FF:11794-124C3: Difference between revisions

Latest revision as of 18:20, 4 June 2020

Name:	CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13204
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	25
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	17
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005636

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13204		CAGE		DRX008181		DRR009053

Accession ID Hg19

Library id		BAM		CTSS
CNhs13204		DRZ000478		DRZ001863

Accession ID Hg38

Library id		BAM		CTSS
CNhs13204		DRZ011828		DRZ013213

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.408
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.216
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0459
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.125
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0193
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.621
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0459
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.125
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.337
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.216
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.763
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.347
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.125
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0612
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.0459
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.125
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.093
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.125
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.916
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.45
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.469
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.609
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0874
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.33
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.628
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.478
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.249
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0791
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.264
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.242
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0229
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.774
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.853
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0874
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0874
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13204

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.27919e-9
MA0003.1	MA0003.1	0.507
MA0004.1	MA0004.1	0.671
MA0006.1	MA0006.1	0.704
MA0007.1	MA0007.1	0.526
MA0009.1	MA0009.1	0.182
MA0014.1	MA0014.1	0.97
MA0017.1	MA0017.1	0.0397
MA0018.2	MA0018.2	0.252
MA0019.1	MA0019.1	0.96
MA0024.1	MA0024.1	0.726
MA0025.1	MA0025.1	0.243
MA0027.1	MA0027.1	0.935
MA0028.1	MA0028.1	4.391e-5
MA0029.1	MA0029.1	0.409
MA0030.1	MA0030.1	0.869
MA0031.1	MA0031.1	0.313
MA0035.2	MA0035.2	0.0252
MA0038.1	MA0038.1	0.0543
MA0039.2	MA0039.2	0.967
MA0040.1	MA0040.1	0.552
MA0041.1	MA0041.1	0.741
MA0042.1	MA0042.1	0.885
MA0043.1	MA0043.1	0.387
MA0046.1	MA0046.1	0.144
MA0047.2	MA0047.2	0.389
MA0048.1	MA0048.1	0.643
MA0050.1	MA0050.1	2.73589e-8
MA0051.1	MA0051.1	0.00357
MA0052.1	MA0052.1	0.00109
MA0055.1	MA0055.1	0.625
MA0057.1	MA0057.1	0.852
MA0058.1	MA0058.1	0.958
MA0059.1	MA0059.1	0.518
MA0060.1	MA0060.1	0.528
MA0061.1	MA0061.1	6.84243e-4
MA0062.2	MA0062.2	1.93075e-15
MA0065.2	MA0065.2	0.0232
MA0066.1	MA0066.1	0.218
MA0067.1	MA0067.1	0.424
MA0068.1	MA0068.1	0.154
MA0069.1	MA0069.1	0.364
MA0070.1	MA0070.1	0.776
MA0071.1	MA0071.1	0.431
MA0072.1	MA0072.1	0.328
MA0073.1	MA0073.1	0.712
MA0074.1	MA0074.1	0.968
MA0076.1	MA0076.1	6.38725e-8
MA0077.1	MA0077.1	0.0131
MA0078.1	MA0078.1	0.911
MA0079.2	MA0079.2	0.568
MA0080.2	MA0080.2	2.17815e-13
MA0081.1	MA0081.1	0.0148
MA0083.1	MA0083.1	0.31
MA0084.1	MA0084.1	0.933
MA0087.1	MA0087.1	0.464
MA0088.1	MA0088.1	0.126
MA0090.1	MA0090.1	9.26151e-5
MA0091.1	MA0091.1	0.751
MA0092.1	MA0092.1	0.686
MA0093.1	MA0093.1	0.697
MA0099.2	MA0099.2	0.103
MA0100.1	MA0100.1	0.246
MA0101.1	MA0101.1	0.121
MA0102.2	MA0102.2	0.702
MA0103.1	MA0103.1	0.0833
MA0104.2	MA0104.2	0.394
MA0105.1	MA0105.1	1.26667e-7
MA0106.1	MA0106.1	0.891
MA0107.1	MA0107.1	0.212
MA0108.2	MA0108.2	2.12172e-10
MA0111.1	MA0111.1	0.0619
MA0112.2	MA0112.2	0.0625
MA0113.1	MA0113.1	0.553
MA0114.1	MA0114.1	0.139
MA0115.1	MA0115.1	0.71
MA0116.1	MA0116.1	3.96116e-6
MA0117.1	MA0117.1	0.511
MA0119.1	MA0119.1	0.378
MA0122.1	MA0122.1	0.872
MA0124.1	MA0124.1	0.554
MA0125.1	MA0125.1	0.655
MA0131.1	MA0131.1	0.468
MA0135.1	MA0135.1	0.195
MA0136.1	MA0136.1	8.74158e-26
MA0137.2	MA0137.2	0.0167
MA0138.2	MA0138.2	0.475
MA0139.1	MA0139.1	0.00691
MA0140.1	MA0140.1	0.0393
MA0141.1	MA0141.1	0.568
MA0142.1	MA0142.1	0.503
MA0143.1	MA0143.1	0.179
MA0144.1	MA0144.1	0.0786
MA0145.1	MA0145.1	0.803
MA0146.1	MA0146.1	0.263
MA0147.1	MA0147.1	0.363
MA0148.1	MA0148.1	0.87
MA0149.1	MA0149.1	0.131
MA0150.1	MA0150.1	0.869
MA0152.1	MA0152.1	0.0378
MA0153.1	MA0153.1	0.275
MA0154.1	MA0154.1	0.00616
MA0155.1	MA0155.1	0.877
MA0156.1	MA0156.1	6.92387e-24
MA0157.1	MA0157.1	0.108
MA0159.1	MA0159.1	0.105
MA0160.1	MA0160.1	0.24
MA0162.1	MA0162.1	0.533
MA0163.1	MA0163.1	4.28765e-12
MA0164.1	MA0164.1	0.612
MA0258.1	MA0258.1	0.0705
MA0259.1	MA0259.1	0.587

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13204

Novel motif	Logo	P-value
1	1	0.131
10	10	0.0149
100	100	0.811
101	101	0.22
102	102	0.575
103	103	0.0787
104	104	0.673
105	105	0.14
106	106	0.349
107	107	0.399
108	108	0.663
109	109	0.0409
11	11	0.027
110	110	0.456
111	111	0.279
112	112	0.0682
113	113	0.575
114	114	0.102
115	115	0.341
116	116	0.789
117	117	0.00275
118	118	0.372
119	119	0.715
12	12	0.439
120	120	0.205
121	121	0.4
122	122	0.21
123	123	0.0118
124	124	0.14
125	125	0.783
126	126	0.208
127	127	0.362
128	128	0.725
129	129	0.329
13	13	0.487
130	130	0.88
131	131	0.805
132	132	0.821
133	133	0.35
134	134	0.843
135	135	0.638
136	136	0.591
137	137	0.0237
138	138	0.146
139	139	0.112
14	14	0.309
140	140	0.0705
141	141	0.478
142	142	0.941
143	143	2.59906e-4
144	144	0.419
145	145	0.261
146	146	0.58
147	147	0.0346
148	148	0.0462
149	149	0.804
15	15	0.086
150	150	0.452
151	151	0.649
152	152	0.717
153	153	0.883
154	154	0.789
155	155	0.029
156	156	0.608
157	157	0.0683
158	158	0.431
159	159	0.273
16	16	0.475
160	160	0.558
161	161	0.229
162	162	0.0848
163	163	0.536
164	164	0.145
165	165	0.244
166	166	0.659
167	167	0.562
168	168	0.258
169	169	0.22
17	17	0.826
18	18	0.383
19	19	0.779
2	2	0.911
20	20	0.742
21	21	0.461
22	22	0.965
23	23	0.803
24	24	0.729
25	25	0.0701
26	26	0.114
27	27	0.14
28	28	0.426
29	29	0.00715
3	3	0.0381
30	30	0.224
31	31	0.996
32	32	0.55
33	33	0.411
34	34	0.951
35	35	0.194
36	36	0.0212
37	37	0.129
38	38	0.648
39	39	0.409
4	4	0.961
40	40	0.293
41	41	0.355
42	42	0.0631
43	43	0.34
44	44	0.228
45	45	0.667
46	46	0.0771
47	47	0.00567
48	48	0.0393
49	49	0.209
5	5	0.448
50	50	0.66
51	51	0.527
52	52	0.332
53	53	0.468
54	54	0.8
55	55	0.73
56	56	0.484
57	57	0.43
58	58	0.094
59	59	0.171
6	6	0.739
60	60	0.385
61	61	0.0999
62	62	0.0364
63	63	0.645
64	64	0.159
65	65	0.816
66	66	0.952
67	67	0.71
68	68	0.762
69	69	0.798
7	7	0.244
70	70	0.0265
71	71	0.0191
72	72	0.016
73	73	0.359
74	74	0.297
75	75	0.0185
76	76	0.412
77	77	0.721
78	78	0.0492
79	79	0.488
8	8	0.544
80	80	0.0271
81	81	0.352
82	82	0.0548
83	83	0.912
84	84	0.264
85	85	0.731
86	86	0.13
87	87	0.191
88	88	0.683
89	89	0.931
9	9	0.586
90	90	0.034
91	91	0.562
92	92	0.388
93	93	0.29
94	94	0.0985
95	95	0.0146
96	96	0.0351
97	97	0.324
98	98	0.35
99	99	0.0399

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13204

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005636
+|accession_numbers=CAGE;DRX008181;DRR009053;DRZ000478;DRZ001863;DRZ011828;DRZ013213
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:49121165..49121179,-!p1@FOXP3!2.22!163.10!FOXP3;;chr10:8096631..8096660,+!p1@GATA3!2.03!128.01!GATA3;;chr10:8096772..8096787,+!p2@GATA3!2.01!119.10!GATA3;;chr2:231090433..231090469,+!p1@SP140!1.93!84.45!SP140;;chr7:50343634..50343717,+!p2@IKZF1!1.80!62.06!IKZF1;;chr10:35484053..35484076,+!p1@CREM!1.75!134.58!CREM;;chr14:75988831..75988847,+!p2@BATF!1.69!48.35!BATF;;chr14:75988771..75988826,+!p1@BATF!1.68!61.39!BATF;;chr2:192015701..192015743,-!p1@STAT4!1.66!60.50!STAT4;;chr2:231090471..231090504,+!p2@SP140!1.65!43.34!SP140;;chr3:12330560..12330579,+!p1@PPARG!1.64!48.24!PPARG;;chr2:192015750..192015793,-!p2@STAT4!1.60!52.14!STAT4;;chr17:37934365..37934387,-!p2@IKZF3!1.53!32.53!IKZF3;;chr16:79634624..79634642,-!p1@MAF!1.52!120.99!MAF;;chr6:391743..391759,+!p1@IRF4!1.52!32.31!IRF4;;chr9:117150254..117150271,-!p1@AKNA!1.50!82.44!AKNA;;chr16:79634595..79634620,-!p2@MAF!1.49!53.37!MAF;;chrY:21906594..21906622,-!p1@KDM5D!1.48!28.97!KDM5D;;chr7:50344251..50344288,+!p3@IKZF1!1.46!28.08!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.46!27.52!ZBP1;;chr16:68119324..68119364,+!p1@NFATC3!1.45!117.98!NFATC3;;chr6:106546808..106546833,+!p3@PRDM1!1.45!34.43!PRDM1;;chr10:8095593..8095625,+!p3@GATA3!1.40!28.52!GATA3;;chr7:50348268..50348366,+!p4@IKZF1!1.40!24.18!IKZF1;;chr7:50343895..50343936,+!p5@IKZF1!1.39!23.40!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.39!23.40!IKZF3;;chr7:50344289..50344323,+!p1@IKZF1!1.38!23.06!IKZF1;;chr15:60884706..60884743,-!p1@RORA!1.36!110.52!RORA;;chr1:25256756..25256774,-!p1@RUNX3!1.36!40.78!RUNX3;;chr20:50159198..50159299,-!p1@NFATC2!1.36!31.97!NFATC2;;chr3:18480217..18480239,-!p3@SATB1!1.36!22.17!SATB1;;chr3:18486354..18486377,-!p2@SATB1!1.33!25.62!SATB1;;chr3:63953435..63953499,+!p1@ATXN7!1.30!19.05!ATXN7;;chr1:92951607..92951661,-!p1@GFI1!1.30!18.83!GFI1;;chr13:41593425..41593480,-!p1@ELF1!1.28!111.08!ELF1;;chr19:19779619..19779670,+!p1@ZNF101!1.27!49.02!ZNF101;;chr4:57522674..57522699,-!p5@HOPX!1.25!16.60!HOPX;;chr19:16435625..16435682,+!p1@KLF2!1.24!519.84!KLF2;;chr8:60031619..60031676,-!p1@TOX!1.24!35.32!TOX;;chr19:19729477..19729542,-!p1@PBX4!1.22!33.20!PBX4;;chr17:38020392..38020477,-!p1@IKZF3!1.20!14.93!IKZF3;;chr4:57522598..57522664,-!p3@HOPX!1.19!14.48!HOPX;;chr10:35484090..35484104,+!p6@CREM!1.18!14.26!CREM;;chr17:45810594..45810608,+!p1@TBX21!1.17!13.81!TBX21;;chr4:185395633..185395651,-!p2@IRF2!1.16!21.73!IRF2;;chr20:56195525..56195556,-!p2@ZBP1!1.16!13.48!ZBP1;;chr11:128563948..128564003,+!p1@FLI1!1.13!148.18!FLI1;;chr12:56415246..56415286,+!p2@IKZF4!1.13!12.37!IKZF4;;chr16:88752889..88752921,-!p1@SNAI3!1.11!13.81!SNAI3;;chr7:137620650..137620677,-!p3@CREB3L2!1.11!11.92!CREB3L2;;chr7:77428066..77428132,+!p2@PHTF2!1.10!74.65!PHTF2;;chr19:36204309..36204335,+!p1@ZBTB32!1.10!11.70!ZBTB32;;chr4:57522166..57522260,-!p2@HOPX!1.09!13.15!HOPX;;chr16:79633894..79633954,-!p3@MAF!1.03!19.16!MAF;;chr3:141105705..141105770,+!p4@ZBTB38!1.02!11.48!ZBTB38;;chr19:19779686..19779697,+!p3@ZNF101!1.02!11.03!ZNF101;;chr17:37934280..37934299,-!p6@IKZF3!1.02!9.58!IKZF3;;chr1:158978768..158978800,+!p8@IFI16!1.02!9.47!IFI16;;chr6:106546834..106546850,+!p4@PRDM1!1.01!9.25!PRDM1;;chr1:23857698..23857733,-!p1@E2F2!1.00!16.82!E2F2;;chr6:106546731..106546755,+!p5@PRDM1!1.00!9.02!PRDM1;;chr11:47236584..47236679,+!p1@DDB2!0.99!97.48!DDB2;;chr10:35484804..35484902,+!p2@CREM!0.99!34.65!CREM;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.36!ZFY;;chr16:79634581..79634592,-!p4@MAF!0.97!8.24!MAF;;chr6:45390300..45390335,+!p4@RUNX2!0.96!12.92!RUNX2;;chr10:8097321..8097348,+!p4@GATA3!0.96!8.02!GATA3;;chr12:56415287..56415300,+!p5@IKZF4!0.94!7.69!IKZF4;;chr10:104154246..104154347,+!p3@NFKB2!0.93!48.24!NFKB2;;chr19:4153613..4153652,+!p1@CREB3L3!0.93!7.58!CREB3L3;;chr2:231090344..231090361,-!p3@SP110!0.93!7.46!SP110;;chr17:38020516..38020544,-!p5@IKZF3!0.92!7.35!IKZF3;;chr1:92949331..92949377,-!p2@GFI1!0.92!7.24!GFI1;;chr11:128392085..128392232,-!p1@ETS1!0.91!250.12!ETS1;;chr6:45390269..45390298,+!p5@RUNX2!0.91!12.03!RUNX2;;chr10:8100691..8100732,+!p5@GATA3!0.91!7.13!GATA3;;chr7:137620684..137620711,-!p4@CREB3L2!0.90!7.02!CREB3L2;;chr21:36421147..36421193,-!p10@RUNX1!0.90!7.02!RUNX1;;chr6:106547079..106547114,+!p9@PRDM1!0.90!6.91!PRDM1;;chr1:158979686..158979745,+!p1@IFI16!0.89!235.52!IFI16;;chr20:52226313..52226350,-!p3@ZNF217!0.89!6.80!ZNF217;;chr1:25291475..25291511,-!p2@RUNX3!0.89!6.68!RUNX3;;chr2:242556880..242556899,-!p5@THAP4!0.89!6.68!THAP4;;chr6:15249128..15249177,+!p4@JARID2!0.88!12.26!JARID2;;chr4:57522513..57522548,-!p4@HOPX!0.88!6.57!HOPX;;chr6:106534230..106534254,+!p2@PRDM1!0.87!16.71!PRDM1;;chr6:106546786..106546802,+!p6@PRDM1!0.87!6.46!PRDM1;;chr2:242556900..242556916,-!p6@THAP4!0.87!6.35!THAP4;;chr10:35416142..35416169,+!p3@CREM!0.86!17.38!CREM;;chr4:185395590..185395627,-!p3@IRF2!0.85!7.69!IRF2;;chr16:88752861..88752884,-!p2@SNAI3!0.85!6.13!SNAI3;;chr7:64838786..64838809,+!p2@ZNF92!0.84!35.65!ZNF92;;chr2:238600933..238600985,+!p3@LRRFIP1!0.84!34.31!LRRFIP1;;chr21:36421535..36421610,-!p2@RUNX1!0.84!22.50!RUNX1;;chr17:1959369..1959388,+!p2@HIC1!0.84!16.27!HIC1;;chr11:113930425..113930471,+!p1@ZBTB16!0.84!8.80!ZBTB16;;chr2:148778973..148779035,+!p3@MBD5!0.82!15.49!MBD5;;chr3:71355163..71355209,-!p5@FOXP1!0.82!7.91!FOXP1;;chr7:50343864..50343888,+!p7@IKZF1!0.82!5.68!IKZF1;;chr11:128392273..128392308,-!p2@ETS1!0.81!24.96!ETS1;;chr3:71179699..71179744,-!p2@FOXP1!0.80!43.23!FOXP1;;chr6:135502501..135502546,+!p1@MYB!0.80!6.57!MYB;;chr2:231084659..231084721,-!p1@SP110!0.79!133.14!SP110;;chr6:106534192..106534224,+!p1@PRDM1!0.79!15.49!PRDM1;;chr1:44679370..44679422,+!p3@DMAP1!0.78!6.91!DMAP1;;chr6:45390599..45390662,+!p11@RUNX2!0.78!6.24!RUNX2;;chr14:75988851..75988862,+!p3@BATF!0.78!5.01!BATF;;chr17:38020557..38020572,-!p4@IKZF3!0.78!5.01!IKZF3;;chr16:68118689..68118733,+!p3@NFATC3!0.77!13.15!NFATC3;;chr10:3824332..3824425,-!p4@KLF6!0.77!8.24!KLF6;;chr2:214013461..214013517,-!p6@IKZF2!0.77!4.90!IKZF2;;chr2:214015343..214015366,-!p3@IKZF2!0.74!4.46!IKZF2;;chr16:31885093..31885165,+!p1@ZNF267!0.73!75.09!ZNF267;;chr11:67007548..67007610,+!p3@KDM2A!0.73!35.99!KDM2A;;chr10:63809013..63809041,+!p3@ARID5B!0.73!27.30!ARID5B;;chr19:42636586..42636607,-!p1@POU2F2!0.73!13.26!POU2F2;;chr12:72056800..72056834,+!p1@THAP2!0.73!6.13!THAP2;;chr3:18480173..18480189,-!p6@SATB1!0.73!4.35!SATB1;;chr3:27763807..27763822,-!p1@EOMES!0.73!4.35!EOMES;;chr5:131826457..131826514,-!p1@IRF1!0.72!190.18!IRF1;;chr15:60884747..60884774,-!p3@RORA!0.72!11.36!RORA;;chrY:21906623..21906637,-!p3@KDM5D!0.72!4.23!KDM5D;;chr7:21467802..21467840,+!p3@SP4!0.71!9.14!SP4;;chr11:67007611..67007622,+!p6@KDM2A!0.71!5.79!KDM2A;;chr13:41593493..41593506,-!p8@ELF1!0.71!4.12!ELF1;;chr10:104155480..104155534,+!p2@NFKB2!0.70!29.41!NFKB2;;chr3:18466787..18466839,-!p1@SATB1!0.70!20.17!SATB1;;chr2:208394817..208394834,+!p3@CREB1!0.70!18.16!CREB1;;chr2:178128250..178128293,-!p6@NFE2L2!0.70!11.14!NFE2L2;;chr6:29648890..29648944,-!p1@ZFP57!0.70!4.01!ZFP57;;chr21:36421347..36421380,-!p8@RUNX1!0.70!4.01!RUNX1;;chr7:77428149..77428220,+!p1@PHTF2!0.69!45.34!PHTF2;;chr16:68119440..68119480,+!p4@NFATC3!0.69!6.91!NFATC3;;chr2:192015677..192015691,-!p3@STAT4!0.69!3.90!STAT4;;chr4:57522701..57522712,-!p10@HOPX!0.69!3.90!HOPX;;chr8:71316428..71316459,-!p2@NCOA2!0.68!6.80!NCOA2;;chr11:113930291..113930339,+!p2@ZBTB16!0.68!6.68!ZBTB16;;chr7:50344144..50344157,+!p6@IKZF1!0.68!3.79!IKZF1;;chr17:37934188..37934202,-!p8@IKZF3!0.68!3.79!IKZF3;;chr3:18487057..18487105,-!p4@SATB1!0.67!3.68!SATB1;;chr1:151798546..151798590,-!p2@RORC!0.67!3.68!RORC;;chr7:99156393..99156433,+!p6@ZNF655!0.66!8.91!ZNF655;;chr1:151319654..151319698,-!p2@RFX5!0.66!8.69!RFX5;;chr6:36355431..36355466,-!p1@ETV7!0.66!3.57!ETV7;;chr7:148982396..148982408,+!p4@ZNF783!0.66!3.57!ZNF783;;chr14:99738138..99738163,-!p1@BCL11B!0.66!3.57!BCL11B;;chr7:148892557..148892580,+!p4@ZNF282!0.65!10.81!ZNF282;;chr4:185395191..185395226,-!p4@IRF2!0.65!5.12!IRF2;;chr11:47237922..47237964,+!p4@DDB2!0.65!4.12!DDB2;;chr5:321810..321877,+!p1@AHRR!0.64!12.26!AHRR;;chr19:45972701..45972774,+!p2@FOSB!0.64!4.79!FOSB;;chr3:18466660..18466676,-!p5@SATB1!0.64!4.12!SATB1;;chr16:89789271..89789291,+!p5@ZNF276!0.64!3.34!ZNF276;;chr17:56565257..56565283,-!p2@HSF5!0.64!3.34!HSF5;;chr14:90085458..90085557,-!p1@FOXN3!0.63!40.66!FOXN3;;chr11:85375237..85375277,-!p4@CREBZF!0.63!3.90!CREBZF;;chr14:65569101..65569119,-!p3@MAX!0.62!11.70!MAX;;chr9:3525727..3525828,-!p2@RFX3!0.62!9.14!RFX3;;chr10:64576105..64576133,-!p1@EGR2!0.62!7.24!EGR2;;chr4:81104895..81104920,+!p2@PRDM8!0.62!5.12!PRDM8;;chr6:36355513..36355578,-!p2@ETV7!0.62!4.12!ETV7;;chr19:49140609..49140643,-!p1@DBP!0.61!20.61!DBP;;chr9:3525867..3525902,-!p3@RFX3!0.61!12.26!RFX3;;chr19:52674696..52674758,-!p1@ZNF836!0.61!10.47!ZNF836;;chr6:109804367..109804402,-!p2@ZBTB24!0.61!10.14!ZBTB24;;chr3:71542684..71542720,-!p18@FOXP1!0.61!3.12!FOXP1;;chr17:46621146..46621180,-!p10@HOXB2!0.61!3.12!HOXB2;;chr7:21467674..21467727,+!p1@SP4!0.60!13.81!SP4;;chr1:154975110..154975149,+!p2@ZBTB7B!0.60!7.02!ZBTB7B;;chr8:71053850..71053871,-!p22@NCOA2!0.60!3.01!NCOA2;;chr15:31619326..31619390,+!p2@KLF13!0.59!40.55!KLF13;;chrX:134477924..134477988,-!p1@ZNF75D!0.59!12.92!ZNF75D;;chr6:126102292..126102329,+!p3@NCOA7!0.59!11.25!NCOA7;;chr17:36861735..36861755,+!p4@MLLT6!0.59!5.46!MLLT6;;chr8:67525443..67525459,-!p2@MYBL1!0.59!4.68!MYBL1;;chr17:37934268..37934277,-!p10@IKZF3!0.59!2.90!IKZF3;;chr2:97202991..97203043,+!p3@ARID5A!0.59!2.90!ARID5A;;chr3:5021113..5021180,+!p1@BHLHE40!0.58!242.65!BHLHE40;;chr20:46130672..46130686,+!p2@NCOA3!0.58!15.15!NCOA3;;chr16:89787937..89787971,+!p1@ZNF276!0.58!8.47!ZNF276;;chr17:46621101..46621143,-!p7@HOXB2!0.58!4.01!HOXB2;;chr20:44600199..44600219,-!p3@ZNF335!0.58!4.01!ZNF335;;chr6:45390343..45390388,+!p10@RUNX2!0.58!4.01!RUNX2;;chr4:81104865..81104886,+!p6@PRDM8!0.58!3.12!PRDM8;;chr4:109087445..109087463,-!p1@LEF1!0.58!2.79!LEF1;;chr8:60031563..60031574,-!p7@TOX!0.58!2.79!TOX;;chr19:16435735..16435773,+!p4@KLF2!0.58!2.79!KLF2;;chr6:91006518..91006570,-!p1@BACH2!0.57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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000409,FF:0011127,FF:11794-124C3
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13204.11794-124C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13204.11794-124C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13204.11794-124C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13204.11794-124C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25%252bCD45RA-%2520memory%2520regulatory%2520T%2520cells%2520expanded%252c%2520donor1.CNhs13204.11794-124C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11794-124C3
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
 |is_obsolete=
+|library_id=CNhs13204
+|library_id_phase_based=2:CNhs13204
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11794
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11794
 |name=CD4+CD25+CD45RA- memory regulatory T cells expanded, donor1
 |namespace=
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13204,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 61: / Line 78: @@
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 |sample_cell_line=
@@ Line 82: / Line 100: @@
 |top_motifs=ELF1,2,4:2.70713384353;RORA:2.3790926365;TLX2:2.37136343263;RUNX1..3:2.2800733944;PAX3,7:2.11491607954;CDX1,2,4:1.95886148893;ETS1,2:1.7268872553;CRX:1.52258056396;SPI1:1.40076504014;FOX{F1,F2,J1}:1.39435095178;DMAP1_NCOR{1,2}_SMARC:1.2772753079;IRF1,2:1.22431560527;STAT5{A,B}:1.12567238121;GATA6:1.12552215;ELK1,4_GABP{A,B1}:1.09435488405;ZBTB16:1.08004808937;NANOG{mouse}:1.04612546842;SPIB:1.01051905103;BPTF:0.946937194648;PDX1:0.942583235023;YY1:0.94010229007;HMX1:0.896414344318;FOX{D1,D2}:0.883233264108;PBX1:0.876542556336;POU1F1:0.829770328509;STAT1,3:0.81413132858;ATF5_CREB3:0.800048849244;RFX2..5_RFXANK_RFXAP:0.789287566592;PAX4:0.785126889358;NFATC1..3:0.783080390988;STAT2,4,6:0.772816617673;FOXO1,3,4:0.770020640301;POU2F1..3:0.734607132369;T:0.729701892903;CREB1:0.635567720363;TGIF1:0.635327841773;NKX2-2,8:0.611663915648;MYOD1:0.576061068118;E2F1..5:0.543664876304;NFY{A,B,C}:0.524999363808;NFKB1_REL_RELA:0.508435734117;AIRE:0.493332746208;FOXN1:0.490725993686;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.480761431929;IKZF2:0.47712280311;IRF7:0.455719273869;NKX6-1,2:0.437973987629;LEF1_TCF7_TCF7L1,2:0.388716020334;NKX3-1:0.383186791724;MYB:0.38100446227;SNAI1..3:0.379617690464;ZEB1:0.371748937082;PAX2:0.322155963005;BREu{core}:0.309105834576;LMO2:0.268039619035;SPZ1:0.242455314743;HES1:0.23039306157;NFE2L1:0.216252116423;SREBF1,2:0.213792859368;JUN:0.187845835436;FOXM1:0.181061009442;TAL1_TCF{3,4,12}:0.177351849465;CUX2:0.154456010828;FOXA2:0.151226067035;EP300:0.133216019506;NRF1:0.129049656752;PITX1..3:0.0536442136333;SOX5:0.0524078154072;PAX8:0.046409354952;NFIL3:0.0379633869198;FOXP3:0.0207841078289;ZNF423:0.00961277814015;ATF4:0.00612130073545;DBP:-0.0153211481582;ATF6:-0.0337927661533;ZNF143:-0.0681035400153;OCT4_SOX2{dimer}:-0.0697146193049;FOX{I1,J2}:-0.102274248222;FOXP1:-0.104911695683;GFI1:-0.112128508695;EVI1:-0.119249062881;GLI1..3:-0.121687145126;NR5A1,2:-0.13952724023;NFIX:-0.14970323709;ZNF148:-0.155655772952;ZNF384:-0.174518456938;RXRA_VDR{dimer}:-0.185850573085;SMAD1..7,9:-0.187830049609;HOX{A6,A7,B6,B7}:-0.247293709504;HNF4A_NR2F1,2:-0.252656709102;RFX1:-0.258655259757;GCM1,2:-0.259309052902;ATF2:-0.266157369761;MYFfamily:-0.271680661269;AHR_ARNT_ARNT2:-0.278419944683;SRF:-0.285101098452;FOXQ1:-0.318913731509;ALX1:-0.334102065826;ARID5B:-0.342955148748;BACH2:-0.378243737261;NFE2L2:-0.396003890289;FOSL2:-0.397133318305;AR:-0.40495069907;NFE2:-0.407643967502;MAFB:-0.41455495091;FOS_FOS{B,L1}_JUN{B,D}:-0.416220872546;PRRX1,2:-0.421626704854;TP53:-0.428522178157;CEBPA,B_DDIT3:-0.440486337273;ESRRA:-0.444390438425;HAND1,2:-0.466940191094;HNF1A:-0.47036218338;SOX2:-0.477746705711;TFCP2:-0.477986711238;HMGA1,2:-0.487176897971;HIF1A:-0.496543468992;NHLH1,2:-0.503876711095;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.506617742994;NR3C1:-0.521898693279;RREB1:-0.525718758987;ESR1:-0.533726536869;TFDP1:-0.594219713783;VSX1,2:-0.595435341592;HSF1,2:-0.629060474131;HOXA9_MEIS1:-0.641817955165;POU5F1:-0.659915250356;POU3F1..4:-0.673710406125;HLF:-0.702289557076;FOXD3:-0.717831502643;PAX5:-0.723105610862;UFEwm:-0.745210722415;NR1H4:-0.746663230442;TFAP4:-0.747317699355;ZNF238:-0.77279581334;NANOG:-0.787450613697;REST:-0.799064160171;ONECUT1,2:-0.802182713502;NKX2-1,4:-0.819470737093;NKX2-3_NKX2-5:-0.821084364365;PPARG:-0.829862977082;PAX6:-0.852830133155;ZBTB6:-0.856945195312;ALX4:-0.863863716103;SOX{8,9,10}:-0.866023293187;MYBL2:-0.880405903724;MED-1{core}:-0.896563594838;ADNP_IRX_SIX_ZHX:-0.951141404187;SOX17:-1.01474199561;TOPORS:-1.01568081592;MZF1:-1.03979913333;PRDM1:-1.04394068884;EBF1:-1.0493697009;HBP1_HMGB_SSRP1_UBTF:-1.05473330708;NR6A1:-1.06405306395;MEF2{A,B,C,D}:-1.09521947647;MAZ:-1.09707171024;bHLH_family:-1.1432213549;HOX{A5,B5}:-1.17960672024;LHX3,4:-1.20488907723;ZFP161:-1.21088917074;GFI1B:-1.21952407596;MTE{core}:-1.24570627687;EN1,2:-1.25490292658;TBX4,5:-1.26187467348;XCPE1{core}:-1.27072391187;RBPJ:-1.28920701282;GATA4:-1.29444561378;CDC5L:-1.30755232345;TBP:-1.32054133862;KLF4:-1.32717974825;GTF2I:-1.33085310485;EGR1..3:-1.37043959213;MTF1:-1.38975388752;PATZ1:-1.39455754166;ZIC1..3:-1.39473244735;GZF1:-1.41840587863;TFAP2{A,C}:-1.51875361164;HIC1:-1.53840531412;TEF:-1.54709985557;TFAP2B:-1.58211329162;GTF2A1,2:-1.62624911048;PAX1,9:-1.63404276433;TEAD1:-1.67699438858;RXR{A,B,G}:-1.69331628058;HOX{A4,D4}:-1.73793308346;NKX3-2:-1.77860980845;TLX1..3_NFIC{dimer}:-1.78027292441;SP1:-1.839077032;IKZF1:-1.95689604558;POU6F1:-2.02298144661;XBP1:-2.02630679428;FOXL1:-2.20002231064
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11794-124C3;search_select_hide=table117:FF:11794-124C3
 }}

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FF:11794-124C3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:20, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0