FF:11890-125D9: Difference between revisions

Latest revision as of 18:27, 4 June 2020

Name:	Hep-2 cells treated with Streptococci strain 5448, biol_rep1
Species:	Human (Homo sapiens)
Library ID:	CNhs13477
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	56
cell type	unclassifiable
cell line	Hep-2
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1a
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005183

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13477		CAGE		DRX007785		DRR008657

Accession ID Hg19

Library id		BAM		CTSS
CNhs13477		DRZ000082		DRZ001467

Accession ID Hg38

Library id		BAM		CTSS
CNhs13477		DRZ011432		DRZ012817

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0142
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0.849
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.463
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0866
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0.0454
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0169
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.198
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0894
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0126
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00115
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.124
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.724
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.457
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0481
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.742
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0454
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0.0227
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.494
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.521
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0.159
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0533
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13477

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0669
MA0003.1	MA0003.1	0.848
MA0004.1	MA0004.1	0.153
MA0006.1	MA0006.1	0.518
MA0007.1	MA0007.1	0.391
MA0009.1	MA0009.1	0.597
MA0014.1	MA0014.1	0.587
MA0017.1	MA0017.1	0.446
MA0018.2	MA0018.2	0.839
MA0019.1	MA0019.1	0.907
MA0024.1	MA0024.1	1.85755e-7
MA0025.1	MA0025.1	0.0671
MA0027.1	MA0027.1	0.922
MA0028.1	MA0028.1	1.83269e-6
MA0029.1	MA0029.1	0.483
MA0030.1	MA0030.1	0.686
MA0031.1	MA0031.1	0.1
MA0035.2	MA0035.2	0.698
MA0038.1	MA0038.1	0.889
MA0039.2	MA0039.2	0.0468
MA0040.1	MA0040.1	0.281
MA0041.1	MA0041.1	0.413
MA0042.1	MA0042.1	0.527
MA0043.1	MA0043.1	0.164
MA0046.1	MA0046.1	0.778
MA0047.2	MA0047.2	0.911
MA0048.1	MA0048.1	0.0248
MA0050.1	MA0050.1	0.131
MA0051.1	MA0051.1	0.712
MA0052.1	MA0052.1	0.00199
MA0055.1	MA0055.1	1.48636e-4
MA0057.1	MA0057.1	0.277
MA0058.1	MA0058.1	0.0754
MA0059.1	MA0059.1	0.00689
MA0060.1	MA0060.1	0.225
MA0061.1	MA0061.1	0.119
MA0062.2	MA0062.2	0.00389
MA0065.2	MA0065.2	0.0111
MA0066.1	MA0066.1	0.757
MA0067.1	MA0067.1	0.293
MA0068.1	MA0068.1	0.00272
MA0069.1	MA0069.1	0.275
MA0070.1	MA0070.1	0.583
MA0071.1	MA0071.1	0.0383
MA0072.1	MA0072.1	0.587
MA0073.1	MA0073.1	0.178
MA0074.1	MA0074.1	0.489
MA0076.1	MA0076.1	3.68082e-5
MA0077.1	MA0077.1	0.979
MA0078.1	MA0078.1	0.137
MA0079.2	MA0079.2	0.323
MA0080.2	MA0080.2	8.5286e-8
MA0081.1	MA0081.1	0.431
MA0083.1	MA0083.1	0.0146
MA0084.1	MA0084.1	0.538
MA0087.1	MA0087.1	0.422
MA0088.1	MA0088.1	0.0374
MA0090.1	MA0090.1	0.00683
MA0091.1	MA0091.1	0.509
MA0092.1	MA0092.1	0.796
MA0093.1	MA0093.1	0.105
MA0099.2	MA0099.2	0.0136
MA0100.1	MA0100.1	0.608
MA0101.1	MA0101.1	0.204
MA0102.2	MA0102.2	0.498
MA0103.1	MA0103.1	0.0217
MA0104.2	MA0104.2	7.7794e-4
MA0105.1	MA0105.1	0.804
MA0106.1	MA0106.1	0.58
MA0107.1	MA0107.1	0.0558
MA0108.2	MA0108.2	0.331
MA0111.1	MA0111.1	0.864
MA0112.2	MA0112.2	0.0228
MA0113.1	MA0113.1	0.71
MA0114.1	MA0114.1	0.0143
MA0115.1	MA0115.1	0.0249
MA0116.1	MA0116.1	0.32
MA0117.1	MA0117.1	0.973
MA0119.1	MA0119.1	0.616
MA0122.1	MA0122.1	0.937
MA0124.1	MA0124.1	0.7
MA0125.1	MA0125.1	0.483
MA0131.1	MA0131.1	0.207
MA0135.1	MA0135.1	0.49
MA0136.1	MA0136.1	6.11778e-4
MA0137.2	MA0137.2	0.0224
MA0138.2	MA0138.2	0.067
MA0139.1	MA0139.1	0.604
MA0140.1	MA0140.1	0.401
MA0141.1	MA0141.1	0.005
MA0142.1	MA0142.1	0.917
MA0143.1	MA0143.1	0.102
MA0144.1	MA0144.1	0.359
MA0145.1	MA0145.1	0.748
MA0146.1	MA0146.1	0.113
MA0147.1	MA0147.1	2.88815e-4
MA0148.1	MA0148.1	0.246
MA0149.1	MA0149.1	0.0745
MA0150.1	MA0150.1	0.386
MA0152.1	MA0152.1	0.464
MA0153.1	MA0153.1	0.0681
MA0154.1	MA0154.1	0.773
MA0155.1	MA0155.1	0.296
MA0156.1	MA0156.1	0.0859
MA0157.1	MA0157.1	0.0908
MA0159.1	MA0159.1	0.0749
MA0160.1	MA0160.1	0.0297
MA0162.1	MA0162.1	0.126
MA0163.1	MA0163.1	0.0227
MA0164.1	MA0164.1	0.334
MA0258.1	MA0258.1	0.62
MA0259.1	MA0259.1	0.027

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13477

Novel motif	Logo	P-value
1	1	0.0941
10	10	0.0621
100	100	0.0249
101	101	0.231
102	102	0.919
103	103	0.656
104	104	0.938
105	105	0.161
106	106	0.0495
107	107	0.267
108	108	0.822
109	109	8.08662e-4
11	11	0.801
110	110	0.21
111	111	0.82
112	112	0.451
113	113	0.00142
114	114	0.9
115	115	0.529
116	116	0.249
117	117	0.114
118	118	0.0904
119	119	0.61
12	12	0.747
120	120	0.0521
121	121	0.492
122	122	0.21
123	123	0.24
124	124	0.539
125	125	0.915
126	126	0.834
127	127	0.24
128	128	0.00103
129	129	0.281
13	13	6.82471e-5
130	130	0.673
131	131	0.442
132	132	0.398
133	133	0.305
134	134	0.988
135	135	0.0841
136	136	0.00316
137	137	0.281
138	138	0.843
139	139	0.0781
14	14	0.395
140	140	0.345
141	141	0.506
142	142	0.695
143	143	0.166
144	144	0.41
145	145	0.349
146	146	0.515
147	147	0.907
148	148	0.433
149	149	0.71
15	15	0.887
150	150	0.463
151	151	0.733
152	152	0.798
153	153	0.567
154	154	0.435
155	155	0.432
156	156	0.0411
157	157	0.12
158	158	0.142
159	159	0.199
16	16	0.784
160	160	0.387
161	161	0.507
162	162	0.765
163	163	0.273
164	164	0.00858
165	165	0.941
166	166	0.0329
167	167	0.176
168	168	0.347
169	169	0.144
17	17	0.991
18	18	0.156
19	19	0.974
2	2	0.557
20	20	0.0758
21	21	0.256
22	22	0.931
23	23	0.00385
24	24	0.687
25	25	0.365
26	26	0.632
27	27	0.927
28	28	0.858
29	29	0.0168
3	3	0.805
30	30	0.368
31	31	0.579
32	32	0.182
33	33	0.166
34	34	0.232
35	35	0.768
36	36	0.162
37	37	0.197
38	38	0.931
39	39	0.925
4	4	0.196
40	40	0.0172
41	41	0.0958
42	42	0.914
43	43	0.508
44	44	0.0383
45	45	0.179
46	46	0.785
47	47	0.352
48	48	0.44
49	49	0.208
5	5	0.187
50	50	0.855
51	51	0.641
52	52	0.368
53	53	0.138
54	54	0.51
55	55	0.0287
56	56	0.95
57	57	0.623
58	58	0.784
59	59	0.781
6	6	0.539
60	60	0.428
61	61	0.0413
62	62	0.829
63	63	0.492
64	64	0.669
65	65	0.449
66	66	0.748
67	67	0.636
68	68	0.678
69	69	0.843
7	7	0.0484
70	70	0.489
71	71	0.0235
72	72	0.803
73	73	0.214
74	74	0.11
75	75	0.096
76	76	0.177
77	77	0.521
78	78	0.169
79	79	0.894
8	8	0.0954
80	80	0.0333
81	81	0.31
82	82	0.196
83	83	0.544
84	84	0.559
85	85	0.0301
86	86	0.868
87	87	0.00473
88	88	0.751
89	89	0.753
9	9	0.528
90	90	0.0589
91	91	0.0196
92	92	0.0827
93	93	0.349
94	94	0.421
95	95	0.00104
96	96	0.46
97	97	0.742
98	98	0.991
99	99	0.359

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13477

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011133 human Hep-2 cells treated with Streptococci strain 5448 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000638 (Streptococcus strain 5448 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011133 (human Hep-2 cells treated with Streptococci strain 5448 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001737,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0000062,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0000072,UBERON:0003104,UBERON:0001048,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0000065,UBERON:0001004,UBERON:0007026,UBERON:0001041,UBERON:0001557,UBERON:0009142,UBERON:0008947,UBERON:0003258,UBERON:0006595,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00005183
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000255
+|accession_numbers=CAGE;DRX007785;DRR008657;DRZ000082;DRZ001467;DRZ011432;DRZ012817
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000632,FF:0104978,FF:0000638,FF:0100297,FF:0101120,FF:0011133
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.65!52.94!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.53!32.76!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.47!42.90!PITX1;;chr6:126240380..126240430,+!p2@NCOA7!1.45!69.60!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.44!43.24!TFAP2A;;chr2:238592039..238592054,+!p4@LRRFIP1!1.44!26.25!LRRFIP1;;chr6:1312325..1312340,+!p1@FOXQ1!1.39!37.83!FOXQ1;;chr6:126240442..126240459,+!p4@NCOA7!1.39!30.22!NCOA7;;chr5:134369879..134369898,-!p2@PITX1!1.34!20.85!PITX1;;chr1:201979743..201979762,+!p1@ELF3!1.29!18.64!ELF3;;chr6:126240463..126240489,+!p6@NCOA7!1.24!18.20!NCOA7;;chr5:170736243..170736279,+!p1@TLX3!1.23!15.99!TLX3;;chr22:19748231..19748317,+!p1@TBX1!1.18!14.01!TBX1;;chr6:126240356..126240379,+!p7@NCOA7!1.16!16.54!NCOA7;;chr12:54380036..54380091,+!p4@HOXC10!1.16!13.57!HOXC10;;chr20:6748325..6748352,+!p1@BMP2!1.13!18.09!BMP2;;chr1:201979703..201979721,+!p2@ELF3!1.12!12.13!ELF3;;chr12:54378923..54378966,+!p1@HOXC10!1.12!12.13!HOXC10;;chr6:1389789..1389821,+!p1@FOXF2!1.11!16.43!FOXF2;;chr17:46682321..46682362,-!p1@HOXB6!1.11!12.02!HOXB6;;chr9:100615499..100615519,+!p1@FOXE1!1.11!11.91!FOXE1;;chr12:54380404..54380433,+!p3@HOXC10!1.09!11.36!HOXC10;;chr17:46687959..46688007,-!p2@HOXB7!1.08!15.44!HOXB7;;chr1:44513995..44514031,+!p1@KLF17!1.07!10.81!KLF17;;chr7:101917447..101917479,+!p4@CUX1!1.06!10.48!CUX1;;chrX:131624056..131624069,-!p2@MBNL3!1.04!13.57!MBNL3;;chr18:55102598..55102623,+!p1@ONECUT2!1.04!10.04!ONECUT2;;chr6:10412576..10412599,-!p5@TFAP2A!1.00!8.93!TFAP2A;;chr18:55102628..55102646,+!p2@ONECUT2!0.98!8.49!ONECUT2;;chr11:34663913..34663945,+!p6@EHF!0.97!8.27!EHF;;chr7:27224842..27224872,-!p1@HOXA11!0.97!8.27!HOXA11;;chr3:69915385..69915438,+!p3@MITF!0.96!8.05!MITF;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.38!TFAP2A;;chr12:54332608..54332636,+!p1@HOXC13!0.92!7.39!HOXC13;;chr5:170736216..170736238,+!p2@TLX3!0.92!7.28!TLX3;;chr13:73633131..73633149,+!p1@KLF5!0.88!74.56!KLF5;;chr7:27239703..27239715,-!p1@HOXA13!0.86!6.29!HOXA13;;chr6:31126291..31126399,+!p1@TCF19!0.85!61.21!TCF19;;chr12:54379029..54379057,+!p2@HOXC10!0.85!6.07!HOXC10;;chr10:104155659..104155676,+!p4@NFKB2!0.84!7.61!NFKB2;;chr7:101917407..101917443,+!p3@CUX1!0.84!5.96!CUX1;;chr10:28034739..28034756,-!p1@MKX!0.84!5.85!MKX;;chrX:131623044..131623089,-!p1@MBNL3!0.82!24.60!MBNL3;;chr5:321810..321877,+!p1@AHRR!0.81!18.31!AHRR;;chr8:55370487..55370503,+!p1@SOX17!0.81!5.51!SOX17;;chr1:8934931..8934947,-!p4@ENO1!0.80!18.64!ENO1;;chr16:29818199..29818216,+!p11@MAZ!0.80!9.04!MAZ;;chr17:17726907..17726958,-!p2@SREBF1!0.79!34.85!SREBF1;;chr21:38071430..38071456,+!p1@SIM2!0.79!5.18!SIM2;;chr11:34664014..34664045,+!p4@EHF!0.78!5.07!EHF;;chr12:3068544..3068597,+!p1@TEAD4!0.77!31.99!TEAD4;;chr12:80084737..80084763,-!p3@PAWR!0.77!19.96!PAWR;;chr1:45805872..45805900,+!p2@TOE1!0.77!12.68!TOE1;;chr1:151804244..151804310,-!p1@RORC!0.77!4.85!RORC;;chr15:96875657..96875760,+!p14@NR2F2!0.76!8.16!NR2F2;;chr15:67418119..67418162,+!p5@SMAD3!0.76!5.40!SMAD3;;chr7:27224795..27224840,-!p2@HOXA11!0.75!4.63!HOXA11;;chr8:128748308..128748324,+!p2@MYC!0.74!138.64!MYC;;chr10:51572408..51572454,+!p3@NCOA4!0.74!29.12!NCOA4;;chr12:54332652..54332671,+!p2@HOXC13!0.74!4.52!HOXC13;;chr2:178129853..178129860,-!p14@NFE2L2!0.74!4.52!NFE2L2;;chr1:8938709..8938720,-!p3@ENO1!0.73!235.70!ENO1;;chr3:138665937..138665968,-!p1@FOXL2!0.73!4.41!FOXL2;;chr20:42295745..42295765,+!p1@MYBL2!0.72!77.76!MYBL2;;chr2:46524897..46524911,+!p2@EPAS1!0.72!12.90!EPAS1;;chr2:172967621..172967637,-!p1@DLX2!0.72!12.57!DLX2;;chr17:46688334..46688385,-!p1@HOXB7!0.72!6.51!HOXB7;;chr7:101917482..101917507,+!p6@CUX1!0.72!4.30!CUX1;;chr14:37131058..37131139,+!p1@PAX9!0.72!4.30!PAX9;;chr2:45236540..45236577,-!p1@SIX2!0.71!4.08!SIX2;;chr12:2986275..2986363,-!p1@FOXM1!0.70!45.22!FOXM1;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.91!MYBL2;;chr12:72056800..72056834,+!p1@THAP2!0.70!5.62!THAP2;;chr6:10415263..10415274,-!p8@TFAP2A!0.70!3.97!TFAP2A;;chrX:131623026..131623039,-!p5@MBNL3!0.70!3.97!MBNL3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.69!3.86!SEBOX;;chr6:126240490..126240501,+!p11@NCOA7!0.69!3.86!NCOA7;;chr20:30193083..30193098,+!p1@ID1!0.68!354.71!ID1;;chr6:1389989..1390019,+!p2@FOXF2!0.68!3.75!FOXF2;;chr12:54379136..54379150,+!p4@HOXC5!0.68!3.75!HOXC5;;chr22:19746969..19746987,+!p2@TBX1!0.68!3.75!TBX1;;chr1:23885981..23886002,-!p1@ID3!0.67!753.31!ID3;;chr17:7492684..7492778,-!p2@SOX15!0.67!8.60!SOX15;;chr20:62680984..62680999,-!p1@SOX18!0.67!5.07!SOX18;;chr3:69915369..69915381,+!p4@MITF!0.67!3.64!MITF;;chr17:48072574..48072597,-!p1@DLX3!0.67!3.64!DLX3;;chr12:52445218..52445237,+!p1@NR4A1!0.66!51.95!NR4A1;;chr16:29818160..29818188,+!p6@MAZ!0.66!18.97!MAZ;;chr6:10419824..10419840,-!p9@TFAP2A!0.66!3.53!TFAP2A;;chr13:100623375..100623425,-!p1@ZIC5!0.66!3.53!ZIC5;;chr2:178128149..178128198,-!p2@NFE2L2!0.65!21.29!NFE2L2;;chr17:41277372..41277418,-!p1@BRCA1!0.65!14.34!BRCA1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.65!3.42!SEBOX;;chr12:54379477..543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+|ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0101120
 |fonse_cell_line_closure=FF:0101120
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000638,FF:0011133,FF:11890-125D9
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep1.CNhs13477.11890-125D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep1.CNhs13477.11890-125D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep1.CNhs13477.11890-125D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep1.CNhs13477.11890-125D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%25205448%252c%2520biol_rep1.CNhs13477.11890-125D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11890-125D9
-|is_a=EFO:0002091;;FF:0000210;;FF:0011133
+|is_a=EFO:0002091;;FF:0011133
+|is_obsolete=
+|library_id=CNhs13477
+|library_id_phase_based=2:CNhs13477
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11890
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11890
 |name=Hep-2 cells treated with Streptococci strain 5448, biol_rep1
 |namespace=
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13477,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=10
 |sample_age=56
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=Hep-2
@@ Line 77: / Line 99: @@
 |sample_tissue=
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11890-125D9;search_select_hide=table117:FF:11890-125D9
 }}

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FF:11890-125D9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:27, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0