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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005170
|DRA_sample_Accession=CAGE@SAMD00005170
|accession_numbers=CAGE;DRX007788;DRR008660;DRZ000085;DRZ001470
|accession_numbers=CAGE;DRX007788;DRR008660;DRZ000085;DRZ001470;DRZ011435;DRZ012820
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!1.51!31.42!ELF3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.48!29.12!LRRFIP1;;chr6:10415484..10415508,-!p3@TFAP2A!1.44!26.70!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.37!37.08!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.35!32.76!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.34!20.90!ELF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.33!24.94!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.31!49.89!NCOA7;;chr6:126240442..126240459,+!p4@NCOA7!1.31!24.40!NCOA7;;chr5:134369879..134369898,-!p2@PITX1!1.31!19.55!PITX1;;chr5:170736243..170736279,+!p1@TLX3!1.18!14.16!TLX3;;chr12:52445218..52445237,+!p1@NR4A1!1.17!174.07!NR4A1;;chr6:1312325..1312340,+!p1@FOXQ1!1.17!22.25!FOXQ1;;chr7:101917447..101917479,+!p4@CUX1!1.07!10.79!CUX1;;chr1:44513995..44514031,+!p1@KLF17!1.07!10.65!KLF17;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.24!BMP2;;chr6:126240356..126240379,+!p7@NCOA7!1.05!12.67!NCOA7;;chr6:126240463..126240489,+!p6@NCOA7!1.05!11.46!NCOA7;;chr12:54380036..54380091,+!p4@HOXC10!1.01!9.17!HOXC10;;chrX:131624056..131624069,-!p2@MBNL3!1.00!12.40!MBNL3;;chr18:55102598..55102623,+!p1@ONECUT2!1.00!9.03!ONECUT2;;chr22:19748231..19748317,+!p1@TBX1!0.99!8.76!TBX1;;chr12:54380404..54380433,+!p3@HOXC10!0.96!8.22!HOXC10;;chr17:46687959..46688007,-!p2@HOXB7!0.95!11.19!HOXB7;;chr12:54378923..54378966,+!p1@HOXC10!0.95!7.96!HOXC10;;chr17:46682321..46682362,-!p1@HOXB6!0.93!7.55!HOXB6;;chr3:69915385..69915438,+!p3@MITF!0.93!7.42!MITF;;chr18:55102628..55102646,+!p2@ONECUT2!0.92!7.28!ONECUT2;;chr6:10412576..10412599,-!p5@TFAP2A!0.90!6.88!TFAP2A;;chr7:101917482..101917507,+!p6@CUX1!0.89!6.74!CUX1;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.74!FOXE1;;chr6:1389789..1389821,+!p1@FOXF2!0.88!9.17!FOXF2;;chr5:321810..321877,+!p1@AHRR!0.87!21.44!AHRR;;chr7:101917407..101917443,+!p3@CUX1!0.86!6.20!CUX1;;chr17:7492684..7492778,-!p2@SOX15!0.84!13.21!SOX15;;chr17:17726907..17726958,-!p2@SREBF1!0.83!37.75!SREBF1;;chrX:131623044..131623089,-!p1@MBNL3!0.82!24.67!MBNL3;;chr10:51572408..51572454,+!p3@NCOA4!0.81!34.38!NCOA4;;chr9:102584262..102584276,+!p1@NR4A3!0.81!12.94!NR4A3;;chr11:34663913..34663945,+!p6@EHF!0.81!5.39!EHF;;chr5:170736216..170736238,+!p2@TLX3!0.80!5.26!TLX3;;chr1:151804244..151804310,-!p1@RORC!0.79!5.12!RORC;;chr1:8938709..8938720,-!p3@ENO1!0.78!267.24!ENO1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.78!4.99!SEBOX;;chr6:31126291..31126399,+!p1@TCF19!0.77!51.37!TCF19;;chr9:102584159..102584174,+!p2@NR4A3!0.76!9.03!NR4A3;;chr7:27224842..27224872,-!p1@HOXA11!0.76!4.72!HOXA11;;chr17:8027418..8027432,-!p1@HES7!0.76!4.72!HES7;;chr6:10412392..10412409,-!p4@TFAP2A!0.75!5.39!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.74!53.66!KLF5;;chr12:2986275..2986363,-!p1@FOXM1!0.74!49.89!FOXM1;;chr12:72056800..72056834,+!p1@THAP2!0.74!6.34!THAP2;;chr11:34664014..34664045,+!p4@EHF!0.73!4.31!EHF;;chr17:46688334..46688385,-!p1@HOXB7!0.72!6.47!HOXB7;;chrX:107018969..107019024,-!p6@TSC22D3!0.72!6.07!TSC22D3;;chr21:38071430..38071456,+!p1@SIM2!0.71!4.18!SIM2;;chr2:157189180..157189290,-!p1@NR4A2!0.70!23.33!NR4A2;;chr1:935398..935465,-!p2@HES4!0.70!9.03!HES4;;chr6:126240490..126240501,+!p11@NCOA7!0.70!4.04!NCOA7;;chr16:29818199..29818216,+!p11@MAZ!0.69!6.88!MAZ;;chr10:104155659..104155676,+!p4@NFKB2!0.69!4.99!NFKB2;;chrX:107019163..107019179,-!p7@TSC22D3!0.69!4.58!TSC22D3;;chr20:42295745..42295765,+!p1@MYBL2!0.68!70.79!MYBL2;;chr12:3068544..3068597,+!p1@TEAD4!0.68!25.75!TEAD4;;chr12:54393880..54393962,+!p1@HOXC9!0.68!3.78!HOXC9;;chr2:45236540..45236577,-!p1@SIX2!0.67!3.64!SIX2;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.27!MYBL2;;chr17:41277372..41277418,-!p1@BRCA1!0.65!14.43!BRCA1;;chr1:45805872..45805900,+!p2@TOE1!0.65!9.44!TOE1;;chr3:69915369..69915381,+!p4@MITF!0.65!3.51!MITF;;chr12:54379029..54379057,+!p2@HOXC10!0.65!3.51!HOXC10;;chr8:145669791..145669834,-!p1@TONSL!0.64!11.06!TONSL;;chr15:67418119..67418162,+!p5@SMAD3!0.64!3.78!SMAD3;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.37!TFAP2A;;chr12:54332608..54332636,+!p1@HOXC13!0.64!3.37!HOXC13;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.96!PHB2;;chr1:180199393..180199426,+!p1@LHX4!0.63!3.24!LHX4;;chr3:12330560..12330579,+!p1@PPARG!0.61!3.64!PPARG;;chr17:46806067..46806097,-!p1@HOXB13!0.61!3.10!HOXB13;;chr15:90294062..90294079,-!p2@MESP1!0.60!2.97!MESP1;;chr10:28034739..28034756,-!p1@MKX!0.60!2.97!MKX;;chr21:38071403..38071428,+!p2@SIM2!0.60!2.97!SIM2;;chr3:141087393..141087426,+!p3@ZBTB38!0.58!13.21!ZBTB38;;chr12:80084737..80084763,-!p3@PAWR!0.58!12.54!PAWR;;chr12:72056773..72056796,+!p3@THAP2!0.58!3.91!THAP2;;chrX:131622958..131622978,-!p3@MBNL3!0.58!3.78!MBNL3;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.83!HOXA10;;chr17:46687935..46687950,-!p3@HOXB7!0.58!2.83!HOXB7;;chr17:46806098..46806118,-!p3@HOXB13!0.58!2.83!HOXB13;;chr11:3400340..3400422,-!p1@ZNF195!0.57!52.99!ZNF195;;chrX:70503529..70503549,+!p2@NONO!0.57!17.66!NONO;;chr22:42229210..42229229,+!p3@SREBF2!0.57!7.42!SREBF2;;chr1:247171316..247171336,-!p3@ZNF695!0.57!4.45!ZNF695;;chr14:37131058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Line 41: Line 41:
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000639,FF:0011134,FF:11894-125E4
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000639,FF:0011134,FF:11894-125E4
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Line 65: Line 75:
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|sample_age=56
Line 90: Line 100:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.96146599585;HES1:1.84384225587;FOXQ1:1.66176322348;E2F1..5:1.55200980964;ESRRA:1.53499155208;NR5A1,2:1.47317969871;FOXM1:1.33248571484;PPARG:1.28903526227;ELK1,4_GABP{A,B1}:1.14985498036;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.12141516455;YY1:0.966405704251;bHLH_family:0.90525608562;HIF1A:0.793611477784;NR6A1:0.731328064981;ZNF143:0.723984212349;NRF1:0.694462422964;NKX3-1:0.687817888892;HOX{A6,A7,B6,B7}:0.671680050668;PAX1,9:0.608212437306;NFY{A,B,C}:0.607625683924;ARID5B:0.605722042048;MYB:0.603798841982;HNF4A_NR2F1,2:0.603641451959;FOXD3:0.572239791365;EP300:0.570254141163;NKX3-2:0.566087567053;NFE2L1:0.517319889938;ZEB1:0.503380773948;FOXN1:0.501251400928;IKZF1:0.486099672952;SNAI1..3:0.480565199065;PAX8:0.442555167171;PAX5:0.419781480783;TEAD1:0.413124261386;TBX4,5:0.394545179742;ZBTB16:0.379855476449;IKZF2:0.348487852382;IRF7:0.334383380947;UFEwm:0.330735540867;GCM1,2:0.310746586525;CREB1:0.303561164357;MYOD1:0.288542164763;GFI1:0.287366834182;HOXA9_MEIS1:0.283194995053;POU3F1..4:0.27722421711;TP53:0.271931984563;POU1F1:0.254818363261;ZNF148:0.231439204032;PAX2:0.229016203645;GTF2A1,2:0.168445938065;FOX{F1,F2,J1}:0.161411556105;ALX4:0.141166932364;HOX{A5,B5}:0.135624093949;ATF5_CREB3:0.129572368824;RXR{A,B,G}:0.129156400885;HLF:0.117531451332;VSX1,2:0.102023649756;MYBL2:0.0878024435129;OCT4_SOX2{dimer}:0.082264312568;BACH2:0.0732428150258;HAND1,2:0.0652451279799;NFE2:0.0566242632324;NFE2L2:0.0515076757951;CDC5L:0.046026053031;RFX2..5_RFXANK_RFXAP:0.043710975854;LHX3,4:0.043459084862;TFDP1:0.0238898604659;PITX1..3:0.0144212979736;HSF1,2:0.000151200844005;TEF:-0.0125635194609;RORA:-0.0147838680369;GFI1B:-0.0166888647734;EN1,2:-0.022678903936;FOS_FOS{B,L1}_JUN{B,D}:-0.0353905763576;GLI1..3:-0.0429768651324;TBP:-0.0472501338611;HNF1A:-0.0515870385566;CDX1,2,4:-0.0559988469277;ZNF423:-0.0720903139421;LEF1_TCF7_TCF7L1,2:-0.0738189120308;ZNF384:-0.08064408537;MEF2{A,B,C,D}:-0.0816029923765;MTF1:-0.0937159680725;ONECUT1,2:-0.0946682462415;CUX2:-0.102133402107;ATF6:-0.103820695261;FOXP3:-0.105594818453;ESR1:-0.11252573196;SOX{8,9,10}:-0.113077041903;PRRX1,2:-0.122054486967;PAX4:-0.1701605415;NR1H4:-0.173833645188;ELF1,2,4:-0.175235391623;ZBTB6:-0.180563314551;SREBF1,2:-0.189970770244;HOX{A4,D4}:-0.19267373803;ALX1:-0.196152007748;STAT2,4,6:-0.196764024916;LMO2:-0.202857028532;NR3C1:-0.203928290053;NANOG:-0.206636546773;PDX1:-0.216783533633;PAX3,7:-0.221433109988;NFKB1_REL_RELA:-0.234176629356;BREu{core}:-0.241592240157;NKX2-2,8:-0.242129465505;CEBPA,B_DDIT3:-0.251954391005;GZF1:-0.252029271381;FOXL1:-0.252485312778;NKX6-1,2:-0.263143030021;TLX1..3_NFIC{dimer}:-0.268584696106;ATF4:-0.282537035876;FOSL2:-0.305401793647;PBX1:-0.311066535075;STAT5{A,B}:-0.31891577695;AHR_ARNT_ARNT2:-0.323460805926;MAFB:-0.332962477559;AIRE:-0.340016456215;JUN:-0.351017291324;IRF1,2:-0.366689393621;EBF1:-0.38429523301;KLF4:-0.386394764688;NKX2-1,4:-0.426565931132;RBPJ:-0.427912498759;HBP1_HMGB_SSRP1_UBTF:-0.434032933059;PAX6:-0.436829339293;HIC1:-0.443988275727;DBP:-0.44806147477;NFIL3:-0.457597120791;SPIB:-0.457616931664;TFCP2:-0.485137409159;HMGA1,2:-0.49035219223;FOX{I1,J2}:-0.49374604123;ADNP_IRX_SIX_ZHX:-0.495389824302;GTF2I:-0.49780035724;RFX1:-0.498099188569;GATA6:-0.522199475337;BPTF:-0.523671672949;ZFP161:-0.535013572383;FOXP1:-0.539884784904;POU2F1..3:-0.542534988271;EVI1:-0.551248337649;T:-0.557882473877;SRF:-0.558543733757;CRX:-0.564656077691;SPI1:-0.617237395864;RXRA_VDR{dimer}:-0.648424230498;TFAP2B:-0.671565266861;SP1:-0.68487934896;SOX5:-0.694825350379;TFAP2{A,C}:-0.698445384393;AR:-0.700779746523;RUNX1..3:-0.704022237358;SOX17:-0.704244634538;FOXA2:-0.711704665724;TOPORS:-0.722917982193;NFATC1..3:-0.746021275997;TFAP4:-0.760813703872;ETS1,2:-0.768828172319;MED-1{core}:-0.76937811795;EGR1..3:-0.820048342089;NKX2-3_NKX2-5:-0.822164366439;XCPE1{core}:-0.82301509056;GATA4:-0.834813646418;REST:-0.851408937131;FOX{D1,D2}:-0.853476936002;DMAP1_NCOR{1,2}_SMARC:-0.888532277693;NHLH1,2:-0.892075983351;ZNF238:-0.92512313282;TAL1_TCF{3,4,12}:-0.930767038934;ATF2:-0.949615790923;POU6F1:-0.949922169675;SOX2:-0.95261668456;ZIC1..3:-0.964360236676;FOXO1,3,4:-0.973024181432;XBP1:-0.989318111656;POU5F1:-1.01350395746;MAZ:-1.03403136927;RREB1:-1.06610930211;MYFfamily:-1.10068880745;MTE{core}:-1.13926383654;PRDM1:-1.19161956402;MZF1:-1.26449697154;NFIX:-1.27399556276;PATZ1:-1.29202580971;SMAD1..7,9:-1.30411342839;TGIF1:-1.317275746;STAT1,3:-1.33149751431;TLX2:-1.39654741363;NANOG{mouse}:-1.48372951898;HMX1:-1.49442868737;SPZ1:-1.92865538494
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.96146599585;HES1:1.84384225587;FOXQ1:1.66176322348;E2F1..5:1.55200980964;ESRRA:1.53499155208;NR5A1,2:1.47317969871;FOXM1:1.33248571484;PPARG:1.28903526227;ELK1,4_GABP{A,B1}:1.14985498036;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.12141516455;YY1:0.966405704251;bHLH_family:0.90525608562;HIF1A:0.793611477784;NR6A1:0.731328064981;ZNF143:0.723984212349;NRF1:0.694462422964;NKX3-1:0.687817888892;HOX{A6,A7,B6,B7}:0.671680050668;PAX1,9:0.608212437306;NFY{A,B,C}:0.607625683924;ARID5B:0.605722042048;MYB:0.603798841982;HNF4A_NR2F1,2:0.603641451959;FOXD3:0.572239791365;EP300:0.570254141163;NKX3-2:0.566087567053;NFE2L1:0.517319889938;ZEB1:0.503380773948;FOXN1:0.501251400928;IKZF1:0.486099672952;SNAI1..3:0.480565199065;PAX8:0.442555167171;PAX5:0.419781480783;TEAD1:0.413124261386;TBX4,5:0.394545179742;ZBTB16:0.379855476449;IKZF2:0.348487852382;IRF7:0.334383380947;UFEwm:0.330735540867;GCM1,2:0.310746586525;CREB1:0.303561164357;MYOD1:0.288542164763;GFI1:0.287366834182;HOXA9_MEIS1:0.283194995053;POU3F1..4:0.27722421711;TP53:0.271931984563;POU1F1:0.254818363261;ZNF148:0.231439204032;PAX2:0.229016203645;GTF2A1,2:0.168445938065;FOX{F1,F2,J1}:0.161411556105;ALX4:0.141166932364;HOX{A5,B5}:0.135624093949;ATF5_CREB3:0.129572368824;RXR{A,B,G}:0.129156400885;HLF:0.117531451332;VSX1,2:0.102023649756;MYBL2:0.0878024435129;OCT4_SOX2{dimer}:0.082264312568;BACH2:0.0732428150258;HAND1,2:0.0652451279799;NFE2:0.0566242632324;NFE2L2:0.0515076757951;CDC5L:0.046026053031;RFX2..5_RFXANK_RFXAP:0.043710975854;LHX3,4:0.043459084862;TFDP1:0.0238898604659;PITX1..3:0.0144212979736;HSF1,2:0.000151200844005;TEF:-0.0125635194609;RORA:-0.0147838680369;GFI1B:-0.0166888647734;EN1,2:-0.022678903936;FOS_FOS{B,L1}_JUN{B,D}:-0.0353905763576;GLI1..3:-0.0429768651324;TBP:-0.0472501338611;HNF1A:-0.0515870385566;CDX1,2,4:-0.0559988469277;ZNF423:-0.0720903139421;LEF1_TCF7_TCF7L1,2:-0.0738189120308;ZNF384:-0.08064408537;MEF2{A,B,C,D}:-0.0816029923765;MTF1:-0.0937159680725;ONECUT1,2:-0.0946682462415;CUX2:-0.102133402107;ATF6:-0.103820695261;FOXP3:-0.105594818453;ESR1:-0.11252573196;SOX{8,9,10}:-0.113077041903;PRRX1,2:-0.122054486967;PAX4:-0.1701605415;NR1H4:-0.173833645188;ELF1,2,4:-0.175235391623;ZBTB6:-0.180563314551;SREBF1,2:-0.189970770244;HOX{A4,D4}:-0.19267373803;ALX1:-0.196152007748;STAT2,4,6:-0.196764024916;LMO2:-0.202857028532;NR3C1:-0.203928290053;NANOG:-0.206636546773;PDX1:-0.216783533633;PAX3,7:-0.221433109988;NFKB1_REL_RELA:-0.234176629356;BREu{core}:-0.241592240157;NKX2-2,8:-0.242129465505;CEBPA,B_DDIT3:-0.251954391005;GZF1:-0.252029271381;FOXL1:-0.252485312778;NKX6-1,2:-0.263143030021;TLX1..3_NFIC{dimer}:-0.268584696106;ATF4:-0.282537035876;FOSL2:-0.305401793647;PBX1:-0.311066535075;STAT5{A,B}:-0.31891577695;AHR_ARNT_ARNT2:-0.323460805926;MAFB:-0.332962477559;AIRE:-0.340016456215;JUN:-0.351017291324;IRF1,2:-0.366689393621;EBF1:-0.38429523301;KLF4:-0.386394764688;NKX2-1,4:-0.426565931132;RBPJ:-0.427912498759;HBP1_HMGB_SSRP1_UBTF:-0.434032933059;PAX6:-0.436829339293;HIC1:-0.443988275727;DBP:-0.44806147477;NFIL3:-0.457597120791;SPIB:-0.457616931664;TFCP2:-0.485137409159;HMGA1,2:-0.49035219223;FOX{I1,J2}:-0.49374604123;ADNP_IRX_SIX_ZHX:-0.495389824302;GTF2I:-0.49780035724;RFX1:-0.498099188569;GATA6:-0.522199475337;BPTF:-0.523671672949;ZFP161:-0.535013572383;FOXP1:-0.539884784904;POU2F1..3:-0.542534988271;EVI1:-0.551248337649;T:-0.557882473877;SRF:-0.558543733757;CRX:-0.564656077691;SPI1:-0.617237395864;RXRA_VDR{dimer}:-0.648424230498;TFAP2B:-0.671565266861;SP1:-0.68487934896;SOX5:-0.694825350379;TFAP2{A,C}:-0.698445384393;AR:-0.700779746523;RUNX1..3:-0.704022237358;SOX17:-0.704244634538;FOXA2:-0.711704665724;TOPORS:-0.722917982193;NFATC1..3:-0.746021275997;TFAP4:-0.760813703872;ETS1,2:-0.768828172319;MED-1{core}:-0.76937811795;EGR1..3:-0.820048342089;NKX2-3_NKX2-5:-0.822164366439;XCPE1{core}:-0.82301509056;GATA4:-0.834813646418;REST:-0.851408937131;FOX{D1,D2}:-0.853476936002;DMAP1_NCOR{1,2}_SMARC:-0.888532277693;NHLH1,2:-0.892075983351;ZNF238:-0.92512313282;TAL1_TCF{3,4,12}:-0.930767038934;ATF2:-0.949615790923;POU6F1:-0.949922169675;SOX2:-0.95261668456;ZIC1..3:-0.964360236676;FOXO1,3,4:-0.973024181432;XBP1:-0.989318111656;POU5F1:-1.01350395746;MAZ:-1.03403136927;RREB1:-1.06610930211;MYFfamily:-1.10068880745;MTE{core}:-1.13926383654;PRDM1:-1.19161956402;MZF1:-1.26449697154;NFIX:-1.27399556276;PATZ1:-1.29202580971;SMAD1..7,9:-1.30411342839;TGIF1:-1.317275746;STAT1,3:-1.33149751431;TLX2:-1.39654741363;NANOG{mouse}:-1.48372951898;HMX1:-1.49442868737;SPZ1:-1.92865538494
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11894-125E4;search_select_hide=table117:FF:11894-125E4
}}
}}

Latest revision as of 18:27, 4 June 2020

Name:Hep-2 cells treated with Streptococci strain JRS4, biol_rep1
Species:Human (Homo sapiens)
Library ID:CNhs13478
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age56
cell typeunclassifiable
cell lineHep-2
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2a
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005170
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13478 CAGE DRX007788 DRR008660
Accession ID Hg19

Library idBAMCTSS
CNhs13478 DRZ000085 DRZ001470
Accession ID Hg38

Library idBAMCTSS
CNhs13478 DRZ011435 DRZ012820
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0218
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0.787
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.452
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0424
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0.0549
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0229
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.218
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0085
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0735
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0697
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.104
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.777
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.28
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0212
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.717
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0549
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-2.062684e-4
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.555
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.526
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0.187
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0451
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13478

Jaspar motifP-value
MA0002.20.222
MA0003.10.71
MA0004.10.0752
MA0006.10.636
MA0007.10.447
MA0009.10.396
MA0014.10.562
MA0017.10.266
MA0018.20.54
MA0019.10.684
MA0024.11.16985e-7
MA0025.10.0767
MA0027.10.704
MA0028.11.12474e-5
MA0029.10.308
MA0030.10.256
MA0031.10.17
MA0035.20.928
MA0038.10.74
MA0039.20.0336
MA0040.10.426
MA0041.10.441
MA0042.10.624
MA0043.10.251
MA0046.10.96
MA0047.20.936
MA0048.10.0366
MA0050.10.08
MA0051.10.786
MA0052.10.0287
MA0055.13.53118e-5
MA0057.10.233
MA0058.10.0245
MA0059.10.00597
MA0060.10.241
MA0061.10.446
MA0062.20.00839
MA0065.20.00749
MA0066.10.468
MA0067.10.6
MA0068.10.00175
MA0069.10.234
MA0070.10.726
MA0071.10.033
MA0072.10.613
MA0073.10.288
MA0074.10.393
MA0076.11.05532e-4
MA0077.10.942
MA0078.10.209
MA0079.20.343
MA0080.21.44105e-7
MA0081.10.376
MA0083.10.0281
MA0084.10.612
MA0087.10.368
MA0088.10.0457
MA0090.10.00308
MA0091.10.6
MA0092.10.616
MA0093.10.0521
MA0099.20.64
MA0100.10.53
MA0101.10.508
MA0102.20.656
MA0103.10.0132
MA0104.20.00151
MA0105.10.536
MA0106.10.511
MA0107.10.238
MA0108.20.373
MA0111.10.564
MA0112.20.00358
MA0113.10.73
MA0114.10.00512
MA0115.10.0925
MA0116.10.136
MA0117.10.793
MA0119.10.69
MA0122.10.988
MA0124.10.783
MA0125.10.337
MA0131.10.599
MA0135.10.984
MA0136.18.15887e-4
MA0137.20.04
MA0138.20.0866
MA0139.10.459
MA0140.10.663
MA0141.18.93392e-4
MA0142.10.867
MA0143.10.121
MA0144.10.499
MA0145.10.74
MA0146.10.108
MA0147.14.85518e-4
MA0148.10.232
MA0149.10.0427
MA0150.10.732
MA0152.10.646
MA0153.10.112
MA0154.10.972
MA0155.10.461
MA0156.10.116
MA0157.10.259
MA0159.10.0448
MA0160.10.0047
MA0162.10.0799
MA0163.10.00628
MA0164.10.402
MA0258.10.351
MA0259.10.0396



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13478

Novel motifP-value
10.0599
100.0498
1000.0156
1010.155
1020.74
1030.795
1040.923
1050.36
1060.126
1070.23
1080.728
1096.53345e-4
110.588
1100.189
1110.765
1120.659
1130.00327
1140.416
1150.804
1160.138
1170.0803
1180.0654
1190.307
120.832
1200.0608
1210.397
1220.187
1230.287
1240.605
1250.727
1260.53
1270.2
1280.00125
1290.548
135.28612e-5
1300.821
1310.433
1320.605
1330.233
1340.902
1350.0423
1360.00834
1370.317
1380.512
1390.144
140.654
1400.506
1410.279
1420.853
1430.346
1440.39
1450.369
1460.742
1470.567
1480.331
1490.4
150.584
1500.683
1510.665
1520.993
1530.704
1540.411
1550.351
1560.0874
1570.119
1580.19
1590.216
160.484
1600.255
1610.568
1620.623
1630.295
1640.0122
1650.619
1660.0667
1670.208
1680.434
1690.108
170.707
180.267
190.933
20.522
200.0562
210.123
220.855
230.00942
240.513
250.273
260.592
270.687
280.888
290.00484
30.965
300.291
310.639
320.31
330.132
340.235
350.954
360.0533
370.168
380.772
390.919
40.235
400.00381
410.161
420.802
430.688
440.0348
450.241
460.985
470.262
480.292
490.348
50.304
500.829
510.741
520.378
530.161
540.701
550.0387
560.907
570.431
580.99
590.788
60.581
600.671
610.0303
620.623
630.417
640.504
650.606
660.783
670.548
680.541
690.903
70.0174
700.642
710.0147
720.995
730.232
740.134
750.0615
760.126
770.361
780.0983
790.903
80.0566
800.0608
810.259
820.366
830.38
840.718
850.0314
860.977
870.0025
880.826
890.744
90.586
900.0349
910.0134
920.3
930.353
940.548
950.00316
960.535
970.785
980.733
990.398



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13478


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000639 (Streptococcus strain JRS4 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011134 (human Hep-2 cells treated with Streptococci strain JRS4 sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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