FF:11782-124A9: Difference between revisions

Latest revision as of 18:19, 4 June 2020

Name:	CD4+CD25+CD45RA- memory regulatory T cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13195
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005031

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13195		CAGE		DRX008184		DRR009056

Accession ID Hg19

Library id		BAM		CTSS
CNhs13195		DRZ000481		DRZ001866

Accession ID Hg38

Library id		BAM		CTSS
CNhs13195		DRZ011831		DRZ013216

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	1.086
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.116
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.177
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.275
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.393
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.275
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.201
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.338
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.71
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.382
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.796
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.247
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.112
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0613
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.201
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.442
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.174
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.684
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.486
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.114
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.497
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.614
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.303
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.715
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.112
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.854
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.757
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.562
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.485
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.573
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.809
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.12
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.857
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.269
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0.112
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.112
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13195

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.11912e-5
MA0003.1	MA0003.1	0.729
MA0004.1	MA0004.1	0.871
MA0006.1	MA0006.1	0.205
MA0007.1	MA0007.1	0.958
MA0009.1	MA0009.1	0.0913
MA0014.1	MA0014.1	0.863
MA0017.1	MA0017.1	0.734
MA0018.2	MA0018.2	1.12636e-7
MA0019.1	MA0019.1	0.936
MA0024.1	MA0024.1	0.558
MA0025.1	MA0025.1	0.465
MA0027.1	MA0027.1	0.751
MA0028.1	MA0028.1	2.2847e-4
MA0029.1	MA0029.1	0.158
MA0030.1	MA0030.1	0.0551
MA0031.1	MA0031.1	0.00221
MA0035.2	MA0035.2	0.101
MA0038.1	MA0038.1	0.103
MA0039.2	MA0039.2	0.998
MA0040.1	MA0040.1	0.84
MA0041.1	MA0041.1	0.291
MA0042.1	MA0042.1	0.878
MA0043.1	MA0043.1	0.0249
MA0046.1	MA0046.1	0.214
MA0047.2	MA0047.2	0.217
MA0048.1	MA0048.1	0.859
MA0050.1	MA0050.1	1.13924e-6
MA0051.1	MA0051.1	0.0186
MA0052.1	MA0052.1	0.00169
MA0055.1	MA0055.1	0.931
MA0057.1	MA0057.1	0.58
MA0058.1	MA0058.1	0.783
MA0059.1	MA0059.1	0.672
MA0060.1	MA0060.1	0.225
MA0061.1	MA0061.1	0.0114
MA0062.2	MA0062.2	9.03569e-14
MA0065.2	MA0065.2	0.203
MA0066.1	MA0066.1	0.191
MA0067.1	MA0067.1	0.01
MA0068.1	MA0068.1	0.864
MA0069.1	MA0069.1	0.66
MA0070.1	MA0070.1	0.468
MA0071.1	MA0071.1	0.683
MA0072.1	MA0072.1	0.122
MA0073.1	MA0073.1	0.94
MA0074.1	MA0074.1	0.32
MA0076.1	MA0076.1	6.12756e-6
MA0077.1	MA0077.1	0.0404
MA0078.1	MA0078.1	0.673
MA0079.2	MA0079.2	0.255
MA0080.2	MA0080.2	6.021e-11
MA0081.1	MA0081.1	0.0228
MA0083.1	MA0083.1	0.095
MA0084.1	MA0084.1	0.34
MA0087.1	MA0087.1	0.533
MA0088.1	MA0088.1	0.395
MA0090.1	MA0090.1	9.94479e-5
MA0091.1	MA0091.1	0.684
MA0092.1	MA0092.1	0.979
MA0093.1	MA0093.1	0.985
MA0099.2	MA0099.2	0.0058
MA0100.1	MA0100.1	0.716
MA0101.1	MA0101.1	0.735
MA0102.2	MA0102.2	0.456
MA0103.1	MA0103.1	0.177
MA0104.2	MA0104.2	0.203
MA0105.1	MA0105.1	2.33971e-6
MA0106.1	MA0106.1	0.157
MA0107.1	MA0107.1	0.939
MA0108.2	MA0108.2	9.26537e-8
MA0111.1	MA0111.1	0.186
MA0112.2	MA0112.2	0.359
MA0113.1	MA0113.1	0.663
MA0114.1	MA0114.1	0.793
MA0115.1	MA0115.1	0.559
MA0116.1	MA0116.1	2.03247e-4
MA0117.1	MA0117.1	0.0859
MA0119.1	MA0119.1	0.699
MA0122.1	MA0122.1	0.645
MA0124.1	MA0124.1	0.284
MA0125.1	MA0125.1	0.16
MA0131.1	MA0131.1	0.106
MA0135.1	MA0135.1	0.257
MA0136.1	MA0136.1	4.47701e-23
MA0137.2	MA0137.2	0.751
MA0138.2	MA0138.2	0.274
MA0139.1	MA0139.1	0.0554
MA0140.1	MA0140.1	0.106
MA0141.1	MA0141.1	0.678
MA0142.1	MA0142.1	0.204
MA0143.1	MA0143.1	0.26
MA0144.1	MA0144.1	0.805
MA0145.1	MA0145.1	0.233
MA0146.1	MA0146.1	0.655
MA0147.1	MA0147.1	0.175
MA0148.1	MA0148.1	0.449
MA0149.1	MA0149.1	0.0704
MA0150.1	MA0150.1	0.768
MA0152.1	MA0152.1	0.00803
MA0153.1	MA0153.1	0.123
MA0154.1	MA0154.1	0.0651
MA0155.1	MA0155.1	0.359
MA0156.1	MA0156.1	2.4451e-16
MA0157.1	MA0157.1	9.66724e-4
MA0159.1	MA0159.1	0.292
MA0160.1	MA0160.1	0.795
MA0162.1	MA0162.1	0.943
MA0163.1	MA0163.1	1.33366e-7
MA0164.1	MA0164.1	0.496
MA0258.1	MA0258.1	0.367
MA0259.1	MA0259.1	0.259

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13195

Novel motif	Logo	P-value
1	1	0.305
10	10	0.00816
100	100	0.502
101	101	0.215
102	102	0.732
103	103	0.689
104	104	0.924
105	105	0.252
106	106	0.38
107	107	0.0201
108	108	0.923
109	109	0.114
11	11	0.174
110	110	0.811
111	111	0.531
112	112	0.598
113	113	0.345
114	114	0.288
115	115	0.39
116	116	0.402
117	117	0.00386
118	118	0.315
119	119	0.853
12	12	0.754
120	120	0.922
121	121	0.655
122	122	0.57
123	123	2.3267e-4
124	124	0.319
125	125	0.676
126	126	0.527
127	127	0.821
128	128	0.966
129	129	0.909
13	13	0.367
130	130	0.23
131	131	0.973
132	132	0.287
133	133	0.984
134	134	0.925
135	135	0.981
136	136	0.884
137	137	0.0498
138	138	0.33
139	139	0.0833
14	14	0.503
140	140	0.0501
141	141	0.504
142	142	0.236
143	143	0.00179
144	144	0.995
145	145	0.683
146	146	0.8
147	147	0.0412
148	148	0.0971
149	149	0.558
15	15	0.11
150	150	0.753
151	151	0.528
152	152	0.543
153	153	0.631
154	154	0.464
155	155	0.0175
156	156	0.552
157	157	0.181
158	158	0.0275
159	159	0.242
16	16	0.723
160	160	0.523
161	161	0.805
162	162	0.0688
163	163	0.553
164	164	0.0462
165	165	0.573
166	166	0.355
167	167	0.101
168	168	0.914
169	169	0.751
17	17	0.893
18	18	0.846
19	19	0.231
2	2	0.465
20	20	0.372
21	21	0.676
22	22	0.536
23	23	0.605
24	24	0.674
25	25	0.0775
26	26	0.299
27	27	0.649
28	28	0.578
29	29	0.00613
3	3	0.177
30	30	0.0906
31	31	0.869
32	32	0.146
33	33	0.168
34	34	0.344
35	35	0.217
36	36	0.0212
37	37	0.171
38	38	0.97
39	39	0.329
4	4	0.843
40	40	0.425
41	41	0.148
42	42	0.115
43	43	0.378
44	44	0.719
45	45	0.283
46	46	0.312
47	47	0.133
48	48	0.26
49	49	0.123
5	5	0.386
50	50	0.415
51	51	0.724
52	52	0.474
53	53	0.469
54	54	0.931
55	55	0.936
56	56	0.911
57	57	0.481
58	58	0.104
59	59	0.894
6	6	0.993
60	60	0.441
61	61	0.122
62	62	0.122
63	63	0.895
64	64	0.442
65	65	0.885
66	66	0.702
67	67	0.997
68	68	0.888
69	69	0.862
7	7	0.293
70	70	0.0598
71	71	0.0272
72	72	0.0522
73	73	0.48
74	74	0.891
75	75	0.0144
76	76	0.0912
77	77	0.0426
78	78	0.12
79	79	0.576
8	8	0.866
80	80	0.0579
81	81	0.342
82	82	0.0892
83	83	0.826
84	84	0.383
85	85	0.986
86	86	0.154
87	87	0.876
88	88	0.918
89	89	0.121
9	9	0.815
90	90	0.0163
91	91	0.633
92	92	0.365
93	93	0.995
94	94	0.176
95	95	0.0296
96	96	0.277
97	97	0.306
98	98	0.11
99	99	2.53403e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13195

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002677 naive regulatory T cell
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
0000815 (regulatory T cell)
0000898 (naive T cell)
0000792 (CD4-positive, CD25-positive, alpha-beta regulatory T cell)
0002677 (naive regulatory T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005031
-|accession_numbers=CAGE;DRX008184;DRR009056;DRZ000481;DRZ001866
+|accession_numbers=CAGE;DRX008184;DRR009056;DRZ000481;DRZ001866;DRZ011831;DRZ013216
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624,CL:0000815,CL:0000898,CL:0000792,CL:0002677
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.37!234.21!FOXP3;;chr6:106546808..106546833,+!p3@PRDM1!1.98!119.02!PRDM1;;chr10:35484053..35484076,+!p1@CREM!1.96!215.65!CREM;;chr3:63953435..63953499,+!p1@ATXN7!1.85!70.12!ATXN7;;chr1:25256756..25256774,-!p1@RUNX3!1.82!118.73!RUNX3;;chr10:8096631..8096660,+!p1@GATA3!1.76!68.05!GATA3;;chrX:106960285..106960299,-!p1@TSC22D3!1.71!1260.62!TSC22D3;;chr3:71355163..71355209,-!p5@FOXP1!1.71!69.23!FOXP1;;chr19:54058073..54058088,+!p1@ZNF331!1.71!50.08!ZNF331;;chr19:54041669..54041697,+!p2@ZNF331!1.70!49.49!ZNF331;;chr10:35484090..35484104,+!p6@CREM!1.70!48.61!CREM;;chr6:106546834..106546850,+!p4@PRDM1!1.67!46.25!PRDM1;;chr2:231090433..231090469,+!p1@SP140!1.66!44.19!SP140;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.90!IKZF1;;chr4:109087445..109087463,-!p1@LEF1!1.62!40.66!LEF1;;chr15:60884706..60884743,-!p1@RORA!1.59!187.37!RORA;;chr6:391743..391759,+!p1@IRF4!1.59!38.30!IRF4;;chr14:75988771..75988826,+!p1@BATF!1.55!45.66!BATF;;chr19:16435625..16435682,+!p1@KLF2!1.54!1022.87!KLF2;;chrY:21906594..21906622,-!p1@KDM5D!1.54!33.29!KDM5D;;chr2:157189180..157189290,-!p1@NR4A2!1.53!166.45!NR4A2;;chr17:37934365..37934387,-!p2@IKZF3!1.49!30.05!IKZF3;;chr8:60031619..60031676,-!p1@TOX!1.48!61.87!TOX;;chr14:75988831..75988847,+!p2@BATF!1.48!28.87!BATF;;chr10:35416142..35416169,+!p3@CREM!1.43!67.46!CREM;;chr2:192015701..192015743,-!p1@STAT4!1.43!35.35!STAT4;;chr20:56195474..56195506,-!p1@ZBP1!1.40!24.16!ZBP1;;chr2:192015750..192015793,-!p2@STAT4!1.39!31.23!STAT4;;chr19:19779619..19779670,+!p1@ZNF101!1.38!63.93!ZNF101;;chr9:117150254..117150271,-!p1@AKNA!1.37!59.51!AKNA;;chr9:102584262..102584276,+!p1@NR4A3!1.37!49.20!NR4A3;;chr2:231090471..231090504,+!p2@SP140!1.35!21.21!SP140;;chr19:12902289..12902307,+!p1@JUNB!1.33!4465.64!JUNB;;chr6:106546786..106546802,+!p6@PRDM1!1.33!20.33!PRDM1;;chr4:109089901..109089930,-!p3@LEF1!1.30!18.85!LEF1;;chr19:19729477..19729542,-!p1@PBX4!1.25!35.35!PBX4;;chr17:37934204..37934241,-!p3@IKZF3!1.25!16.79!IKZF3;;chr4:109090075..109090095,-!p2@LEF1!1.25!16.79!LEF1;;chr9:3525727..3525828,-!p2@RFX3!1.24!41.83!RFX3;;chr3:71542615..71542644,-!p12@FOXP1!1.24!16.20!FOXP1;;chr7:50343895..50343936,+!p5@IKZF1!1.24!16.20!IKZF1;;chr6:12009042..12009092,+!p6@HIVEP1!1.23!20.92!HIVEP1;;chr11:128392273..128392308,-!p2@ETS1!1.22!64.81!ETS1;;chr6:91006518..91006570,-!p1@BACH2!1.21!35.06!BACH2;;chr10:8096772..8096787,+!p2@GATA3!1.21!17.97!GATA3;;chr13:41593425..41593480,-!p1@ELF1!1.20!92.21!ELF1;;chr4:109088089..109088101,-!p11@LEF1!1.20!15.02!LEF1;;chr19:36204309..36204335,+!p1@ZBTB32!1.19!14.44!ZBTB32;;chr17:38497662..38497713,+!p4@RARA!1.17!16.20!RARA;;chr20:56195525..56195556,-!p2@ZBP1!1.16!13.55!ZBP1;;chr11:128392085..128392232,-!p1@ETS1!1.14!424.82!ETS1;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.56!NFATC2;;chr14:99738138..99738163,-!p1@BCL11B!1.14!12.96!BCL11B;;chr2:97202991..97203043,+!p3@ARID5A!1.14!12.67!ARID5A;;chr6:106546731..106546755,+!p5@PRDM1!1.14!12.67!PRDM1;;chr1:45805693..45805718,+!p3@TOE1!1.13!26.81!TOE1;;chr10:35485013..35485034,+!p15@CREM!1.12!12.08!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.12!12.08!IKZF2;;chr21:36421535..36421610,-!p2@RUNX1!1.11!42.72!RUNX1;;chr9:102584241..102584261,+!p4@NR4A3!1.11!18.56!NR4A3;;chr19:45971246..45971265,+!p1@FOSB!1.10!216.24!FOSB;;chr5:133450365..133450444,+!p1@TCF7!1.09!51.85!TCF7;;chr4:109088130..109088163,-!p13@LEF1!1.09!11.20!LEF1;;chr11:128563948..128564003,+!p1@FLI1!1.08!134.63!FLI1;;chr14:75745523..75745537,+!p1@FOS!1.06!1270.34!FOS;;chrX:106960180..106960197,-!p2@TSC22D3!1.06!40.66!TSC22D3;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.61!IKZF1;;chr12:72056800..72056834,+!p1@THAP2!1.05!13.85!THAP2;;chr10:35416223..35416234,+!p12@CREM!1.05!10.31!CREM;;chr7:77428066..77428132,+!p2@PHTF2!1.04!65.40!PHTF2;;chr2:208394817..208394834,+!p3@CREB1!1.04!40.66!CREB1;;chr16:79634624..79634642,-!p1@MAF!1.04!39.48!MAF;;chr4:109088940..109089037,-!p4@LEF1!1.04!10.02!LEF1;;chr10:35416172..35416184,+!p13@CREM!1.04!10.02!CREM;;chr4:38665769..38665801,+!p2@KLF3!1.03!88.97!KLF3;;chr13:41240717..41240735,-!p2@FOXO1!1.03!66.58!FOXO1;;chr3:23986824..23986848,+!p2@NR1D2!1.02!53.91!NR1D2;;chr14:64971288..64971316,-!p2@ZBTB25!1.02!29.46!ZBTB25;;chr14:64970670..64970712,-!p3@ZBTB25!1.02!20.92!ZBTB25;;chr16:79634595..79634620,-!p2@MAF!1.02!17.38!MAF;;chr10:3824332..3824425,-!p4@KLF6!1.02!15.61!KLF6;;chr3:71542684..71542720,-!p18@FOXP1!1.02!9.43!FOXP1;;chr2:157189617..157189667,-!p4@NR4A2!1.01!9.13!NR4A2;;chr2:97202480..97202499,+!p1@ARID5A!1.00!93.98!ARID5A;;chr19:19779686..19779697,+!p3@ZNF101!0.99!10.31!ZNF101;;chr17:37934280..37934299,-!p6@IKZF3!0.99!8.84!IKZF3;;chr8:60031563..60031574,-!p7@TOX!0.99!8.84!TOX;;chr15:60884747..60884774,-!p3@RORA!0.98!21.51!RORA;;chrX:106960221..106960236,-!p3@TSC22D3!0.97!23.86!TSC22D3;;chr17:56565257..56565283,-!p2@HSF5!0.97!8.25!HSF5;;chr19:54040550..54040594,+!p20@ZNF331!0.97!8.25!ZNF331;;chr10:63809013..63809041,+!p3@ARID5B!0.95!45.66!ARID5B;;chr12:56418637..56418648,+!p9@IKZF4!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13195.11782-124A9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11782-124A9
 |is_a=CL:0002677;;EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
 |library_id=CNhs13195
-|library_id_phase_based=1:CNhs13195
+|library_id_phase_based=2:CNhs13195
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11782
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11782
 |name=CD4+CD25+CD45RA- memory regulatory T cells, donor1
 |namespace=
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13195,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11782-124A9;search_select_hide=table117:FF:11782-124A9
 }}

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FF:11782-124A9: Difference between revisions

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Latest revision as of 18:19, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0