FF:11755-123G9: Difference between revisions

Latest revision as of 18:18, 4 June 2020

Name:	mesenchymal precursor cell - cardiac, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs12371
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	heart
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005356

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12371		CAGE		DRX008554		DRR009426

Accession ID Hg19

Library id		BAM		CTSS
CNhs12371		DRZ000851		DRZ002236

Accession ID Hg38

Library id		BAM		CTSS
CNhs12371		DRZ012201		DRZ013586

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0137
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.322
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.276
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.126
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0413
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.309
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0758
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.306
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0599
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0599
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00578
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0102
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.232
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.172
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.113
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.367
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.24
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.329
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.597
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.309
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.394
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12371

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.202
MA0003.1	MA0003.1	0.723
MA0004.1	MA0004.1	0.292
MA0006.1	MA0006.1	0.456
MA0007.1	MA0007.1	0.549
MA0009.1	MA0009.1	0.341
MA0014.1	MA0014.1	0.641
MA0017.1	MA0017.1	0.513
MA0018.2	MA0018.2	0.074
MA0019.1	MA0019.1	0.302
MA0024.1	MA0024.1	0.126
MA0025.1	MA0025.1	0.196
MA0027.1	MA0027.1	0.9
MA0028.1	MA0028.1	0.00442
MA0029.1	MA0029.1	0.701
MA0030.1	MA0030.1	0.107
MA0031.1	MA0031.1	0.0228
MA0035.2	MA0035.2	0.0204
MA0038.1	MA0038.1	0.47
MA0039.2	MA0039.2	0.00991
MA0040.1	MA0040.1	0.487
MA0041.1	MA0041.1	0.517
MA0042.1	MA0042.1	0.941
MA0043.1	MA0043.1	0.259
MA0046.1	MA0046.1	0.0633
MA0047.2	MA0047.2	0.716
MA0048.1	MA0048.1	0.113
MA0050.1	MA0050.1	0.0169
MA0051.1	MA0051.1	0.132
MA0052.1	MA0052.1	0.641
MA0055.1	MA0055.1	0.0208
MA0057.1	MA0057.1	0.663
MA0058.1	MA0058.1	0.234
MA0059.1	MA0059.1	0.669
MA0060.1	MA0060.1	0.00161
MA0061.1	MA0061.1	0.428
MA0062.2	MA0062.2	0.51
MA0065.2	MA0065.2	0.154
MA0066.1	MA0066.1	0.756
MA0067.1	MA0067.1	0.133
MA0068.1	MA0068.1	0.67
MA0069.1	MA0069.1	0.441
MA0070.1	MA0070.1	0.801
MA0071.1	MA0071.1	0.136
MA0072.1	MA0072.1	0.671
MA0073.1	MA0073.1	0.53
MA0074.1	MA0074.1	0.359
MA0076.1	MA0076.1	0.0347
MA0077.1	MA0077.1	0.619
MA0078.1	MA0078.1	0.348
MA0079.2	MA0079.2	0.137
MA0080.2	MA0080.2	3.74578e-5
MA0081.1	MA0081.1	0.366
MA0083.1	MA0083.1	0.0596
MA0084.1	MA0084.1	0.0496
MA0087.1	MA0087.1	0.331
MA0088.1	MA0088.1	0.636
MA0090.1	MA0090.1	0.0178
MA0091.1	MA0091.1	0.385
MA0092.1	MA0092.1	0.442
MA0093.1	MA0093.1	0.531
MA0099.2	MA0099.2	2.03427e-9
MA0100.1	MA0100.1	0.757
MA0101.1	MA0101.1	0.0527
MA0102.2	MA0102.2	0.558
MA0103.1	MA0103.1	1.95124e-5
MA0104.2	MA0104.2	0.293
MA0105.1	MA0105.1	0.102
MA0106.1	MA0106.1	0.333
MA0107.1	MA0107.1	0.113
MA0108.2	MA0108.2	0.00298
MA0111.1	MA0111.1	0.138
MA0112.2	MA0112.2	0.338
MA0113.1	MA0113.1	0.911
MA0114.1	MA0114.1	0.141
MA0115.1	MA0115.1	0.376
MA0116.1	MA0116.1	0.511
MA0117.1	MA0117.1	0.681
MA0119.1	MA0119.1	0.132
MA0122.1	MA0122.1	0.698
MA0124.1	MA0124.1	0.681
MA0125.1	MA0125.1	0.282
MA0131.1	MA0131.1	0.966
MA0135.1	MA0135.1	0.104
MA0136.1	MA0136.1	8.29483e-4
MA0137.2	MA0137.2	0.163
MA0138.2	MA0138.2	0.16
MA0139.1	MA0139.1	0.842
MA0140.1	MA0140.1	0.418
MA0141.1	MA0141.1	0.76
MA0142.1	MA0142.1	0.774
MA0143.1	MA0143.1	0.819
MA0144.1	MA0144.1	0.0506
MA0145.1	MA0145.1	0.59
MA0146.1	MA0146.1	0.0361
MA0147.1	MA0147.1	0.623
MA0148.1	MA0148.1	0.672
MA0149.1	MA0149.1	0.812
MA0150.1	MA0150.1	0.0199
MA0152.1	MA0152.1	0.0022
MA0153.1	MA0153.1	0.39
MA0154.1	MA0154.1	0.511
MA0155.1	MA0155.1	0.959
MA0156.1	MA0156.1	0.615
MA0157.1	MA0157.1	0.0254
MA0159.1	MA0159.1	0.782
MA0160.1	MA0160.1	0.275
MA0162.1	MA0162.1	0.145
MA0163.1	MA0163.1	0.0156
MA0164.1	MA0164.1	0.886
MA0258.1	MA0258.1	0.305
MA0259.1	MA0259.1	0.362

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12371

Novel motif	Logo	P-value
1	1	0.754
10	10	0.246
100	100	0.763
101	101	0.501
102	102	0.445
103	103	0.121
104	104	0.898
105	105	0.153
106	106	0.769
107	107	0.361
108	108	0.405
109	109	0.637
11	11	0.651
110	110	0.15
111	111	0.196
112	112	0.879
113	113	0.00394
114	114	0.768
115	115	0.444
116	116	0.0705
117	117	0.336
118	118	0.471
119	119	0.956
12	12	0.583
120	120	0.133
121	121	0.924
122	122	0.354
123	123	1.3611e-4
124	124	0.0635
125	125	0.287
126	126	0.55
127	127	0.616
128	128	0.945
129	129	0.328
13	13	0.49
130	130	0.208
131	131	0.0696
132	132	0.705
133	133	0.632
134	134	0.438
135	135	0.45
136	136	0.766
137	137	0.985
138	138	0.952
139	139	0.297
14	14	0.2
140	140	0.92
141	141	0.92
142	142	0.435
143	143	0.191
144	144	0.463
145	145	0.761
146	146	0.763
147	147	0.0633
148	148	0.483
149	149	0.83
15	15	0.643
150	150	0.0125
151	151	0.154
152	152	0.453
153	153	0.479
154	154	0.503
155	155	0.00586
156	156	0.345
157	157	0.461
158	158	0.0117
159	159	0.0689
16	16	0.187
160	160	0.797
161	161	0.0295
162	162	0.495
163	163	0.289
164	164	0.094
165	165	0.61
166	166	0.324
167	167	0.532
168	168	0.434
169	169	0.418
17	17	0.912
18	18	0.119
19	19	0.284
2	2	0.958
20	20	0.844
21	21	0.943
22	22	0.987
23	23	0.211
24	24	0.498
25	25	0.159
26	26	0.47
27	27	0.463
28	28	0.483
29	29	0.0615
3	3	0.477
30	30	0.963
31	31	0.788
32	32	0.0018
33	33	0.273
34	34	0.649
35	35	0.625
36	36	0.492
37	37	0.11
38	38	0.438
39	39	0.311
4	4	0.271
40	40	0.33
41	41	0.923
42	42	0.972
43	43	0.677
44	44	0.505
45	45	0.574
46	46	0.547
47	47	0.94
48	48	0.707
49	49	0.0385
5	5	0.854
50	50	0.841
51	51	0.707
52	52	0.411
53	53	0.0162
54	54	0.753
55	55	0.389
56	56	0.207
57	57	0.974
58	58	0.17
59	59	0.96
6	6	0.289
60	60	0.576
61	61	0.474
62	62	0.559
63	63	0.996
64	64	0.533
65	65	0.991
66	66	0.643
67	67	0.609
68	68	0.766
69	69	0.352
7	7	0.321
70	70	0.138
71	71	0.591
72	72	0.95
73	73	0.0689
74	74	0.124
75	75	0.644
76	76	0.235
77	77	0.102
78	78	0.154
79	79	0.164
8	8	0.449
80	80	0.606
81	81	0.975
82	82	0.0932
83	83	0.891
84	84	0.787
85	85	0.435
86	86	0.351
87	87	0.0267
88	88	0.556
89	89	0.0684
9	9	0.612
90	90	0.244
91	91	0.596
92	92	0.852
93	93	0.511
94	94	0.907
95	95	0.134
96	96	0.821
97	97	0.418
98	98	0.111
99	99	0.106

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12371

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000271 human cardiac mesenchymal precursor cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000034 (stem cell)
0000569 (cardiac mesenchymal cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000271 (human cardiac mesenchymal precursor cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000011 (migratory trunk neural crest cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005356
+|accession_numbers=CAGE;DRX008554;DRR009426;DRZ000851;DRZ002236;DRZ012201;DRZ013586
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0002494,CL:0000034,CL:0000569
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.83!66.98!TCF21;;chr8:55370487..55370503,+!p1@SOX17!1.82!65.06!SOX17;;chr1:170632285..170632309,+!p1@PRRX1!1.35!24.10!PRRX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.32!24.10!ZBTB38;;chr8:11561684..11561751,+!p1@GATA4!1.29!18.63!GATA4;;chr20:6748325..6748352,+!p1@BMP2!1.27!25.43!BMP2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.59!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.23!18.48!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!1.21!15.23!TBX20;;chr8:72756637..72756664,-!p3@MSC!1.19!16.41!MSC;;chr21:36260773..36260804,-!p7@RUNX1!1.18!18.93!RUNX1;;chr3:141087393..141087426,+!p3@ZBTB38!1.13!50.12!ZBTB38;;chr10:131762504..131762555,-!p1@EBF3!1.07!10.79!EBF3;;chr3:141087454..141087465,+!p19@ZBTB38!1.06!10.50!ZBTB38;;chr21:38071430..38071456,+!p1@SIM2!1.05!10.20!SIM2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.20!KDM5D;;chr8:72756667..72756736,-!p2@MSC!0.99!13.75!MSC;;chrY:2803415..2803468,+!p1@ZFY!0.99!8.72!ZFY;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.51!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.21!HMGA2;;chr14:29234581..29234601,+!p2@FOXG1!0.98!8.58!FOXG1;;chr2:102091144..102091183,-!p2@RFX8!0.98!8.58!RFX8;;chr8:72756267..72756296,-!p4@MSC!0.96!12.12!MSC;;chr11:125034640..125034655,+!p1@PKNOX2!0.92!7.39!PKNOX2;;chr4:174450089..174450153,-!p2@HAND2!0.91!7.10!HAND2;;chr12:52445218..52445237,+!p1@NR4A1!0.88!87.68!NR4A1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!22.18!TWIST2;;chr18:19749541..19749557,+!p1@GATA6!0.88!21.88!GATA6;;chr1:170632959..170632987,+!p4@PRRX1!0.88!7.24!PRRX1;;chr19:42636586..42636607,-!p1@POU2F2!0.87!18.78!POU2F2;;chr11:46299199..46299233,+!p1@CREB3L1!0.86!34.15!CREB3L1;;chr20:50179368..50179392,-!p2@NFATC2!0.86!8.28!NFATC2;;chr14:29236269..29236285,+!p3@FOXG1!0.86!6.21!FOXG1;;chr9:16705069..16705086,-!p3@BNC2!0.86!6.21!BNC2;;chr8:72756063..72756125,-!p1@MSC!0.85!12.86!MSC;;chr2:102091566..102091581,-!p1@RFX8!0.85!6.06!RFX8;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.06!PRRX1;;chr3:157823517..157823562,-!p1@SHOX2!0.84!6.36!SHOX2;;chr14:29235961..29236008,+!p1@FOXG1!0.84!5.91!FOXG1;;chr1:151032860..151032918,+!p1@MLLT11!0.81!70.08!MLLT11;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.31!TWIST2;;chr11:65686732..65686756,+!p2@DRAP1!0.77!22.33!DRAP1;;chr12:66218836..66218888,+!p1@HMGA2!0.76!48.64!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.76!5.91!TBX18;;chr1:170632137..170632172,+!p10@PRRX1!0.76!4.73!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.76!4.73!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.75!10.20!EGR2;;chr11:46299539..46299620,+!p2@CREB3L1!0.75!8.28!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!0.75!4.58!PRRX1;;chr10:35484053..35484076,+!p1@CREM!0.74!12.27!CREM;;chr15:83953397..83953425,-!p1@BNC1!0.74!5.32!BNC1;;chr19:45971246..45971265,+!p1@FOSB!0.72!89.30!FOSB;;chr11:65687362..65687436,+!p3@DRAP1!0.72!21.44!DRAP1;;chr7:28448965..28448994,+!p2@CREB5!0.72!16.56!CREB5;;chr18:53068911..53068935,-!p4@TCF4!0.72!4.88!TCF4;;chr1:170632647..170632659,+!p17@PRRX1!0.72!4.29!PRRX1;;chr11:34642612..34642646,+!p1@EHF!0.71!4.14!EHF;;chr7:44143925..44143970,+!p1@AEBP1!0.70!102.61!AEBP1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.70!55.74!ZC3H12A;;chr1:221052776..221052799,+!p1@HLX!0.70!7.84!HLX;;chr11:125034605..125034636,+!p2@PKNOX2!0.70!3.99!PKNOX2;;chr6:106534192..106534224,+!p1@PRDM1!0.69!12.12!PRDM1;;chr8:77593750..77593757,+!p3@ZFHX4!0.69!3.84!ZFHX4;;chr19:46801639..46801699,+!p1@HIF3A!0.69!3.84!HIF3A;;chr1:170632115..170632136,+!p9@PRRX1!0.69!3.84!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.68!10.65!TWIST1;;chr19:31840130..31840160,-!p2@TSHZ3!0.68!6.21!TSHZ3;;chr18:19749386..19749404,+!p2@GATA6!0.68!5.77!GATA6;;chr2:66662281..66662308,+!p1@MEIS1!0.67!14.34!MEIS1;;chr2:19558373..19558392,-!p1@OSR1!0.67!11.24!OSR1;;chr8:72755987..72756002,-!p7@MSC!0.67!3.70!MSC;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.65!DRAP1;;chr1:170632477..170632506,+!p6@PRRX1!0.66!3.55!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!0.65!7.24!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.32!HMGA2;;chr15:42749722..42749739,-!p2@ZFP106!0.64!6.51!ZFP106;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.47!IFI16;;chr1:221052840..221052875,+!p4@HLX!0.64!4.14!HLX;;chr14:62162258..62162269,+!p2@HIF1A!0.63!36.82!HIF1A;;chr1:59249688..59249703,-!p3@JUN!0.63!22.77!JUN;;chr8:72756213..72756243,-!p5@MSC!0.63!4.44!MSC;;chr7:28449015..28449024,+!p6@CREB5!0.63!3.25!CREB5;;chr8:25902876..25902936,-!p1@EBF2!0.63!3.25!EBF2;;chr13:45010939..45011033,-!p1@TSC22D1!0.62!248.10!TSC22D1;;chr3:114343768..114343822,-!p1@ZBTB20!0.62!16.26!ZBTB20;;chr2:66662895..66662907,+!p3@MEIS1!0.62!4.14!MEIS1;;chr1:158979792..158979814,+!p2@IFI16!0.61!35.19!IFI16;;chr1:158979872..158979898,+!p3@IFI16!0.61!10.94!IFI16;;chr17:46621937..46621966,-!p2@HOXB2!0.61!9.46!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.61!7.69!HOXB2;;chr2:66662396..66662407,+!p4@MEIS1!0.61!3.10!MEIS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!9.02!ZFPM2;;chr1:151032782..151032801,+!p4@MLLT11!0.60!6.65!MLLT11;;chr21:36260343..36260402,-!p6@RUNX1!0.60!5.17!RUNX1;;chr17:46622205..46622218,-!p3@HOXB2!0.60!3.55!HOXB2;;chr1:170632051..170632081,+!p16@PRRX1!0.60!2.96!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.59!22.03!SNAI2;;chr17:1959369..1959388,+!p2@HIC1!0.59!8.87!HIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.59!7.84!NFATC4;;chr12:80085255..80085284,-!p9@PAWR!0.59!4.58!PAWR;;chr6:144329384..144329405,-!p1@PLAGL1!0.58!39.63!PLAGL1;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.59!HIF1A;;chr7:19157248..19157268,-!p1@TWIST1!0.58!9.02!TWIST1;;chr7:1577899..1577943,+!p3@MAFK!0.58!2.81!MAFK;;chr8:72756380..72756427,-!p8@MSC!0.58!2.81!MSC;;chr4:174451370..174451387,-!p1@HAND2!0.58!2.81!HAND2;;chr7:14029283..14029311,-!p1@ETV1!0.57!17.74!ETV1;;chr18:19749517..19749531,+!p3@GATA6!0.57!5.47!GATA6;;chr10:64134120..64134183,+!p1@ZNF365!0.57!3.40!ZNF365;;chr21:36260295..36260310,-!p3@RUNX1!0.56!4.73!RUNX1;;chr1:170632028..170632043,+!p20@PRRX1!0.56!2.66!PRRX1;;chr10:45495946..45495976,+!p2@ZNF22!0.56!2.66!ZNF22;;chr12:66218904..66218913,+!p11@HMGA2!0.56!2.66!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.66!ZNF668;;chr2:101436564..101436647,+!p1@NPAS2!0.55!65.06!NPAS2;;chr9:14314566..14314618,-!p1@NFIB!0.55!38.15!NFIB;;chr3:141087339..141087387,+!p2@ZBTB38!0.55!32.82!ZBTB38;;chr5:137804484..137804498,+!p2@EGR1!0.55!12.57!EGR1;;chr10:94449703..94449718,+!p1@HHEX!0.55!11.98!HHEX;;chr10:35484804..35484902,+!p2@CREM!0.55!11.83!CREM;;chr19:31840313..31840380,-!p1@TSHZ3!0.55!7.69!TSHZ3;;chr7:28448995..28449011,+!p4@CREB5!0.55!3.84!CREB5;;chr5:174151612..174151633,+!p2@MSX2!0.55!2.51!MSX2;;chr2:102091478..102091490,-!p3@RFX8!0.55!2.51!RFX8;;chr3:193853927..193853944,+!p1@HES1!0.54!101.72!HES1;;chr11:65687158..65687216,+!p4@DRAP1!0.54!17.59!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.54!9.17!TBX2;;chr3:168864315..168864339,-!p2@MECOM!0.54!4.58!MECOM;;chr3:101568349..101568365,+!p1@NFKBIZ!0.53!160.42!NFKBIZ;;chr7:44143978..44143989,+!p2@AEBP1!0.53!5.03!AEBP1;;chr2:192015701..192015743,-!p1@STAT4!0.53!3.55!STAT4;;chr11:125034586..125034604,+!p3@PKNOX2!0.53!2.37!PKNOX2;;chr17:41277372..41277418,-!p1@BRCA1!0.52!10.35!BRCA1;;chr1:151032833..151032850,+!p3@MLLT11!0.52!6.21!MLLT11;;chr1:158979851..158979865,+!p5@IFI16!0.52!6.06!IFI16;;chr12:26277817..26277863,-!p2@BHLHE41!0.52!3.40!BHLHE41;;chr17:46622229..46622257,-!p6@HOXB2!0.52!2.81!HOXB2;;chr17:46655730..46655791,-!p1@HOXB4!0.51!6.65!HOXB4;;chr12:66218573..66218596,+!p7@HMGA2!0.51!3.70!HMGA2;;chr3:168865194..168865245,-!p3@MECOM!0.51!3.10!MECOM;;chr3:141087562..141087594,+!p12@ZBTB38!0.51!2.22!ZBTB38;;chr3:193854202..193854232,+!p2@HES1!0.51!2.22!HES1;;chr5:142780237..142780261,-!p7@NR3C1!0.51!2.22!NR3C1;;chr16:86600426..86600441,+!p1@FOXC2!0.50!6.51!FOXC2;;chr17:46622440..46622477,-!p5@HOXB2!0.50!2.51!HOXB2;;chr9:4300050..4300118,-!p1@GLIS3!0.49!17.74!GLIS3;;chr9:14082760..14082775,-!p6@NFIB!0.49!3.99!NFIB;;chr3:141121847..141121868,+!p5@ZBTB38!0.49!3.55!ZBTB38;;chr2:66662510..66662521,+!p6@MEIS1!0.49!2.07!MEIS1;;chr7:28449026..28449037,+!p8@CREB5!0.49!2.07!CREB5;;chr1:170632439..170632465,+!p11@PRRX1!0.49!2.07!PRRX1;;chr2:66662249..66662267,+!p2@MEIS1!0.48!10.05!MEIS1;;chr14:62203595..62203676,+!p4@HIF1A!0.48!4.44!HIF1A;;chr7:137686763..137686784,-!p5@CREB3L2!0.48!4.14!CREB3L2;;chr1:151032922..151032951,+!p2@MLLT11!0.48!3.84!MLLT11;;chr12:66218378..66218401,+!p6@HMGA2!0.48!3.55!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.48!2.96!TBX2;;chr10:63809106..63809127,+!p1@ARID5B!0.47!36.08!ARID5B;;chr15:57511609..57511651,+!p2@TCF12!0.47!3.84!TCF12;;chr17:41739283..41739297,-!p1@MEOX1!0.47!1.92!MEOX1;;chr1:170633245..170633256,+!p14@PRRX1!0.47!1.92!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.47!1.92!SIM2;;chr5:142780189..142780223,-!p6@NR3C1!0.47!1.92!NR3C1;;chr8:72756251..72756262,-!p12@MSC!0.47!1.92!MSC;;chrY:21906761..21906810,-!p2@KDM5D!0.47!1.92!KDM5D;;chr12:27485762..27485776,+!p3@ARNTL2!0.46!6.36!ARNTL2;;chr6:106534230..106534254,+!p2@PRDM1!0.46!5.91!PRDM1;;chr1:200379104..200379128,-!p2@ZNF281!0.46!5.77!ZNF281;;chr8:106330696..106330719,+!p2@ZFPM2!0.46!2.66!ZFPM2;;chr11:65687222..65687240,+!p7@DRAP1!0.46!2.66!DRAP1;;chr22:38598086..38598105,+!p1@MAFF!0.45!26.76!MAFF;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.45!11.09!TAL1;;chr4:146402843..146402864,+!p3@SMAD1!0.45!4.44!SMAD1;;chr9:16870710..16870763,-!p1@BNC2!0.45!3.70!BNC2;;chr19:31840438..31840470,-!p3@TSHZ3!0.45!2.51!TSHZ3;;chr8:77593474..77593612,+!p1@ZFHX4!0.44!10.05!ZFHX4;;chr5:321810..321877,+!p1@AHRR!0.44!7.39!AHRR;;chr9:14083467..14083483,-!p4@NFIB!0.44!5.47!NFIB;;chr9:14314522..14314556,-!p3@NFIB!0.44!5.17!NFIB;;chr11:6947720..6947812,+!p1@ZNF215!0.44!2.51!ZNF215;;chr12:66218443..66218461,+!p8@HMGA2!0.44!2.51!HMGA2;;chr12:72056773..72056796,+!p3@THAP2!0.44!2.51!THAP2;;chr1:158985469..158985489,+!p7@IFI16!0.44!2.22!IFI16;;chr1:221052994..221053008,+!p6@HLX!0.44!2.22!HLX;;chr5:137804130..137804156,+!p5@EGR1!0.44!1.92!EGR1;;chr19:54058073..54058088,+!p1@ZNF331!0.44!1.77!ZNF331;;chr1:119530493..119530572,-!p1@TBX15!0.44!1.77!TBX15;;chr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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948
+|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000011,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520cardiac%252c%2520donor4.CNhs12371.11755-123G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11755-123G9
 |is_a=EFO:0002091;;FF:0000271
 |is_obsolete=
+|library_id=CNhs12371
+|library_id_phase_based=2:CNhs12371
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11755
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11755
 |name=mesenchymal precursor cell - cardiac, donor4
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12371,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=123
 |rna_catalog_number=
@@ Line 60: / Line 79: @@
 |rna_weight_ug=40.28625
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 81: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11755-123G9;search_select_hide=table117:FF:11755-123G9
 }}

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FF:11755-123G9: Difference between revisions

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Latest revision as of 18:18, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0