FF:11768-123I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005903 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008578;DRR009450;DRZ000875;DRZ002260;DRZ012225;DRZ013610 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000280 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor3.CNhs12641.11768-123I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11768-123I4 | |id=FF:11768-123I4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000280 | ||
|is_obsolete= | |||
|library_id=CNhs12641 | |||
|library_id_phase_based=2:CNhs12641 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11768 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11768 | |||
|name=tenocyte, donor3 | |name=tenocyte, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12641,LSID952,release012,COMPLETED | |profile_hcage=CNhs12641,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.00418503099738152,0,0.158881042519419,0.0201619749013154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496110429518683,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.150288369934956,0,0,0,0,0,0,0,0,0.0538514784316681,0,0,0,0.156132999089005,0,0.0102962142295965,0,-0.0969923612426051,0,0,0.0587893718759076,0.156132999089005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11912897683241,0.0780664995445025,0,0,-0.0322656520847038,0.184701193371632,0,0.436243174712933,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248442373013725,0,0,0,0.0114892900627608,0.132015913186256,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0.156132999089005,0,0.436243174712933,0,0,0.114148410636373,0,-0.203348442658475,-0.143515142523472,0.0780664995445025,0,-0.0737886115063373,0,0,0,0,0,0,0,0,0,0.308123307760368,0,0.310914734332623,0.051444809564584,0,0,0,0.0272689195786144,-0.149339231809403,0,0.250044977777453,0.487446360085433,0,0,0,0,0.499533252669482,0,0.0352535152952639,-0.0827201683234173,0.0491261879907268,0.115356634205932,-0.055712496781182,0,0,0,0.333729379922174,0.46476039747755,0,0,0.28878507354239,0.317230679955649,0,0,1.22874657583855,0,0.371343943916394,0.363624371854014,0,0.0702059788160395,0,0,0,0,0,0,0,0,0.156132999089005,0,0,0.814996615094029,0.109254578033964,0.0102260363081344,0,0,0,-0.0690427111669778,0,0,-0.217153156867562,-0.00184096262009303,0.00216200041263928,-0.368404559483999,0,0.13385344770302,-0.0110621032299774,0.133695068572526,-0.00362637330922744,0.612937098474727,0.415149351406667,0,0.11912897683241,-0.181141558157497,0.0639902071045185,0.18165913327628,0.0240794040000014,0.219694079909475,-0.0927461277250954,0,0,0.156132999089005,0.352576281914686,0,0,0.23630810646231,0.0411931842939847,0.135929955921357,0.004194672311006,0.0527495081342695,0.0426362544727421,0.391189828025873,0.232195480975779,0,0.267891835581154,0,0,-0.0613911254018049,0.0657330887905222,-0.096280173234949,-0.179582998465746,0,-0.327844462721976,-0.0683442610773682,0,-0.0958279417312453,-0.0294563428387682,0,0,-0.217449944949474,0,0,0.0162872480702794,0,0,-0.194101685292448,0.186930677908917,-0.232855561555545,0,-0.0904124032227285,0,-0.07916449299612,0,-0.288154052235325,0.156132999089005,0,-0.136500805507231,0,-0.0077430026675695,0.24719250313431,0.229160724345355,0.369402386743264,-0.0584468268118252,-0.294228759062798,-0.208263224707177,-0.0322656520847038,0.382612543393876,-0.101364614532639,0.182610943618246,0,0.172713415718737,-0.179380704578376,0.00142334747956785,0.141455536629548,0.156132999089005,0.230302876368283,0,-0.279205943553089,0,-0.119627182821005,0.0153568696895613,-0.168551598487153,-0.116518983148522,0,0.0773386635799951,0.299944544544612,0,0,-0.0311740721821304,0,0.120370692758894,-0.141905345349781,-0.0555174287755846,-0.0609229571346923,0,0.231844104370142,0,0,0.322900096384823,0.369655033192126,0,0.195247176793352,-0.0534122930505948,-0.104098614152146,0.1547667026586,0.436243174712933,0,-0.145582910949576,0,0.156132999089005,-0.169684889105097,0.00551341298548369,0.10663949698045,-0.253326341486756,0.0830952467595385,0.4168568004429,0,0,-0.177527765965176,0,0.000431092339039485,0,0,0.0661512344089118,0.0284380763506359,0,0,0.361327285921938,0.158224784845469,0.0710606436185225,0,0,0,0,0,0,0.329672170091704,-0.0840955541229144,0,-0.01529651153685,0,0.156132999089005,0,0,0,-0.072092225098274,0,0.436243174712933,0.570524011029308,0.0312764939434294,-0.12301741567642,0,0,0,0,0.510699418385609,-0.0471035630057192,0.156132999089005,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0.0780664995445025,0.303596828868274,0.530332889621789,0,0,0,-0.27695440160179,0,0,0,0.0687187478198435,-0.052081351911637,0,0,0.705849947553245,0,0.117744704634479,-0.0815818795468414,0,-0.085076241559554,0.20878678776505,-0.809502913605313,0,0,-0.261347131789888,0,0.138996198793367,-0.0920899495508243,0.146798113937832,0,0,0,0,0,0,0,0,-0.058181513310751,0,0,0,0,0.156132999089005,0,0,0,0,0,0,0.153137236248466,0.178513719435023,0.329262758916869,0,0,0,0,0,0,-0.0241060230789031,0.055045684803869,0,0,0,0,0,0,0,0,-0.200688163569708,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.0403239498026309,0,0,0.158881042519419,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147418690058086,-0.0111919016281268,0,0,0,0,0,0,0,0.225284128837058,0,0,0,0,-0.113884373708977,0,0,0,0.0513366142998481,0,-0.00418503099738152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612012687940922,0.0163069178476311,0.298346754950845,-0.0269076928397199,0,0,0.204595115080695,0,0,0,0,0,0,0.104028464018239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0139663102560239,0,0,0,0,0,0,0.267813780506092,0.712496404567573,-0.0242614559740145,0,0,0,0.2703311474511,0.156132999089005,0,0.043654291052508,0,0.659645433520182,0,0,0,0,0,0,0,0,0.270737776093534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496110429518683,0,0,0,0,0,0,0,0,0,0,0,0,0.180663642960969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.287031197386105,0,0,0,0,0,0,0.156132999089005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.134691090856861,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.0717563668589775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156132999089005,-0.550504042515712,0,0,0,0,0.108495888428086,0,0,0,0,0,0,0.156132999089005,-0.00936199825735085,0,0,0.500117427043148,0,0,0,0,0,0,0,0,0,0,-0.0974776091995005,0,0,0.295991704701012,0,0,0,0,0,0,0,0,0,0,0,0,0.0948128199388782,0,0,0,0,0,0,0,0,0,0,-0.04843004222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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=18.4725 | |rna_weight_ug=18.4725 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.5917722059688e-212!GO:0005737;cytoplasm;6.23896862276739e-184!GO:0043226;organelle;2.16386680594803e-154!GO:0043229;intracellular organelle;4.15140820859677e-154!GO:0043231;intracellular membrane-bound organelle;2.72366710587454e-150!GO:0043227;membrane-bound organelle;5.29173687125902e-150!GO:0044444;cytoplasmic part;1.10023002112833e-139!GO:0044422;organelle part;2.74784091457314e-119!GO:0044446;intracellular organelle part;6.59504004122406e-118!GO:0032991;macromolecular complex;3.04321481605635e-81!GO:0030529;ribonucleoprotein complex;1.07636415940605e-73!GO:0005515;protein binding;8.9142630208334e-71!GO:0044237;cellular metabolic process;6.56997971487029e-65!GO:0044238;primary metabolic process;2.17368764309808e-64!GO:0005739;mitochondrion;1.45056711427931e-61!GO:0043170;macromolecule metabolic process;4.3161761529602e-60!GO:0043233;organelle lumen;1.25690716158498e-56!GO:0031974;membrane-enclosed lumen;1.25690716158498e-56!GO:0003723;RNA binding;1.99231933723652e-51!GO:0044428;nuclear part;2.5223585593801e-49!GO:0031090;organelle membrane;3.6445920988199e-48!GO:0005840;ribosome;3.82822161645169e-46!GO:0019538;protein metabolic process;7.77341201336251e-46!GO:0005634;nucleus;2.05538333169154e-44!GO:0006412;translation;7.76504449223667e-42!GO:0016043;cellular component organization and biogenesis;2.82087440437693e-41!GO:0044429;mitochondrial part;1.35260102489142e-40!GO:0003735;structural constituent of ribosome;1.42070576665154e-40!GO:0044260;cellular macromolecule metabolic process;1.48610565685874e-40!GO:0043234;protein complex;7.13678938740877e-40!GO:0044267;cellular protein metabolic process;1.80694181458121e-39!GO:0015031;protein transport;9.71651789212563e-39!GO:0005829;cytosol;2.8048426870759e-38!GO:0033036;macromolecule localization;2.16094240402825e-37!GO:0006396;RNA processing;3.32116804590767e-36!GO:0045184;establishment of protein localization;5.18283636343917e-36!GO:0033279;ribosomal subunit;8.25264754120211e-36!GO:0009058;biosynthetic process;3.88394983348522e-35!GO:0008104;protein localization;5.17389395596608e-35!GO:0009059;macromolecule biosynthetic process;5.85562632369588e-34!GO:0031967;organelle envelope;3.28862684261265e-33!GO:0031975;envelope;4.50515441670536e-33!GO:0044249;cellular biosynthetic process;5.99245029206426e-32!GO:0016071;mRNA metabolic process;1.55287823066646e-30!GO:0031981;nuclear lumen;3.53382252338629e-30!GO:0046907;intracellular transport;6.89117724481084e-30!GO:0008380;RNA splicing;5.09374077700552e-29!GO:0005740;mitochondrial envelope;6.62126419309465e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.03889985534235e-26!GO:0006397;mRNA processing;3.62061876149181e-26!GO:0031966;mitochondrial membrane;2.84606385414698e-25!GO:0043283;biopolymer metabolic process;3.06927480535125e-25!GO:0006886;intracellular protein transport;4.79332635417077e-25!GO:0043228;non-membrane-bound organelle;5.83473619221854e-25!GO:0043232;intracellular non-membrane-bound organelle;5.83473619221854e-25!GO:0065003;macromolecular complex assembly;6.33297157977423e-25!GO:0019866;organelle inner membrane;8.51212225023097e-25!GO:0010467;gene expression;1.00967714700767e-24!GO:0005743;mitochondrial inner membrane;1.36431691592032e-23!GO:0005783;endoplasmic reticulum;2.82848722628466e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.25340718594591e-23!GO:0022607;cellular component assembly;9.52861601984298e-23!GO:0006996;organelle organization and biogenesis;3.93978860433621e-22!GO:0006119;oxidative phosphorylation;9.4230218827318e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.78347860322909e-21!GO:0005681;spliceosome;3.67590248692588e-20!GO:0044455;mitochondrial membrane part;4.30792179110077e-20!GO:0044445;cytosolic part;5.08971481855018e-20!GO:0006457;protein folding;1.1445680004789e-19!GO:0015934;large ribosomal subunit;1.5550347588193e-19!GO:0012505;endomembrane system;2.61740331778194e-19!GO:0005654;nucleoplasm;3.41740600589078e-18!GO:0044432;endoplasmic reticulum part;5.42721227300952e-18!GO:0048770;pigment granule;1.07287780557175e-17!GO:0042470;melanosome;1.07287780557175e-17!GO:0051649;establishment of cellular localization;2.01898021934058e-17!GO:0005746;mitochondrial respiratory chain;2.14097788092259e-17!GO:0051641;cellular localization;2.23957060100187e-17!GO:0015935;small ribosomal subunit;2.8182659582629e-17!GO:0031980;mitochondrial lumen;9.7959357046798e-17!GO:0005759;mitochondrial matrix;9.7959357046798e-17!GO:0005794;Golgi apparatus;1.00536789094558e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.44491978751765e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.82041839917508e-15!GO:0016462;pyrophosphatase activity;1.9038230319408e-15!GO:0051186;cofactor metabolic process;2.02875234586742e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;2.72785369114643e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.61787506836204e-15!GO:0003954;NADH dehydrogenase activity;3.61787506836204e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.61787506836204e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.68773856414897e-15!GO:0017111;nucleoside-triphosphatase activity;6.54160201076043e-15!GO:0048193;Golgi vesicle transport;9.33558085169092e-15!GO:0044451;nucleoplasm part;1.14288545108964e-14!GO:0022618;protein-RNA complex assembly;1.15677368418473e-14!GO:0006259;DNA metabolic process;1.27262850322862e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.63677872285676e-14!GO:0006512;ubiquitin cycle;1.8022767660829e-13!GO:0016874;ligase activity;1.97071648131373e-13!GO:0044265;cellular macromolecule catabolic process;2.00470188953699e-13!GO:0051082;unfolded protein binding;2.26201816214754e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.55709391196971e-13!GO:0007049;cell cycle;2.80202984080046e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.91564853252235e-13!GO:0045271;respiratory chain complex I;2.91564853252235e-13!GO:0005747;mitochondrial respiratory chain complex I;2.91564853252235e-13!GO:0043285;biopolymer catabolic process;3.2841014507366e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.99657630026168e-13!GO:0042773;ATP synthesis coupled electron transport;3.99657630026168e-13!GO:0005793;ER-Golgi intermediate compartment;5.2433949486571e-13!GO:0006605;protein targeting;5.40716769546474e-13!GO:0005761;mitochondrial ribosome;5.40716769546474e-13!GO:0000313;organellar ribosome;5.40716769546474e-13!GO:0005730;nucleolus;5.40716769546474e-13!GO:0008135;translation factor activity, nucleic acid binding;5.70950957523202e-13!GO:0008134;transcription factor binding;7.44715219827375e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;8.44245350645377e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.10883179235265e-13!GO:0000166;nucleotide binding;1.06463037438431e-12!GO:0016192;vesicle-mediated transport;1.07603580102543e-12!GO:0019941;modification-dependent protein catabolic process;1.71458458123182e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.71458458123182e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.72825130095766e-12!GO:0044257;cellular protein catabolic process;1.84641207999228e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.38932390624023e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.88636742695997e-12!GO:0009057;macromolecule catabolic process;4.24538871438876e-12!GO:0005789;endoplasmic reticulum membrane;5.35667368192972e-12!GO:0006732;coenzyme metabolic process;1.1125639112189e-11!GO:0044248;cellular catabolic process;1.40197659767677e-11!GO:0030163;protein catabolic process;2.37400191304079e-11!GO:0009055;electron carrier activity;4.38343899422307e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.55464478453079e-10!GO:0000375;RNA splicing, via transesterification reactions;1.55464478453079e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.55464478453079e-10!GO:0022402;cell cycle process;1.78782712045336e-10!GO:0016491;oxidoreductase activity;2.22779957223991e-10!GO:0009259;ribonucleotide metabolic process;4.27508128933596e-10!GO:0003743;translation initiation factor activity;6.12491701860104e-10!GO:0003676;nucleic acid binding;1.04446863149491e-09!GO:0000278;mitotic cell cycle;1.2530426027882e-09!GO:0009150;purine ribonucleotide metabolic process;1.67095644235939e-09!GO:0006163;purine nucleotide metabolic process;2.00995984697464e-09!GO:0006413;translational initiation;2.10299727542705e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.34330983154113e-09!GO:0012501;programmed cell death;3.91964014272819e-09!GO:0006446;regulation of translational initiation;5.26731590332644e-09!GO:0009260;ribonucleotide biosynthetic process;5.82502362445093e-09!GO:0042254;ribosome biogenesis and assembly;6.42860300271043e-09!GO:0006915;apoptosis;6.97377457981894e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.27954185806983e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.60194526900825e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.60194526900825e-09!GO:0009152;purine ribonucleotide biosynthetic process;7.65180946701483e-09!GO:0008639;small protein conjugating enzyme activity;7.71398098953209e-09!GO:0017076;purine nucleotide binding;7.73790247103633e-09!GO:0006974;response to DNA damage stimulus;7.82619691982043e-09!GO:0043412;biopolymer modification;8.12380905184096e-09!GO:0048523;negative regulation of cellular process;8.79957436326139e-09!GO:0005788;endoplasmic reticulum lumen;8.84296147034782e-09!GO:0006164;purine nucleotide biosynthetic process;9.37945944710257e-09!GO:0009141;nucleoside triphosphate metabolic process;1.01806191847382e-08!GO:0004842;ubiquitin-protein ligase activity;1.32521416297771e-08!GO:0032553;ribonucleotide binding;1.48652193378612e-08!GO:0032555;purine ribonucleotide binding;1.48652193378612e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.55418385626081e-08!GO:0019787;small conjugating protein ligase activity;1.78340528656721e-08!GO:0045333;cellular respiration;1.82060452616403e-08!GO:0009060;aerobic respiration;1.94640848463999e-08!GO:0003712;transcription cofactor activity;1.95613212513226e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.12590901502077e-08!GO:0016070;RNA metabolic process;2.93418385926012e-08!GO:0006461;protein complex assembly;3.01906809635361e-08!GO:0016604;nuclear body;3.35884340210098e-08!GO:0008219;cell death;3.67140406683355e-08!GO:0016265;death;3.67140406683355e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.56338375807369e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.56338375807369e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.74028259380301e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.74028259380301e-08!GO:0006464;protein modification process;5.01134751613942e-08!GO:0015986;ATP synthesis coupled proton transport;5.58609606917915e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.58609606917915e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.86988535922758e-08!GO:0008565;protein transporter activity;6.16075919320715e-08!GO:0003924;GTPase activity;7.41987425377083e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.33786657196812e-08!GO:0005768;endosome;9.51123537170091e-08!GO:0046034;ATP metabolic process;9.99068958765418e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.02710793420826e-07!GO:0030120;vesicle coat;1.02710793420826e-07!GO:0030662;coated vesicle membrane;1.02710793420826e-07!GO:0006913;nucleocytoplasmic transport;1.33972056125296e-07!GO:0016881;acid-amino acid ligase activity;1.43747160357045e-07!GO:0000074;regulation of progression through cell cycle;1.46539109551224e-07!GO:0005635;nuclear envelope;1.613699540444e-07!GO:0051726;regulation of cell cycle;1.68303991425892e-07!GO:0008361;regulation of cell size;1.92181089465554e-07!GO:0016049;cell growth;1.94238301731621e-07!GO:0005773;vacuole;1.96629554014645e-07!GO:0044431;Golgi apparatus part;2.02151649308158e-07!GO:0009719;response to endogenous stimulus;2.11991273221272e-07!GO:0048519;negative regulation of biological process;2.2468252107807e-07!GO:0051169;nuclear transport;2.25214026055737e-07!GO:0019829;cation-transporting ATPase activity;2.87738190290545e-07!GO:0001558;regulation of cell growth;3.31633741107328e-07!GO:0042623;ATPase activity, coupled;4.38300774511761e-07!GO:0031965;nuclear membrane;4.78273579310476e-07!GO:0009056;catabolic process;5.29054044694218e-07!GO:0006754;ATP biosynthetic process;5.8479006668818e-07!GO:0006753;nucleoside phosphate metabolic process;5.8479006668818e-07!GO:0048475;coated membrane;5.8479006668818e-07!GO:0030117;membrane coat;5.8479006668818e-07!GO:0016887;ATPase activity;5.96784764395901e-07!GO:0051188;cofactor biosynthetic process;5.99882236343815e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.71770892945039e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.71770892945039e-07!GO:0017038;protein import;7.14189726221507e-07!GO:0016607;nuclear speck;7.96937750548662e-07!GO:0051187;cofactor catabolic process;8.22830593731519e-07!GO:0006099;tricarboxylic acid cycle;9.52577329806969e-07!GO:0046356;acetyl-CoA catabolic process;9.52577329806969e-07!GO:0006091;generation of precursor metabolites and energy;9.90142495231295e-07!GO:0006281;DNA repair;1.17571672259957e-06!GO:0051246;regulation of protein metabolic process;1.29423382178592e-06!GO:0009117;nucleotide metabolic process;1.44278497870176e-06!GO:0044453;nuclear membrane part;1.46606474711484e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.59052131833753e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.59052131833753e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.59052131833753e-06!GO:0045259;proton-transporting ATP synthase complex;1.59446852132357e-06!GO:0006399;tRNA metabolic process;1.62126352287382e-06!GO:0005524;ATP binding;1.84142024972985e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.85339167796531e-06!GO:0030554;adenyl nucleotide binding;1.95863241473069e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.97850675198533e-06!GO:0009109;coenzyme catabolic process;2.01727575337749e-06!GO:0000323;lytic vacuole;2.2393483617777e-06!GO:0005764;lysosome;2.2393483617777e-06!GO:0043687;post-translational protein modification;2.3864326956088e-06!GO:0006084;acetyl-CoA metabolic process;2.55917308112521e-06!GO:0043038;amino acid activation;2.65632259817083e-06!GO:0006418;tRNA aminoacylation for protein translation;2.65632259817083e-06!GO:0043039;tRNA aminoacylation;2.65632259817083e-06!GO:0000087;M phase of mitotic cell cycle;2.73937912249598e-06!GO:0007067;mitosis;2.83361858654934e-06!GO:0032559;adenyl ribonucleotide binding;2.90235483673797e-06!GO:0004298;threonine endopeptidase activity;4.36693482592582e-06!GO:0022403;cell cycle phase;4.39959363150807e-06!GO:0003697;single-stranded DNA binding;4.39959363150807e-06!GO:0042981;regulation of apoptosis;4.65149217689621e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.65888579534454e-06!GO:0031252;leading edge;4.92599698975346e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.32566554655242e-06!GO:0031988;membrane-bound vesicle;5.45154979029692e-06!GO:0043067;regulation of programmed cell death;5.94464270859792e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.48817280029302e-06!GO:0006364;rRNA processing;7.09149752807972e-06!GO:0006366;transcription from RNA polymerase II promoter;7.26510409327254e-06!GO:0007005;mitochondrion organization and biogenesis;9.38773909063783e-06!GO:0005694;chromosome;9.62337569455416e-06!GO:0016072;rRNA metabolic process;1.00150906135057e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.05069262673701e-05!GO:0043069;negative regulation of programmed cell death;1.19397599898855e-05!GO:0044440;endosomal part;1.2356691052553e-05!GO:0010008;endosome membrane;1.2356691052553e-05!GO:0043566;structure-specific DNA binding;1.25037457571867e-05!GO:0051789;response to protein stimulus;1.34869497171958e-05!GO:0006986;response to unfolded protein;1.34869497171958e-05!GO:0043066;negative regulation of apoptosis;1.34982262928844e-05!GO:0006916;anti-apoptosis;1.47144665885049e-05!GO:0000139;Golgi membrane;1.48582263934136e-05!GO:0006260;DNA replication;1.48582263934136e-05!GO:0045786;negative regulation of progression through cell cycle;1.65924369866507e-05!GO:0006613;cotranslational protein targeting to membrane;1.70085346503219e-05!GO:0016853;isomerase activity;1.70891502248205e-05!GO:0031982;vesicle;1.81500735773428e-05!GO:0065002;intracellular protein transport across a membrane;1.8482046137675e-05!GO:0006752;group transfer coenzyme metabolic process;1.89411156459613e-05!GO:0031324;negative regulation of cellular metabolic process;1.90276891181641e-05!GO:0031410;cytoplasmic vesicle;1.974080112719e-05!GO:0032446;protein modification by small protein conjugation;2.41262621530181e-05!GO:0009108;coenzyme biosynthetic process;2.43955574410701e-05!GO:0000151;ubiquitin ligase complex;2.74912560750991e-05!GO:0044427;chromosomal part;3.06174341839888e-05!GO:0005798;Golgi-associated vesicle;3.11915093990144e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.27018819386354e-05!GO:0000245;spliceosome assembly;3.34255239240005e-05!GO:0016567;protein ubiquitination;3.4007454945878e-05!GO:0008654;phospholipid biosynthetic process;3.53779824729446e-05!GO:0005762;mitochondrial large ribosomal subunit;3.53779824729446e-05!GO:0000315;organellar large ribosomal subunit;3.53779824729446e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;3.84510656240369e-05!GO:0003714;transcription corepressor activity;4.06812500232375e-05!GO:0008026;ATP-dependent helicase activity;4.23877961801564e-05!GO:0051276;chromosome organization and biogenesis;4.23877961801564e-05!GO:0005643;nuclear pore;4.52886836009428e-05!GO:0005769;early endosome;4.59388323989948e-05!GO:0030036;actin cytoskeleton organization and biogenesis;5.08003341086012e-05!GO:0016787;hydrolase activity;5.3311068655561e-05!GO:0065004;protein-DNA complex assembly;5.58836854041065e-05!GO:0030867;rough endoplasmic reticulum membrane;5.69398321992037e-05!GO:0040008;regulation of growth;6.0192001928346e-05!GO:0016564;transcription repressor activity;6.0544767443404e-05!GO:0045454;cell redox homeostasis;6.91799604625828e-05!GO:0004386;helicase activity;6.99400808245665e-05!GO:0005525;GTP binding;7.02661284398117e-05!GO:0050794;regulation of cellular process;7.4905443643858e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.64196462936183e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.72860010985049e-05!GO:0005770;late endosome;7.91762294457617e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.9750415218958e-05!GO:0006323;DNA packaging;8.03799731418798e-05!GO:0051301;cell division;8.74852796651285e-05!GO:0016859;cis-trans isomerase activity;9.92994742316243e-05!GO:0015630;microtubule cytoskeleton;0.000109672352098207!GO:0051170;nuclear import;0.000133749707403187!GO:0030133;transport vesicle;0.000141357233907279!GO:0009892;negative regulation of metabolic process;0.000142137681936263!GO:0006612;protein targeting to membrane;0.000144884224646958!GO:0046930;pore complex;0.000147658075635066!GO:0006606;protein import into nucleus;0.00017420122354564!GO:0006333;chromatin assembly or disassembly;0.000184440370891623!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000194837902288923!GO:0030029;actin filament-based process;0.000205441115628081!GO:0043021;ribonucleoprotein binding;0.00020582376780776!GO:0008092;cytoskeletal protein binding;0.000237165161203142!GO:0005905;coated pit;0.000280030934486451!GO:0000785;chromatin;0.000285408938600905!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000287936725369058!GO:0043623;cellular protein complex assembly;0.000309132663867179!GO:0007010;cytoskeleton organization and biogenesis;0.000324978635508111!GO:0005813;centrosome;0.000358317568954081!GO:0030663;COPI coated vesicle membrane;0.000361146831503086!GO:0030126;COPI vesicle coat;0.000361146831503086!GO:0003724;RNA helicase activity;0.000394892122852778!GO:0005791;rough endoplasmic reticulum;0.000427232215615707!GO:0006793;phosphorus metabolic process;0.000445895969303489!GO:0006796;phosphate metabolic process;0.000445895969303489!GO:0016779;nucleotidyltransferase activity;0.00044762612703773!GO:0016310;phosphorylation;0.000467785459752325!GO:0050657;nucleic acid transport;0.000472414949261435!GO:0051236;establishment of RNA localization;0.000472414949261435!GO:0050658;RNA transport;0.000472414949261435!GO:0046474;glycerophospholipid biosynthetic process;0.000472542307985903!GO:0005885;Arp2/3 protein complex;0.000474876172508615!GO:0044262;cellular carbohydrate metabolic process;0.000485310060726093!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000491020500770153!GO:0000314;organellar small ribosomal subunit;0.000491858151877887!GO:0005763;mitochondrial small ribosomal subunit;0.000491858151877887!GO:0006403;RNA localization;0.000509087764024314!GO:0000279;M phase;0.000522750926861048!GO:0006334;nucleosome assembly;0.000522750926861048!GO:0003713;transcription coactivator activity;0.000592826724303929!GO:0016481;negative regulation of transcription;0.000625035293664132!GO:0032561;guanyl ribonucleotide binding;0.000641772627716687!GO:0019001;guanyl nucleotide binding;0.000641772627716687!GO:0005815;microtubule organizing center;0.000669839365616294!GO:0005048;signal sequence binding;0.000731664670055457!GO:0051329;interphase of mitotic cell cycle;0.000749048812681791!GO:0030137;COPI-coated vesicle;0.000802371495478372!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000937778785144139!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000955836682005857!GO:0005667;transcription factor complex;0.000955836682005857!GO:0009165;nucleotide biosynthetic process;0.000956300040938007!GO:0004576;oligosaccharyl transferase activity;0.000969574811703614!GO:0031497;chromatin assembly;0.000976868180120377!GO:0008250;oligosaccharyl transferase complex;0.000981146945697722!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00101797695185195!GO:0051920;peroxiredoxin activity;0.00103436801318644!GO:0019843;rRNA binding;0.00104329374245959!GO:0051325;interphase;0.0010983297368362!GO:0019867;outer membrane;0.00111545560217677!GO:0051252;regulation of RNA metabolic process;0.00113551517985199!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0011871647731714!GO:0051427;hormone receptor binding;0.00143526771399122!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00143624512190223!GO:0016740;transferase activity;0.00144014625726745!GO:0050789;regulation of biological process;0.00147606562309962!GO:0007243;protein kinase cascade;0.00149287863104491!GO:0031968;organelle outer membrane;0.00156136431522038!GO:0003729;mRNA binding;0.00176380377840907!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00190299406721999!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00190299406721999!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00190299406721999!GO:0006891;intra-Golgi vesicle-mediated transport;0.0020980131088028!GO:0022890;inorganic cation transmembrane transporter activity;0.00210599288571839!GO:0046489;phosphoinositide biosynthetic process;0.00212099380782252!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00218519486357692!GO:0016563;transcription activator activity;0.00224970093074788!GO:0019899;enzyme binding;0.00227451856858127!GO:0048522;positive regulation of cellular process;0.0022968332856448!GO:0005520;insulin-like growth factor binding;0.00231339305290865!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00243126909620981!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00243126909620981!GO:0043488;regulation of mRNA stability;0.00243677781457701!GO:0043487;regulation of RNA stability;0.00243677781457701!GO:0018196;peptidyl-asparagine modification;0.00243677781457701!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00243677781457701!GO:0005583;fibrillar collagen;0.00250879247094263!GO:0005819;spindle;0.00256010326750994!GO:0035257;nuclear hormone receptor binding;0.00258631302793259!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00258631302793259!GO:0015002;heme-copper terminal oxidase activity;0.00258631302793259!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00258631302793259!GO:0004129;cytochrome-c oxidase activity;0.00258631302793259!GO:0016044;membrane organization and biogenesis;0.00260318314653664!GO:0043681;protein import into mitochondrion;0.00260495339550597!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00260495339550597!GO:0016197;endosome transport;0.0027466984682858!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00283521573120119!GO:0030027;lamellipodium;0.00285263786053367!GO:0005741;mitochondrial outer membrane;0.00289997362921115!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0029265220749473!GO:0048500;signal recognition particle;0.00300913548848407!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00305996641525956!GO:0015399;primary active transmembrane transporter activity;0.00305996641525956!GO:0007050;cell cycle arrest;0.00311369246116323!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00334820140716208!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00353068052665559!GO:0006979;response to oxidative stress;0.00359086237678416!GO:0030132;clathrin coat of coated pit;0.00363792603557961!GO:0051128;regulation of cellular component organization and biogenesis;0.00369984549180645!GO:0001726;ruffle;0.00386366640326332!GO:0008186;RNA-dependent ATPase activity;0.00479785282113371!GO:0006509;membrane protein ectodomain proteolysis;0.00483059367560713!GO:0033619;membrane protein proteolysis;0.00483059367560713!GO:0003899;DNA-directed RNA polymerase activity;0.00483638480927283!GO:0006118;electron transport;0.00487594947610899!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00521983672436161!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00521983672436161!GO:0051028;mRNA transport;0.00523669590848111!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00537014390172189!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00538975930531136!GO:0006650;glycerophospholipid metabolic process;0.00562652009783347!GO:0015992;proton transport;0.00562921189083246!GO:0030658;transport vesicle membrane;0.0057439707205096!GO:0006414;translational elongation;0.00577085993302621!GO:0008154;actin polymerization and/or depolymerization;0.00596008919930243!GO:0030176;integral to endoplasmic reticulum membrane;0.00598264562112861!GO:0006818;hydrogen transport;0.00598264562112861!GO:0008632;apoptotic program;0.0061220901759851!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00621473022818952!GO:0046467;membrane lipid biosynthetic process;0.00643755863919261!GO:0042802;identical protein binding;0.00648005363439612!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00651116644858083!GO:0016568;chromatin modification;0.00654770895724705!GO:0043284;biopolymer biosynthetic process;0.00660458331042352!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0067280205959515!GO:0045047;protein targeting to ER;0.0067280205959515!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00679482932256679!GO:0030880;RNA polymerase complex;0.0071253845553349!GO:0008243;plasminogen activator activity;0.00740553467449348!GO:0008610;lipid biosynthetic process;0.00750821374611584!GO:0006383;transcription from RNA polymerase III promoter;0.00757920910013516!GO:0006354;RNA elongation;0.00770304550684437!GO:0030127;COPII vesicle coat;0.00829062116808795!GO:0012507;ER to Golgi transport vesicle membrane;0.00829062116808795!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00844584887928958!GO:0050662;coenzyme binding;0.00844584887928958!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0084522391372312!GO:0065009;regulation of a molecular function;0.00845348134077702!GO:0030134;ER to Golgi transport vesicle;0.00853861488543046!GO:0017166;vinculin binding;0.00866310053486816!GO:0007006;mitochondrial membrane organization and biogenesis;0.00869913610364935!GO:0008180;signalosome;0.00876721817210455!GO:0048471;perinuclear region of cytoplasm;0.00876721817210455!GO:0007264;small GTPase mediated signal transduction;0.0089497134051205!GO:0008312;7S RNA binding;0.0089497134051205!GO:0006497;protein amino acid lipidation;0.0089497134051205!GO:0030041;actin filament polymerization;0.0089497134051205!GO:0007040;lysosome organization and biogenesis;0.0089497134051205!GO:0051168;nuclear export;0.00902018874888325!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00903659555102878!GO:0031072;heat shock protein binding;0.00915529751818907!GO:0006626;protein targeting to mitochondrion;0.00915696588315565!GO:0004177;aminopeptidase activity;0.00919009884261267!GO:0005869;dynactin complex;0.00929759822476478!GO:0006506;GPI anchor biosynthetic process;0.00944293006589655!GO:0051287;NAD binding;0.00948130092028931!GO:0003746;translation elongation factor activity;0.00961097973989613!GO:0015631;tubulin binding;0.0096242647021741!GO:0005581;collagen;0.00969320379975624!GO:0046483;heterocycle metabolic process;0.00972485841122972!GO:0030659;cytoplasmic vesicle membrane;0.0099410742753319!GO:0001527;microfibril;0.0100442741806663!GO:0003711;transcription elongation regulator activity;0.0100766547314271!GO:0031543;peptidyl-proline dioxygenase activity;0.0103843988449103!GO:0008139;nuclear localization sequence binding;0.0107012570222129!GO:0006402;mRNA catabolic process;0.0107246437245766!GO:0030118;clathrin coat;0.0112726521534264!GO:0004004;ATP-dependent RNA helicase activity;0.0114249221270515!GO:0045792;negative regulation of cell size;0.0115497958844154!GO:0006740;NADPH regeneration;0.0115580696845543!GO:0006098;pentose-phosphate shunt;0.0115580696845543!GO:0030308;negative regulation of cell growth;0.0115580696845543!GO:0019798;procollagen-proline dioxygenase activity;0.0116982225843814!GO:0003690;double-stranded DNA binding;0.0125127618172378!GO:0006595;polyamine metabolic process;0.0125708423458903!GO:0048487;beta-tubulin binding;0.0125708423458903!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0125886454134016!GO:0006892;post-Golgi vesicle-mediated transport;0.0127114319475734!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0127620038848314!GO:0005684;U2-dependent spliceosome;0.0129743127800553!GO:0005586;collagen type III;0.0132344479734114!GO:0007033;vacuole organization and biogenesis;0.0132969825974988!GO:0016363;nuclear matrix;0.0134668691775789!GO:0031901;early endosome membrane;0.013572452109811!GO:0030660;Golgi-associated vesicle membrane;0.01432077758359!GO:0030521;androgen receptor signaling pathway;0.0144127111139164!GO:0005862;muscle thin filament tropomyosin;0.0144757957405638!GO:0006778;porphyrin metabolic process;0.014535950275392!GO:0033013;tetrapyrrole metabolic process;0.014535950275392!GO:0043492;ATPase activity, coupled to movement of substances;0.0145663122100199!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0145682680435734!GO:0000428;DNA-directed RNA polymerase complex;0.0145682680435734!GO:0009967;positive regulation of signal transduction;0.0145682680435734!GO:0044420;extracellular matrix part;0.0145875475412728!GO:0031418;L-ascorbic acid binding;0.0151492005137411!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0159200961372351!GO:0006505;GPI anchor metabolic process;0.0159302474824333!GO:0043022;ribosome binding;0.0165138595290379!GO:0006839;mitochondrial transport;0.0165138595290379!GO:0016408;C-acyltransferase activity;0.016591883177092!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0167985941036335!GO:0006289;nucleotide-excision repair;0.0169723587206978!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.01709015756732!GO:0016126;sterol biosynthetic process;0.0171108274605988!GO:0031529;ruffle organization and biogenesis;0.0173649429666813!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0175277717290057!GO:0007034;vacuolar transport;0.0178384702418911!GO:0051087;chaperone binding;0.0179018017023293!GO:0030031;cell projection biogenesis;0.0181371930269359!GO:0000082;G1/S transition of mitotic cell cycle;0.0185206846546825!GO:0030984;kininogen binding;0.0191180641974389!GO:0004213;cathepsin B activity;0.0191180641974389!GO:0042158;lipoprotein biosynthetic process;0.019267838338947!GO:0016272;prefoldin complex;0.0201555737754276!GO:0030384;phosphoinositide metabolic process;0.0205293409785584!GO:0000339;RNA cap binding;0.0214756490138677!GO:0003756;protein disulfide isomerase activity;0.0214756490138677!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0214756490138677!GO:0007051;spindle organization and biogenesis;0.0215054849958942!GO:0035035;histone acetyltransferase binding;0.0215570590735116!GO:0045892;negative regulation of transcription, DNA-dependent;0.0219745093227013!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0220342444639438!GO:0042168;heme metabolic process;0.0221697210450539!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0221697210450539!GO:0030833;regulation of actin filament polymerization;0.0224357327602117!GO:0006401;RNA catabolic process;0.022481865763775!GO:0048518;positive regulation of biological process;0.022481865763775!GO:0022408;negative regulation of cell-cell adhesion;0.022481865763775!GO:0044433;cytoplasmic vesicle part;0.022481865763775!GO:0048468;cell development;0.0225033704103388!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0226942931077967!GO:0031902;late endosome membrane;0.0227184340557192!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0227511424447642!GO:0000059;protein import into nucleus, docking;0.0230342460601427!GO:0050811;GABA receptor binding;0.0232690670272355!GO:0008047;enzyme activator activity;0.0232690670272355!GO:0000209;protein polyubiquitination;0.0234355073680952!GO:0051540;metal cluster binding;0.0243169576663179!GO:0051536;iron-sulfur cluster binding;0.0243169576663179!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0243169576663179!GO:0033043;regulation of organelle organization and biogenesis;0.0243169576663179!GO:0030032;lamellipodium biogenesis;0.0253534406137818!GO:0035258;steroid hormone receptor binding;0.0254249523787634!GO:0009112;nucleobase metabolic process;0.0259712162726263!GO:0019752;carboxylic acid metabolic process;0.0260526331294787!GO:0006790;sulfur metabolic process;0.0270043291384811!GO:0003779;actin binding;0.0271806214285847!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0272368074833643!GO:0006082;organic acid metabolic process;0.0273590710050973!GO:0031272;regulation of pseudopodium formation;0.0273590710050973!GO:0031269;pseudopodium formation;0.0273590710050973!GO:0031344;regulation of cell projection organization and biogenesis;0.0273590710050973!GO:0031268;pseudopodium organization and biogenesis;0.0273590710050973!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0273590710050973!GO:0031274;positive regulation of pseudopodium formation;0.0273590710050973!GO:0019206;nucleoside kinase activity;0.0278075274954195!GO:0005774;vacuolar membrane;0.0278075274954195!GO:0000049;tRNA binding;0.0278160445028299!GO:0005832;chaperonin-containing T-complex;0.0290862083191075!GO:0045926;negative regulation of growth;0.0293447962686295!GO:0003923;GPI-anchor transamidase activity;0.0299858085060036!GO:0016255;attachment of GPI anchor to protein;0.0299858085060036!GO:0042765;GPI-anchor transamidase complex;0.0299858085060036!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0304869626833763!GO:0048144;fibroblast proliferation;0.0304869626833763!GO:0048145;regulation of fibroblast proliferation;0.0304869626833763!GO:0009225;nucleotide-sugar metabolic process;0.0304869626833763!GO:0006950;response to stress;0.0304943392788385!GO:0030125;clathrin vesicle coat;0.0304949535712161!GO:0030665;clathrin coated vesicle membrane;0.0304949535712161!GO:0008484;sulfuric ester hydrolase activity;0.0310827000632899!GO:0015036;disulfide oxidoreductase activity;0.0316896314732833!GO:0001953;negative regulation of cell-matrix adhesion;0.0320196062356525!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0328981437756702!GO:0004784;superoxide dismutase activity;0.0328981437756702!GO:0005801;cis-Golgi network;0.0333042455968746!GO:0007021;tubulin folding;0.0335676473914393!GO:0030145;manganese ion binding;0.0335676473914393!GO:0030119;AP-type membrane coat adaptor complex;0.0339626132939525!GO:0009116;nucleoside metabolic process;0.0347396000957099!GO:0032984;macromolecular complex disassembly;0.0349221003047709!GO:0005657;replication fork;0.0369425746365488!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.036950219646616!GO:0016860;intramolecular oxidoreductase activity;0.0370364642685719!GO:0008022;protein C-terminus binding;0.0370364642685719!GO:0004287;prolyl oligopeptidase activity;0.037844271400327!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0379560124952553!GO:0006261;DNA-dependent DNA replication;0.0392058510458368!GO:0000902;cell morphogenesis;0.0393430351979456!GO:0032989;cellular structure morphogenesis;0.0393430351979456!GO:0006779;porphyrin biosynthetic process;0.0397398256470482!GO:0033014;tetrapyrrole biosynthetic process;0.0397398256470482!GO:0001872;zymosan binding;0.0397398256470482!GO:0001878;response to yeast;0.0397398256470482!GO:0050681;androgen receptor binding;0.0414402631384079!GO:0000075;cell cycle checkpoint;0.042198717284616!GO:0030911;TPR domain binding;0.0423440915289807!GO:0012506;vesicle membrane;0.0423759392854362!GO:0048146;positive regulation of fibroblast proliferation;0.0426521810985868!GO:0051098;regulation of binding;0.0426719972993676!GO:0031124;mRNA 3'-end processing;0.0434228029361987!GO:0045045;secretory pathway;0.0436377178004726!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0449845047667059!GO:0031371;ubiquitin conjugating enzyme complex;0.0455093776951785!GO:0051539;4 iron, 4 sulfur cluster binding;0.0455093776951785!GO:0003678;DNA helicase activity;0.0456552255727899!GO:0005637;nuclear inner membrane;0.0465888015873629!GO:0030518;steroid hormone receptor signaling pathway;0.0466152600627806!GO:0003684;damaged DNA binding;0.0467066269098831!GO:0044452;nucleolar part;0.0467066269098831!GO:0009081;branched chain family amino acid metabolic process;0.0468131554136661!GO:0030508;thiol-disulfide exchange intermediate activity;0.0469079249332776!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0475563970155342!GO:0008637;apoptotic mitochondrial changes;0.0488244770893769!GO:0006897;endocytosis;0.0488244770893769!GO:0010324;membrane invagination;0.0488244770893769!GO:0043065;positive regulation of apoptosis;0.0495388997286019 | |||
|sample_id=11768 | |sample_id=11768 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=tendon | |sample_tissue=tendon | ||
|top_motifs=TAL1_TCF{3,4,12}:2.7966823232;ESR1:2.50940710469;UFEwm:2.49820305039;ALX4:2.31274477025;NKX2-2,8:2.24117549756;EVI1:1.94413707931;HES1:1.86973670703;KLF4:1.80526835151;NR3C1:1.79745510588;GLI1..3:1.79601045201;HOX{A4,D4}:1.6573335967;IKZF1:1.65200806319;FOXL1:1.60006050414;PAX1,9:1.55549326071;RXRA_VDR{dimer}:1.54454514796;EN1,2:1.4650952607;NKX3-1:1.45123186776;ATF6:1.44533892229;MYBL2:1.43026255929;HMGA1,2:1.40224502981;GZF1:1.37394395848;AIRE:1.34259244748;ZNF384:1.33539250967;ZNF238:1.3351312895;NKX3-2:1.30776124933;TP53:1.28589034349;RXR{A,B,G}:1.28149245235;SPZ1:1.1659584255;GCM1,2:1.12914123658;NR6A1:1.11542145516;TFAP4:1.10562830308;TEAD1:1.06975274251;HAND1,2:1.06192213444;NKX2-1,4:1.0443262304;HSF1,2:1.04175265353;NFE2L1:1.04118664025;ZNF423:1.0252408926;FOXO1,3,4:1.02068106276;EBF1:0.98624616765;XBP1:0.982534307494;GATA4:0.965887395997;ZIC1..3:0.939615246654;CDC5L:0.936392973096;HOX{A5,B5}:0.93333365025;TFCP2:0.89051550422;VSX1,2:0.835217173064;ZNF148:0.780790501846;PAX5:0.769422632526;SMAD1..7,9:0.755597656323;NR1H4:0.729100335881;GFI1B:0.725123732774;NANOG{mouse}:0.691777072566;FOXM1:0.690702526141;MAFB:0.653760749909;TBP:0.617194379727;HMX1:0.585314845215;GTF2I:0.581302796923;XCPE1{core}:0.577368741935;POU3F1..4:0.563504228819;TLX1..3_NFIC{dimer}:0.555635068094;PRDM1:0.537147039162;YY1:0.534211325409;LHX3,4:0.486299471528;TEF:0.453953349638;RREB1:0.446387810934;SRF:0.42449580127;HIC1:0.399252617026;HOX{A6,A7,B6,B7}:0.394209151951;GTF2A1,2:0.361787576084;ZBTB6:0.359141151773;MYB:0.350895631398;MTE{core}:0.34365917646;TFAP2B:0.330932486016;FOXD3:0.326181989918;NFATC1..3:0.323754689643;DBP:0.309159613176;TFAP2{A,C}:0.285541822964;EP300:0.277633606918;HLF:0.277598303097;GFI1:0.276929988215;STAT2,4,6:0.264769030061;NFE2L2:0.250883515219;ZBTB16:0.233904074673;ARID5B:0.219749603507;POU6F1:0.212458525755;MZF1:0.205453542124;MAZ:0.177092546232;SOX17:0.170371971512;PAX4:0.166056003702;FOX{I1,J2}:0.142821462788;MYFfamily:0.125585580698;IRF1,2:0.0874334985248;PDX1:0.0687957911586;PATZ1:0.0671506320128;BACH2:0.00317672935144;POU5F1:-0.00541583088523;LEF1_TCF7_TCF7L1,2:-0.0259452775011;MTF1:-0.0615509959759;HBP1_HMGB_SSRP1_UBTF:-0.0641641494194;REST:-0.102688145962;LMO2:-0.114373956888;STAT1,3:-0.121032292573;RUNX1..3:-0.127987631999;T:-0.139522818129;AR:-0.151107381291;HOXA9_MEIS1:-0.15154186409;NFIX:-0.15543237516;HNF1A:-0.159200374361;NKX2-3_NKX2-5:-0.161530473334;FOS_FOS{B,L1}_JUN{B,D}:-0.177986086084;MED-1{core}:-0.206472168017;DMAP1_NCOR{1,2}_SMARC:-0.224661984614;ZNF143:-0.248667635275;NHLH1,2:-0.27277689441;NRF1:-0.281893537082;HIF1A:-0.285209512971;MEF2{A,B,C,D}:-0.293669171911;TBX4,5:-0.301625516988;bHLH_family:-0.302106164968;NKX6-1,2:-0.314618827138;RFX1:-0.337540442541;HNF4A_NR2F1,2:-0.33958837227;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.34203638233;TOPORS:-0.351256609285;POU1F1:-0.354247314369;PAX3,7:-0.367104125597;PAX8:-0.384050052068;BPTF:-0.399199795435;ELK1,4_GABP{A,B1}:-0.416400096092;PPARG:-0.430895189788;FOSL2:-0.433328378952;EGR1..3:-0.440994114094;E2F1..5:-0.470165245146;AHR_ARNT_ARNT2:-0.48745567439;SP1:-0.493325998921;SNAI1..3:-0.531375875391;NFIL3:-0.535737725552;CDX1,2,4:-0.546896778311;NFKB1_REL_RELA:-0.54870456978;PITX1..3:-0.559126385673;FOXP3:-0.598728787313;NR5A1,2:-0.613514107763;STAT5{A,B}:-0.613594030954;CREB1:-0.617473372441;TLX2:-0.621512769726;SPI1:-0.654034840685;NFE2:-0.676522388177;ZFP161:-0.68966112565;IKZF2:-0.690936342442;ALX1:-0.694745310028;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.702084914395;ADNP_IRX_SIX_ZHX:-0.725675358017;SOX5:-0.728486093871;PAX2:-0.730801659752;ETS1,2:-0.75568119394;TFDP1:-0.763376578733;IRF7:-0.763815741633;FOX{D1,D2}:-0.764535510023;FOXP1:-0.780808498507;SPIB:-0.787089030321;ONECUT1,2:-0.796778229917;TGIF1:-0.816011925335;BREu{core}:-0.839537748434;FOXA2:-0.853770481052;CEBPA,B_DDIT3:-0.867728491395;ESRRA:-0.882503843775;PBX1:-0.969316052662;OCT4_SOX2{dimer}:-0.975828996889;ELF1,2,4:-0.983599848737;ZEB1:-1.00058047336;FOXN1:-1.00827799924;PRRX1,2:-1.01719578241;PAX6:-1.03641120147;SOX{8,9,10}:-1.04797356621;JUN:-1.06720538219;CUX2:-1.12616730568;SREBF1,2:-1.13141856573;NFY{A,B,C}:-1.14066158233;ATF2:-1.14549536082;ATF4:-1.15944073049;GATA6:-1.19183494383;RFX2..5_RFXANK_RFXAP:-1.20573729178;ATF5_CREB3:-1.21483443468;RBPJ:-1.30205343325;MYOD1:-1.32328283788;FOX{F1,F2,J1}:-1.35016998111;RORA:-1.6107463171;SOX2:-1.65213582478;CRX:-1.71258419241;FOXQ1:-1.74337852528;POU2F1..3:-1.75269721579;NANOG:-2.22013055283 | |top_motifs=TAL1_TCF{3,4,12}:2.7966823232;ESR1:2.50940710469;UFEwm:2.49820305039;ALX4:2.31274477025;NKX2-2,8:2.24117549756;EVI1:1.94413707931;HES1:1.86973670703;KLF4:1.80526835151;NR3C1:1.79745510588;GLI1..3:1.79601045201;HOX{A4,D4}:1.6573335967;IKZF1:1.65200806319;FOXL1:1.60006050414;PAX1,9:1.55549326071;RXRA_VDR{dimer}:1.54454514796;EN1,2:1.4650952607;NKX3-1:1.45123186776;ATF6:1.44533892229;MYBL2:1.43026255929;HMGA1,2:1.40224502981;GZF1:1.37394395848;AIRE:1.34259244748;ZNF384:1.33539250967;ZNF238:1.3351312895;NKX3-2:1.30776124933;TP53:1.28589034349;RXR{A,B,G}:1.28149245235;SPZ1:1.1659584255;GCM1,2:1.12914123658;NR6A1:1.11542145516;TFAP4:1.10562830308;TEAD1:1.06975274251;HAND1,2:1.06192213444;NKX2-1,4:1.0443262304;HSF1,2:1.04175265353;NFE2L1:1.04118664025;ZNF423:1.0252408926;FOXO1,3,4:1.02068106276;EBF1:0.98624616765;XBP1:0.982534307494;GATA4:0.965887395997;ZIC1..3:0.939615246654;CDC5L:0.936392973096;HOX{A5,B5}:0.93333365025;TFCP2:0.89051550422;VSX1,2:0.835217173064;ZNF148:0.780790501846;PAX5:0.769422632526;SMAD1..7,9:0.755597656323;NR1H4:0.729100335881;GFI1B:0.725123732774;NANOG{mouse}:0.691777072566;FOXM1:0.690702526141;MAFB:0.653760749909;TBP:0.617194379727;HMX1:0.585314845215;GTF2I:0.581302796923;XCPE1{core}:0.577368741935;POU3F1..4:0.563504228819;TLX1..3_NFIC{dimer}:0.555635068094;PRDM1:0.537147039162;YY1:0.534211325409;LHX3,4:0.486299471528;TEF:0.453953349638;RREB1:0.446387810934;SRF:0.42449580127;HIC1:0.399252617026;HOX{A6,A7,B6,B7}:0.394209151951;GTF2A1,2:0.361787576084;ZBTB6:0.359141151773;MYB:0.350895631398;MTE{core}:0.34365917646;TFAP2B:0.330932486016;FOXD3:0.326181989918;NFATC1..3:0.323754689643;DBP:0.309159613176;TFAP2{A,C}:0.285541822964;EP300:0.277633606918;HLF:0.277598303097;GFI1:0.276929988215;STAT2,4,6:0.264769030061;NFE2L2:0.250883515219;ZBTB16:0.233904074673;ARID5B:0.219749603507;POU6F1:0.212458525755;MZF1:0.205453542124;MAZ:0.177092546232;SOX17:0.170371971512;PAX4:0.166056003702;FOX{I1,J2}:0.142821462788;MYFfamily:0.125585580698;IRF1,2:0.0874334985248;PDX1:0.0687957911586;PATZ1:0.0671506320128;BACH2:0.00317672935144;POU5F1:-0.00541583088523;LEF1_TCF7_TCF7L1,2:-0.0259452775011;MTF1:-0.0615509959759;HBP1_HMGB_SSRP1_UBTF:-0.0641641494194;REST:-0.102688145962;LMO2:-0.114373956888;STAT1,3:-0.121032292573;RUNX1..3:-0.127987631999;T:-0.139522818129;AR:-0.151107381291;HOXA9_MEIS1:-0.15154186409;NFIX:-0.15543237516;HNF1A:-0.159200374361;NKX2-3_NKX2-5:-0.161530473334;FOS_FOS{B,L1}_JUN{B,D}:-0.177986086084;MED-1{core}:-0.206472168017;DMAP1_NCOR{1,2}_SMARC:-0.224661984614;ZNF143:-0.248667635275;NHLH1,2:-0.27277689441;NRF1:-0.281893537082;HIF1A:-0.285209512971;MEF2{A,B,C,D}:-0.293669171911;TBX4,5:-0.301625516988;bHLH_family:-0.302106164968;NKX6-1,2:-0.314618827138;RFX1:-0.337540442541;HNF4A_NR2F1,2:-0.33958837227;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.34203638233;TOPORS:-0.351256609285;POU1F1:-0.354247314369;PAX3,7:-0.367104125597;PAX8:-0.384050052068;BPTF:-0.399199795435;ELK1,4_GABP{A,B1}:-0.416400096092;PPARG:-0.430895189788;FOSL2:-0.433328378952;EGR1..3:-0.440994114094;E2F1..5:-0.470165245146;AHR_ARNT_ARNT2:-0.48745567439;SP1:-0.493325998921;SNAI1..3:-0.531375875391;NFIL3:-0.535737725552;CDX1,2,4:-0.546896778311;NFKB1_REL_RELA:-0.54870456978;PITX1..3:-0.559126385673;FOXP3:-0.598728787313;NR5A1,2:-0.613514107763;STAT5{A,B}:-0.613594030954;CREB1:-0.617473372441;TLX2:-0.621512769726;SPI1:-0.654034840685;NFE2:-0.676522388177;ZFP161:-0.68966112565;IKZF2:-0.690936342442;ALX1:-0.694745310028;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.702084914395;ADNP_IRX_SIX_ZHX:-0.725675358017;SOX5:-0.728486093871;PAX2:-0.730801659752;ETS1,2:-0.75568119394;TFDP1:-0.763376578733;IRF7:-0.763815741633;FOX{D1,D2}:-0.764535510023;FOXP1:-0.780808498507;SPIB:-0.787089030321;ONECUT1,2:-0.796778229917;TGIF1:-0.816011925335;BREu{core}:-0.839537748434;FOXA2:-0.853770481052;CEBPA,B_DDIT3:-0.867728491395;ESRRA:-0.882503843775;PBX1:-0.969316052662;OCT4_SOX2{dimer}:-0.975828996889;ELF1,2,4:-0.983599848737;ZEB1:-1.00058047336;FOXN1:-1.00827799924;PRRX1,2:-1.01719578241;PAX6:-1.03641120147;SOX{8,9,10}:-1.04797356621;JUN:-1.06720538219;CUX2:-1.12616730568;SREBF1,2:-1.13141856573;NFY{A,B,C}:-1.14066158233;ATF2:-1.14549536082;ATF4:-1.15944073049;GATA6:-1.19183494383;RFX2..5_RFXANK_RFXAP:-1.20573729178;ATF5_CREB3:-1.21483443468;RBPJ:-1.30205343325;MYOD1:-1.32328283788;FOX{F1,F2,J1}:-1.35016998111;RORA:-1.6107463171;SOX2:-1.65213582478;CRX:-1.71258419241;FOXQ1:-1.74337852528;POU2F1..3:-1.75269721579;NANOG:-2.22013055283 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11768-123I4;search_select_hide=table117:FF:11768-123I4 | |||
}} | }} | ||
Latest revision as of 18:19, 4 June 2020
| Name: | tenocyte, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12641 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12641
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12641
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.426 |
| 10 | 10 | 0.343 |
| 100 | 100 | 0.686 |
| 101 | 101 | 0.266 |
| 102 | 102 | 0.219 |
| 103 | 103 | 0.218 |
| 104 | 104 | 0.72 |
| 105 | 105 | 0.0397 |
| 106 | 106 | 0.54 |
| 107 | 107 | 0.216 |
| 108 | 108 | 0.176 |
| 109 | 109 | 0.349 |
| 11 | 11 | 0.419 |
| 110 | 110 | 0.179 |
| 111 | 111 | 0.497 |
| 112 | 112 | 0.277 |
| 113 | 113 | 0.385 |
| 114 | 114 | 0.0624 |
| 115 | 115 | 0.0115 |
| 116 | 116 | 0.029 |
| 117 | 117 | 0.921 |
| 118 | 118 | 0.472 |
| 119 | 119 | 1 |
| 12 | 12 | 0.212 |
| 120 | 120 | 0.234 |
| 121 | 121 | 0.736 |
| 122 | 122 | 0.122 |
| 123 | 123 | 0.0149 |
| 124 | 124 | 0.525 |
| 125 | 125 | 0.917 |
| 126 | 126 | 0.991 |
| 127 | 127 | 0.521 |
| 128 | 128 | 0.467 |
| 129 | 129 | 0.731 |
| 13 | 13 | 0.5 |
| 130 | 130 | 0.682 |
| 131 | 131 | 0.201 |
| 132 | 132 | 0.13 |
| 133 | 133 | 0.54 |
| 134 | 134 | 0.599 |
| 135 | 135 | 0.707 |
| 136 | 136 | 0.831 |
| 137 | 137 | 0.894 |
| 138 | 138 | 0.362 |
| 139 | 139 | 0.361 |
| 14 | 14 | 0.265 |
| 140 | 140 | 0.906 |
| 141 | 141 | 0.656 |
| 142 | 142 | 0.895 |
| 143 | 143 | 0.907 |
| 144 | 144 | 0.278 |
| 145 | 145 | 0.696 |
| 146 | 146 | 0.298 |
| 147 | 147 | 0.178 |
| 148 | 148 | 0.903 |
| 149 | 149 | 0.00601 |
| 15 | 15 | 0.891 |
| 150 | 150 | 0.333 |
| 151 | 151 | 0.527 |
| 152 | 152 | 0.153 |
| 153 | 153 | 0.687 |
| 154 | 154 | 0.716 |
| 155 | 155 | 0.129 |
| 156 | 156 | 0.571 |
| 157 | 157 | 0.704 |
| 158 | 158 | 0.0259 |
| 159 | 159 | 0.725 |
| 16 | 16 | 0.0043 |
| 160 | 160 | 0.215 |
| 161 | 161 | 0.693 |
| 162 | 162 | 0.642 |
| 163 | 163 | 0.487 |
| 164 | 164 | 0.152 |
| 165 | 165 | 0.787 |
| 166 | 166 | 0.0739 |
| 167 | 167 | 0.823 |
| 168 | 168 | 0.876 |
| 169 | 169 | 0.011 |
| 17 | 17 | 0.295 |
| 18 | 18 | 0.264 |
| 19 | 19 | 0.0028 |
| 2 | 2 | 0.18 |
| 20 | 20 | 0.56 |
| 21 | 21 | 0.0412 |
| 22 | 22 | 0.15 |
| 23 | 23 | 0.223 |
| 24 | 24 | 0.304 |
| 25 | 25 | 0.72 |
| 26 | 26 | 0.306 |
| 27 | 27 | 0.471 |
| 28 | 28 | 0.19 |
| 29 | 29 | 0.243 |
| 3 | 3 | 0.342 |
| 30 | 30 | 0.443 |
| 31 | 31 | 0.462 |
| 32 | 32 | 3.57833e-19 |
| 33 | 33 | 0.753 |
| 34 | 34 | 0.658 |
| 35 | 35 | 0.942 |
| 36 | 36 | 0.0808 |
| 37 | 37 | 0.0878 |
| 38 | 38 | 0.991 |
| 39 | 39 | 0.11 |
| 4 | 4 | 0.732 |
| 40 | 40 | 0.895 |
| 41 | 41 | 0.554 |
| 42 | 42 | 0.899 |
| 43 | 43 | 0.301 |
| 44 | 44 | 0.0683 |
| 45 | 45 | 0.933 |
| 46 | 46 | 0.194 |
| 47 | 47 | 0.747 |
| 48 | 48 | 0.711 |
| 49 | 49 | 0.776 |
| 5 | 5 | 0.95 |
| 50 | 50 | 0.623 |
| 51 | 51 | 0.509 |
| 52 | 52 | 0.992 |
| 53 | 53 | 0.222 |
| 54 | 54 | 0.447 |
| 55 | 55 | 0.305 |
| 56 | 56 | 0.791 |
| 57 | 57 | 0.832 |
| 58 | 58 | 0.478 |
| 59 | 59 | 0.00754 |
| 6 | 6 | 0.334 |
| 60 | 60 | 0.831 |
| 61 | 61 | 0.998 |
| 62 | 62 | 0.626 |
| 63 | 63 | 0.232 |
| 64 | 64 | 0.905 |
| 65 | 65 | 0.241 |
| 66 | 66 | 0.272 |
| 67 | 67 | 0.776 |
| 68 | 68 | 0.269 |
| 69 | 69 | 0.113 |
| 7 | 7 | 0.389 |
| 70 | 70 | 0.1 |
| 71 | 71 | 0.193 |
| 72 | 72 | 0.567 |
| 73 | 73 | 0.1 |
| 74 | 74 | 0.143 |
| 75 | 75 | 0.481 |
| 76 | 76 | 0.977 |
| 77 | 77 | 0.00521 |
| 78 | 78 | 0.494 |
| 79 | 79 | 1.28636e-4 |
| 8 | 8 | 0.12 |
| 80 | 80 | 0.23 |
| 81 | 81 | 0.411 |
| 82 | 82 | 0.152 |
| 83 | 83 | 0.986 |
| 84 | 84 | 0.329 |
| 85 | 85 | 0.215 |
| 86 | 86 | 0.963 |
| 87 | 87 | 0.614 |
| 88 | 88 | 0.409 |
| 89 | 89 | 0.00843 |
| 9 | 9 | 0.35 |
| 90 | 90 | 0.288 |
| 91 | 91 | 0.504 |
| 92 | 92 | 0.239 |
| 93 | 93 | 0.136 |
| 94 | 94 | 0.268 |
| 95 | 95 | 0.395 |
| 96 | 96 | 0.843 |
| 97 | 97 | 0.742 |
| 98 | 98 | 0.812 |
| 99 | 99 | 0.00191 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12641
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000280 human tenocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000630 (supportive cell)
0000135 (fibrocyte)
0000386 (attachment cell)
0000255 (eukaryotic cell)
0000388 (tendon cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0007846 (dense regular connective tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000043 (tendon)
0007845 (regular connective tissue)
0002204 (musculoskeletal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000280 (human tenocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
