FF:11761-123H6: Difference between revisions

Latest revision as of 18:18, 4 June 2020

Name:	mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02)
Species:	Human (Homo sapiens)
Library ID:	CNhs12377
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00006010

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12377		CAGE		DRX008565		DRR009437

Accession ID Hg19

Library id		BAM		CTSS
CNhs12377		DRZ000862		DRZ002247

Accession ID Hg38

Library id		BAM		CTSS
CNhs12377		DRZ012212		DRZ013597

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0676
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.182
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0443
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0825
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.071
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.317
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0624
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0.0443
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.408
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0453
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0845
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0845
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0443
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0845
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.302
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.138
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0845
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0123
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.451
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.54
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.766
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.467
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.00789
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.626
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12377

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.17
MA0003.1	MA0003.1	0.661
MA0004.1	MA0004.1	0.446
MA0006.1	MA0006.1	0.208
MA0007.1	MA0007.1	0.959
MA0009.1	MA0009.1	0.298
MA0014.1	MA0014.1	0.751
MA0017.1	MA0017.1	0.236
MA0018.2	MA0018.2	4.47309e-4
MA0019.1	MA0019.1	0.299
MA0024.1	MA0024.1	1.60661e-6
MA0025.1	MA0025.1	0.652
MA0027.1	MA0027.1	0.722
MA0028.1	MA0028.1	0.124
MA0029.1	MA0029.1	0.144
MA0030.1	MA0030.1	0.456
MA0031.1	MA0031.1	0.34
MA0035.2	MA0035.2	0.843
MA0038.1	MA0038.1	0.19
MA0039.2	MA0039.2	0.803
MA0040.1	MA0040.1	0.425
MA0041.1	MA0041.1	0.5
MA0042.1	MA0042.1	0.662
MA0043.1	MA0043.1	0.426
MA0046.1	MA0046.1	0.0675
MA0047.2	MA0047.2	0.675
MA0048.1	MA0048.1	0.341
MA0050.1	MA0050.1	0.0356
MA0051.1	MA0051.1	0.325
MA0052.1	MA0052.1	0.00286
MA0055.1	MA0055.1	0.24
MA0057.1	MA0057.1	0.437
MA0058.1	MA0058.1	0.553
MA0059.1	MA0059.1	0.84
MA0060.1	MA0060.1	0.00162
MA0061.1	MA0061.1	0.221
MA0062.2	MA0062.2	6.23018e-5
MA0065.2	MA0065.2	0.00772
MA0066.1	MA0066.1	0.728
MA0067.1	MA0067.1	0.175
MA0068.1	MA0068.1	0.959
MA0069.1	MA0069.1	0.37
MA0070.1	MA0070.1	0.402
MA0071.1	MA0071.1	0.11
MA0072.1	MA0072.1	0.228
MA0073.1	MA0073.1	0.883
MA0074.1	MA0074.1	0.362
MA0076.1	MA0076.1	0.00717
MA0077.1	MA0077.1	0.623
MA0078.1	MA0078.1	0.712
MA0079.2	MA0079.2	0.792
MA0080.2	MA0080.2	4.64408e-8
MA0081.1	MA0081.1	0.00178
MA0083.1	MA0083.1	0.0157
MA0084.1	MA0084.1	0.693
MA0087.1	MA0087.1	0.632
MA0088.1	MA0088.1	0.0487
MA0090.1	MA0090.1	0.00314
MA0091.1	MA0091.1	0.601
MA0092.1	MA0092.1	0.998
MA0093.1	MA0093.1	0.862
MA0099.2	MA0099.2	3.28217e-12
MA0100.1	MA0100.1	0.067
MA0101.1	MA0101.1	0.0343
MA0102.2	MA0102.2	0.513
MA0103.1	MA0103.1	0.0403
MA0104.2	MA0104.2	0.0299
MA0105.1	MA0105.1	0.707
MA0106.1	MA0106.1	0.164
MA0107.1	MA0107.1	0.00411
MA0108.2	MA0108.2	0.107
MA0111.1	MA0111.1	0.217
MA0112.2	MA0112.2	0.741
MA0113.1	MA0113.1	0.84
MA0114.1	MA0114.1	0.0525
MA0115.1	MA0115.1	0.158
MA0116.1	MA0116.1	0.223
MA0117.1	MA0117.1	0.94
MA0119.1	MA0119.1	0.67
MA0122.1	MA0122.1	0.429
MA0124.1	MA0124.1	0.0116
MA0125.1	MA0125.1	0.19
MA0131.1	MA0131.1	0.296
MA0135.1	MA0135.1	0.0582
MA0136.1	MA0136.1	1.71941e-8
MA0137.2	MA0137.2	0.778
MA0138.2	MA0138.2	0.394
MA0139.1	MA0139.1	0.685
MA0140.1	MA0140.1	0.677
MA0141.1	MA0141.1	0.0465
MA0142.1	MA0142.1	0.394
MA0143.1	MA0143.1	0.678
MA0144.1	MA0144.1	0.648
MA0145.1	MA0145.1	0.502
MA0146.1	MA0146.1	0.62
MA0147.1	MA0147.1	0.0444
MA0148.1	MA0148.1	0.633
MA0149.1	MA0149.1	0.335
MA0150.1	MA0150.1	0.0404
MA0152.1	MA0152.1	0.0144
MA0153.1	MA0153.1	0.901
MA0154.1	MA0154.1	0.94
MA0155.1	MA0155.1	0.125
MA0156.1	MA0156.1	1.7404e-4
MA0157.1	MA0157.1	0.19
MA0159.1	MA0159.1	0.285
MA0160.1	MA0160.1	0.00802
MA0162.1	MA0162.1	0.0446
MA0163.1	MA0163.1	0.523
MA0164.1	MA0164.1	0.455
MA0258.1	MA0258.1	0.538
MA0259.1	MA0259.1	0.177

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12377

Novel motif	Logo	P-value
1	1	0.238
10	10	0.09
100	100	0.666
101	101	0.529
102	102	0.0946
103	103	0.777
104	104	0.903
105	105	0.453
106	106	0.16
107	107	0.499
108	108	0.673
109	109	0.228
11	11	0.735
110	110	0.341
111	111	0.0408
112	112	0.78
113	113	0.00182
114	114	0.789
115	115	0.339
116	116	0.506
117	117	0.473
118	118	0.791
119	119	0.365
12	12	0.187
120	120	0.15
121	121	0.794
122	122	0.164
123	123	4.9331e-5
124	124	0.116
125	125	0.326
126	126	0.733
127	127	0.773
128	128	0.735
129	129	0.791
13	13	0.694
130	130	0.768
131	131	0.363
132	132	0.549
133	133	0.413
134	134	0.726
135	135	0.348
136	136	0.738
137	137	0.37
138	138	0.937
139	139	0.423
14	14	0.299
140	140	0.73
141	141	0.396
142	142	0.381
143	143	0.795
144	144	0.759
145	145	0.698
146	146	0.917
147	147	0.106
148	148	0.572
149	149	0.466
15	15	0.836
150	150	0.41
151	151	0.639
152	152	0.0321
153	153	0.914
154	154	0.944
155	155	0.00188
156	156	0.163
157	157	0.976
158	158	0.00421
159	159	0.383
16	16	0.126
160	160	0.736
161	161	0.656
162	162	0.84
163	163	0.0437
164	164	0.297
165	165	0.95
166	166	0.484
167	167	0.0791
168	168	0.672
169	169	0.306
17	17	0.945
18	18	0.404
19	19	0.715
2	2	0.352
20	20	0.76
21	21	0.994
22	22	0.942
23	23	0.0459
24	24	0.997
25	25	0.0366
26	26	0.611
27	27	0.993
28	28	0.871
29	29	0.635
3	3	0.556
30	30	0.549
31	31	0.929
32	32	2.89137e-7
33	33	0.876
34	34	0.919
35	35	0.413
36	36	0.0231
37	37	0.147
38	38	0.167
39	39	0.129
4	4	0.11
40	40	0.154
41	41	0.223
42	42	0.267
43	43	0.561
44	44	0.934
45	45	0.949
46	46	0.52
47	47	0.135
48	48	0.59
49	49	0.00856
5	5	0.586
50	50	0.899
51	51	0.847
52	52	0.748
53	53	0.026
54	54	0.904
55	55	0.164
56	56	0.47
57	57	0.456
58	58	0.0765
59	59	0.977
6	6	0.732
60	60	0.838
61	61	0.439
62	62	0.225
63	63	0.881
64	64	0.556
65	65	0.867
66	66	0.416
67	67	0.901
68	68	0.47
69	69	0.176
7	7	0.0665
70	70	0.427
71	71	0.422
72	72	0.213
73	73	0.105
74	74	0.354
75	75	0.742
76	76	0.677
77	77	0.0793
78	78	0.0545
79	79	0.0104
8	8	0.758
80	80	0.73
81	81	0.267
82	82	0.77
83	83	0.824
84	84	0.76
85	85	0.321
86	86	0.937
87	87	0.341
88	88	0.962
89	89	0.724
9	9	0.725
90	90	0.181
91	91	0.871
92	92	0.733
93	93	0.812
94	94	0.927
95	95	0.794
96	96	0.356
97	97	0.221
98	98	6.27279e-4
99	99	0.12

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12377

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000275 human mesenchymal precursor cell- ovarian cancer-right ovary sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002118 (right ovary)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000275 (human mesenchymal precursor cell- ovarian cancer-right ovary sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0001048,UBERON:0006598,UBERON:0003886,UBERON:0004176,UBERON:0002532,UBERON:0002118,UBERON:0003100,UBERON:0000474,UBERON:0004532,UBERON:0009196,UBERON:0009117,UBERON:0006603,UBERON:0005564
+|DRA_sample_Accession=CAGE@SAMD00006010
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255
+|accession_numbers=CAGE;DRX008565;DRR009437;DRZ000862;DRZ002247;DRZ012212;DRZ013597
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000275
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.87!73.90!PAX8;;chr11:61520075..61520136,+!p1@C11orf9!1.75!113.75!C11orf9;;chr15:83953397..83953425,-!p1@BNC1!1.61!45.54!BNC1;;chr8:55370487..55370503,+!p1@SOX17!1.54!33.40!SOX17;;chr21:36260773..36260804,-!p7@RUNX1!1.29!25.03!RUNX1;;chr17:46132044..46132080,+!p4@NFE2L1!1.29!18.69!NFE2L1;;chr19:45971246..45971265,+!p1@FOSB!1.28!328.46!FOSB;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!17.94!ZBED1;;chr11:32457075..32457095,-!p1@WT1!1.21!15.14!WT1;;chr18:19749541..19749557,+!p1@GATA6!1.20!46.40!GATA6;;chr12:26277817..26277863,-!p2@BHLHE41!1.17!18.69!BHLHE41;;chr8:72756637..72756664,-!p3@MSC!1.17!15.79!MSC;;chr7:27183263..27183284,-!p2@HOXA5!1.17!13.75!HOXA5;;chr3:193853927..193853944,+!p1@HES1!1.15!423.09!HES1;;chr11:46299199..46299233,+!p1@CREB3L1!1.11!62.08!CREB3L1;;chr3:5021268..5021282,+!p4@BHLHE40!1.11!24.27!BHLHE40;;chr8:72756267..72756296,-!p4@MSC!1.06!15.36!MSC;;chr8:72756063..72756125,-!p1@MSC!1.05!20.84!MSC;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.29!GATA6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.04!9.88!HOXC5;;chr5:137804484..137804498,+!p2@EGR1!1.03!39.74!EGR1;;chr1:151032860..151032918,+!p1@MLLT11!0.98!104.83!MLLT11;;chr7:27183114..27183138,-!p3@HOXA5!0.98!8.49!HOXA5;;chr7:27183291..27183324,-!p1@HOXA5!0.98!8.49!HOXA5;;chr8:72756667..72756736,-!p2@MSC!0.97!13.21!MSC;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.84!HOXA3;;chr2:157189180..157189290,-!p1@NR4A2!0.92!39.96!NR4A2;;chr17:46622070..46622109,-!p1@HOXB2!0.92!16.97!HOXB2;;chr4:174451370..174451387,-!p1@HAND2!0.92!7.41!HAND2;;chr17:46622114..46622138,-!p4@HOXB2!0.91!11.06!HOXB2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.89!88.40!ZC3H12A;;chr20:48599506..48599526,+!p1@SNAI1!0.89!45.86!SNAI1;;chr8:106330656..106330684,+!p1@ZFPM2!0.89!18.26!ZFPM2;;chr12:26277956..26277980,-!p1@BHLHE41!0.87!24.17!BHLHE41;;chr8:72756213..72756243,-!p5@MSC!0.86!8.27!MSC;;chr7:1577899..1577943,+!p3@MAFK!0.84!5.91!MAFK;;chr6:19837592..19837621,+!p1@ID4!0.83!37.38!ID4;;chr7:26191809..26191890,+!p1@NFE2L3!0.83!30.18!NFE2L3;;chr10:63809106..63809127,+!p1@ARID5B!0.82!81.95!ARID5B;;chr3:5021191..5021202,+!p3@BHLHE40!0.82!15.79!BHLHE40;;chr19:42636586..42636607,-!p1@POU2F2!0.81!16.22!POU2F2;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.45!MLLT11;;chr2:239756671..239756732,+!p1@TWIST2!0.80!18.15!TWIST2;;chr20:50179368..50179392,-!p2@NFATC2!0.80!6.98!NFATC2;;chr7:27183191..27183214,-!p4@HOXA5!0.80!5.26!HOXA5;;chr6:126240380..126240430,+!p2@NCOA7!0.79!14.29!NCOA7;;chr1:170632285..170632309,+!p1@PRRX1!0.79!5.91!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.78!112.78!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.78!34.48!SNAI2;;chr19:16435625..16435682,+!p1@KLF2!0.77!174.97!KLF2;;chr9:102584262..102584276,+!p1@NR4A3!0.77!11.71!NR4A3;;chr12:52445218..52445237,+!p1@NR4A1!0.76!66.49!NR4A1;;chr10:119303078..119303169,+!p2@EMX2!0.75!4.62!EMX2;;chr15:83953373..83953386,-!p2@BNC1!0.75!4.62!BNC1;;chr17:46621937..46621966,-!p2@HOXB2!0.74!13.10!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.77!HOXB7;;chr17:46682321..46682362,-!p1@HOXB6!0.74!4.51!HOXB6;;chr12:54447637..54447659,+!p4@HOXC4!0.74!4.51!HOXC4;;chr7:149470641..149470694,-!p1@ZNF467!0.73!22.13!ZNF467;;chr9:102584159..102584174,+!p2@NR4A3!0.73!8.38!NR4A3;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.27!GATA6;;chr2:239756739..239756755,+!p2@TWIST2!0.73!7.95!TWIST2;;chr8:106330696..106330719,+!p2@ZFPM2!0.73!5.69!ZFPM2;;chr12:54447599..54447630,+!p3@HOXC4!0.73!5.48!HOXC4;;chr6:28321971..28321995,-!p1@ZNF323!0.73!4.40!ZNF323;;chr8:72755987..72756002,-!p7@MSC!0.73!4.40!MSC;;chr1:212782094..212782109,+!p1@ATF3!0.72!129.64!ATF3;;chr12:26277929..26277955,-!p3@BHLHE41!0.72!6.23!BHLHE41;;chr14:75745523..75745537,+!p1@FOS!0.71!563.69!FOS;;chr11:46299539..46299620,+!p2@CREB3L1!0.71!7.52!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!0.69!20.41!HMGA2;;chr21:36421535..36421610,-!p2@RUNX1!0.69!15.57!RUNX1;;chr6:28321909..28321965,-!p3@ZNF323!0.69!3.87!ZNF323;;chr8:11561684..11561751,+!p1@GATA4!0.69!3.87!GATA4;;chr7:27170359..27170381,-!p1@HOXA4!0.68!3.76!HOXA4;;chr18:45663490..45663528,-!p2@ZBTB7C!0.68!3.76!ZBTB7C;;chr17:1958388..1958404,+!p1@HIC1!0.67!27.07!HIC1;;chr10:63809134..63809145,+!p6@ARID5B!0.67!9.45!ARID5B;;chr20:50721803..50721857,-!p2@ZFP64!0.67!6.23!ZFP64;;chr3:25470156..25470227,+!p2@RARB!0.67!3.65!RARB;;chr4:174450089..174450153,-!p2@HAND2!0.67!3.65!HAND2;;chr3:5021113..5021180,+!p1@BHLHE40!0.66!290.76!BHLHE40;;chr17:46655704..46655718,-!p2@HOXB4!0.65!5.59!HOXB4;;chr14:75746722..75746777,+!p2@FOS!0.65!4.62!FOS;;chr16:86544113..86544145,+!p1@FOXF1!0.65!4.51!FOXF1;;chr11:32457103..32457123,-!p3@WT1!0.65!3.44!WT1;;chr3:193854202..193854232,+!p2@HES1!0.65!3.44!HES1;;chr19:54058073..54058088,+!p1@ZNF331!0.65!3.44!ZNF331;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.94!HOXB7;;chr20:61051039..61051057,-!p1@GATA5!0.64!3.33!GATA5;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.98!HIF1A;;chr1:151032782..151032801,+!p4@MLLT11!0.63!7.30!MLLT11;;chr9:102584241..1025842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+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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@@ Line 44: / Line 60: @@
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 |sample_cell_line=
@@ Line 80: / Line 100: @@
 |top_motifs=NKX3-1:2.05983490507;HOX{A5,B5}:1.58606512693;HIF1A:1.50666156921;GZF1:1.41433368728;HSF1,2:1.37076750346;GLI1..3:1.27597892432;TAL1_TCF{3,4,12}:1.0938782662;RXRA_VDR{dimer}:1.02355135031;AIRE:1.00179438387;PAX4:0.938982465782;bHLH_family:0.89974520256;UFEwm:0.898755792166;ATF6:0.894956009515;MAFB:0.892707174104;ONECUT1,2:0.880885753528;NFATC1..3:0.87670749698;EVI1:0.867714669723;ALX4:0.846199202749;TBX4,5:0.80263756004;EBF1:0.79945794303;HMGA1,2:0.786710498759;TFCP2:0.769459718709;TEAD1:0.735189866607;EN1,2:0.715991577764;NFE2L2:0.705175314324;XCPE1{core}:0.695909347408;TLX1..3_NFIC{dimer}:0.667934623254;ZNF238:0.667803395295;ZIC1..3:0.66445284597;SPZ1:0.655058894534;HOX{A4,D4}:0.647144257472;ZNF148:0.623071788512;NANOG{mouse}:0.612111925143;MAZ:0.598834002432;NKX2-1,4:0.590422015415;CRX:0.572509974768;CDC5L:0.565829363734;PRDM1:0.558236539507;MYBL2:0.557143864383;HBP1_HMGB_SSRP1_UBTF:0.527686969392;FOX{I1,J2}:0.525176655512;ZNF384:0.500761646649;BACH2:0.496898446405;MZF1:0.496804773553;NR6A1:0.493856973596;GTF2I:0.477099723596;NFIX:0.462273323946;IKZF1:0.460446447749;PAX1,9:0.440750207996;ZBTB16:0.436333225518;EP300:0.435548636033;TEF:0.424157815483;SRF:0.417552660995;TBP:0.410319133294;TP53:0.40432680729;NFE2L1:0.404202452622;SMAD1..7,9:0.402054653672;FOS_FOS{B,L1}_JUN{B,D}:0.400695846467;PAX8:0.399880227738;HMX1:0.393213651296;ZBTB6:0.377490475599;KLF4:0.376287178078;PAX5:0.370065321268;SOX2:0.369677613244;PAX2:0.364337389456;ESR1:0.363229776587;HLF:0.354232250357;FOSL2:0.347766907885;NFE2:0.332256812132;SP1:0.330351065305;XBP1:0.327932947727;GTF2A1,2:0.312488146231;RXR{A,B,G}:0.307828075458;DBP:0.300079332182;SOX17:0.285300405549;HOXA9_MEIS1:0.269140801762;PATZ1:0.256455140892;AR:0.255056268297;GFI1B:0.240641092915;TLX2:0.236356676639;RREB1:0.221906795318;HES1:0.21683071392;NR3C1:0.203265062501;NFKB1_REL_RELA:0.196579893535;STAT2,4,6:0.181873429075;GCM1,2:0.175422050917;AHR_ARNT_ARNT2:0.175182365295;ZNF423:0.157437880175;CEBPA,B_DDIT3:0.155189225033;TFAP2B:0.15410300408;GATA4:0.152273029613;MTE{core}:0.143361900249;RFX1:0.143105191672;POU6F1:0.122430485272;REST:0.112895751168;NHLH1,2:0.102935845444;NKX3-2:0.0940281178519;FOXD3:0.0926542235069;EGR1..3:0.0874433297114;CDX1,2,4:0.0819459134014;RUNX1..3:0.0779408803912;TFAP2{A,C}:0.0737207448415;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0632479277815;ALX1:0.0414061416441;LEF1_TCF7_TCF7L1,2:0.0328684357371;POU3F1..4:0.0318910282347;LHX3,4:0.0174190725071;NKX2-2,8:0.00822571573369;FOXM1:0.00685855790127;FOXQ1:0.00201722719764;SREBF1,2:-0.00710842506005;STAT5{A,B}:-0.00748005211093;ZFP161:-0.0167261177692;HNF1A:-0.0312000510335;HIC1:-0.0394596059812;ELK1,4_GABP{A,B1}:-0.0446350243558;ATF5_CREB3:-0.048992361258;POU5F1:-0.058947510173;LMO2:-0.066843831089;NR1H4:-0.0841111601571;NFIL3:-0.101902978828;MTF1:-0.107680707101;IRF7:-0.135017589975;ATF2:-0.136388425344;TFAP4:-0.139054140597;PAX6:-0.141459186292;MYFfamily:-0.145882415157;ARID5B:-0.157915625112;PPARG:-0.159594630493;CREB1:-0.168043947433;IRF1,2:-0.169042384411;NRF1:-0.204350904052;JUN:-0.214688069354;TOPORS:-0.223941169599;GATA6:-0.23306650337;ADNP_IRX_SIX_ZHX:-0.236061697886;DMAP1_NCOR{1,2}_SMARC:-0.248983503665;PBX1:-0.249225434458;ZEB1:-0.263868765992;ATF4:-0.275199706491;MED-1{core}:-0.286657961364;NFY{A,B,C}:-0.290288365533;POU1F1:-0.300111880384;ZNF143:-0.304429165303;PRRX1,2:-0.310652579365;BPTF:-0.314922794923;ETS1,2:-0.318018243458;HNF4A_NR2F1,2:-0.324930045603;NKX6-1,2:-0.351484463421;STAT1,3:-0.353488030707;FOXO1,3,4:-0.368193378863;FOX{D1,D2}:-0.372035929229;SPI1:-0.376931817751;PAX3,7:-0.378579207599;SNAI1..3:-0.393189884447;GFI1:-0.402389385348;IKZF2:-0.4155418014;TFDP1:-0.426101786392;FOXN1:-0.445459170156;ELF1,2,4:-0.450387867936;RBPJ:-0.471768830176;POU2F1..3:-0.48309784967;FOXL1:-0.484763834446;FOXP3:-0.49116213951;MYOD1:-0.501767748322;MEF2{A,B,C,D}:-0.523682136657;FOXP1:-0.538227753669;OCT4_SOX2{dimer}:-0.548585842582;YY1:-0.576956626494;TGIF1:-0.59868857244;SOX{8,9,10}:-0.615268673228;CUX2:-0.619615322318;HAND1,2:-0.621239302378;E2F1..5:-0.639320728904;FOXA2:-0.654891724934;SOX5:-0.656079060926;SPIB:-0.66125846662;T:-0.691551607906;MYB:-0.697007038002;RFX2..5_RFXANK_RFXAP:-0.720754107483;NKX2-3_NKX2-5:-0.818389131744;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.863483063632;ESRRA:-0.872271545698;RORA:-0.934111139065;NR5A1,2:-0.995519239393;BREu{core}:-1.0777301698;FOX{F1,F2,J1}:-1.08038560535;PDX1:-1.1268036819;NANOG:-1.18778875611;PITX1..3:-1.21997652358;HOX{A6,A7,B6,B7}:-1.49892934432;VSX1,2:-1.60229601381
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11761-123H6;search_select_hide=table117:FF:11761-123H6
 }}

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FF:11761-123H6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:18, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0