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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0000043,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00005903
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000499,CL:0000630,CL:0000004,CL:0000134,CL:0000135,CL:0000386,CL:0000255,CL:0000057,CL:0000388
|accession_numbers=CAGE;DRX008578;DRR009450;DRZ000875;DRZ002260;DRZ012225;DRZ013610
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000280
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr7:15726296..15726315,-!p1@MEOX2!1.85!69.65!MEOX2;;chr2:19558373..19558392,-!p1@OSR1!1.80!163.10!OSR1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.73!53.21!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.67!45.43!PRRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.62!125.03!TWIST2;;chr10:28034739..28034756,-!p1@MKX!1.60!38.50!MKX;;chr11:46299199..46299233,+!p1@CREB3L1!1.56!173.48!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.49!38.94!PRRX2;;chr19:13134772..13134822,+!p2@NFIX!1.48!41.96!NFIX;;chr2:45236540..45236577,-!p1@SIX2!1.48!29.42!SIX2;;chr1:170632285..170632309,+!p1@PRRX1!1.47!32.01!PRRX1;;chr7:15726243..15726293,-!p2@MEOX2!1.44!26.82!MEOX2;;chr2:239756739..239756755,+!p2@TWIST2!1.39!39.37!TWIST2;;chr8:25902876..25902936,-!p1@EBF2!1.38!22.93!EBF2;;chr12:54402745..54402788,+!p1@HOXC8!1.37!22.50!HOXC8;;chr10:131762504..131762555,-!p1@EBF3!1.35!21.20!EBF3;;chr7:19157248..19157268,-!p1@TWIST1!1.34!57.11!TWIST1;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.15!CREB3L1;;chr12:53614115..53614154,-!p1@RARG!1.25!88.26!RARG;;chr1:170633058..170633084,+!p5@PRRX1!1.21!15.14!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.19!25.09!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!1.18!15.57!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.28!HOXC9;;chr14:24837368..24837401,+!p1@NFATC4!1.17!32.01!NFATC4;;chr12:54380404..54380433,+!p3@HOXC10!1.17!13.84!HOXC10;;chr5:158526917..158526932,-!p1@EBF1!1.15!32.45!EBF1;;chr6:85474299..85474324,-!p1@TBX18!1.15!23.36!TBX18;;chr14:61116183..61116208,-!p1@SIX1!1.12!46.72!SIX1;;chr1:170633348..170633399,+!p2@PRRX1!1.12!16.44!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.08!244.43!AEBP1;;chr7:19157043..19157088,-!p2@TWIST1!1.06!26.39!TWIST1;;chr1:170633262..170633285,+!p3@PRRX1!1.05!11.68!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!1.04!18.60!AEBP1;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.09!HIC1;;chr1:170632723..170632739,+!p8@PRRX1!1.02!9.52!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.52!HOXC5;;chr7:15726220..15726236,-!p4@MEOX2!1.02!9.52!MEOX2;;chr11:46333934..46333963,+!p5@CREB3L1!1.00!9.09!CREB3L1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.97!85.66!GLIS2;;chr2:176994408..176994492,+!p1@HOXD8!0.96!8.22!HOXD8;;chr2:45236579..45236596,-!p2@SIX2!0.96!8.22!SIX2;;chr3:42695180..42695201,+!p2@ZBTB47!0.96!8.22!ZBTB47;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.61!DRAP1;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.41!TCF12;;chr4:174451370..174451387,-!p1@HAND2!0.94!7.79!HAND2;;chr1:170632250..170632277,+!p7@PRRX1!0.94!7.79!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!0.94!7.79!HOXC10;;chr7:15726206..15726217,-!p6@MEOX2!0.94!7.79!MEOX2;;chr8:49833948..49833973,-!p2@SNAI2!0.93!49.75!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!0.92!156.61!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.92!24.23!AHRR;;chr3:157823517..157823562,-!p1@SHOX2!0.92!7.79!SHOX2;;chr7:15725757..15725828,-!p5@MEOX2!0.92!7.35!MEOX2;;chr7:27213893..27213954,-!p1@HOXA10!0.92!7.35!HOXA10;;chr12:54379029..54379057,+!p2@HOXC10!0.92!7.35!HOXC10;;chr5:134369905..134369972,-!p1@PITX1!0.90!10.82!PITX1;;chr1:44513995..44514031,+!p1@KLF17!0.90!6.92!KLF17;;chr5:139487608..139487663,+!p3@PURA!0.89!15.14!PURA;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.11!ZFP106;;chr7:15726176..15726191,-!p3@MEOX2!0.87!6.49!MEOX2;;chr2:177053386..177053402,+!p1@HOXD1!0.87!6.49!HOXD1;;chr6:144329384..144329405,-!p1@PLAGL1!0.86!77.01!PLAGL1;;chr1:170632762..170632786,+!p13@PRRX1!0.85!6.06!PRRX1;;chr10:31610110..31610159,+!p2@ZEB1!0.85!6.06!ZEB1;;chr12:54410948..54410992,+!p3@HOXC5!0.85!6.06!HOXC5;;chr19:13106214..13106382,+!p1@NFIX!0.84!146.23!NFIX;;chr19:13136241..13136258,+!p7@NFIX!0.84!8.22!NFIX;;chr1:23694556..23694584,-!p6@ZNF436!0.84!7.79!ZNF436;;chr9:110252035..110252057,-!p1@KLF4!0.83!99.07!KLF4;;chr20:51588873..51588953,+!p1@TSHZ2!0.83!7.79!TSHZ2;;chr10:31607811..31607837,+!p6@ZEB1!0.82!5.62!ZEB1;;chr4:174450089..174450153,-!p2@HAND2!0.82!5.62!HAND2;;chr19:13135582..13135600,+!p3@NFIX!0.82!5.62!NFIX;;chr10:31607702..31607755,+!p3@ZEB1!0.81!6.49!ZEB1;;chr11:46299186..46299195,+!p3@CREB3L1!0.80!6.06!CREB3L1;;chr5:133450365..133450444,+!p1@TCF7!0.79!25.52!TCF7;;chr18:51750414..51750449,-!p5@MBD2!0.79!10.38!MBD2;;chr7:27224842..27224872,-!p1@HOXA11!0.79!5.19!HOXA11;;chr2:119604456..119604501,-!p2@EN1!0.79!5.19!EN1;;chr11:65687362..65687436,+!p3@DRAP1!0.78!25.09!DRAP1;;chr6:144289132..144289134,-!p3@PLAGL1!0.77!12.11!PLAGL1;;chr19:13134457..13134462,+!p5@NFIX!0.77!9.09!NFIX;;chr1:170633100..170633112,+!p19@PRRX1!0.76!4.76!PRRX1;;chr11:46333979..46333991,+!p7@CREB3L1!0.76!4.76!CREB3L1;;chr12:54447637..54447659,+!p4@HOXC4!0.76!4.76!HOXC4;;chr2:119605214..119605230,-!p1@EN1!0.76!4.76!EN1;;chr2:177001290..177001315,+!p1@HOXD3!0.76!4.76!HOXD3;;chr1:221052840..221052875,+!p4@HLX!0.75!5.62!HLX;;chr19:13136130..13136165,+!p6@NFIX!0.73!6.06!NFIX;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.33!NPAS1;;chr1:170632137..170632172,+!p10@PRRX1!0.73!4.33!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.33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|expression_enrichment_score=chr7:15726296..15726315,-!p1@MEOX2!1.85!69.65!MEOX2;;chr2:19558373..19558392,-!p1@OSR1!1.80!163.10!OSR1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.73!53.21!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.67!45.43!PRRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.62!125.03!TWIST2;;chr10:28034739..28034756,-!p1@MKX!1.60!38.50!MKX;;chr11:46299199..46299233,+!p1@CREB3L1!1.56!173.48!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.49!38.94!PRRX2;;chr19:13134772..13134822,+!p2@NFIX!1.48!41.96!NFIX;;chr2:45236540..45236577,-!p1@SIX2!1.48!29.42!SIX2;;chr1:170632285..170632309,+!p1@PRRX1!1.47!32.01!PRRX1;;chr7:15726243..15726293,-!p2@MEOX2!1.44!26.82!MEOX2;;chr2:239756739..239756755,+!p2@TWIST2!1.39!39.37!TWIST2;;chr8:25902876..25902936,-!p1@EBF2!1.38!22.93!EBF2;;chr12:54402745..54402788,+!p1@HOXC8!1.37!22.50!HOXC8;;chr10:131762504..131762555,-!p1@EBF3!1.35!21.20!EBF3;;chr7:19157248..19157268,-!p1@TWIST1!1.34!57.11!TWIST1;;chr11:46299539..46299620,+!p2@CREB3L1!1.29!31.15!CREB3L1;;chr12:53614115..53614154,-!p1@RARG!1.25!88.26!RARG;;chr1:170633058..170633084,+!p5@PRRX1!1.21!15.14!PRRX1;;chr11:65686802..65686818,+!p6@DRAP1!1.19!25.09!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!1.18!15.57!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!1.18!14.28!HOXC9;;chr14:24837368..24837401,+!p1@NFATC4!1.17!32.01!NFATC4;;chr12:54380404..54380433,+!p3@HOXC10!1.17!13.84!HOXC10;;chr5:158526917..158526932,-!p1@EBF1!1.15!32.45!EBF1;;chr6:85474299..85474324,-!p1@TBX18!1.15!23.36!TBX18;;chr14:61116183..61116208,-!p1@SIX1!1.12!46.72!SIX1;;chr1:170633348..170633399,+!p2@PRRX1!1.12!16.44!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.08!244.43!AEBP1;;chr7:19157043..19157088,-!p2@TWIST1!1.06!26.39!TWIST1;;chr1:170633262..170633285,+!p3@PRRX1!1.05!11.68!PRRX1;;chr7:44143978..44143989,+!p2@AEBP1!1.04!18.60!AEBP1;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.09!HIC1;;chr1:170632723..170632739,+!p8@PRRX1!1.02!9.52!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.02!9.52!HOXC5;;chr7:15726220..15726236,-!p4@MEOX2!1.02!9.52!MEOX2;;chr11:46333934..46333963,+!p5@CREB3L1!1.00!9.09!CREB3L1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.97!85.66!GLIS2;;chr2:176994408..176994492,+!p1@HOXD8!0.96!8.22!HOXD8;;chr2:45236579..45236596,-!p2@SIX2!0.96!8.22!SIX2;;chr3:42695180..42695201,+!p2@ZBTB47!0.96!8.22!ZBTB47;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.61!DRAP1;;chr15:57511609..57511651,+!p2@TCF12!0.95!13.41!TCF12;;chr4:174451370..174451387,-!p1@HAND2!0.94!7.79!HAND2;;chr1:170632250..170632277,+!p7@PRRX1!0.94!7.79!PRRX1;;chr12:54378923..54378966,+!p1@HOXC10!0.94!7.79!HOXC10;;chr7:15726206..15726217,-!p6@MEOX2!0.94!7.79!MEOX2;;chr8:49833948..49833973,-!p2@SNAI2!0.93!49.75!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!0.92!156.61!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.92!24.23!AHRR;;chr3:157823517..157823562,-!p1@SHOX2!0.92!7.79!SHOX2;;chr7:15725757..15725828,-!p5@MEOX2!0.92!7.35!MEOX2;;chr7:27213893..27213954,-!p1@HOXA10!0.92!7.35!HOXA10;;chr12:54379029..54379057,+!p2@HOXC10!0.92!7.35!HOXC10;;chr5:134369905..134369972,-!p1@PITX1!0.90!10.82!PITX1;;chr1:44513995..44514031,+!p1@KLF17!0.90!6.92!KLF17;;chr5:139487608..139487663,+!p3@PURA!0.89!15.14!PURA;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.11!ZFP106;;chr7:15726176..15726191,-!p3@MEOX2!0.87!6.49!MEOX2;;chr2:177053386..177053402,+!p1@HOXD1!0.87!6.49!HOXD1;;chr6:144329384..144329405,-!p1@PLAGL1!0.86!77.01!PLAGL1;;chr1:170632762..170632786,+!p13@PRRX1!0.85!6.06!PRRX1;;chr10:31610110..31610159,+!p2@ZEB1!0.85!6.06!ZEB1;;chr12:54410948..54410992,+!p3@HOXC5!0.85!6.06!HOXC5;;chr19:13106214..13106382,+!p1@NFIX!0.84!146.23!NFIX;;chr19:13136241..13136258,+!p7@NFIX!0.84!8.22!NFIX;;chr1:23694556..23694584,-!p6@ZNF436!0.84!7.79!ZNF436;;chr9:110252035..110252057,-!p1@KLF4!0.83!99.07!KLF4;;chr20:51588873..51588953,+!p1@TSHZ2!0.83!7.79!TSHZ2;;chr10:31607811..31607837,+!p6@ZEB1!0.82!5.62!ZEB1;;chr4:174450089..174450153,-!p2@HAND2!0.82!5.62!HAND2;;chr19:13135582..13135600,+!p3@NFIX!0.82!5.62!NFIX;;chr10:31607702..31607755,+!p3@ZEB1!0.81!6.49!ZEB1;;chr11:46299186..46299195,+!p3@CREB3L1!0.80!6.06!CREB3L1;;chr5:133450365..133450444,+!p1@TCF7!0.79!25.52!TCF7;;chr18:51750414..51750449,-!p5@MBD2!0.79!10.38!MBD2;;chr7:27224842..27224872,-!p1@HOXA11!0.79!5.19!HOXA11;;chr2:119604456..119604501,-!p2@EN1!0.79!5.19!EN1;;chr11:65687362..65687436,+!p3@DRAP1!0.78!25.09!DRAP1;;chr6:144289132..144289134,-!p3@PLAGL1!0.77!12.11!PLAGL1;;chr19:13134457..13134462,+!p5@NFIX!0.77!9.09!NFIX;;chr1:170633100..170633112,+!p19@PRRX1!0.76!4.76!PRRX1;;chr11:46333979..46333991,+!p7@CREB3L1!0.76!4.76!CREB3L1;;chr12:54447637..54447659,+!p4@HOXC4!0.76!4.76!HOXC4;;chr2:119605214..119605230,-!p1@EN1!0.76!4.76!EN1;;chr2:177001290..177001315,+!p1@HOXD3!0.76!4.76!HOXD3;;chr1:221052840..221052875,+!p4@HLX!0.75!5.62!HLX;;chr19:13136130..13136165,+!p6@NFIX!0.73!6.06!NFIX;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.33!NPAS1;;chr1:170632137..170632172,+!p10@PRRX1!0.73!4.33!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.33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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000388;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 36: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg38.nobarcode.ctss.bed.gz
|id=FF:11768-123I4
|id=FF:11768-123I4
|is_a=EFO:0002091;;FF:0000280
|is_a=EFO:0002091;;FF:0000280
|is_obsolete=
|is_obsolete=
|library_id=CNhs12641
|library_id_phase_based=2:CNhs12641
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11768
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11768
|name=tenocyte, donor3
|name=tenocyte, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 44: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12641,LSID952,release012,COMPLETED
|profile_hcage=CNhs12641,LSID952,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 59: Line 79:
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Line 80: Line 101:
|top_motifs=TAL1_TCF{3,4,12}:2.7966823232;ESR1:2.50940710469;UFEwm:2.49820305039;ALX4:2.31274477025;NKX2-2,8:2.24117549756;EVI1:1.94413707931;HES1:1.86973670703;KLF4:1.80526835151;NR3C1:1.79745510588;GLI1..3:1.79601045201;HOX{A4,D4}:1.6573335967;IKZF1:1.65200806319;FOXL1:1.60006050414;PAX1,9:1.55549326071;RXRA_VDR{dimer}:1.54454514796;EN1,2:1.4650952607;NKX3-1:1.45123186776;ATF6:1.44533892229;MYBL2:1.43026255929;HMGA1,2:1.40224502981;GZF1:1.37394395848;AIRE:1.34259244748;ZNF384:1.33539250967;ZNF238:1.3351312895;NKX3-2:1.30776124933;TP53:1.28589034349;RXR{A,B,G}:1.28149245235;SPZ1:1.1659584255;GCM1,2:1.12914123658;NR6A1:1.11542145516;TFAP4:1.10562830308;TEAD1:1.06975274251;HAND1,2:1.06192213444;NKX2-1,4:1.0443262304;HSF1,2:1.04175265353;NFE2L1:1.04118664025;ZNF423:1.0252408926;FOXO1,3,4:1.02068106276;EBF1:0.98624616765;XBP1:0.982534307494;GATA4:0.965887395997;ZIC1..3:0.939615246654;CDC5L:0.936392973096;HOX{A5,B5}:0.93333365025;TFCP2:0.89051550422;VSX1,2:0.835217173064;ZNF148:0.780790501846;PAX5:0.769422632526;SMAD1..7,9:0.755597656323;NR1H4:0.729100335881;GFI1B:0.725123732774;NANOG{mouse}:0.691777072566;FOXM1:0.690702526141;MAFB:0.653760749909;TBP:0.617194379727;HMX1:0.585314845215;GTF2I:0.581302796923;XCPE1{core}:0.577368741935;POU3F1..4:0.563504228819;TLX1..3_NFIC{dimer}:0.555635068094;PRDM1:0.537147039162;YY1:0.534211325409;LHX3,4:0.486299471528;TEF:0.453953349638;RREB1:0.446387810934;SRF:0.42449580127;HIC1:0.399252617026;HOX{A6,A7,B6,B7}:0.394209151951;GTF2A1,2:0.361787576084;ZBTB6:0.359141151773;MYB:0.350895631398;MTE{core}:0.34365917646;TFAP2B:0.330932486016;FOXD3:0.326181989918;NFATC1..3:0.323754689643;DBP:0.309159613176;TFAP2{A,C}:0.285541822964;EP300:0.277633606918;HLF:0.277598303097;GFI1:0.276929988215;STAT2,4,6:0.264769030061;NFE2L2:0.250883515219;ZBTB16:0.233904074673;ARID5B:0.219749603507;POU6F1:0.212458525755;MZF1:0.205453542124;MAZ:0.177092546232;SOX17:0.170371971512;PAX4:0.166056003702;FOX{I1,J2}:0.142821462788;MYFfamily:0.125585580698;IRF1,2:0.0874334985248;PDX1:0.0687957911586;PATZ1:0.0671506320128;BACH2:0.00317672935144;POU5F1:-0.00541583088523;LEF1_TCF7_TCF7L1,2:-0.0259452775011;MTF1:-0.0615509959759;HBP1_HMGB_SSRP1_UBTF:-0.0641641494194;REST:-0.102688145962;LMO2:-0.114373956888;STAT1,3:-0.121032292573;RUNX1..3:-0.127987631999;T:-0.139522818129;AR:-0.151107381291;HOXA9_MEIS1:-0.15154186409;NFIX:-0.15543237516;HNF1A:-0.159200374361;NKX2-3_NKX2-5:-0.161530473334;FOS_FOS{B,L1}_JUN{B,D}:-0.177986086084;MED-1{core}:-0.206472168017;DMAP1_NCOR{1,2}_SMARC:-0.224661984614;ZNF143:-0.248667635275;NHLH1,2:-0.27277689441;NRF1:-0.281893537082;HIF1A:-0.285209512971;MEF2{A,B,C,D}:-0.293669171911;TBX4,5:-0.301625516988;bHLH_family:-0.302106164968;NKX6-1,2:-0.314618827138;RFX1:-0.337540442541;HNF4A_NR2F1,2:-0.33958837227;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.34203638233;TOPORS:-0.351256609285;POU1F1:-0.354247314369;PAX3,7:-0.367104125597;PAX8:-0.384050052068;BPTF:-0.399199795435;ELK1,4_GABP{A,B1}:-0.416400096092;PPARG:-0.430895189788;FOSL2:-0.433328378952;EGR1..3:-0.440994114094;E2F1..5:-0.470165245146;AHR_ARNT_ARNT2:-0.48745567439;SP1:-0.493325998921;SNAI1..3:-0.531375875391;NFIL3:-0.535737725552;CDX1,2,4:-0.546896778311;NFKB1_REL_RELA:-0.54870456978;PITX1..3:-0.559126385673;FOXP3:-0.598728787313;NR5A1,2:-0.613514107763;STAT5{A,B}:-0.613594030954;CREB1:-0.617473372441;TLX2:-0.621512769726;SPI1:-0.654034840685;NFE2:-0.676522388177;ZFP161:-0.68966112565;IKZF2:-0.690936342442;ALX1:-0.694745310028;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.702084914395;ADNP_IRX_SIX_ZHX:-0.725675358017;SOX5:-0.728486093871;PAX2:-0.730801659752;ETS1,2:-0.75568119394;TFDP1:-0.763376578733;IRF7:-0.763815741633;FOX{D1,D2}:-0.764535510023;FOXP1:-0.780808498507;SPIB:-0.787089030321;ONECUT1,2:-0.796778229917;TGIF1:-0.816011925335;BREu{core}:-0.839537748434;FOXA2:-0.853770481052;CEBPA,B_DDIT3:-0.867728491395;ESRRA:-0.882503843775;PBX1:-0.969316052662;OCT4_SOX2{dimer}:-0.975828996889;ELF1,2,4:-0.983599848737;ZEB1:-1.00058047336;FOXN1:-1.00827799924;PRRX1,2:-1.01719578241;PAX6:-1.03641120147;SOX{8,9,10}:-1.04797356621;JUN:-1.06720538219;CUX2:-1.12616730568;SREBF1,2:-1.13141856573;NFY{A,B,C}:-1.14066158233;ATF2:-1.14549536082;ATF4:-1.15944073049;GATA6:-1.19183494383;RFX2..5_RFXANK_RFXAP:-1.20573729178;ATF5_CREB3:-1.21483443468;RBPJ:-1.30205343325;MYOD1:-1.32328283788;FOX{F1,F2,J1}:-1.35016998111;RORA:-1.6107463171;SOX2:-1.65213582478;CRX:-1.71258419241;FOXQ1:-1.74337852528;POU2F1..3:-1.75269721579;NANOG:-2.22013055283
|top_motifs=TAL1_TCF{3,4,12}:2.7966823232;ESR1:2.50940710469;UFEwm:2.49820305039;ALX4:2.31274477025;NKX2-2,8:2.24117549756;EVI1:1.94413707931;HES1:1.86973670703;KLF4:1.80526835151;NR3C1:1.79745510588;GLI1..3:1.79601045201;HOX{A4,D4}:1.6573335967;IKZF1:1.65200806319;FOXL1:1.60006050414;PAX1,9:1.55549326071;RXRA_VDR{dimer}:1.54454514796;EN1,2:1.4650952607;NKX3-1:1.45123186776;ATF6:1.44533892229;MYBL2:1.43026255929;HMGA1,2:1.40224502981;GZF1:1.37394395848;AIRE:1.34259244748;ZNF384:1.33539250967;ZNF238:1.3351312895;NKX3-2:1.30776124933;TP53:1.28589034349;RXR{A,B,G}:1.28149245235;SPZ1:1.1659584255;GCM1,2:1.12914123658;NR6A1:1.11542145516;TFAP4:1.10562830308;TEAD1:1.06975274251;HAND1,2:1.06192213444;NKX2-1,4:1.0443262304;HSF1,2:1.04175265353;NFE2L1:1.04118664025;ZNF423:1.0252408926;FOXO1,3,4:1.02068106276;EBF1:0.98624616765;XBP1:0.982534307494;GATA4:0.965887395997;ZIC1..3:0.939615246654;CDC5L:0.936392973096;HOX{A5,B5}:0.93333365025;TFCP2:0.89051550422;VSX1,2:0.835217173064;ZNF148:0.780790501846;PAX5:0.769422632526;SMAD1..7,9:0.755597656323;NR1H4:0.729100335881;GFI1B:0.725123732774;NANOG{mouse}:0.691777072566;FOXM1:0.690702526141;MAFB:0.653760749909;TBP:0.617194379727;HMX1:0.585314845215;GTF2I:0.581302796923;XCPE1{core}:0.577368741935;POU3F1..4:0.563504228819;TLX1..3_NFIC{dimer}:0.555635068094;PRDM1:0.537147039162;YY1:0.534211325409;LHX3,4:0.486299471528;TEF:0.453953349638;RREB1:0.446387810934;SRF:0.42449580127;HIC1:0.399252617026;HOX{A6,A7,B6,B7}:0.394209151951;GTF2A1,2:0.361787576084;ZBTB6:0.359141151773;MYB:0.350895631398;MTE{core}:0.34365917646;TFAP2B:0.330932486016;FOXD3:0.326181989918;NFATC1..3:0.323754689643;DBP:0.309159613176;TFAP2{A,C}:0.285541822964;EP300:0.277633606918;HLF:0.277598303097;GFI1:0.276929988215;STAT2,4,6:0.264769030061;NFE2L2:0.250883515219;ZBTB16:0.233904074673;ARID5B:0.219749603507;POU6F1:0.212458525755;MZF1:0.205453542124;MAZ:0.177092546232;SOX17:0.170371971512;PAX4:0.166056003702;FOX{I1,J2}:0.142821462788;MYFfamily:0.125585580698;IRF1,2:0.0874334985248;PDX1:0.0687957911586;PATZ1:0.0671506320128;BACH2:0.00317672935144;POU5F1:-0.00541583088523;LEF1_TCF7_TCF7L1,2:-0.0259452775011;MTF1:-0.0615509959759;HBP1_HMGB_SSRP1_UBTF:-0.0641641494194;REST:-0.102688145962;LMO2:-0.114373956888;STAT1,3:-0.121032292573;RUNX1..3:-0.127987631999;T:-0.139522818129;AR:-0.151107381291;HOXA9_MEIS1:-0.15154186409;NFIX:-0.15543237516;HNF1A:-0.159200374361;NKX2-3_NKX2-5:-0.161530473334;FOS_FOS{B,L1}_JUN{B,D}:-0.177986086084;MED-1{core}:-0.206472168017;DMAP1_NCOR{1,2}_SMARC:-0.224661984614;ZNF143:-0.248667635275;NHLH1,2:-0.27277689441;NRF1:-0.281893537082;HIF1A:-0.285209512971;MEF2{A,B,C,D}:-0.293669171911;TBX4,5:-0.301625516988;bHLH_family:-0.302106164968;NKX6-1,2:-0.314618827138;RFX1:-0.337540442541;HNF4A_NR2F1,2:-0.33958837227;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.34203638233;TOPORS:-0.351256609285;POU1F1:-0.354247314369;PAX3,7:-0.367104125597;PAX8:-0.384050052068;BPTF:-0.399199795435;ELK1,4_GABP{A,B1}:-0.416400096092;PPARG:-0.430895189788;FOSL2:-0.433328378952;EGR1..3:-0.440994114094;E2F1..5:-0.470165245146;AHR_ARNT_ARNT2:-0.48745567439;SP1:-0.493325998921;SNAI1..3:-0.531375875391;NFIL3:-0.535737725552;CDX1,2,4:-0.546896778311;NFKB1_REL_RELA:-0.54870456978;PITX1..3:-0.559126385673;FOXP3:-0.598728787313;NR5A1,2:-0.613514107763;STAT5{A,B}:-0.613594030954;CREB1:-0.617473372441;TLX2:-0.621512769726;SPI1:-0.654034840685;NFE2:-0.676522388177;ZFP161:-0.68966112565;IKZF2:-0.690936342442;ALX1:-0.694745310028;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.702084914395;ADNP_IRX_SIX_ZHX:-0.725675358017;SOX5:-0.728486093871;PAX2:-0.730801659752;ETS1,2:-0.75568119394;TFDP1:-0.763376578733;IRF7:-0.763815741633;FOX{D1,D2}:-0.764535510023;FOXP1:-0.780808498507;SPIB:-0.787089030321;ONECUT1,2:-0.796778229917;TGIF1:-0.816011925335;BREu{core}:-0.839537748434;FOXA2:-0.853770481052;CEBPA,B_DDIT3:-0.867728491395;ESRRA:-0.882503843775;PBX1:-0.969316052662;OCT4_SOX2{dimer}:-0.975828996889;ELF1,2,4:-0.983599848737;ZEB1:-1.00058047336;FOXN1:-1.00827799924;PRRX1,2:-1.01719578241;PAX6:-1.03641120147;SOX{8,9,10}:-1.04797356621;JUN:-1.06720538219;CUX2:-1.12616730568;SREBF1,2:-1.13141856573;NFY{A,B,C}:-1.14066158233;ATF2:-1.14549536082;ATF4:-1.15944073049;GATA6:-1.19183494383;RFX2..5_RFXANK_RFXAP:-1.20573729178;ATF5_CREB3:-1.21483443468;RBPJ:-1.30205343325;MYOD1:-1.32328283788;FOX{F1,F2,J1}:-1.35016998111;RORA:-1.6107463171;SOX2:-1.65213582478;CRX:-1.71258419241;FOXQ1:-1.74337852528;POU2F1..3:-1.75269721579;NANOG:-2.22013055283
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11768-123I4;search_select_hide=table117:FF:11768-123I4
}}
}}

Latest revision as of 18:19, 4 June 2020

Name:tenocyte, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12641
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetendon
dev stageNA
sexNA
ageNA
cell typetenocyte
cell lineNA
companyNA
collaborationGundula Schulze-Tanzil
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005903
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12641 CAGE DRX008578 DRR009450
Accession ID Hg19

Library idBAMCTSS
CNhs12641 DRZ000875 DRZ002260
Accession ID Hg38

Library idBAMCTSS
CNhs12641 DRZ012225 DRZ013610
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0701
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.023
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.69
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.156
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.163
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.103
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.854
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.033
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.113
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.5
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.726
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.649
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.116
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0847
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.649
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.436
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0385
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0542
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.156
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.189
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.156
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.156
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.605
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.994
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.985
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.436
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.273
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.76
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12641

Jaspar motifP-value
MA0002.20.417
MA0003.10.176
MA0004.10.0853
MA0006.10.363
MA0007.10.716
MA0009.10.39
MA0014.10.856
MA0017.10.703
MA0018.24.5175e-7
MA0019.10.481
MA0024.10.00781
MA0025.14.12392e-4
MA0027.10.962
MA0028.10.0234
MA0029.10.378
MA0030.10.0332
MA0031.10.16
MA0035.20.0166
MA0038.10.00917
MA0039.20.128
MA0040.10.632
MA0041.10.574
MA0042.10.747
MA0043.12.73736e-7
MA0046.10.0864
MA0047.20.501
MA0048.10.176
MA0050.10.068
MA0051.10.405
MA0052.10.0781
MA0055.10.923
MA0057.10.223
MA0058.10.0385
MA0059.10.965
MA0060.11.32834e-9
MA0061.10.625
MA0062.22.26537e-7
MA0065.20.287
MA0066.10.148
MA0067.10.00321
MA0068.10.0689
MA0069.10.0747
MA0070.10.723
MA0071.10.734
MA0072.10.413
MA0073.10.562
MA0074.10.361
MA0076.10.00238
MA0077.10.335
MA0078.10.708
MA0079.20.571
MA0080.21.3608e-7
MA0081.10.00634
MA0083.10.831
MA0084.10.332
MA0087.10.881
MA0088.10.593
MA0090.10.00298
MA0091.10.0157
MA0092.10.113
MA0093.10.0677
MA0099.20.00211
MA0100.10.919
MA0101.10.00315
MA0102.20.0248
MA0103.10.0658
MA0104.20.169
MA0105.10.483
MA0106.10.0651
MA0107.10.00599
MA0108.20.294
MA0111.10.976
MA0112.28.35297e-5
MA0113.10.404
MA0114.10.663
MA0115.10.652
MA0116.10.0073
MA0117.10.122
MA0119.10.124
MA0122.10.49
MA0124.10.371
MA0125.10.103
MA0131.10.257
MA0135.10.124
MA0136.11.16652e-10
MA0137.20.447
MA0138.20.0556
MA0139.10.976
MA0140.10.0393
MA0141.10.281
MA0142.10.189
MA0143.10.342
MA0144.10.671
MA0145.10.24
MA0146.10.283
MA0147.10.329
MA0148.10.599
MA0149.10.923
MA0150.10.00375
MA0152.10.0123
MA0153.10.999
MA0154.10.077
MA0155.10.27
MA0156.12.65531e-9
MA0157.10.761
MA0159.10.417
MA0160.10.35
MA0162.10.0503
MA0163.13.57348e-4
MA0164.10.988
MA0258.10.121
MA0259.10.332



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12641

Novel motifP-value
10.426
100.343
1000.686
1010.266
1020.219
1030.218
1040.72
1050.0397
1060.54
1070.216
1080.176
1090.349
110.419
1100.179
1110.497
1120.277
1130.385
1140.0624
1150.0115
1160.029
1170.921
1180.472
1191
120.212
1200.234
1210.736
1220.122
1230.0149
1240.525
1250.917
1260.991
1270.521
1280.467
1290.731
130.5
1300.682
1310.201
1320.13
1330.54
1340.599
1350.707
1360.831
1370.894
1380.362
1390.361
140.265
1400.906
1410.656
1420.895
1430.907
1440.278
1450.696
1460.298
1470.178
1480.903
1490.00601
150.891
1500.333
1510.527
1520.153
1530.687
1540.716
1550.129
1560.571
1570.704
1580.0259
1590.725
160.0043
1600.215
1610.693
1620.642
1630.487
1640.152
1650.787
1660.0739
1670.823
1680.876
1690.011
170.295
180.264
190.0028
20.18
200.56
210.0412
220.15
230.223
240.304
250.72
260.306
270.471
280.19
290.243
30.342
300.443
310.462
323.57833e-19
330.753
340.658
350.942
360.0808
370.0878
380.991
390.11
40.732
400.895
410.554
420.899
430.301
440.0683
450.933
460.194
470.747
480.711
490.776
50.95
500.623
510.509
520.992
530.222
540.447
550.305
560.791
570.832
580.478
590.00754
60.334
600.831
610.998
620.626
630.232
640.905
650.241
660.272
670.776
680.269
690.113
70.389
700.1
710.193
720.567
730.1
740.143
750.481
760.977
770.00521
780.494
791.28636e-4
80.12
800.23
810.411
820.152
830.986
840.329
850.215
860.963
870.614
880.409
890.00843
90.35
900.288
910.504
920.239
930.136
940.268
950.395
960.843
970.742
980.812
990.00191



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12641


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000630 (supportive cell)
0000135 (fibrocyte)
0000386 (attachment cell)
0000255 (eukaryotic cell)
0000388 (tendon cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0007846 (dense regular connective tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000043 (tendon)
0007845 (regular connective tissue)
0002204 (musculoskeletal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000280 (human tenocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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