FF:11843-124H7: Difference between revisions

Latest revision as of 18:23, 4 June 2020

Name:	serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1
Species:	Human (Homo sapiens)
Library ID:	CNhs13508
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005193

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13508		CAGE		DRX007999		DRR008871

Accession ID Hg19

Library id		BAM		CTSS
CNhs13508		DRZ000296		DRZ001681

Accession ID Hg38

Library id		BAM		CTSS
CNhs13508		DRZ011646		DRZ013031

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0787
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.112
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0352
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0645
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0301
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.169
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.177
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.728
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0512
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.117
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.514
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.121
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0358
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0749
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.501
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13508

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.527
MA0003.1	MA0003.1	0.191
MA0004.1	MA0004.1	0.856
MA0006.1	MA0006.1	0.253
MA0007.1	MA0007.1	0.0122
MA0009.1	MA0009.1	0.341
MA0014.1	MA0014.1	0.00245
MA0017.1	MA0017.1	0.753
MA0018.2	MA0018.2	0.0393
MA0019.1	MA0019.1	0.542
MA0024.1	MA0024.1	0.00573
MA0025.1	MA0025.1	0.563
MA0027.1	MA0027.1	0.693
MA0028.1	MA0028.1	0.331
MA0029.1	MA0029.1	0.06
MA0030.1	MA0030.1	0.381
MA0031.1	MA0031.1	0.633
MA0035.2	MA0035.2	0.494
MA0038.1	MA0038.1	0.449
MA0039.2	MA0039.2	3.10355e-4
MA0040.1	MA0040.1	0.753
MA0041.1	MA0041.1	0.51
MA0042.1	MA0042.1	0.764
MA0043.1	MA0043.1	0.111
MA0046.1	MA0046.1	0.723
MA0047.2	MA0047.2	0.648
MA0048.1	MA0048.1	0.433
MA0050.1	MA0050.1	0.0621
MA0051.1	MA0051.1	0.456
MA0052.1	MA0052.1	0.117
MA0055.1	MA0055.1	0.782
MA0057.1	MA0057.1	0.355
MA0058.1	MA0058.1	0.73
MA0059.1	MA0059.1	0.367
MA0060.1	MA0060.1	0.166
MA0061.1	MA0061.1	0.0905
MA0062.2	MA0062.2	0.00131
MA0065.2	MA0065.2	0.395
MA0066.1	MA0066.1	0.424
MA0067.1	MA0067.1	0.527
MA0068.1	MA0068.1	2.05393e-4
MA0069.1	MA0069.1	0.245
MA0070.1	MA0070.1	0.815
MA0071.1	MA0071.1	0.146
MA0072.1	MA0072.1	0.583
MA0073.1	MA0073.1	0.624
MA0074.1	MA0074.1	0.0448
MA0076.1	MA0076.1	0.0126
MA0077.1	MA0077.1	0.164
MA0078.1	MA0078.1	0.971
MA0079.2	MA0079.2	0.379
MA0080.2	MA0080.2	4.33007e-7
MA0081.1	MA0081.1	0.00288
MA0083.1	MA0083.1	0.649
MA0084.1	MA0084.1	0.281
MA0087.1	MA0087.1	0.55
MA0088.1	MA0088.1	0.57
MA0090.1	MA0090.1	0.667
MA0091.1	MA0091.1	0.777
MA0092.1	MA0092.1	0.799
MA0093.1	MA0093.1	0.778
MA0099.2	MA0099.2	1.21921e-23
MA0100.1	MA0100.1	0.66
MA0101.1	MA0101.1	0.00321
MA0102.2	MA0102.2	0.418
MA0103.1	MA0103.1	0.0302
MA0104.2	MA0104.2	0.939
MA0105.1	MA0105.1	0.261
MA0106.1	MA0106.1	0.525
MA0107.1	MA0107.1	0.00134
MA0108.2	MA0108.2	0.026
MA0111.1	MA0111.1	0.547
MA0112.2	MA0112.2	0.349
MA0113.1	MA0113.1	0.806
MA0114.1	MA0114.1	0.977
MA0115.1	MA0115.1	0.145
MA0116.1	MA0116.1	0.992
MA0117.1	MA0117.1	0.725
MA0119.1	MA0119.1	0.405
MA0122.1	MA0122.1	0.699
MA0124.1	MA0124.1	0.86
MA0125.1	MA0125.1	0.644
MA0131.1	MA0131.1	0.674
MA0135.1	MA0135.1	0.178
MA0136.1	MA0136.1	1.75766e-7
MA0137.2	MA0137.2	0.207
MA0138.2	MA0138.2	0.339
MA0139.1	MA0139.1	0.917
MA0140.1	MA0140.1	0.872
MA0141.1	MA0141.1	0.0401
MA0142.1	MA0142.1	0.801
MA0143.1	MA0143.1	0.539
MA0144.1	MA0144.1	0.523
MA0145.1	MA0145.1	0.306
MA0146.1	MA0146.1	0.795
MA0147.1	MA0147.1	0.847
MA0148.1	MA0148.1	0.842
MA0149.1	MA0149.1	0.0268
MA0150.1	MA0150.1	0.00205
MA0152.1	MA0152.1	0.104
MA0153.1	MA0153.1	0.0424
MA0154.1	MA0154.1	0.9
MA0155.1	MA0155.1	0.937
MA0156.1	MA0156.1	3.01825e-5
MA0157.1	MA0157.1	0.859
MA0159.1	MA0159.1	0.0849
MA0160.1	MA0160.1	0.0241
MA0162.1	MA0162.1	0.654
MA0163.1	MA0163.1	0.0574
MA0164.1	MA0164.1	0.196
MA0258.1	MA0258.1	0.219
MA0259.1	MA0259.1	0.084

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13508

Novel motif	Logo	P-value
1	1	0.419
10	10	0.798
100	100	0.0228
101	101	0.779
102	102	0.778
103	103	0.342
104	104	0.501
105	105	0.906
106	106	0.246
107	107	0.549
108	108	0.615
109	109	0.0382
11	11	0.632
110	110	0.429
111	111	0.315
112	112	0.268
113	113	0.163
114	114	0.219
115	115	0.81
116	116	0.885
117	117	0.665
118	118	0.108
119	119	0.411
12	12	0.301
120	120	0.166
121	121	0.825
122	122	0.986
123	123	0.0807
124	124	0.547
125	125	0.229
126	126	0.705
127	127	0.0612
128	128	0.234
129	129	0.452
13	13	0.0657
130	130	0.792
131	131	0.672
132	132	0.492
133	133	0.0123
134	134	0.743
135	135	0.516
136	136	0.293
137	137	0.861
138	138	0.373
139	139	0.717
14	14	0.525
140	140	0.545
141	141	0.861
142	142	0.884
143	143	0.023
144	144	0.114
145	145	0.884
146	146	0.98
147	147	0.169
148	148	0.657
149	149	0.597
15	15	0.0282
150	150	0.212
151	151	0.949
152	152	0.0285
153	153	0.671
154	154	0.771
155	155	0.537
156	156	0.0565
157	157	0.678
158	158	0.835
159	159	0.738
16	16	0.342
160	160	0.956
161	161	0.782
162	162	0.387
163	163	0.268
164	164	0.983
165	165	0.904
166	166	0.327
167	167	0.0899
168	168	0.866
169	169	0.8
17	17	0.994
18	18	0.11
19	19	0.589
2	2	0.254
20	20	0.16
21	21	0.609
22	22	0.74
23	23	0.143
24	24	0.0376
25	25	0.668
26	26	0.292
27	27	0.312
28	28	0.61
29	29	0.131
3	3	0.825
30	30	0.857
31	31	0.985
32	32	0.276
33	33	0.00224
34	34	0.0242
35	35	0.913
36	36	0.39
37	37	0.0214
38	38	0.578
39	39	0.2
4	4	0.0746
40	40	0.0109
41	41	0.955
42	42	0.808
43	43	0.122
44	44	0.0184
45	45	0.679
46	46	0.286
47	47	0.916
48	48	0.869
49	49	0.2
5	5	0.279
50	50	0.411
51	51	0.815
52	52	0.238
53	53	0.0208
54	54	0.948
55	55	0.667
56	56	0.723
57	57	0.974
58	58	0.73
59	59	0.793
6	6	0.843
60	60	0.142
61	61	0.783
62	62	0.935
63	63	0.911
64	64	0.47
65	65	0.249
66	66	1.82374e-4
67	67	0.542
68	68	0.301
69	69	0.413
7	7	0.305
70	70	0.173
71	71	0.378
72	72	0.706
73	73	0.0223
74	74	0.793
75	75	0.854
76	76	0.216
77	77	0.432
78	78	0.452
79	79	0.585
8	8	0.0316
80	80	0.871
81	81	0.64
82	82	0.56
83	83	0.0162
84	84	0.921
85	85	0.0848
86	86	0.844
87	87	0.00664
88	88	0.997
89	89	0.869
9	9	0.414
90	90	0.654
91	91	0.836
92	92	0.864
93	93	0.919
94	94	0.941
95	95	0.0585
96	96	0.591
97	97	0.509
98	98	0.661
99	99	0.706

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13508

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0001746 development or differentiation design
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000350 experimentally modified sample
FF:0103803 serous adenocarcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0103803 (serous adenocarcinoma cell line sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100658 (uterine adenocarcinoma cell sample)
0101555 (endometrial cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0005795,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0006598,UBERON:0002532,UBERON:0003100,UBERON:0000474,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00005193
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002321,CL:0002320,CL:0000063,CL:0000066,CL:0002371,CL:0000219,CL:0000499,CL:0000220,CL:0000004,CL:0000134,CL:0000255,CL:0002076,CL:0002149,CL:0002255,CL:0000223
+|accession_numbers=CAGE;DRX007999;DRR008871;DRZ000296;DRZ001681;DRZ011646;DRZ013031
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:3001
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000350,FF:0103803,FF:0100297,FF:0101120,FF:0100167,FF:0100658,FF:0101555
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.98!95.54!PAX8;;chr8:55370487..55370503,+!p1@SOX17!1.64!42.19!SOX17;;chr17:46675558..46675577,-!p2@HOXB6!1.56!35.67!HOXB6;;chr19:3574330..3574393,+!p2@HMG20B!1.34!21.09!HMG20B;;chr1:201979743..201979762,+!p1@ELF3!1.34!20.78!ELF3;;chr19:45971246..45971265,+!p1@FOSB!1.29!333.16!FOSB;;chr17:46682321..46682362,-!p1@HOXB6!1.29!18.30!HOXB6;;chr3:5021268..5021282,+!p4@BHLHE40!1.25!34.12!BHLHE40;;chr8:72756063..72756125,-!p1@MSC!1.24!32.88!MSC;;chr20:2673383..2673441,+!p1@EBF4!1.22!24.82!EBF4;;chr1:201979703..201979721,+!p2@ELF3!1.21!15.20!ELF3;;chr17:46692624..46692659,-!p3@HOXB8!1.16!13.34!HOXB8;;chr17:46687959..46688007,-!p2@HOXB7!1.14!17.68!HOXB7;;chr1:37940170..37940190,+!p1@ZC3H12A!1.13!154.48!ZC3H12A;;chr17:46688334..46688385,-!p1@HOXB7!1.11!17.06!HOXB7;;chr17:38256822..38256851,-!p1@NR1D1!1.06!83.45!NR1D1;;chr3:5021113..5021180,+!p1@BHLHE40!1.03!679.35!BHLHE40;;chr18:77155922..77155939,+!p1@NFATC1!1.02!26.37!NFATC1;;chr17:38256799..38256815,-!p3@NR1D1!1.02!17.37!NR1D1;;chr17:46692457..46692484,-!p2@HOXB8!1.01!9.31!HOXB8;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.31!ALX1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.00!12.72!NFKBIZ;;chr20:50179368..50179392,-!p2@NFATC2!1.00!11.79!NFATC2;;chr17:46675420..46675465,-!p3@HOXB6!1.00!10.55!HOXB6;;chr19:48773337..48773339,+!p2@ZNF114!0.99!8.69!ZNF114;;chr17:46621937..46621966,-!p2@HOXB2!0.96!22.33!HOXB2;;chr10:64018918..64018936,+!p2@ZNF365!0.96!8.07!ZNF365;;chr13:73633131..73633149,+!p1@KLF5!0.95!88.10!KLF5;;chr17:35294075..35294102,+!p1@ENST00000559335!0.94!7.76!LHX1;;chr22:19748231..19748317,+!p1@TBX1!0.94!7.76!TBX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.93!12.72!TFAP2A;;chr14:75745523..75745537,+!p1@FOS!0.92!920.07!FOS;;chr11:61520075..61520136,+!p1@C11orf9!0.91!15.51!C11orf9;;chr17:46690839..46690884,-!p1@HOXB8!0.91!7.13!HOXB8;;chr7:63505799..63505904,+!p1@ZNF727!0.91!7.13!ZNF727;;chr14:35872453..35872485,-!p2@NFKBIA!0.90!17.68!NFKBIA;;chr6:1389789..1389821,+!p1@FOXF2!0.90!9.62!FOXF2;;chr8:49833978..49833996,-!p1@SNAI2!0.89!146.73!SNAI2;;chr1:212782094..212782109,+!p1@ATF3!0.88!187.99!ATF3;;chr8:72755987..72756002,-!p7@MSC!0.88!6.51!MSC;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.88!6.51!ZNF676;;chr7:19157248..19157268,-!p1@TWIST1!0.87!18.61!TWIST1;;chr6:10412392..10412409,-!p4@TFAP2A!0.86!7.13!TFAP2A;;chr18:45935720..45935772,-!p1@ZBTB7C!0.86!6.20!ZBTB7C;;chr5:174151553..174151610,+!p1@MSX2!0.85!10.55!MSX2;;chr8:49833948..49833973,-!p2@SNAI2!0.83!38.78!SNAI2;;chr3:169381420..169381535,-!p1@MECOM!0.83!6.82!MECOM;;chr12:66218255..66218304,+!p3@HMGA2!0.82!16.13!HMGA2;;chr3:5021191..5021202,+!p3@BHLHE40!0.82!15.82!BHLHE40;;chr21:38071430..38071456,+!p1@SIM2!0.82!5.58!SIM2;;chr4:4861385..4861398,+!p1@MSX1!0.81!17.37!MSX1;;chr1:158985493..158985535,+!p4@IFI16!0.81!8.69!IFI16;;chr13:41635029..41635044,-!p4@ELF1!0.80!11.79!ELF1;;chr13:100634031..100634045,+!p1@ZIC2!0.80!5.27!ZIC2;;chr17:46691732..46691766,-!p4@HOXB8!0.80!5.27!HOXB8;;chr17:46703528..46703549,-!p5@HOXB9!0.80!5.27!HOXB9;;chr2:238536207..238536290,+!p2@LRRFIP1!0.79!54.60!LRRFIP1;;chr8:72756267..72756296,-!p4@MSC!0.79!7.76!MSC;;chr5:131826457..131826514,-!p1@IRF1!0.78!217.14!IRF1;;chr12:66218598..66218645,+!p2@HMGA2!0.78!25.13!HMGA2;;chr19:52956798..52956843,+!p1@ZNF578!0.77!10.24!ZNF578;;chr8:72756667..72756736,-!p2@MSC!0.77!8.07!MSC;;chr14:35873947..35873965,-!p1@NFKBIA!0.75!326.03!NFKBIA;;chr17:46692318..46692362,-!p5@HOXB8!0.75!4.65!HOXB8;;chr1:212738742..212738755,+!p2@ATF3!0.75!4.65!ATF3;;chr1:8938709..8938720,-!p3@ENO1!0.74!240.41!ENO1;;chr17:46667594..46667619,-!p1@HOXB3!0.73!4.34!HOXB3;;chr17:46688310..46688323,-!p4@HOXB7!0.73!4.34!HOXB7;;chr13:100634130..100634143,+!p3@ZIC2!0.73!4.34!ZIC2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.73!4.34!LRRFIP1;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.40!FOXD1;;chr17:46622205..46622218,-!p3@HOXB2!0.72!4.96!HOXB2;;chr6:21597765..21597779,+!p2@SOX4!0.71!37.53!SOX4;;chr8:80679993..80680011,-!p1@HEY1!0.71!6.20!HEY1;;chr8:72756023..72756055,-!p6@MSC!0.71!5.27!MSC;;chr3:101568349..101568365,+!p1@NFKBIZ!0.70!238.24!NFKBIZ;;chr17:56065729..56065781,-!p2@VEZF1!0.70!19.54!VEZF1;;chr5:150284532..150284549,-!p1@ZNF300!0.70!9.00!ZNF300;;chr13:73636516..73636532,+!p3@KLF5!0.70!4.65!KLF5;;chr12:85674018..85674039,+!p3@ALX1!0.70!4.03!ALX1;;chr17:46692603..46692621,-!p6@HOXB8!0.70!4.03!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.70!4.03!NPAS1;;chr21:38071403..38071428,+!p2@SIM2!0.70!4.03!SIM2;;chr6:10415484..10415508,-!p3@TFAP2A!0.70!4.03!TFAP2A;;chr6:21593973..21593988,+!p1@SOX4!0.69!160.07!SOX4;;chr19:36391434..36391450,-!p1@NFKBID!0.69!8.38!NFKBID;;chr12:66218212..66218244,+!p5@HMGA2!0.69!5.89!HMGA2;;chr20:48807351..48807384,+!p1@CEBPB!0.68!452.59!CEBPB;;chr3:193853927..193853944,+!p1@HES1!0.68!142.69!HES1;;chr22:21771656..21771662,+!p1@HIC2!0.67!3.72!HIC2;;chr1:6479968..6479986,-!p1@HES2!0.67!3.72!HES2;;chr16:51185172..51185197,-!p1@SALL1!0.67!3.72!SALL1;;chr17:46675539..46675551,-!p7@HOXB6!0.6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+|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0002532,UBERON:0006603,UBERON:0005795,UBERON:0010316
 |fonse_cell_line=FF:0101120,FF:0101555
 |fonse_cell_line_closure=FF:0101120,FF:0101555
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%2520after%2520co-culture%2520with%2520SOC-57-02-G%252c%2520biol_rep1.CNhs13508.11843-124H7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%2520after%2520co-culture%2520with%2520SOC-57-02-G%252c%2520biol_rep1.CNhs13508.11843-124H7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%2520after%2520co-culture%2520with%2520SOC-57-02-G%252c%2520biol_rep1.CNhs13508.11843-124H7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%2520after%2520co-culture%2520with%2520SOC-57-02-G%252c%2520biol_rep1.CNhs13508.11843-124H7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/serous%2520adenocarcinoma%2520cell%2520line%253aSK-OV-3-R%2520after%2520co-culture%2520with%2520SOC-57-02-G%252c%2520biol_rep1.CNhs13508.11843-124H7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11843-124H7
 |is_a=EFO:0001746;;EFO:0002091;;FF:0000210;;FF:0000350;;FF:0103803
 |is_obsolete=
+|library_id=CNhs13508
+|library_id_phase_based=2:CNhs13508
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11843
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11843
 |name=serous adenocarcinoma cell line:SK-OV-3-R after co-culture with SOC-57-02-G, biol_rep1
 |namespace=
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13508,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 58: / Line 78: @@
 |rna_weight_ug=5.4803
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11843-124H7;search_select_hide=table117:FF:11843-124H7
 }}

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FF:11843-124H7: Difference between revisions

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Latest revision as of 18:23, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0