845164;HIC1:-0.192807879894;ONECUT1,2:-0.198187433458;FOXL1:-0.19896974674;MZF1:-0.204793312723;CDC5L:-0.211098751831;YY1:-0.212747638558;GATA4:-0.219731632264;MTF1:-0.229360631292;ZIC1..3:-0.23028940009;ELF1,2,4:-0.242624830121;ZFP161:-0.24683064494;FOXN1:-0.251259490441;GCM1,2:-0.272834306681;HNF4A_NR2F1,2:-0.298291207068;PRRX1,2:-0.303196663019;HOXA9_MEIS1:-0.308667886776;TFAP2{A,C}:-0.348524720887;POU6F1:-0.362285598664;GFI1:-0.371163713974;PBX1:-0.37250726696;MTE{core}:-0.39506021193;PAX3,7:-0.395517658128;SPI1:-0.412399690105;EGR1..3:-0.425728931016;MYOD1:-0.434071071948;SOX2:-0.435581047152;RORA:-0.45824734959;DMAP1_NCOR{1,2}_SMARC:-0.476439989434;RREB1:-0.478871730567;FOXQ1:-0.481512470794;ETS1,2:-0.482779845527;LEF1_TCF7_TCF7L1,2:-0.495224449309;XCPE1{core}:-0.505990779425;RFX2..5_RFXANK_RFXAP:-0.512514502726;SPIB:-0.536609032548;EP300:-0.56829973469;MED-1{core}:-0.591495689256;CDX1,2,4:-0.612094104178;GATA6:-0.623324011993;HOX{A6,A7,B6,B7}:-0.623994420069;HBP1_HMGB_SSRP1_UBTF:-0.655686404105;TFDP1:-0.672346892572;ZNF384:-0.69306750674;NFY{A,B,C}:-0.708402489125;ZEB1:-0.712926135023;SNAI1..3:-0.714172533151;DBP:-0.722289283992;NKX6-1,2:-0.735081445791;NR1H4:-0.753013376157;TGIF1:-0.753546065602;SOX5:-0.787902200628;MYB:-0.796491541584;FOXA2:-0.812842526042;CUX2:-0.815511552266;NR5A1,2:-0.869108686705;PDX1:-0.885824353477;RBPJ:-0.88853425784;SOX{8,9,10}:-0.894137261481;FOXD3:-0.941397427158;POU5F1:-0.98111499848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.998295133665;FOX{F1,F2,J1}:-1.02479232932;FOXP1:-1.07647636039;FOXM1:-1.12510863483;BREu{core}:-1.13807672592;VSX1,2:-1.17143269329;TOPORS:-1.17910902526;OCT4_SOX2{dimer}:-1.19763298491;NANOG:-1.25194172945;T:-1.30536728049;E2F1..5:-1.31933769871;IKZF2:-1.32815673904;NKX2-3_NKX2-5:-1.43951752596;POU2F1..3:-1.63971248385;PITX1..3:-1.71694850992 | |top_motifs=NKX3-1:2.2371932277;XBP1:2.06143352007;HIF1A:1.81703629484;bHLH_family:1.7558351343;ALX4:1.75477194829;HSF1,2:1.3893086788;MAFB:1.30298949596;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.25568075011;ATF6:1.23363048148;TP53:1.19296830589;PAX1,9:1.11432470392;HOX{A5,B5}:1.10249756752;HLF:1.10110945074;EBF1:1.05741249054;AIRE:1.0290631758;NANOG{mouse}:1.01909357;SREBF1,2:1.00693230253;RXR{A,B,G}:1.00543966912;EN1,2:1.00209521458;TAL1_TCF{3,4,12}:0.986835739171;NFE2L2:0.96939828799;IKZF1:0.944081959895;HES1:0.912925813795;UFEwm:0.89099948531;HOX{A4,D4}:0.890771711779;ESR1:0.889542891017;NFE2L1:0.8874385209;ZNF238:0.86560113151;CEBPA,B_DDIT3:0.860383836885;NFATC1..3:0.768394001065;TLX2:0.708699160195;NFE2:0.702872471706;NFIX:0.660290195708;HMX1:0.657297085571;ELK1,4_GABP{A,B1}:0.627503534821;NKX2-1,4:0.593818417516;MYBL2:0.590990887219;TEAD1:0.590161558946;BACH2:0.574224386809;RXRA_VDR{dimer}:0.569452289588;PAX4:0.566587972808;NR3C1:0.558955263144;STAT2,4,6:0.541358511785;PAX2:0.537796382807;FOS_FOS{B,L1}_JUN{B,D}:0.523186523393;TFCP2:0.507413857115;HMGA1,2:0.501906412858;TEF:0.479234527636;ZBTB6:0.4770942655;FOXO1,3,4:0.468302025645;LHX3,4:0.446495046327;FOXP3:0.4445541095;EVI1:0.430075599283;CRX:0.428761628224;TBX4,5:0.427793303481;TLX1..3_NFIC{dimer}:0.388245487244;PPARG:0.380745649704;RFX1:0.346871165954;GZF1:0.34648573887;FOSL2:0.34508843111;AHR_ARNT_ARNT2:0.311066576778;GTF2A1,2:0.309872861676;TFAP4:0.305759957792;NFKB1_REL_RELA:0.294202003937;TFAP2B:0.272784863729;TBP:0.270879997883;ATF2:0.244304107996;NKX2-2,8:0.230511747141;ALX1:0.223148914995;ATF4:0.171683244498;STAT1,3:0.171031812606;GFI1B:0.16415961843;PRDM1:0.159314598113;KLF4:0.144414907977;SRF:0.108386129112;CREB1:0.106915295865;ATF5_CREB3:0.0891257396281;ARID5B:0.0876077017445;IRF1,2:0.0857193939276;GLI1..3:0.0779740406225;POU3F1..4:0.0775099425769;GTF2I:0.0762478027611;PATZ1:0.0755141258848;BPTF:0.0674120714147;ESRRA:0.0605993490201;REST:0.0485249128466;NFIL3:0.0376175786717;AR:0.0172641071918;MYFfamily:0.00197526545094;SP1:-0.0100925018676;POU1F1:-0.0135583111797;ZNF143:-0.0314548206981;NHLH1,2:-0.0362232586318;MAZ:-0.03639402393;SMAD1..7,9:-0.0540197801984;SOX17:-0.0561612136628;NR6A1:-0.0632533236153;MEF2{A,B,C,D}:-0.0738436997357;HNF1A:-0.0840166489986;ZNF148:-0.088689025021;FOX{I1,J2}:-0.0912409281225;PAX6:-0.0944453231189;ZBTB16:-0.0951574794009;RUNX1..3:-0.100072848115;HAND1,2:-0.121811286405;JUN:-0.138773844451;ZNF423:-0.140650822732;SPZ1:-0.145451322811;STAT5{A,B}:-0.146652557986;NKX3-2:-0.149610073855;ADNP_IRX_SIX_ZHX:-0.152536082954;PAX8:-0.170755711953;IRF7:-0.17817678637;FOX{D1,D2}:-0.18106853094;NRF1:-0.182433480745;LMO2:-0.182461439513;PAX5:-0.187814845164;HIC1:-0.192807879894;ONECUT1,2:-0.198187433458;FOXL1:-0.19896974674;MZF1:-0.204793312723;CDC5L:-0.211098751831;YY1:-0.212747638558;GATA4:-0.219731632264;MTF1:-0.229360631292;ZIC1..3:-0.23028940009;ELF1,2,4:-0.242624830121;ZFP161:-0.24683064494;FOXN1:-0.251259490441;GCM1,2:-0.272834306681;HNF4A_NR2F1,2:-0.298291207068;PRRX1,2:-0.303196663019;HOXA9_MEIS1:-0.308667886776;TFAP2{A,C}:-0.348524720887;POU6F1:-0.362285598664;GFI1:-0.371163713974;PBX1:-0.37250726696;MTE{core}:-0.39506021193;PAX3,7:-0.395517658128;SPI1:-0.412399690105;EGR1..3:-0.425728931016;MYOD1:-0.434071071948;SOX2:-0.435581047152;RORA:-0.45824734959;DMAP1_NCOR{1,2}_SMARC:-0.476439989434;RREB1:-0.478871730567;FOXQ1:-0.481512470794;ETS1,2:-0.482779845527;LEF1_TCF7_TCF7L1,2:-0.495224449309;XCPE1{core}:-0.505990779425;RFX2..5_RFXANK_RFXAP:-0.512514502726;SPIB:-0.536609032548;EP300:-0.56829973469;MED-1{core}:-0.591495689256;CDX1,2,4:-0.612094104178;GATA6:-0.623324011993;HOX{A6,A7,B6,B7}:-0.623994420069;HBP1_HMGB_SSRP1_UBTF:-0.655686404105;TFDP1:-0.672346892572;ZNF384:-0.69306750674;NFY{A,B,C}:-0.708402489125;ZEB1:-0.712926135023;SNAI1..3:-0.714172533151;DBP:-0.722289283992;NKX6-1,2:-0.735081445791;NR1H4:-0.753013376157;TGIF1:-0.753546065602;SOX5:-0.787902200628;MYB:-0.796491541584;FOXA2:-0.812842526042;CUX2:-0.815511552266;NR5A1,2:-0.869108686705;PDX1:-0.885824353477;RBPJ:-0.88853425784;SOX{8,9,10}:-0.894137261481;FOXD3:-0.941397427158;POU5F1:-0.98111499848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.998295133665;FOX{F1,F2,J1}:-1.02479232932;FOXP1:-1.07647636039;FOXM1:-1.12510863483;BREu{core}:-1.13807672592;VSX1,2:-1.17143269329;TOPORS:-1.17910902526;OCT4_SOX2{dimer}:-1.19763298491;NANOG:-1.25194172945;T:-1.30536728049;E2F1..5:-1.31933769871;IKZF2:-1.32815673904;NKX2-3_NKX2-5:-1.43951752596;POU2F1..3:-1.63971248385;PITX1..3:-1.71694850992 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11752-123G6;search_select_hide=table117:FF:11752-123G6 | |||
}} | }} | ||
Latest revision as of 18:17, 4 June 2020
| Name: | mesenchymal precursor cell - cardiac, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12368 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12368
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12368
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.965 |
| 10 | 10 | 0.335 |
| 100 | 100 | 0.988 |
| 101 | 101 | 0.661 |
| 102 | 102 | 0.585 |
| 103 | 103 | 0.109 |
| 104 | 104 | 0.753 |
| 105 | 105 | 0.66 |
| 106 | 106 | 0.438 |
| 107 | 107 | 0.621 |
| 108 | 108 | 0.174 |
| 109 | 109 | 0.0592 |
| 11 | 11 | 0.474 |
| 110 | 110 | 0.334 |
| 111 | 111 | 0.673 |
| 112 | 112 | 0.105 |
| 113 | 113 | 8.96369e-4 |
| 114 | 114 | 0.374 |
| 115 | 115 | 0.619 |
| 116 | 116 | 0.0515 |
| 117 | 117 | 0.0373 |
| 118 | 118 | 0.713 |
| 119 | 119 | 0.729 |
| 12 | 12 | 0.932 |
| 120 | 120 | 0.11 |
| 121 | 121 | 0.624 |
| 122 | 122 | 0.0811 |
| 123 | 123 | 8.28523e-4 |
| 124 | 124 | 0.0465 |
| 125 | 125 | 0.916 |
| 126 | 126 | 0.903 |
| 127 | 127 | 0.817 |
| 128 | 128 | 0.936 |
| 129 | 129 | 0.214 |
| 13 | 13 | 0.415 |
| 130 | 130 | 0.567 |
| 131 | 131 | 0.133 |
| 132 | 132 | 0.401 |
| 133 | 133 | 0.538 |
| 134 | 134 | 0.569 |
| 135 | 135 | 0.541 |
| 136 | 136 | 0.229 |
| 137 | 137 | 0.749 |
| 138 | 138 | 0.943 |
| 139 | 139 | 0.141 |
| 14 | 14 | 0.446 |
| 140 | 140 | 0.721 |
| 141 | 141 | 0.51 |
| 142 | 142 | 0.749 |
| 143 | 143 | 0.213 |
| 144 | 144 | 0.534 |
| 145 | 145 | 0.976 |
| 146 | 146 | 0.952 |
| 147 | 147 | 0.273 |
| 148 | 148 | 0.909 |
| 149 | 149 | 0.239 |
| 15 | 15 | 0.797 |
| 150 | 150 | 0.17 |
| 151 | 151 | 0.832 |
| 152 | 152 | 0.0271 |
| 153 | 153 | 0.448 |
| 154 | 154 | 0.302 |
| 155 | 155 | 0.00511 |
| 156 | 156 | 0.163 |
| 157 | 157 | 0.943 |
| 158 | 158 | 0.065 |
| 159 | 159 | 0.126 |
| 16 | 16 | 0.0452 |
| 160 | 160 | 0.296 |
| 161 | 161 | 0.333 |
| 162 | 162 | 0.194 |
| 163 | 163 | 0.556 |
| 164 | 164 | 0.00988 |
| 165 | 165 | 0.702 |
| 166 | 166 | 0.357 |
| 167 | 167 | 0.383 |
| 168 | 168 | 0.855 |
| 169 | 169 | 0.119 |
| 17 | 17 | 0.549 |
| 18 | 18 | 0.0228 |
| 19 | 19 | 0.132 |
| 2 | 2 | 0.797 |
| 20 | 20 | 0.326 |
| 21 | 21 | 0.52 |
| 22 | 22 | 0.142 |
| 23 | 23 | 0.24 |
| 24 | 24 | 0.87 |
| 25 | 25 | 0.0579 |
| 26 | 26 | 0.703 |
| 27 | 27 | 0.881 |
| 28 | 28 | 0.841 |
| 29 | 29 | 0.0674 |
| 3 | 3 | 0.696 |
| 30 | 30 | 0.973 |
| 31 | 31 | 0.535 |
| 32 | 32 | 2.40754e-5 |
| 33 | 33 | 0.669 |
| 34 | 34 | 0.646 |
| 35 | 35 | 0.89 |
| 36 | 36 | 0.0483 |
| 37 | 37 | 0.00161 |
| 38 | 38 | 0.24 |
| 39 | 39 | 0.251 |
| 4 | 4 | 0.023 |
| 40 | 40 | 0.407 |
| 41 | 41 | 0.989 |
| 42 | 42 | 0.397 |
| 43 | 43 | 0.669 |
| 44 | 44 | 0.943 |
| 45 | 45 | 0.861 |
| 46 | 46 | 0.837 |
| 47 | 47 | 0.558 |
| 48 | 48 | 0.857 |
| 49 | 49 | 0.118 |
| 5 | 5 | 0.888 |
| 50 | 50 | 0.876 |
| 51 | 51 | 0.611 |
| 52 | 52 | 0.947 |
| 53 | 53 | 0.00918 |
| 54 | 54 | 0.959 |
| 55 | 55 | 0.216 |
| 56 | 56 | 0.658 |
| 57 | 57 | 0.723 |
| 58 | 58 | 0.12 |
| 59 | 59 | 0.427 |
| 6 | 6 | 0.357 |
| 60 | 60 | 0.565 |
| 61 | 61 | 0.677 |
| 62 | 62 | 0.13 |
| 63 | 63 | 0.553 |
| 64 | 64 | 0.886 |
| 65 | 65 | 0.97 |
| 66 | 66 | 0.201 |
| 67 | 67 | 0.319 |
| 68 | 68 | 0.614 |
| 69 | 69 | 0.321 |
| 7 | 7 | 0.141 |
| 70 | 70 | 0.747 |
| 71 | 71 | 0.522 |
| 72 | 72 | 0.685 |
| 73 | 73 | 0.00154 |
| 74 | 74 | 0.0608 |
| 75 | 75 | 0.21 |
| 76 | 76 | 0.345 |
| 77 | 77 | 0.0109 |
| 78 | 78 | 0.018 |
| 79 | 79 | 0.509 |
| 8 | 8 | 0.517 |
| 80 | 80 | 0.663 |
| 81 | 81 | 0.8 |
| 82 | 82 | 0.958 |
| 83 | 83 | 0.758 |
| 84 | 84 | 0.857 |
| 85 | 85 | 0.159 |
| 86 | 86 | 0.19 |
| 87 | 87 | 0.00288 |
| 88 | 88 | 0.626 |
| 89 | 89 | 0.176 |
| 9 | 9 | 0.689 |
| 90 | 90 | 0.933 |
| 91 | 91 | 0.491 |
| 92 | 92 | 0.156 |
| 93 | 93 | 0.799 |
| 94 | 94 | 0.504 |
| 95 | 95 | 0.011 |
| 96 | 96 | 0.468 |
| 97 | 97 | 0.164 |
| 98 | 98 | 0.125 |
| 99 | 99 | 0.695 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12368
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000271 human cardiac mesenchymal precursor cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000034 (stem cell)
0000569 (cardiac mesenchymal cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000271 (human cardiac mesenchymal precursor cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000011 (migratory trunk neural crest cell)
CL:0000221 (ectodermal cell)
