FF:11842-124H6: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (24 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005622 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008566;DRR009438;DRZ000863;DRZ002248;DRZ012213;DRZ013598 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000275 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor3%2520%2528SOC-57-02-G%2529.CNhs13507.11842-124H6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor3%2520%2528SOC-57-02-G%2529.CNhs13507.11842-124H6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor3%2520%2528SOC-57-02-G%2529.CNhs13507.11842-124H6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor3%2520%2528SOC-57-02-G%2529.CNhs13507.11842-124H6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor3%2520%2528SOC-57-02-G%2529.CNhs13507.11842-124H6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11842-124H6 | |id=FF:11842-124H6 | ||
|is_a=EFO:0002090;;EFO:0002091;;FF: | |is_a=EFO:0002090;;EFO:0002091;;FF:0000275 | ||
|is_obsolete= | |||
|library_id=CNhs13507 | |||
|library_id_phase_based=2:CNhs13507 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11842 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11842 | |||
|name=mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G) | |name=mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G) | ||
|namespace= | |namespace= | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13507,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13507,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.00523306136268939,0,0.178416605059539,0.366003413331898,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0.067593195181018,0,0,0.245822973604257,0,0,0,0,0,0,0,0,0,0.165551091449075,0,0,0.170440971933472,0.117329016210021,0.285122238562885,0,0,0,0,0,0,0.118346098168608,0,0,0,0,0,0,0,0.0685587302064704,0,0,0.187778611349788,0,0,0,0,0,0,0,0,0,0,0.165551091449075,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0173959452266738,0.0827755457245375,0,0,-0.158136404843001,0.0609679247202284,0,0,0.142561119281442,0,0.067515740211369,0.19813788602137,0,0,0,0,0,0,0.165551091449075,0,0,0,0,0,0,0,0,0,0,-0.0135980481979233,0,0,0,0.0623629581811544,0.0449065695746275,0,0,0.04526491157491,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.067515740211369,0.285122238562885,0,0,0,0,0.165551091449075,0,0,0,0,0,-0.081627783836489,0,-0.474086218752008,0.0220359489256036,0,0,0.254528573636811,0,0,0,0,0.165551091449075,0,0.285122238562885,0.285122238562885,0,0.585899893692548,0,-0.0504125515893149,0.141412586523797,0,0,0,0,0.511987699954972,0,-0.0316969418680675,0.0972068303717073,0,0,0,0,0.208136299903293,0,0.0446716076553348,0.438439995736384,0.0635106504600778,0.189252386707112,0.109838594667894,0,0,0,0.155586852022038,0.127530222310408,0,0,0.0207812675295684,0.281423483850843,0,0,1.16286915991867,0,0.298631982606326,-0.0744814880186165,0,-0.07968314853172,0,0,0,0,0,0,0,0,0,0,0,0.540626280296813,-0.161437505229893,-0.0304099808375785,0,0,0,-0.130465977538458,0,0.0434574460693005,0.147874008103234,0.109147586898258,0,-0.0770892144103565,0,-0.136838635560838,0.0577818712843354,-0.52410311493263,-0.0032163485551826,0.430572525720977,0.331178444509954,0,0.0471729670016818,0.16255945927436,-0.0338092543831668,-0.23057478284034,0,0.160685319765989,-0.157640190881811,0,0,0,0.081962178999014,0,-0.0442620707262937,-0.0343359772237201,-0.0206198387486903,0.0715757159177565,-0.214161414286836,-0.100757869434702,0.0508925757377496,0.103028590824772,0.215793720747935,0.00428400759346483,0.190786740815012,0,0.378779563383119,0,0.0179463360973449,0.226109531379686,-0.330703934615795,0,-0.0281987245579272,0.0972068303717073,0,0.0291448617579803,-0.0317018221277481,0,0,-0.122998493618358,0,0,0,0,0,-0.239745291995132,0.133738030614364,-0.0673044701064693,0,-0.063135958117752,0,-0.214510534628049,0,-0.170714499753596,0,0,-0.12708271314716,0,-0.0772175096887673,-0.0684532014472201,0.0482425988729938,-0.0436152420086183,-0.0584468268118252,0.0869879970776485,-0.0801719842494325,-0.158136404843001,-0.0376347656115886,-0.0349886215887898,0.367651904777766,0,0.0173959452266738,-0.223719394368471,-0.0330103370746836,0.128737732182013,0.165551091449075,0.142306638988463,0,-0.158522798255729,0,-0.251757463165977,0.087774916027653,-0.439289374580686,0.00104001731728331,0,0.0563510176529978,0.603962890279119,0,0,0,0,-0.150367083334639,-0.0244657928680527,-0.128874882140051,0.192961444293807,0,0.383718144434654,0,0.165551091449075,0.230112384636797,-0.0699249463153132,0,0.257721804721305,0.019005753287497,-0.0262416661031788,0.339807663818119,0,0,-0.266920774609606,0,0,0.0222806036828629,0.165551091449075,-0.16400458670558,-0.0877752500376802,0,-0.0258472637297179,0,0,0.107594472597709,0,0.211776740380118,0,0,0.299685972977135,0.339150624262921,0,0,0.285122238562885,0,0,0,0,0,0,0,0,0.186725538815685,0.0239462331666712,0,-0.0483619629429117,0,0,0,0,0,0.121221631125715,0,0.285122238562885,0.46010197143531,0.0325591549729111,-0.12301741567642,0,0,0,0,0.457506771091055,0.0818856764681608,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0.165551091449075,0,0,0.107820634395411,0.329128622478858,0,0,0,0.396275772042739,0,0,0.285122238562885,0,0.0572572416971673,0,0,0.399264482840707,0,0.0320503759018995,-0.0815818795468414,0.0114718685787692,0.0257384210010815,-0.157570478746795,0.0985142492155873,0,0,-0.261347131789888,0,0.108177403977487,-0.0439813933743224,0.0705930665787785,0,0,0,0,0,0,0,0.285122238562885,0.070807726163129,0.0827755457245375,0,0,0,0,0,0,0,0,0,0.165551091449075,0.065943698966578,-0.0922240566585104,0.285122238562885,0,0,0,0,0,0,0.432559429952986,-0.0907611182268342,0,0,0,0,0,0,0,0,-0.305874848214167,0,0,0,0,0,0.0685587302064704,0,0,0,0,0.56645573521472,0,0,0.178416605059539,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.131801491477728,0,0,0,0,0,0,0,0.398396875438439,0,0.165551091449075,0,0,1.94563463245296,0,0,0,0.273983178593963,0,0.00523306136268939,0,0,0.521160164059801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0827755457245375,0,0,0,0.402449604624745,0,0,-0.0568589461625992,0,0,-0.00473898400651496,0,0,0,0,0,0,-0.031340424028527,0.125206252599949,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227889368626527,0.0479175019194494,0,0,0,0,0.165551091449075,0,0,0.067593195181018,0.165551091449075,0,-0.0920328098005262,0,0,0,0,0,0,-0.027396758626809,0.368221951921601,-0.0447281798179406,0,0,0,0.0881755467989875,0,0,0,0,0.0987737040301741,0,0,0,0,0,0,0,0,0,0,0,0.0827755457245375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0.142561119281442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298761095114481,0,0,0,-0.0475351382079682,0.165551091449075,0,0,0,0,0,0.165551091449075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345876232228243,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117329016210021,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296601923720731,0,0,0,0,0.580571556839974,0,0.0827755457245375,0,0,0,0,1.11610535055184,-0.087428497801853,0,0,0.378779563383119,0,0,0,0,0,0,0,0,0,0,0.497694490890133,0,0,0.170440971933472,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.236692196337216,0,0,0,0.165551091449075,0,0,0,0,1.47378019299967,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165551091449075,0,0,0,0,0,0,0,0.0660526944600003,0.0449065695746275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142561119281442,0,0,0,0,0,0,0,0,0,0,0.142561119281442,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0406197423569518,0.0827755457245375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112864196908767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0827755457245375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847105966236443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.525512716953692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0827755457245375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0271960963958465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0827755457245375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0321533674050525,0,0,0,0,0,0,0,0.162426241565884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0510589596761545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187778611349788,0,0.0827755457245375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245822973604257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239049205024471,0.0827755457245375,0,0,0,0,0,0,0,0,0,0.101311027753635,0.0827755457245375,0,0,0,0,0,0,0.0827755457245375,0,0,0,0,0,0.165551091449075,0,0,0,0,-0.090664285715326,0,0,0.906544619911256,0,0.082119709605336,-0.150306889650249,0,0,0,0,0,0.165551091449075,0,0,0,0,0,0,0,0,0,0.165551091449075,-0.0400762477245316,0,0,0.151648685122164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0987074680601533,0,0.165551091449075,-0.11195244995913,0,0,0.235275658090845,0,0,0.165551091449075,0,0,-0.00944180364122357,0.149851367453959,0,0,0,0,0,0,0,0,0,0,0,0.285122238562885,0,0,0.0494953782722574,0,0,0,-0.0568589461625992,-0.269475635594569,0,-0.0937140157875394,0,0,-0.368759937015424,0,0,0,-0.0959594073735869 | |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=5.11455 | |rna_weight_ug=5.11455 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.42000041704984e-212!GO:0005737;cytoplasm;2.36610303127134e-187!GO:0043226;organelle;9.10630088582958e-150!GO:0043229;intracellular organelle;2.3541937540576e-149!GO:0043231;intracellular membrane-bound organelle;1.22599000096794e-147!GO:0043227;membrane-bound organelle;2.42587180129694e-147!GO:0044444;cytoplasmic part;3.15566646748212e-138!GO:0044422;organelle part;1.20760119468933e-110!GO:0044446;intracellular organelle part;2.39518873469257e-109!GO:0032991;macromolecular complex;3.86288215108316e-73!GO:0005515;protein binding;3.86288215108316e-73!GO:0044238;primary metabolic process;7.27450398835019e-69!GO:0044237;cellular metabolic process;8.1167858327448e-69!GO:0030529;ribonucleoprotein complex;1.61183248275387e-65!GO:0043170;macromolecule metabolic process;3.26756942330417e-62!GO:0005739;mitochondrion;5.56099969173164e-53!GO:0043233;organelle lumen;1.90000139396417e-52!GO:0031974;membrane-enclosed lumen;1.90000139396417e-52!GO:0031090;organelle membrane;5.36986805815079e-52!GO:0003723;RNA binding;4.80027218554321e-51!GO:0019538;protein metabolic process;4.38261766319499e-49!GO:0044428;nuclear part;1.59437027206344e-48!GO:0044260;cellular macromolecule metabolic process;1.64216119845996e-44!GO:0044267;cellular protein metabolic process;1.23880807706056e-43!GO:0015031;protein transport;4.12284725946339e-43!GO:0033036;macromolecule localization;8.32352187452163e-43!GO:0006412;translation;1.33279068849066e-42!GO:0005634;nucleus;1.53804004040592e-42!GO:0005840;ribosome;1.15174162123748e-41!GO:0045184;establishment of protein localization;1.45061934533439e-40!GO:0008104;protein localization;4.63000509996968e-40!GO:0009058;biosynthetic process;7.4633457890332e-40!GO:0016043;cellular component organization and biogenesis;4.44541347022505e-39!GO:0005829;cytosol;8.02584577783038e-39!GO:0003735;structural constituent of ribosome;1.16176714678166e-37!GO:0043234;protein complex;1.72338431555853e-36!GO:0009059;macromolecule biosynthetic process;1.05872300583715e-35!GO:0044429;mitochondrial part;1.05089630957614e-34!GO:0044249;cellular biosynthetic process;2.71089657516177e-34!GO:0046907;intracellular transport;3.42227957204342e-34!GO:0031967;organelle envelope;9.64936616645432e-34!GO:0006396;RNA processing;1.15012617371378e-33!GO:0031975;envelope;2.09141101523558e-33!GO:0033279;ribosomal subunit;2.98969631889612e-33!GO:0016071;mRNA metabolic process;2.24498029997348e-29!GO:0043283;biopolymer metabolic process;2.67520739242041e-29!GO:0006886;intracellular protein transport;3.66850194841506e-29!GO:0031981;nuclear lumen;3.89332913183882e-29!GO:0008380;RNA splicing;2.16259751420228e-27!GO:0005783;endoplasmic reticulum;7.43725569621892e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.6447102674948e-26!GO:0010467;gene expression;2.52395716873831e-25!GO:0006397;mRNA processing;2.76306595917494e-25!GO:0012505;endomembrane system;1.12909808272704e-24!GO:0005740;mitochondrial envelope;1.62395003528394e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.72533875442926e-22!GO:0031966;mitochondrial membrane;3.16015803029049e-22!GO:0065003;macromolecular complex assembly;5.66913966363507e-22!GO:0051641;cellular localization;1.0926496393988e-21!GO:0051649;establishment of cellular localization;1.26494196920656e-21!GO:0006457;protein folding;2.04450982456157e-21!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.58209475014733e-21!GO:0044445;cytosolic part;7.29958906327998e-21!GO:0019866;organelle inner membrane;7.7310829659552e-21!GO:0006996;organelle organization and biogenesis;1.42014709500404e-20!GO:0006119;oxidative phosphorylation;2.12420093803014e-20!GO:0005794;Golgi apparatus;2.97194946606539e-20!GO:0044432;endoplasmic reticulum part;5.44750624184482e-20!GO:0005743;mitochondrial inner membrane;1.98600594413691e-19!GO:0048770;pigment granule;2.18040711413286e-19!GO:0042470;melanosome;2.18040711413286e-19!GO:0022607;cellular component assembly;2.33698268555845e-19!GO:0016462;pyrophosphatase activity;4.77333557718199e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.53090742884534e-19!GO:0000166;nucleotide binding;6.53162169240906e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;7.26876799942791e-19!GO:0005681;spliceosome;7.26876799942791e-19!GO:0043228;non-membrane-bound organelle;7.26876799942791e-19!GO:0043232;intracellular non-membrane-bound organelle;7.26876799942791e-19!GO:0017111;nucleoside-triphosphatase activity;1.34504590956513e-18!GO:0005654;nucleoplasm;6.54632728080125e-18!GO:0015934;large ribosomal subunit;7.4966173514506e-18!GO:0044455;mitochondrial membrane part;2.95064057274911e-17!GO:0048193;Golgi vesicle transport;2.38828904865963e-16!GO:0015935;small ribosomal subunit;2.52732965774849e-16!GO:0022618;protein-RNA complex assembly;3.96201560734293e-16!GO:0051082;unfolded protein binding;1.15253366793549e-15!GO:0008134;transcription factor binding;3.4568478998062e-15!GO:0044265;cellular macromolecule catabolic process;3.91843766317769e-15!GO:0043285;biopolymer catabolic process;7.86774191738143e-15!GO:0005746;mitochondrial respiratory chain;1.16133149824499e-14!GO:0051186;cofactor metabolic process;1.39600425391566e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.67794380193166e-14!GO:0044451;nucleoplasm part;1.70809412187555e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.05041703817395e-14!GO:0044257;cellular protein catabolic process;2.76850718789677e-14!GO:0016874;ligase activity;2.91628220362825e-14!GO:0019941;modification-dependent protein catabolic process;3.32393410668681e-14!GO:0043632;modification-dependent macromolecule catabolic process;3.32393410668681e-14!GO:0009057;macromolecule catabolic process;4.09061995574818e-14!GO:0006511;ubiquitin-dependent protein catabolic process;5.14425150066133e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.08632363047383e-14!GO:0032553;ribonucleotide binding;6.08632363047383e-14!GO:0032555;purine ribonucleotide binding;6.08632363047383e-14!GO:0006605;protein targeting;6.14058197629062e-14!GO:0017076;purine nucleotide binding;6.69794750311525e-14!GO:0016192;vesicle-mediated transport;6.87823836555572e-14!GO:0006259;DNA metabolic process;7.94238563535064e-14!GO:0005789;endoplasmic reticulum membrane;8.65472232816367e-14!GO:0000502;proteasome complex (sensu Eukaryota);8.67422388064114e-14!GO:0006512;ubiquitin cycle;1.07071594658177e-13!GO:0008135;translation factor activity, nucleic acid binding;1.29575959762715e-13!GO:0031980;mitochondrial lumen;1.44682304078505e-13!GO:0005759;mitochondrial matrix;1.44682304078505e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.48606121976078e-13!GO:0030163;protein catabolic process;1.83205461831989e-13!GO:0044248;cellular catabolic process;3.34076257447306e-13!GO:0043412;biopolymer modification;3.93877129195415e-13!GO:0050136;NADH dehydrogenase (quinone) activity;4.14538241012228e-13!GO:0003954;NADH dehydrogenase activity;4.14538241012228e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.14538241012228e-13!GO:0005793;ER-Golgi intermediate compartment;5.70344172140316e-13!GO:0012501;programmed cell death;6.44858521412932e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.15010991952301e-12!GO:0006915;apoptosis;1.73219529834792e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.69727409115519e-12!GO:0048523;negative regulation of cellular process;5.80328441079262e-12!GO:0006464;protein modification process;6.25177943955292e-12!GO:0005730;nucleolus;7.59241531021532e-12!GO:0008219;cell death;1.35396086525842e-11!GO:0016265;death;1.35396086525842e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.29307477128614e-11!GO:0045271;respiratory chain complex I;2.29307477128614e-11!GO:0005747;mitochondrial respiratory chain complex I;2.29307477128614e-11!GO:0006732;coenzyme metabolic process;3.99181490317397e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.37685782573383e-11!GO:0042773;ATP synthesis coupled electron transport;4.37685782573383e-11!GO:0005524;ATP binding;5.43061716344643e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.75818476539503e-11!GO:0006413;translational initiation;6.92292156682445e-11!GO:0005635;nuclear envelope;7.10651714789723e-11!GO:0003743;translation initiation factor activity;8.72944214624754e-11!GO:0032559;adenyl ribonucleotide binding;1.12291035114726e-10!GO:0005761;mitochondrial ribosome;1.18010743254504e-10!GO:0000313;organellar ribosome;1.18010743254504e-10!GO:0005768;endosome;1.54200336656533e-10!GO:0030554;adenyl nucleotide binding;1.58609312010961e-10!GO:0006446;regulation of translational initiation;2.10552504664578e-10!GO:0009259;ribonucleotide metabolic process;2.38082782775961e-10!GO:0003676;nucleic acid binding;2.97461674173918e-10!GO:0048519;negative regulation of biological process;3.55451235259309e-10!GO:0006163;purine nucleotide metabolic process;4.10195935002525e-10!GO:0003712;transcription cofactor activity;4.76341107992015e-10!GO:0009150;purine ribonucleotide metabolic process;5.16910911453836e-10!GO:0031965;nuclear membrane;5.86946331299021e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.38831597198878e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.41663059126e-10!GO:0000375;RNA splicing, via transesterification reactions;6.41663059126e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.41663059126e-10!GO:0044431;Golgi apparatus part;1.19911718612018e-09!GO:0006164;purine nucleotide biosynthetic process;2.00973410815107e-09!GO:0043687;post-translational protein modification;2.13839960440637e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.4358608655496e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.75236259644289e-09!GO:0009260;ribonucleotide biosynthetic process;3.61713461580352e-09!GO:0006913;nucleocytoplasmic transport;3.67418682777967e-09!GO:0009055;electron carrier activity;3.7877919362541e-09!GO:0008565;protein transporter activity;3.83774305115665e-09!GO:0043069;negative regulation of programmed cell death;4.10680020745872e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.16449922207483e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.16449922207483e-09!GO:0009141;nucleoside triphosphate metabolic process;5.29056634690215e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.41958631484885e-09!GO:0016887;ATPase activity;6.277798034497e-09!GO:0051169;nuclear transport;6.28928807081372e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.72607426886738e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.46689649755232e-09!GO:0043066;negative regulation of apoptosis;1.17141985239896e-08!GO:0042623;ATPase activity, coupled;1.25382426634218e-08!GO:0015986;ATP synthesis coupled proton transport;1.25382426634218e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.25382426634218e-08!GO:0019829;cation-transporting ATPase activity;1.28116555997777e-08!GO:0003924;GTPase activity;1.37820099086391e-08!GO:0008639;small protein conjugating enzyme activity;1.46633421218296e-08!GO:0016604;nuclear body;1.8447302808773e-08!GO:0005788;endoplasmic reticulum lumen;1.86126029205079e-08!GO:0043067;regulation of programmed cell death;1.95056557749377e-08!GO:0016070;RNA metabolic process;2.13378409633146e-08!GO:0046034;ATP metabolic process;2.21342910354287e-08!GO:0044453;nuclear membrane part;2.26462607710716e-08!GO:0030120;vesicle coat;2.45813269766066e-08!GO:0030662;coated vesicle membrane;2.45813269766066e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.81974099496378e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.81974099496378e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.81974099496378e-08!GO:0042981;regulation of apoptosis;3.0240645555459e-08!GO:0004842;ubiquitin-protein ligase activity;3.04582043601663e-08!GO:0007049;cell cycle;3.43447840498092e-08!GO:0006916;anti-apoptosis;3.84990278405478e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.16133040670706e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.35394555515419e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.35394555515419e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.35394555515419e-08!GO:0009056;catabolic process;4.47002689244822e-08!GO:0006974;response to DNA damage stimulus;6.40688155037901e-08!GO:0019787;small conjugating protein ligase activity;6.50549376800378e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.13717162367079e-08!GO:0031988;membrane-bound vesicle;1.12842625759387e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.15910607508562e-07!GO:0005773;vacuole;1.24315268928888e-07!GO:0016491;oxidoreductase activity;1.31448879219504e-07!GO:0051246;regulation of protein metabolic process;1.39646248404854e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.57508784545807e-07!GO:0048475;coated membrane;1.59043063039494e-07!GO:0030117;membrane coat;1.59043063039494e-07!GO:0042254;ribosome biogenesis and assembly;1.95543476823788e-07!GO:0006754;ATP biosynthetic process;2.09003714831604e-07!GO:0006753;nucleoside phosphate metabolic process;2.09003714831604e-07!GO:0017038;protein import;2.35830125734617e-07!GO:0016607;nuclear speck;2.67514071566295e-07!GO:0016881;acid-amino acid ligase activity;2.75920678540138e-07!GO:0000139;Golgi membrane;2.77427070012939e-07!GO:0051188;cofactor biosynthetic process;2.89264213133614e-07!GO:0003714;transcription corepressor activity;2.90170677297513e-07!GO:0016787;hydrolase activity;3.99600514771237e-07!GO:0031252;leading edge;4.00152113610602e-07!GO:0031982;vesicle;4.54246094831401e-07!GO:0006366;transcription from RNA polymerase II promoter;5.16952423243028e-07!GO:0009117;nucleotide metabolic process;5.37808811803358e-07!GO:0009060;aerobic respiration;5.59093521121118e-07!GO:0031410;cytoplasmic vesicle;6.42300246186737e-07!GO:0044440;endosomal part;7.48286541172837e-07!GO:0010008;endosome membrane;7.48286541172837e-07!GO:0005770;late endosome;7.77316417462441e-07!GO:0050794;regulation of cellular process;7.87013618796762e-07!GO:0004386;helicase activity;8.37505632234284e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.52880888814145e-07!GO:0005798;Golgi-associated vesicle;8.93315677884654e-07!GO:0051789;response to protein stimulus;1.48727297912709e-06!GO:0006986;response to unfolded protein;1.48727297912709e-06!GO:0000323;lytic vacuole;2.11552332703926e-06!GO:0005764;lysosome;2.11552332703926e-06!GO:0045333;cellular respiration;2.64740171478629e-06!GO:0006399;tRNA metabolic process;3.03240939425466e-06!GO:0006461;protein complex assembly;3.23849623261739e-06!GO:0006281;DNA repair;3.72129703322805e-06!GO:0065002;intracellular protein transport across a membrane;3.7948362956305e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.82460762138208e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.82460762138208e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.82460762138208e-06!GO:0043038;amino acid activation;4.32082710855865e-06!GO:0006418;tRNA aminoacylation for protein translation;4.32082710855865e-06!GO:0043039;tRNA aminoacylation;4.32082710855865e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.75710339680985e-06!GO:0005643;nuclear pore;4.75710339680985e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;4.89996760494003e-06!GO:0016564;transcription repressor activity;4.89996760494003e-06!GO:0008026;ATP-dependent helicase activity;5.2495077921297e-06!GO:0006752;group transfer coenzyme metabolic process;5.27905620516401e-06!GO:0000074;regulation of progression through cell cycle;5.33493011103845e-06!GO:0009719;response to endogenous stimulus;5.38791915656316e-06!GO:0051726;regulation of cell cycle;5.40982947403522e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.48996947146778e-06!GO:0006793;phosphorus metabolic process;6.01484641504015e-06!GO:0006796;phosphate metabolic process;6.01484641504015e-06!GO:0051187;cofactor catabolic process;7.84561610404608e-06!GO:0009108;coenzyme biosynthetic process;7.94345483985313e-06!GO:0031324;negative regulation of cellular metabolic process;8.47668920550333e-06!GO:0007005;mitochondrion organization and biogenesis;8.96252992959512e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.02390911651708e-05!GO:0008361;regulation of cell size;1.03808574124244e-05!GO:0006323;DNA packaging;1.13152381087474e-05!GO:0006099;tricarboxylic acid cycle;1.16617046381114e-05!GO:0046356;acetyl-CoA catabolic process;1.16617046381114e-05!GO:0045786;negative regulation of progression through cell cycle;1.21560843249997e-05!GO:0051170;nuclear import;1.21623851111483e-05!GO:0005525;GTP binding;1.48907567515262e-05!GO:0008654;phospholipid biosynthetic process;1.58095520874059e-05!GO:0005769;early endosome;1.65172385599287e-05!GO:0016049;cell growth;1.67191752479259e-05!GO:0032446;protein modification by small protein conjugation;1.98200850482249e-05!GO:0016853;isomerase activity;2.00019025581099e-05!GO:0016310;phosphorylation;2.14232877672354e-05!GO:0045259;proton-transporting ATP synthase complex;2.1457086704511e-05!GO:0006613;cotranslational protein targeting to membrane;2.14970362031724e-05!GO:0006606;protein import into nucleus;2.33249786232204e-05!GO:0030133;transport vesicle;2.33263025877214e-05!GO:0046930;pore complex;2.34655927450815e-05!GO:0006403;RNA localization;2.38708624685478e-05!GO:0016740;transferase activity;2.47778634816101e-05!GO:0009109;coenzyme catabolic process;2.55469404096274e-05!GO:0022402;cell cycle process;2.58801393361222e-05!GO:0016567;protein ubiquitination;2.74165297384966e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.98857796845771e-05!GO:0050657;nucleic acid transport;3.14077246492413e-05!GO:0051236;establishment of RNA localization;3.14077246492413e-05!GO:0050658;RNA transport;3.14077246492413e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.25668435186909e-05!GO:0001558;regulation of cell growth;3.65839580834002e-05!GO:0009892;negative regulation of metabolic process;3.76413797098986e-05!GO:0006084;acetyl-CoA metabolic process;3.78330870678596e-05!GO:0045454;cell redox homeostasis;4.36316662128774e-05!GO:0048522;positive regulation of cellular process;4.44884381766035e-05!GO:0004298;threonine endopeptidase activity;4.68848155883926e-05!GO:0031968;organelle outer membrane;4.87396048572281e-05!GO:0000245;spliceosome assembly;5.21561651769233e-05!GO:0030867;rough endoplasmic reticulum membrane;5.99514701226339e-05!GO:0043566;structure-specific DNA binding;6.04191632634553e-05!GO:0006091;generation of precursor metabolites and energy;6.24718090226891e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.18811899643548e-05!GO:0019867;outer membrane;7.41108218955301e-05!GO:0016563;transcription activator activity;7.78629814151021e-05!GO:0050789;regulation of biological process;9.48555220437416e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.57679695283341e-05!GO:0051276;chromosome organization and biogenesis;9.80031481123992e-05!GO:0003724;RNA helicase activity;9.82768078961477e-05!GO:0000151;ubiquitin ligase complex;0.000103813391511536!GO:0016859;cis-trans isomerase activity;0.000106136494151232!GO:0032561;guanyl ribonucleotide binding;0.000106276640701005!GO:0019001;guanyl nucleotide binding;0.000106276640701005!GO:0005905;coated pit;0.000108506231199163!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000113139052063083!GO:0015399;primary active transmembrane transporter activity;0.000113139052063083!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00011502082851934!GO:0005762;mitochondrial large ribosomal subunit;0.000130555577382174!GO:0000315;organellar large ribosomal subunit;0.000130555577382174!GO:0003697;single-stranded DNA binding;0.000136511343347101!GO:0007243;protein kinase cascade;0.000142446007190164!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000157433696385619!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000161785632325127!GO:0030029;actin filament-based process;0.000190507013571362!GO:0004576;oligosaccharyl transferase activity;0.000204100190190594!GO:0044262;cellular carbohydrate metabolic process;0.000221246850858802!GO:0008250;oligosaccharyl transferase complex;0.000230243246074635!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000243740947503662!GO:0006333;chromatin assembly or disassembly;0.000248643992499452!GO:0005667;transcription factor complex;0.000251649906252954!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000256698726184136!GO:0006364;rRNA processing;0.00026607968986525!GO:0016568;chromatin modification;0.000277048098772915!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000301033445426981!GO:0015630;microtubule cytoskeleton;0.000311042755493129!GO:0006612;protein targeting to membrane;0.000311390743799593!GO:0065004;protein-DNA complex assembly;0.000320249168481612!GO:0003713;transcription coactivator activity;0.000337895198479023!GO:0008610;lipid biosynthetic process;0.00034159395843278!GO:0006260;DNA replication;0.000356911457861396!GO:0016072;rRNA metabolic process;0.000358026791899962!GO:0005741;mitochondrial outer membrane;0.000395206182884234!GO:0005048;signal sequence binding;0.000401419387572457!GO:0007264;small GTPase mediated signal transduction;0.000410663019120767!GO:0043021;ribonucleoprotein binding;0.000434613841641382!GO:0005791;rough endoplasmic reticulum;0.000436970581869264!GO:0019899;enzyme binding;0.000454515176248887!GO:0005885;Arp2/3 protein complex;0.00046662657095924!GO:0009165;nucleotide biosynthetic process;0.000490672285868889!GO:0016126;sterol biosynthetic process;0.000496783518850799!GO:0001726;ruffle;0.000505627947670582!GO:0051427;hormone receptor binding;0.000559003511983887!GO:0006891;intra-Golgi vesicle-mediated transport;0.000559648247465838!GO:0016779;nucleotidyltransferase activity;0.000559648247465838!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000564657768244405!GO:0018196;peptidyl-asparagine modification;0.000574781238559198!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000574781238559198!GO:0005813;centrosome;0.000607205884940088!GO:0051028;mRNA transport;0.000612655864004414!GO:0022890;inorganic cation transmembrane transporter activity;0.000677526931749346!GO:0030663;COPI coated vesicle membrane;0.000677791501864127!GO:0030126;COPI vesicle coat;0.000677791501864127!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000822180301300669!GO:0015980;energy derivation by oxidation of organic compounds;0.000868144195328553!GO:0035257;nuclear hormone receptor binding;0.00100578416844419!GO:0051920;peroxiredoxin activity;0.00105494589123198!GO:0019843;rRNA binding;0.00115534578562051!GO:0008092;cytoskeletal protein binding;0.00115816008407566!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0012139539063893!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00122604844028555!GO:0030137;COPI-coated vesicle;0.00125124244029935!GO:0006818;hydrogen transport;0.00125371007208556!GO:0000785;chromatin;0.00129416057457964!GO:0016481;negative regulation of transcription;0.00132660080368876!GO:0008186;RNA-dependent ATPase activity;0.00136889735321664!GO:0008047;enzyme activator activity;0.00141363403221951!GO:0043492;ATPase activity, coupled to movement of substances;0.00143788384061377!GO:0046474;glycerophospholipid biosynthetic process;0.00143788384061377!GO:0031072;heat shock protein binding;0.00143950283703617!GO:0005815;microtubule organizing center;0.00156426450866507!GO:0006892;post-Golgi vesicle-mediated transport;0.00167116008599336!GO:0015992;proton transport;0.00167116008599336!GO:0016044;membrane organization and biogenesis;0.00168179299933662!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00169012103924289!GO:0030658;transport vesicle membrane;0.00172382045779564!GO:0040008;regulation of growth;0.00177520639039348!GO:0043623;cellular protein complex assembly;0.00178099913468358!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00188558892980021!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00188558892980021!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00188558892980021!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00196191795143591!GO:0048518;positive regulation of biological process;0.00196743738153029!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00198850922832823!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00198850922832823!GO:0007033;vacuole organization and biogenesis;0.00201350426956944!GO:0007010;cytoskeleton organization and biogenesis;0.00205152833947333!GO:0030132;clathrin coat of coated pit;0.00211815488795856!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00212901357631019!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00216631099262269!GO:0030027;lamellipodium;0.00218159208044137!GO:0005694;chromosome;0.00226530328299871!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00228432577999448!GO:0048468;cell development;0.00238550029002913!GO:0006950;response to stress;0.00244429739951757!GO:0065007;biological regulation;0.00254199694154712!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00256610180339943!GO:0016197;endosome transport;0.00256610180339943!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00271029002596667!GO:0007040;lysosome organization and biogenesis;0.00272390669024864!GO:0045045;secretory pathway;0.00275039406049947!GO:0006695;cholesterol biosynthetic process;0.00293789476485567!GO:0000314;organellar small ribosomal subunit;0.00319410358662873!GO:0005763;mitochondrial small ribosomal subunit;0.00319410358662873!GO:0048471;perinuclear region of cytoplasm;0.00340904134099705!GO:0007050;cell cycle arrest;0.00350333411397126!GO:0004004;ATP-dependent RNA helicase activity;0.00354258512744115!GO:0004177;aminopeptidase activity;0.0035908738109612!GO:0048500;signal recognition particle;0.0037219611474482!GO:0031418;L-ascorbic acid binding;0.00377777738444902!GO:0006334;nucleosome assembly;0.00380911384315768!GO:0065009;regulation of a molecular function;0.00387783935003874!GO:0009967;positive regulation of signal transduction;0.00412808088040564!GO:0031543;peptidyl-proline dioxygenase activity;0.00414931726931191!GO:0030127;COPII vesicle coat;0.00417931800265675!GO:0012507;ER to Golgi transport vesicle membrane;0.00417931800265675!GO:0030134;ER to Golgi transport vesicle;0.0041876848915528!GO:0000278;mitotic cell cycle;0.00440412634947826!GO:0030176;integral to endoplasmic reticulum membrane;0.00443421082264437!GO:0051168;nuclear export;0.00448915587145728!GO:0030118;clathrin coat;0.00450095985109!GO:0030659;cytoplasmic vesicle membrane;0.00455713208125967!GO:0043681;protein import into mitochondrion;0.0045726180263749!GO:0051252;regulation of RNA metabolic process;0.00474434865922206!GO:0030660;Golgi-associated vesicle membrane;0.00484759183598381!GO:0043284;biopolymer biosynthetic process;0.0048723196820816!GO:0044427;chromosomal part;0.00490488187839401!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00525712771054191!GO:0046467;membrane lipid biosynthetic process;0.00525832918989717!GO:0008632;apoptotic program;0.00570058556349621!GO:0006509;membrane protein ectodomain proteolysis;0.00585857570994944!GO:0033619;membrane protein proteolysis;0.00585857570994944!GO:0005774;vacuolar membrane;0.00585857570994944!GO:0006650;glycerophospholipid metabolic process;0.00597968164283921!GO:0017166;vinculin binding;0.00629640719732657!GO:0031497;chromatin assembly;0.00654110465423171!GO:0003690;double-stranded DNA binding;0.00693022365621053!GO:0048487;beta-tubulin binding;0.00697144997360447!GO:0051087;chaperone binding;0.00700998968421609!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00707453138973648!GO:0006740;NADPH regeneration;0.00709128596279573!GO:0006098;pentose-phosphate shunt;0.00709128596279573!GO:0006414;translational elongation;0.00711271802374317!GO:0003899;DNA-directed RNA polymerase activity;0.00721919901230915!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00725226480840263!GO:0045047;protein targeting to ER;0.00725226480840263!GO:0006626;protein targeting to mitochondrion;0.00733731504040441!GO:0046483;heterocycle metabolic process;0.0073738380384108!GO:0042802;identical protein binding;0.00740501905509811!GO:0006979;response to oxidative stress;0.00752815454000517!GO:0019798;procollagen-proline dioxygenase activity;0.00755124113800208!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00759871750032841!GO:0015631;tubulin binding;0.00798218308304813!GO:0003729;mRNA binding;0.00806205101947137!GO:0045792;negative regulation of cell size;0.00821603434029699!GO:0031901;early endosome membrane;0.00877010463333869!GO:0031902;late endosome membrane;0.00900636389336756!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00901168603169711!GO:0005096;GTPase activator activity;0.00903400768724406!GO:0003746;translation elongation factor activity;0.00905799135687863!GO:0032940;secretion by cell;0.00948299160197416!GO:0046519;sphingoid metabolic process;0.00948299160197416!GO:0033673;negative regulation of kinase activity;0.00951447147098225!GO:0006469;negative regulation of protein kinase activity;0.00951447147098225!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00966963819946759!GO:0035258;steroid hormone receptor binding;0.00977477879729652!GO:0008139;nuclear localization sequence binding;0.00977477879729652!GO:0008312;7S RNA binding;0.00981334614844238!GO:0030308;negative regulation of cell growth;0.00989688891227542!GO:0006839;mitochondrial transport;0.0100866772505089!GO:0051348;negative regulation of transferase activity;0.0103069047769931!GO:0044433;cytoplasmic vesicle part;0.0105296967155533!GO:0006383;transcription from RNA polymerase III promoter;0.010969729230757!GO:0046489;phosphoinositide biosynthetic process;0.0112204049077122!GO:0006417;regulation of translation;0.0119187383711961!GO:0003711;transcription elongation regulator activity;0.0121234774873166!GO:0007006;mitochondrial membrane organization and biogenesis;0.0123785731805398!GO:0006402;mRNA catabolic process;0.0126143594014323!GO:0051540;metal cluster binding;0.0128372489016969!GO:0051536;iron-sulfur cluster binding;0.0128372489016969!GO:0030125;clathrin vesicle coat;0.0131698925418743!GO:0030665;clathrin coated vesicle membrane;0.0131698925418743!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0133208597964476!GO:0012506;vesicle membrane;0.0133451017604743!GO:0006354;RNA elongation;0.0133682258305924!GO:0051287;NAD binding;0.0134035316644984!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0134194864814945!GO:0006672;ceramide metabolic process;0.013463605955282!GO:0016860;intramolecular oxidoreductase activity;0.0135069800764296!GO:0044437;vacuolar part;0.0135712898039743!GO:0007034;vacuolar transport;0.0139152198815626!GO:0016363;nuclear matrix;0.0144198170304732!GO:0004674;protein serine/threonine kinase activity;0.0152984374076015!GO:0016272;prefoldin complex;0.0153679764751773!GO:0030119;AP-type membrane coat adaptor complex;0.0153814125185826!GO:0006007;glucose catabolic process;0.0157812719748227!GO:0005862;muscle thin filament tropomyosin;0.0158764734729913!GO:0007030;Golgi organization and biogenesis;0.0159777474251448!GO:0030041;actin filament polymerization;0.0160657577013264!GO:0045941;positive regulation of transcription;0.0160691385911877!GO:0004228;gelatinase A activity;0.0161366928516792!GO:0001955;blood vessel maturation;0.0161366928516792!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.016760731543404!GO:0015002;heme-copper terminal oxidase activity;0.016760731543404!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.016760731543404!GO:0004129;cytochrome-c oxidase activity;0.016760731543404!GO:0051128;regulation of cellular component organization and biogenesis;0.0172335992834428!GO:0045892;negative regulation of transcription, DNA-dependent;0.0175617290280667!GO:0051272;positive regulation of cell motility;0.0176371280698607!GO:0040017;positive regulation of locomotion;0.0176371280698607!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0183302440947816!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0183302440947816!GO:0003756;protein disulfide isomerase activity;0.0185230168244565!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0185230168244565!GO:0006595;polyamine metabolic process;0.0197518457880957!GO:0051270;regulation of cell motility;0.0199515789149261!GO:0006607;NLS-bearing substrate import into nucleus;0.0200820579867656!GO:0005869;dynactin complex;0.0202981497307046!GO:0050811;GABA receptor binding;0.0205043470696233!GO:0043022;ribosome binding;0.0207862816151073!GO:0006497;protein amino acid lipidation;0.0209467856897033!GO:0030503;regulation of cell redox homeostasis;0.0213876164103669!GO:0043488;regulation of mRNA stability;0.0215340118422881!GO:0043487;regulation of RNA stability;0.0215340118422881!GO:0031529;ruffle organization and biogenesis;0.0215340118422881!GO:0000339;RNA cap binding;0.0215340118422881!GO:0022408;negative regulation of cell-cell adhesion;0.0221581730220559!GO:0005581;collagen;0.0222659816731885!GO:0045893;positive regulation of transcription, DNA-dependent;0.0225719184111137!GO:0000059;protein import into nucleus, docking;0.0225719184111137!GO:0001516;prostaglandin biosynthetic process;0.0225719184111137!GO:0046457;prostanoid biosynthetic process;0.0225719184111137!GO:0006778;porphyrin metabolic process;0.0226771124653985!GO:0033013;tetrapyrrole metabolic process;0.0226771124653985!GO:0000096;sulfur amino acid metabolic process;0.0228159856146653!GO:0005765;lysosomal membrane;0.0230287674392124!GO:0001666;response to hypoxia;0.0234181558680123!GO:0031625;ubiquitin protein ligase binding;0.0234181558680123!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0238110842567176!GO:0000209;protein polyubiquitination;0.0242034731533137!GO:0019318;hexose metabolic process;0.0242503414850989!GO:0006739;NADP metabolic process;0.0248958043627632!GO:0035035;histone acetyltransferase binding;0.0250419863656135!GO:0008243;plasminogen activator activity;0.0262037490805347!GO:0051101;regulation of DNA binding;0.0263750035027595!GO:0030131;clathrin adaptor complex;0.0263750035027595!GO:0005832;chaperonin-containing T-complex;0.0263750035027595!GO:0001872;zymosan binding;0.0265709692982688!GO:0001878;response to yeast;0.0265709692982688!GO:0051539;4 iron, 4 sulfur cluster binding;0.026633942081072!GO:0000049;tRNA binding;0.0268487510068507!GO:0030433;ER-associated protein catabolic process;0.0268715179308321!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0268715179308321!GO:0019752;carboxylic acid metabolic process;0.0272545315779152!GO:0008234;cysteine-type peptidase activity;0.027267806685673!GO:0033559;unsaturated fatty acid metabolic process;0.0275354703234291!GO:0006636;unsaturated fatty acid biosynthetic process;0.0275354703234291!GO:0001952;regulation of cell-matrix adhesion;0.0276307694328688!GO:0004287;prolyl oligopeptidase activity;0.0279641577798444!GO:0050662;coenzyme binding;0.0281101488246078!GO:0030032;lamellipodium biogenesis;0.028149204628132!GO:0003684;damaged DNA binding;0.0284870825766828!GO:0005637;nuclear inner membrane;0.0293860228066231!GO:0005996;monosaccharide metabolic process;0.0295350243463164!GO:0009889;regulation of biosynthetic process;0.0295595758844018!GO:0031326;regulation of cellular biosynthetic process;0.0295595758844018!GO:0006082;organic acid metabolic process;0.0298634591290482!GO:0045926;negative regulation of growth;0.0298949754560908!GO:0005684;U2-dependent spliceosome;0.030072795286211!GO:0008147;structural constituent of bone;0.0305151196683624!GO:0006769;nicotinamide metabolic process;0.0306416242379323!GO:0003779;actin binding;0.0306416242379323!GO:0031124;mRNA 3'-end processing;0.0314003201982873!GO:0030384;phosphoinositide metabolic process;0.0320083449643207!GO:0001953;negative regulation of cell-matrix adhesion;0.0320221394764912!GO:0030521;androgen receptor signaling pathway;0.0320221394764912!GO:0022406;membrane docking;0.0323473671613374!GO:0048278;vesicle docking;0.0323473671613374!GO:0005801;cis-Golgi network;0.0325538679825876!GO:0016125;sterol metabolic process;0.0329267342885689!GO:0006790;sulfur metabolic process;0.0329600235247176!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0331486575369285!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0331486575369285!GO:0008154;actin polymerization and/or depolymerization;0.033712013672488!GO:0008180;signalosome;0.0337261586388869!GO:0006611;protein export from nucleus;0.0342946491972164!GO:0006289;nucleotide-excision repair;0.0344110594864697!GO:0009112;nucleobase metabolic process;0.0347802974369912!GO:0006984;ER-nuclear signaling pathway;0.0351750512088794!GO:0030140;trans-Golgi network transport vesicle;0.0360597469554404!GO:0006518;peptide metabolic process;0.0360597469554404!GO:0006767;water-soluble vitamin metabolic process;0.0360597469554404!GO:0042168;heme metabolic process;0.0364908669575315!GO:0030984;kininogen binding;0.0365648264074684!GO:0004213;cathepsin B activity;0.0365648264074684!GO:0015248;sterol transporter activity;0.0368473602605428!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0368958747068642!GO:0030833;regulation of actin filament polymerization;0.036917748826693!GO:0051329;interphase of mitotic cell cycle;0.0369990873053113!GO:0006066;alcohol metabolic process;0.0370070836051823!GO:0007041;lysosomal transport;0.0389454534896257!GO:0042158;lipoprotein biosynthetic process;0.0394256382192251!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0396504106587264!GO:0030145;manganese ion binding;0.0398096137437445!GO:0043433;negative regulation of transcription factor activity;0.0406984155668321!GO:0043407;negative regulation of MAP kinase activity;0.0408367993889011!GO:0016584;nucleosome positioning;0.0409850353445562!GO:0009116;nucleoside metabolic process;0.0410619686374856!GO:0030508;thiol-disulfide exchange intermediate activity;0.0410619686374856!GO:0051336;regulation of hydrolase activity;0.0410831841017712!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0412067916383343!GO:0007021;tubulin folding;0.0416297428144999!GO:0006118;electron transport;0.0421508153770814!GO:0030913;paranodal junction assembly;0.0428393454817356!GO:0032288;myelin formation;0.0428393454817356!GO:0006458;'de novo' protein folding;0.0428393454817356!GO:0051084;'de novo' posttranslational protein folding;0.0428393454817356!GO:0040011;locomotion;0.0434816786431052!GO:0030880;RNA polymerase complex;0.0438105606277722!GO:0043065;positive regulation of apoptosis;0.0442535363793568!GO:0019222;regulation of metabolic process;0.0445778110751976!GO:0006904;vesicle docking during exocytosis;0.0446907838736379!GO:0006401;RNA catabolic process;0.0453459803660395!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0453459803660395!GO:0005099;Ras GTPase activator activity;0.0455077054084299!GO:0006643;membrane lipid metabolic process;0.0458599271679855!GO:0008022;protein C-terminus binding;0.0461641110936577!GO:0006897;endocytosis;0.0462064710137733!GO:0010324;membrane invagination;0.0462064710137733!GO:0046426;negative regulation of JAK-STAT cascade;0.0462064710137733!GO:0000287;magnesium ion binding;0.0463866379009081!GO:0008320;protein transmembrane transporter activity;0.0464305490005898!GO:0005520;insulin-like growth factor binding;0.0466047829345986!GO:0007242;intracellular signaling cascade;0.0467035446330523!GO:0040012;regulation of locomotion;0.0467035446330523!GO:0043068;positive regulation of programmed cell death;0.0467035446330523!GO:0044255;cellular lipid metabolic process;0.0470858764315261!GO:0050681;androgen receptor binding;0.0471577721385925!GO:0045334;clathrin-coated endocytic vesicle;0.0483269542579058!GO:0030911;TPR domain binding;0.049380496446491!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0494849269594463!GO:0010257;NADH dehydrogenase complex assembly;0.0494849269594463!GO:0033108;mitochondrial respiratory chain complex assembly;0.0494849269594463!GO:0051301;cell division;0.0497903059375421!GO:0016301;kinase activity;0.0497903059375421 | |||
|sample_id=11842 | |sample_id=11842 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=bone marrow | |sample_tissue=bone marrow | ||
|top_motifs=PAX1,9:1.68678957354;PPARG:1.47599849058;HIF1A:1.4565334963;ALX4:1.44660158498;GZF1:1.21052328684;RXR{A,B,G}:1.11769454398;TAL1_TCF{3,4,12}:1.10977220969;ZNF238:1.03449498218;UFEwm:1.00705819997;ZBTB6:0.962033212506;HSF1,2:0.961999382956;ATF6:0.94073670851;NFE2L1:0.936721720626;SRF:0.910583350706;bHLH_family:0.863635600146;TLX2:0.860571698448;ESR1:0.840287113505;PAX8:0.838569597046;NFATC1..3:0.833105186468;TEAD1:0.830625380704;RXRA_VDR{dimer}:0.79600841751;TLX1..3_NFIC{dimer}:0.79129651063;LHX3,4:0.790481180178;HMX1:0.770202575932;ALX1:0.713559365663;AHR_ARNT_ARNT2:0.686315535695;TFAP4:0.684683158551;HOX{A4,D4}:0.680927118079;HLF:0.660625878919;POU3F1..4:0.65744411928;GTF2A1,2:0.635058090863;PAX4:0.607328107601;MAFB:0.589040431058;MYFfamily:0.580756747209;HMGA1,2:0.574722552574;PRDM1:0.550375306963;NR3C1:0.531049672041;HOX{A5,B5}:0.505583874018;EVI1:0.495367883888;ONECUT1,2:0.492460249167;NHLH1,2:0.490740984774;ZIC1..3:0.477447492166;TP53:0.473655144751;SMAD1..7,9:0.473245519476;BACH2:0.450936554477;FOS_FOS{B,L1}_JUN{B,D}:0.45071297458;NFE2L2:0.441308027216;TFCP2:0.418002603898;MYBL2:0.401455421928;GLI1..3:0.39445327537;EN1,2:0.389274614868;AR:0.368145635924;MTE{core}:0.363366740365;HES1:0.338365026135;NANOG{mouse}:0.329323266126;GTF2I:0.309371058981;FOSL2:0.294514690969;EBF1:0.289400099827;TBP:0.281999011565;RFX1:0.277335476684;ZBTB16:0.272342644368;PITX1..3:0.266806662415;NFIX:0.262177931149;NR6A1:0.239529332607;NKX2-2,8:0.229130895674;TFAP2{A,C}:0.228306250891;SREBF1,2:0.226551658002;HBP1_HMGB_SSRP1_UBTF:0.226113275938;STAT5{A,B}:0.197862681956;CDX1,2,4:0.188358681015;XCPE1{core}:0.188171494256;FOXD3:0.180104171172;MEF2{A,B,C,D}:0.178561594813;IKZF1:0.169886508866;TFAP2B:0.162946296124;HNF1A:0.153284868502;GFI1B:0.130492049508;BPTF:0.130079403087;NKX3-1:0.12627822775;NFE2:0.121396425834;MZF1:0.108887985175;GATA4:0.101377702035;ZFP161:0.0933406626211;SPZ1:0.0895203250322;NKX3-2:0.0875486052762;PAX6:0.0754011462998;PATZ1:0.0516288958544;EGR1..3:0.0471038090165;ZNF384:0.0295483721703;CDC5L:0.0206229248267;RUNX1..3:0.0122095616734;KLF4:0.0114813915066;XBP1:0.011403834783;PAX3,7:0.00958564553183;NKX2-1,4:-0.000548436578107;SP1:-0.00407609065248;CEBPA,B_DDIT3:-0.02241768133;PAX2:-0.0520218958231;LEF1_TCF7_TCF7L1,2:-0.0785684911797;HIC1:-0.0844639326467;IRF1,2:-0.0865937650472;FOX{I1,J2}:-0.0892399956154;ESRRA:-0.0892428257849;TEF:-0.0909333207085;MED-1{core}:-0.0932662552968;FOXL1:-0.103620224397;JUN:-0.104822881302;SOX17:-0.116849423399;MAZ:-0.129883606975;SOX2:-0.139027141896;ZNF423:-0.139851479002;ATF2:-0.148126693335;TBX4,5:-0.166496902908;RREB1:-0.167887827138;ATF5_CREB3:-0.181774979136;CREB1:-0.185733192842;NFIL3:-0.188343650332;NFKB1_REL_RELA:-0.191373805136;ADNP_IRX_SIX_ZHX:-0.192492488839;MYOD1:-0.19732750821;FOXN1:-0.204466929131;ZNF148:-0.235600306696;POU6F1:-0.24369078754;SOX5:-0.246371182222;REST:-0.249545744809;HNF4A_NR2F1,2:-0.271206379337;NKX6-1,2:-0.27836940412;STAT2,4,6:-0.283183239351;AIRE:-0.292324618265;FOX{D1,D2}:-0.298722633757;EP300:-0.327124884202;NR1H4:-0.337622698064;GATA6:-0.340730836638;ZNF143:-0.342972071323;TFDP1:-0.357778172709;ATF4:-0.358102462772;DBP:-0.359980031691;IRF7:-0.394869480425;TOPORS:-0.398649829342;HAND1,2:-0.410122822637;NRF1:-0.4118212582;NANOG:-0.431634721794;STAT1,3:-0.435001833591;ARID5B:-0.439315352512;CRX:-0.448345703032;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.457904280892;POU1F1:-0.460775062124;PBX1:-0.465133334936;ETS1,2:-0.479786014168;FOXP1:-0.485981480178;POU5F1:-0.486248067904;MTF1:-0.505852362002;FOXM1:-0.516733588987;RFX2..5_RFXANK_RFXAP:-0.527726015862;DMAP1_NCOR{1,2}_SMARC:-0.549162887608;POU2F1..3:-0.560235179024;FOXQ1:-0.564063435107;PAX5:-0.582443398516;LMO2:-0.596551204956;ZEB1:-0.59675387572;ELF1,2,4:-0.602742891174;SPI1:-0.604318394503;GCM1,2:-0.607091484568;ELK1,4_GABP{A,B1}:-0.619285927192;SPIB:-0.625549333231;MYB:-0.646606883516;HOX{A6,A7,B6,B7}:-0.658693887255;E2F1..5:-0.662174466897;YY1:-0.667832374112;OCT4_SOX2{dimer}:-0.677240450713;PRRX1,2:-0.679389334712;HOXA9_MEIS1:-0.681448558659;SNAI1..3:-0.686963950297;IKZF2:-0.69192583375;GFI1:-0.694378863861;TGIF1:-0.70555483138;FOXP3:-0.718802998349;FOX{F1,F2,J1}:-0.73287662825;RORA:-0.776240641474;CUX2:-0.786416937105;VSX1,2:-0.809885038082;FOXO1,3,4:-0.919626742525;BREu{core}:-0.921535721511;NFY{A,B,C}:-0.934887321879;FOXA2:-0.938418514338;T:-0.971155305408;SOX{8,9,10}:-0.998733246924;NKX2-3_NKX2-5:-1.02605130856;RBPJ:-1.1276142834;NR5A1,2:-1.50172366537;PDX1:-1.63938776078;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.68663455915 | |top_motifs=PAX1,9:1.68678957354;PPARG:1.47599849058;HIF1A:1.4565334963;ALX4:1.44660158498;GZF1:1.21052328684;RXR{A,B,G}:1.11769454398;TAL1_TCF{3,4,12}:1.10977220969;ZNF238:1.03449498218;UFEwm:1.00705819997;ZBTB6:0.962033212506;HSF1,2:0.961999382956;ATF6:0.94073670851;NFE2L1:0.936721720626;SRF:0.910583350706;bHLH_family:0.863635600146;TLX2:0.860571698448;ESR1:0.840287113505;PAX8:0.838569597046;NFATC1..3:0.833105186468;TEAD1:0.830625380704;RXRA_VDR{dimer}:0.79600841751;TLX1..3_NFIC{dimer}:0.79129651063;LHX3,4:0.790481180178;HMX1:0.770202575932;ALX1:0.713559365663;AHR_ARNT_ARNT2:0.686315535695;TFAP4:0.684683158551;HOX{A4,D4}:0.680927118079;HLF:0.660625878919;POU3F1..4:0.65744411928;GTF2A1,2:0.635058090863;PAX4:0.607328107601;MAFB:0.589040431058;MYFfamily:0.580756747209;HMGA1,2:0.574722552574;PRDM1:0.550375306963;NR3C1:0.531049672041;HOX{A5,B5}:0.505583874018;EVI1:0.495367883888;ONECUT1,2:0.492460249167;NHLH1,2:0.490740984774;ZIC1..3:0.477447492166;TP53:0.473655144751;SMAD1..7,9:0.473245519476;BACH2:0.450936554477;FOS_FOS{B,L1}_JUN{B,D}:0.45071297458;NFE2L2:0.441308027216;TFCP2:0.418002603898;MYBL2:0.401455421928;GLI1..3:0.39445327537;EN1,2:0.389274614868;AR:0.368145635924;MTE{core}:0.363366740365;HES1:0.338365026135;NANOG{mouse}:0.329323266126;GTF2I:0.309371058981;FOSL2:0.294514690969;EBF1:0.289400099827;TBP:0.281999011565;RFX1:0.277335476684;ZBTB16:0.272342644368;PITX1..3:0.266806662415;NFIX:0.262177931149;NR6A1:0.239529332607;NKX2-2,8:0.229130895674;TFAP2{A,C}:0.228306250891;SREBF1,2:0.226551658002;HBP1_HMGB_SSRP1_UBTF:0.226113275938;STAT5{A,B}:0.197862681956;CDX1,2,4:0.188358681015;XCPE1{core}:0.188171494256;FOXD3:0.180104171172;MEF2{A,B,C,D}:0.178561594813;IKZF1:0.169886508866;TFAP2B:0.162946296124;HNF1A:0.153284868502;GFI1B:0.130492049508;BPTF:0.130079403087;NKX3-1:0.12627822775;NFE2:0.121396425834;MZF1:0.108887985175;GATA4:0.101377702035;ZFP161:0.0933406626211;SPZ1:0.0895203250322;NKX3-2:0.0875486052762;PAX6:0.0754011462998;PATZ1:0.0516288958544;EGR1..3:0.0471038090165;ZNF384:0.0295483721703;CDC5L:0.0206229248267;RUNX1..3:0.0122095616734;KLF4:0.0114813915066;XBP1:0.011403834783;PAX3,7:0.00958564553183;NKX2-1,4:-0.000548436578107;SP1:-0.00407609065248;CEBPA,B_DDIT3:-0.02241768133;PAX2:-0.0520218958231;LEF1_TCF7_TCF7L1,2:-0.0785684911797;HIC1:-0.0844639326467;IRF1,2:-0.0865937650472;FOX{I1,J2}:-0.0892399956154;ESRRA:-0.0892428257849;TEF:-0.0909333207085;MED-1{core}:-0.0932662552968;FOXL1:-0.103620224397;JUN:-0.104822881302;SOX17:-0.116849423399;MAZ:-0.129883606975;SOX2:-0.139027141896;ZNF423:-0.139851479002;ATF2:-0.148126693335;TBX4,5:-0.166496902908;RREB1:-0.167887827138;ATF5_CREB3:-0.181774979136;CREB1:-0.185733192842;NFIL3:-0.188343650332;NFKB1_REL_RELA:-0.191373805136;ADNP_IRX_SIX_ZHX:-0.192492488839;MYOD1:-0.19732750821;FOXN1:-0.204466929131;ZNF148:-0.235600306696;POU6F1:-0.24369078754;SOX5:-0.246371182222;REST:-0.249545744809;HNF4A_NR2F1,2:-0.271206379337;NKX6-1,2:-0.27836940412;STAT2,4,6:-0.283183239351;AIRE:-0.292324618265;FOX{D1,D2}:-0.298722633757;EP300:-0.327124884202;NR1H4:-0.337622698064;GATA6:-0.340730836638;ZNF143:-0.342972071323;TFDP1:-0.357778172709;ATF4:-0.358102462772;DBP:-0.359980031691;IRF7:-0.394869480425;TOPORS:-0.398649829342;HAND1,2:-0.410122822637;NRF1:-0.4118212582;NANOG:-0.431634721794;STAT1,3:-0.435001833591;ARID5B:-0.439315352512;CRX:-0.448345703032;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.457904280892;POU1F1:-0.460775062124;PBX1:-0.465133334936;ETS1,2:-0.479786014168;FOXP1:-0.485981480178;POU5F1:-0.486248067904;MTF1:-0.505852362002;FOXM1:-0.516733588987;RFX2..5_RFXANK_RFXAP:-0.527726015862;DMAP1_NCOR{1,2}_SMARC:-0.549162887608;POU2F1..3:-0.560235179024;FOXQ1:-0.564063435107;PAX5:-0.582443398516;LMO2:-0.596551204956;ZEB1:-0.59675387572;ELF1,2,4:-0.602742891174;SPI1:-0.604318394503;GCM1,2:-0.607091484568;ELK1,4_GABP{A,B1}:-0.619285927192;SPIB:-0.625549333231;MYB:-0.646606883516;HOX{A6,A7,B6,B7}:-0.658693887255;E2F1..5:-0.662174466897;YY1:-0.667832374112;OCT4_SOX2{dimer}:-0.677240450713;PRRX1,2:-0.679389334712;HOXA9_MEIS1:-0.681448558659;SNAI1..3:-0.686963950297;IKZF2:-0.69192583375;GFI1:-0.694378863861;TGIF1:-0.70555483138;FOXP3:-0.718802998349;FOX{F1,F2,J1}:-0.73287662825;RORA:-0.776240641474;CUX2:-0.786416937105;VSX1,2:-0.809885038082;FOXO1,3,4:-0.919626742525;BREu{core}:-0.921535721511;NFY{A,B,C}:-0.934887321879;FOXA2:-0.938418514338;T:-0.971155305408;SOX{8,9,10}:-0.998733246924;NKX2-3_NKX2-5:-1.02605130856;RBPJ:-1.1276142834;NR5A1,2:-1.50172366537;PDX1:-1.63938776078;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.68663455915 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11842-124H6;search_select_hide=table117:FF:11842-124H6 | |||
}} | }} | ||
Latest revision as of 18:23, 4 June 2020
| Name: | mesenchymal precursor cell - ovarian cancer right ovary, donor3 (SOC-57-02-G) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13507 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13507
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13507
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.862 |
| 10 | 10 | 0.533 |
| 100 | 100 | 0.315 |
| 101 | 101 | 0.0954 |
| 102 | 102 | 0.147 |
| 103 | 103 | 0.917 |
| 104 | 104 | 0.99 |
| 105 | 105 | 0.178 |
| 106 | 106 | 0.0677 |
| 107 | 107 | 0.159 |
| 108 | 108 | 0.484 |
| 109 | 109 | 0.989 |
| 11 | 11 | 0.787 |
| 110 | 110 | 0.35 |
| 111 | 111 | 0.35 |
| 112 | 112 | 0.266 |
| 113 | 113 | 0.0402 |
| 114 | 114 | 0.181 |
| 115 | 115 | 0.194 |
| 116 | 116 | 0.343 |
| 117 | 117 | 0.635 |
| 118 | 118 | 0.638 |
| 119 | 119 | 0.318 |
| 12 | 12 | 0.225 |
| 120 | 120 | 0.532 |
| 121 | 121 | 0.894 |
| 122 | 122 | 0.0304 |
| 123 | 123 | 0.0621 |
| 124 | 124 | 0.565 |
| 125 | 125 | 0.356 |
| 126 | 126 | 0.598 |
| 127 | 127 | 0.162 |
| 128 | 128 | 0.251 |
| 129 | 129 | 0.764 |
| 13 | 13 | 0.82 |
| 130 | 130 | 0.783 |
| 131 | 131 | 0.0227 |
| 132 | 132 | 0.969 |
| 133 | 133 | 0.483 |
| 134 | 134 | 0.317 |
| 135 | 135 | 0.298 |
| 136 | 136 | 0.292 |
| 137 | 137 | 0.295 |
| 138 | 138 | 0.697 |
| 139 | 139 | 0.144 |
| 14 | 14 | 0.278 |
| 140 | 140 | 0.298 |
| 141 | 141 | 0.976 |
| 142 | 142 | 0.378 |
| 143 | 143 | 0.0605 |
| 144 | 144 | 0.256 |
| 145 | 145 | 0.576 |
| 146 | 146 | 0.569 |
| 147 | 147 | 0.0723 |
| 148 | 148 | 0.64 |
| 149 | 149 | 0.0308 |
| 15 | 15 | 0.291 |
| 150 | 150 | 0.33 |
| 151 | 151 | 0.269 |
| 152 | 152 | 0.067 |
| 153 | 153 | 0.711 |
| 154 | 154 | 0.906 |
| 155 | 155 | 7.78399e-4 |
| 156 | 156 | 0.487 |
| 157 | 157 | 0.693 |
| 158 | 158 | 0.177 |
| 159 | 159 | 0.518 |
| 16 | 16 | 0.0817 |
| 160 | 160 | 0.244 |
| 161 | 161 | 0.561 |
| 162 | 162 | 0.422 |
| 163 | 163 | 0.0573 |
| 164 | 164 | 0.0441 |
| 165 | 165 | 0.882 |
| 166 | 166 | 0.0664 |
| 167 | 167 | 0.719 |
| 168 | 168 | 0.493 |
| 169 | 169 | 0.267 |
| 17 | 17 | 0.257 |
| 18 | 18 | 0.0683 |
| 19 | 19 | 0.133 |
| 2 | 2 | 0.445 |
| 20 | 20 | 0.165 |
| 21 | 21 | 0.165 |
| 22 | 22 | 0.63 |
| 23 | 23 | 0.00639 |
| 24 | 24 | 0.853 |
| 25 | 25 | 0.11 |
| 26 | 26 | 0.555 |
| 27 | 27 | 0.706 |
| 28 | 28 | 0.361 |
| 29 | 29 | 0.724 |
| 3 | 3 | 0.503 |
| 30 | 30 | 0.576 |
| 31 | 31 | 0.689 |
| 32 | 32 | 1.17313e-4 |
| 33 | 33 | 0.79 |
| 34 | 34 | 0.87 |
| 35 | 35 | 0.438 |
| 36 | 36 | 0.272 |
| 37 | 37 | 0.088 |
| 38 | 38 | 0.947 |
| 39 | 39 | 0.325 |
| 4 | 4 | 0.731 |
| 40 | 40 | 0.521 |
| 41 | 41 | 0.558 |
| 42 | 42 | 0.189 |
| 43 | 43 | 0.171 |
| 44 | 44 | 0.777 |
| 45 | 45 | 0.961 |
| 46 | 46 | 0.486 |
| 47 | 47 | 0.359 |
| 48 | 48 | 0.851 |
| 49 | 49 | 0.86 |
| 5 | 5 | 0.221 |
| 50 | 50 | 0.665 |
| 51 | 51 | 0.974 |
| 52 | 52 | 0.697 |
| 53 | 53 | 0.686 |
| 54 | 54 | 0.533 |
| 55 | 55 | 0.116 |
| 56 | 56 | 0.841 |
| 57 | 57 | 0.658 |
| 58 | 58 | 0.138 |
| 59 | 59 | 0.738 |
| 6 | 6 | 0.405 |
| 60 | 60 | 0.495 |
| 61 | 61 | 0.899 |
| 62 | 62 | 0.59 |
| 63 | 63 | 0.253 |
| 64 | 64 | 0.692 |
| 65 | 65 | 0.383 |
| 66 | 66 | 0.0317 |
| 67 | 67 | 0.257 |
| 68 | 68 | 0.677 |
| 69 | 69 | 0.913 |
| 7 | 7 | 0.0901 |
| 70 | 70 | 0.946 |
| 71 | 71 | 0.842 |
| 72 | 72 | 0.861 |
| 73 | 73 | 0.0857 |
| 74 | 74 | 0.0491 |
| 75 | 75 | 0.933 |
| 76 | 76 | 0.618 |
| 77 | 77 | 0.168 |
| 78 | 78 | 0.556 |
| 79 | 79 | 2.4936e-4 |
| 8 | 8 | 0.316 |
| 80 | 80 | 0.664 |
| 81 | 81 | 0.65 |
| 82 | 82 | 0.576 |
| 83 | 83 | 0.841 |
| 84 | 84 | 0.588 |
| 85 | 85 | 7.25998e-4 |
| 86 | 86 | 0.167 |
| 87 | 87 | 0.73 |
| 88 | 88 | 0.693 |
| 89 | 89 | 0.392 |
| 9 | 9 | 0.253 |
| 90 | 90 | 0.0624 |
| 91 | 91 | 0.244 |
| 92 | 92 | 0.0412 |
| 93 | 93 | 0.767 |
| 94 | 94 | 0.368 |
| 95 | 95 | 0.776 |
| 96 | 96 | 0.99 |
| 97 | 97 | 0.108 |
| 98 | 98 | 0.331 |
| 99 | 99 | 0.0382 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13507
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002090 technical replicate
EFO:0002091 biological replicate
FF:0000275 human mesenchymal precursor cell- ovarian cancer-right ovary sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002118 (right ovary)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000275 (human mesenchymal precursor cell- ovarian cancer-right ovary sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
