FF:11917-125G9: Difference between revisions

Latest revision as of 18:29, 4 June 2020

Name:	CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13814
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	T cell
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	61-62
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005705

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13814		CAGE		DRX008189		DRR009061

Accession ID Hg19

Library id		BAM		CTSS
CNhs13814		DRZ000486		DRZ001871

Accession ID Hg38

Library id		BAM		CTSS
CNhs13814		DRZ011836		DRZ013221

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.106
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0837
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.285
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.106
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.106
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.106
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0874
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.281
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.123
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.734
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.142
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.137
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.106
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.151
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.106
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.756
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.876
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.603
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.351
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.377
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.5
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.377
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.106
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.323
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.246
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.191
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.974
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.867
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13814

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.95159e-6
MA0003.1	MA0003.1	0.903
MA0004.1	MA0004.1	0.862
MA0006.1	MA0006.1	0.447
MA0007.1	MA0007.1	0.874
MA0009.1	MA0009.1	0.541
MA0014.1	MA0014.1	0.687
MA0017.1	MA0017.1	0.335
MA0018.2	MA0018.2	0.596
MA0019.1	MA0019.1	0.18
MA0024.1	MA0024.1	0.0512
MA0025.1	MA0025.1	0.129
MA0027.1	MA0027.1	0.468
MA0028.1	MA0028.1	1.49964e-4
MA0029.1	MA0029.1	0.562
MA0030.1	MA0030.1	0.274
MA0031.1	MA0031.1	0.765
MA0035.2	MA0035.2	0.21
MA0038.1	MA0038.1	0.063
MA0039.2	MA0039.2	0.603
MA0040.1	MA0040.1	0.236
MA0041.1	MA0041.1	0.197
MA0042.1	MA0042.1	0.437
MA0043.1	MA0043.1	0.107
MA0046.1	MA0046.1	0.0454
MA0047.2	MA0047.2	0.933
MA0048.1	MA0048.1	0.675
MA0050.1	MA0050.1	3.31302e-6
MA0051.1	MA0051.1	0.0342
MA0052.1	MA0052.1	0.0124
MA0055.1	MA0055.1	0.518
MA0057.1	MA0057.1	0.855
MA0058.1	MA0058.1	0.964
MA0059.1	MA0059.1	0.282
MA0060.1	MA0060.1	0.987
MA0061.1	MA0061.1	0.0583
MA0062.2	MA0062.2	8.86034e-12
MA0065.2	MA0065.2	0.0432
MA0066.1	MA0066.1	0.488
MA0067.1	MA0067.1	0.885
MA0068.1	MA0068.1	0.916
MA0069.1	MA0069.1	0.856
MA0070.1	MA0070.1	0.509
MA0071.1	MA0071.1	0.592
MA0072.1	MA0072.1	0.928
MA0073.1	MA0073.1	0.773
MA0074.1	MA0074.1	0.777
MA0076.1	MA0076.1	6.07993e-6
MA0077.1	MA0077.1	0.0501
MA0078.1	MA0078.1	0.737
MA0079.2	MA0079.2	0.393
MA0080.2	MA0080.2	1.20144e-10
MA0081.1	MA0081.1	0.0484
MA0083.1	MA0083.1	0.041
MA0084.1	MA0084.1	0.667
MA0087.1	MA0087.1	0.369
MA0088.1	MA0088.1	0.0633
MA0090.1	MA0090.1	6.2363e-4
MA0091.1	MA0091.1	0.954
MA0092.1	MA0092.1	0.635
MA0093.1	MA0093.1	0.799
MA0099.2	MA0099.2	5.22055e-6
MA0100.1	MA0100.1	0.704
MA0101.1	MA0101.1	0.817
MA0102.2	MA0102.2	0.365
MA0103.1	MA0103.1	0.0753
MA0104.2	MA0104.2	0.19
MA0105.1	MA0105.1	2.1504e-5
MA0106.1	MA0106.1	0.902
MA0107.1	MA0107.1	0.385
MA0108.2	MA0108.2	1.09637e-10
MA0111.1	MA0111.1	0.0663
MA0112.2	MA0112.2	0.128
MA0113.1	MA0113.1	0.849
MA0114.1	MA0114.1	0.251
MA0115.1	MA0115.1	0.608
MA0116.1	MA0116.1	9.14898e-5
MA0117.1	MA0117.1	0.858
MA0119.1	MA0119.1	0.751
MA0122.1	MA0122.1	0.829
MA0124.1	MA0124.1	0.379
MA0125.1	MA0125.1	0.343
MA0131.1	MA0131.1	0.2
MA0135.1	MA0135.1	0.029
MA0136.1	MA0136.1	7.38462e-19
MA0137.2	MA0137.2	0.711
MA0138.2	MA0138.2	0.438
MA0139.1	MA0139.1	0.0204
MA0140.1	MA0140.1	0.334
MA0141.1	MA0141.1	0.562
MA0142.1	MA0142.1	0.207
MA0143.1	MA0143.1	0.099
MA0144.1	MA0144.1	0.944
MA0145.1	MA0145.1	0.43
MA0146.1	MA0146.1	0.0892
MA0147.1	MA0147.1	0.157
MA0148.1	MA0148.1	0.532
MA0149.1	MA0149.1	0.0622
MA0150.1	MA0150.1	0.161
MA0152.1	MA0152.1	0.0192
MA0153.1	MA0153.1	0.0937
MA0154.1	MA0154.1	0.0369
MA0155.1	MA0155.1	0.709
MA0156.1	MA0156.1	1.36055e-14
MA0157.1	MA0157.1	0.364
MA0159.1	MA0159.1	0.47
MA0160.1	MA0160.1	0.639
MA0162.1	MA0162.1	0.729
MA0163.1	MA0163.1	3.68479e-12
MA0164.1	MA0164.1	0.826
MA0258.1	MA0258.1	0.0358
MA0259.1	MA0259.1	0.412

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13814

Novel motif	Logo	P-value
1	1	0.0806
10	10	0.00508
100	100	0.469
101	101	0.0952
102	102	0.473
103	103	0.799
104	104	0.589
105	105	0.255
106	106	0.41
107	107	0.462
108	108	0.846
109	109	0.108
11	11	0.0398
110	110	0.395
111	111	0.27
112	112	0.285
113	113	0.318
114	114	0.439
115	115	0.27
116	116	0.515
117	117	0.00407
118	118	0.357
119	119	0.551
12	12	0.581
120	120	0.782
121	121	0.964
122	122	0.669
123	123	6.73911e-7
124	124	0.334
125	125	0.948
126	126	0.463
127	127	0.725
128	128	0.751
129	129	0.339
13	13	0.469
130	130	0.659
131	131	0.62
132	132	0.61
133	133	0.364
134	134	0.668
135	135	0.837
136	136	0.721
137	137	0.243
138	138	0.317
139	139	0.194
14	14	0.491
140	140	0.019
141	141	0.539
142	142	0.701
143	143	0.00451
144	144	0.442
145	145	0.135
146	146	0.662
147	147	0.216
148	148	0.0613
149	149	0.868
15	15	0.273
150	150	0.603
151	151	0.542
152	152	0.339
153	153	0.932
154	154	0.496
155	155	0.0623
156	156	0.851
157	157	0.19
158	158	0.22
159	159	0.505
16	16	0.729
160	160	0.287
161	161	0.168
162	162	0.447
163	163	0.287
164	164	0.0628
165	165	0.642
166	166	0.78
167	167	0.139
168	168	0.628
169	169	0.344
17	17	0.915
18	18	0.981
19	19	0.645
2	2	0.912
20	20	0.522
21	21	0.168
22	22	0.834
23	23	0.504
24	24	0.932
25	25	0.0669
26	26	0.0335
27	27	0.239
28	28	0.712
29	29	0.0148
3	3	0.0389
30	30	0.08
31	31	0.991
32	32	0.526
33	33	0.643
34	34	0.938
35	35	0.224
36	36	0.0188
37	37	0.297
38	38	0.544
39	39	0.36
4	4	0.968
40	40	0.289
41	41	0.74
42	42	0.0931
43	43	0.397
44	44	0.502
45	45	0.412
46	46	0.11
47	47	0.0163
48	48	0.0469
49	49	0.0982
5	5	0.795
50	50	1
51	51	0.716
52	52	0.347
53	53	0.117
54	54	0.794
55	55	0.595
56	56	0.4
57	57	0.177
58	58	0.0814
59	59	0.422
6	6	0.394
60	60	0.496
61	61	0.128
62	62	0.0538
63	63	0.357
64	64	0.154
65	65	0.787
66	66	0.672
67	67	0.515
68	68	0.958
69	69	0.986
7	7	0.238
70	70	0.111
71	71	0.0308
72	72	0.17
73	73	0.546
74	74	0.538
75	75	0.0125
76	76	0.195
77	77	0.41
78	78	0.0155
79	79	0.499
8	8	0.432
80	80	0.248
81	81	0.343
82	82	0.0926
83	83	0.407
84	84	0.0336
85	85	0.702
86	86	0.248
87	87	0.663
88	88	0.796
89	89	0.237
9	9	0.871
90	90	0.049
91	91	0.274
92	92	0.451
93	93	0.309
94	94	0.144
95	95	0.0121
96	96	0.176
97	97	0.239
98	98	0.402
99	99	0.367

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13814

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000078,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002050,UBERON:0002193,UBERON:0002342,UBERON:0002346,UBERON:0002368,UBERON:0002370,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002530,UBERON:0002532,UBERON:0003075,UBERON:0003104,UBERON:0003295,UBERON:0003351,UBERON:0003408,UBERON:0003929,UBERON:0004119,UBERON:0004120,UBERON:0004121,UBERON:0004177,UBERON:0004185,UBERON:0004807,UBERON:0004921,UBERON:0005057,UBERON:0005058,UBERON:0005291,UBERON:0005423,UBERON:0005428,UBERON:0005434,UBERON:0005562,UBERON:0005911,UBERON:0006562,UBERON:0006598,UBERON:0007026,UBERON:0007284,UBERON:0007690,UBERON:0009113,UBERON:0009142,UBERON:0009145
+|DRA_sample_Accession=CAGE@SAMD00005705
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000084,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000624,CL:0000723,CL:0000738,CL:0000789,CL:0000790,CL:0000791,CL:0000805,CL:0000806,CL:0000807,CL:0000808,CL:0000809,CL:0000810,CL:0000813,CL:0000827,CL:0000837,CL:0000838,CL:0000893,CL:0000894,CL:0000895,CL:0000896,CL:0000897,CL:0000898,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002320,CL:0002371,CL:0002419,CL:0002420,CL:0002425,CL:0002427,CL:0002428,CL:0002429,CL:0002431,CL:0002432,CL:0002433,CL:0002436,CL:0002489
+|accession_numbers=CAGE;DRX008189;DRR009061;DRZ000486;DRZ001871;DRZ011836;DRZ013221
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001
 |comment=Changed from previous label. TODO: full classification
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
+|expression_enrichment_score=chr7:50343634..50343717,+!p2@IKZF1!1.82!65.22!IKZF1;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.12!GATA3;;chr2:192015701..192015743,-!p1@STAT4!1.62!54.99!STAT4;;chr10:8096631..8096660,+!p1@GATA3!1.61!48.08!GATA3;;chr3:18486354..18486377,-!p2@SATB1!1.56!43.94!SATB1;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.54!IKZF1;;chr17:1959369..1959388,+!p2@HIC1!1.52!82.91!HIC1;;chr20:50159198..50159299,-!p1@NFATC2!1.51!45.60!NFATC2;;chr2:231090433..231090469,+!p1@SP140!1.45!27.36!SP140;;chr6:391743..391759,+!p1@IRF4!1.44!26.81!IRF4;;chr2:192015750..192015793,-!p2@STAT4!1.43!34.82!STAT4;;chr1:25291475..25291511,-!p2@RUNX3!1.43!25.70!RUNX3;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.42!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.40!64.11!AKNA;;chr8:60031619..60031676,-!p1@TOX!1.40!51.40!TOX;;chr1:92951607..92951661,-!p1@GFI1!1.40!24.32!GFI1;;chr5:133450365..133450444,+!p1@TCF7!1.37!98.66!TCF7;;chr7:50343895..50343936,+!p5@IKZF1!1.34!20.73!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.33!26.81!BATF;;chr16:68119324..68119364,+!p1@NFATC3!1.32!86.50!NFATC3;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.34!KDM5D;;chr7:50348268..50348366,+!p4@IKZF1!1.29!18.52!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.28!17.96!ZBP1;;chr3:63953435..63953499,+!p1@ATXN7!1.22!15.75!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.54!BACH2;;chr14:99738138..99738163,-!p1@BCL11B!1.19!14.37!BCL11B;;chr10:8095593..8095625,+!p3@GATA3!1.18!16.58!GATA3;;chr4:109087445..109087463,-!p1@LEF1!1.17!13.82!LEF1;;chr4:109089901..109089930,-!p3@LEF1!1.17!13.82!LEF1;;chr3:71355163..71355209,-!p5@FOXP1!1.16!18.79!FOXP1;;chr5:133451294..133451310,+!p2@TCF7!1.16!13.54!TCF7;;chr19:19729477..19729542,-!p1@PBX4!1.14!27.36!PBX4;;chr20:56195525..56195556,-!p2@ZBP1!1.10!11.61!ZBP1;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.71!ELF1;;chr2:231090471..231090504,+!p2@SP140!0.99!8.84!SP140;;chr7:77428066..77428132,+!p2@PHTF2!0.97!55.27!PHTF2;;chr6:15401104..15401166,+!p5@JARID2!0.97!8.29!JARID2;;chr17:45810594..45810608,+!p1@TBX21!0.95!8.01!TBX21;;chr5:176738887..176738934,-!p1@MXD3!0.94!53.34!MXD3;;chr2:97202991..97203043,+!p3@ARID5A!0.94!7.74!ARID5A;;chr4:109090075..109090095,-!p2@LEF1!0.94!7.74!LEF1;;chr19:16435625..16435682,+!p1@KLF2!0.93!251.20!KLF2;;chr20:52226313..52226350,-!p3@ZNF217!0.93!7.46!ZNF217;;chr2:8822176..8822196,+!p1@ID2!0.92!1067.26!ID2;;chr3:18466787..18466839,-!p1@SATB1!0.92!33.71!SATB1;;chr1:25256756..25256774,-!p1@RUNX3!0.91!13.82!RUNX3;;chr17:46621146..46621180,-!p10@HOXB2!0.91!7.19!HOXB2;;chr3:71007344..71007348,-!p6@FOXP1!0.90!29.29!FOXP1;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.98!RUNX1;;chr2:214015343..214015366,-!p3@IKZF2!0.90!6.91!IKZF2;;chr3:18480217..18480239,-!p3@SATB1!0.90!6.91!SATB1;;chr11:47236584..47236679,+!p1@DDB2!0.89!77.10!DDB2;;chr5:131826457..131826514,-!p1@IRF1!0.88!274.14!IRF1;;chr16:79634595..79634620,-!p2@MAF!0.88!12.44!MAF;;chr12:56415246..56415286,+!p2@IKZF4!0.88!6.63!IKZF4;;chr1:92949331..92949377,-!p2@GFI1!0.87!6.36!GFI1;;chr4:109088089..109088101,-!p11@LEF1!0.87!6.36!LEF1;;chr11:128392085..128392232,-!p1@ETS1!0.85!218.87!ETS1;;chr10:35484053..35484076,+!p1@CREM!0.85!16.03!CREM;;chr1:23857698..23857733,-!p1@E2F2!0.85!11.61!E2F2;;chr3:71542684..71542720,-!p18@FOXP1!0.85!6.08!FOXP1;;chr7:137620650..137620677,-!p3@CREB3L2!0.85!6.08!CREB3L2;;chr8:60031563..60031574,-!p7@TOX!0.85!6.08!TOX;;chr14:99738059..99738086,-!p2@BCL11B!0.85!6.08!BCL11B;;chrX:49121165..49121179,-!p1@FOXP3!0.85!6.08!FOXP3;;chrX:134477924..134477988,-!p1@ZNF75D!0.84!23.77!ZNF75D;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.22!RUNX2;;chr11:128563948..128564003,+!p1@FLI1!0.83!73.79!FLI1;;chr16:79634624..79634642,-!p1@MAF!0.83!24.04!MAF;;chr6:106546808..106546833,+!p3@PRDM1!0.83!7.46!PRDM1;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.80!ZFY;;chr5:321810..321877,+!p1@AHRR!0.82!18.79!AHRR;;chr16:89787937..89787971,+!p1@ZNF276!0.82!15.48!ZNF276;;chr17:46621101..46621143,-!p7@HOXB2!0.82!7.74!HOXB2;;chr16:88752889..88752921,-!p1@SNAI3!0.82!6.63!SNAI3;;chr11:113930425..113930471,+!p1@ZBTB16!0.81!8.01!ZBTB16;;chr3:18487057..18487105,-!p4@SATB1!0.80!5.25!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.80!5.25!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!0.80!5.25!IKZF3;;chr7:137620684..137620711,-!p4@CREB3L2!0.80!5.25!CREB3L2;;chr6:15249128..15249177,+!p4@JARID2!0.79!9.67!JARID2;;chr7:128577972..128578047,+!p1@IRF5!0.79!8.57!IRF5;;chr7:50343864..50343888,+!p7@IKZF1!0.78!4.97!IKZF1;;chr21:36421147..36421193,-!p10@RUNX1!0.78!4.97!RUNX1;;chr17:56565257..56565283,-!p2@HSF5!0.78!4.97!HSF5;;chr3:71179699..71179744,-!p2@FOXP1!0.76!38.97!FOXP1;;chr14:64970670..64970712,-!p3@ZBTB25!0.76!11.05!ZBTB25;;chr4:109089996..109090012,-!p5@LEF1!0.76!4.70!LEF1;;chr14:99737850..99737852,-!p3@BCL11B!0.76!4.70!BCL11B;;chr15:60884706..60884743,-!p1@RORA!0.74!25.70!RORA;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.57!IKZF2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!34.82!STAT5A;;chr14:64971288..64971316,-!p2@ZBTB25!0.73!14.92!ZBTB25;;chr2:148778973..148779035,+!p3@MBD5!0.73!12.4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 34: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11917-125G9
 |is_a=EFO:0002091;;FF:0000002;;FF:0000210
+|is_obsolete=
+|library_id=CNhs13814
+|library_id_phase_based=2:CNhs13814
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11917
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11917
 |name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3
 |namespace=
@@ Line 43: / Line 62: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=125
 |rna_catalog_number=
@@ Line 56: / Line 78: @@
 |rna_weight_ug=5.1888
 |sample_age=23
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 68: / Line 91: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.84315137889694e-232!GO:0043227;membrane-bound organelle;8.22929445728282e-204!GO:0043231;intracellular membrane-bound organelle;1.8702359734326e-203!GO:0043226;organelle;2.73759618045461e-191!GO:0043229;intracellular organelle;1.41362248871836e-190!GO:0005737;cytoplasm;3.08723774894779e-152!GO:0044422;organelle part;3.20044237681282e-136!GO:0044446;intracellular organelle part;2.27002100681459e-134!GO:0044444;cytoplasmic part;3.35686092236969e-109!GO:0032991;macromolecular complex;9.79714457196181e-105!GO:0044237;cellular metabolic process;1.84450202624053e-99!GO:0005634;nucleus;2.21661438315862e-97!GO:0043170;macromolecule metabolic process;4.50869307081378e-95!GO:0044238;primary metabolic process;2.00506078026458e-94!GO:0030529;ribonucleoprotein complex;1.53280731955224e-88!GO:0044428;nuclear part;3.24804714140179e-75!GO:0003723;RNA binding;4.25765346999494e-72!GO:0005739;mitochondrion;1.92760044892131e-68!GO:0043233;organelle lumen;3.03837912814961e-67!GO:0031974;membrane-enclosed lumen;3.03837912814961e-67!GO:0043283;biopolymer metabolic process;1.19110736471418e-60!GO:0005515;protein binding;4.99226198822051e-56!GO:0006412;translation;1.0019362210355e-53!GO:0043234;protein complex;1.62539142877645e-53!GO:0005840;ribosome;6.9068054865632e-53!GO:0019538;protein metabolic process;1.32450515673646e-51!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.98728475274099e-51!GO:0006396;RNA processing;9.09863283411165e-50!GO:0044267;cellular protein metabolic process;3.59771400772782e-48!GO:0010467;gene expression;6.58440343064555e-48!GO:0033036;macromolecule localization;1.81938035403496e-47!GO:0044260;cellular macromolecule metabolic process;1.93752157041271e-47!GO:0044429;mitochondrial part;3.38933949886636e-47!GO:0003735;structural constituent of ribosome;9.72863940576462e-47!GO:0015031;protein transport;1.82652077377337e-45!GO:0008104;protein localization;4.90115872099051e-44!GO:0045184;establishment of protein localization;1.36157070085523e-43!GO:0031090;organelle membrane;1.4472839071583e-43!GO:0016071;mRNA metabolic process;1.48110479368694e-43!GO:0031967;organelle envelope;4.9816408588287e-43!GO:0031975;envelope;1.1729433886073e-42!GO:0031981;nuclear lumen;3.1933210533764e-42!GO:0006259;DNA metabolic process;1.91882394098052e-41!GO:0009059;macromolecule biosynthetic process;2.82855108511855e-41!GO:0033279;ribosomal subunit;4.64776006717479e-40!GO:0006397;mRNA processing;2.0708379469111e-37!GO:0008380;RNA splicing;4.9351823183614e-37!GO:0005829;cytosol;3.26624416156043e-36!GO:0044249;cellular biosynthetic process;3.39689935127693e-36!GO:0009058;biosynthetic process;7.32682865467236e-36!GO:0046907;intracellular transport;9.07298746427434e-35!GO:0016043;cellular component organization and biogenesis;1.97055418435628e-34!GO:0003676;nucleic acid binding;1.00019091089149e-33!GO:0006886;intracellular protein transport;4.24472728998842e-33!GO:0065003;macromolecular complex assembly;6.40547874279553e-33!GO:0005740;mitochondrial envelope;7.5854915742153e-30!GO:0007049;cell cycle;1.90742272372031e-29!GO:0019866;organelle inner membrane;2.35414704416388e-29!GO:0006996;organelle organization and biogenesis;3.44312508938639e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.34802679404079e-29!GO:0022607;cellular component assembly;8.68587880258693e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.65037289071261e-28!GO:0043228;non-membrane-bound organelle;1.6698833723834e-28!GO:0043232;intracellular non-membrane-bound organelle;1.6698833723834e-28!GO:0031966;mitochondrial membrane;2.24348671704998e-28!GO:0005681;spliceosome;2.48143563844697e-28!GO:0000166;nucleotide binding;7.29397724467113e-28!GO:0005654;nucleoplasm;3.20445306870637e-27!GO:0005743;mitochondrial inner membrane;1.99124384166499e-26!GO:0051641;cellular localization;3.73251221259199e-26!GO:0051649;establishment of cellular localization;7.39200404179078e-26!GO:0044445;cytosolic part;2.07999904596541e-25!GO:0006974;response to DNA damage stimulus;8.98504558513987e-25!GO:0005694;chromosome;1.05995417756178e-24!GO:0012501;programmed cell death;1.99395399475948e-24!GO:0006915;apoptosis;2.17673122731671e-24!GO:0022402;cell cycle process;1.25096441437966e-23!GO:0008219;cell death;2.96707580066362e-23!GO:0016265;death;2.96707580066362e-23!GO:0044427;chromosomal part;3.33758827962075e-23!GO:0006512;ubiquitin cycle;1.05208597767414e-22!GO:0006119;oxidative phosphorylation;1.67498274758146e-22!GO:0016070;RNA metabolic process;4.22894273049036e-22!GO:0031980;mitochondrial lumen;3.26160219041881e-21!GO:0005759;mitochondrial matrix;3.26160219041881e-21!GO:0032553;ribonucleotide binding;3.6154071772035e-21!GO:0032555;purine ribonucleotide binding;3.6154071772035e-21!GO:0015935;small ribosomal subunit;5.71159984692946e-21!GO:0044455;mitochondrial membrane part;6.92333965082161e-21!GO:0017076;purine nucleotide binding;1.34899774890705e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.60235186260393e-20!GO:0016462;pyrophosphatase activity;1.96960837718493e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.12850434007943e-20!GO:0006281;DNA repair;2.41534366219559e-20!GO:0015934;large ribosomal subunit;2.72542420025411e-20!GO:0051276;chromosome organization and biogenesis;4.62571192922675e-20!GO:0044451;nucleoplasm part;5.36961953099347e-20!GO:0017111;nucleoside-triphosphatase activity;9.94370458355908e-20!GO:0000278;mitotic cell cycle;1.63031426098136e-19!GO:0005524;ATP binding;4.34482298244186e-19!GO:0016874;ligase activity;4.49429124623031e-19!GO:0044265;cellular macromolecule catabolic process;6.32851594726258e-19!GO:0022618;protein-RNA complex assembly;8.65344462613568e-19!GO:0043412;biopolymer modification;9.18308311877262e-19!GO:0032559;adenyl ribonucleotide binding;2.37907349972464e-18!GO:0030554;adenyl nucleotide binding;1.36059800202425e-17!GO:0042981;regulation of apoptosis;2.10128837801811e-17!GO:0005746;mitochondrial respiratory chain;2.68208645975375e-17!GO:0043067;regulation of programmed cell death;4.07280374409161e-17!GO:0006605;protein targeting;6.77927943317362e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;8.37108000271349e-17!GO:0006464;protein modification process;1.04277675253498e-16!GO:0012505;endomembrane system;1.51254388815628e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.94372228518753e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.59769231984008e-16!GO:0006323;DNA packaging;2.98006658743586e-16!GO:0019941;modification-dependent protein catabolic process;2.98006658743586e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.98006658743586e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.3365771627155e-16!GO:0003954;NADH dehydrogenase activity;3.3365771627155e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.3365771627155e-16!GO:0042623;ATPase activity, coupled;3.68788970919392e-16!GO:0022403;cell cycle phase;3.81846624281864e-16!GO:0016887;ATPase activity;5.95812045296952e-16!GO:0044257;cellular protein catabolic process;6.43190355180331e-16!GO:0006511;ubiquitin-dependent protein catabolic process;6.51704502074316e-16!GO:0006913;nucleocytoplasmic transport;6.7590729863501e-16!GO:0043285;biopolymer catabolic process;9.02838092557303e-16!GO:0005730;nucleolus;9.66855261960369e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.12528499180361e-15!GO:0008135;translation factor activity, nucleic acid binding;1.2967484656115e-15!GO:0043687;post-translational protein modification;1.48934880392186e-15!GO:0009719;response to endogenous stimulus;1.50735412684662e-15!GO:0000785;chromatin;1.56338791320121e-15!GO:0051169;nuclear transport;1.61966506409593e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.95185799209403e-15!GO:0051726;regulation of cell cycle;2.07849940841452e-15!GO:0000087;M phase of mitotic cell cycle;2.75100747417502e-15!GO:0000074;regulation of progression through cell cycle;3.6952634348825e-15!GO:0005761;mitochondrial ribosome;3.82744351087639e-15!GO:0000313;organellar ribosome;3.82744351087639e-15!GO:0006457;protein folding;5.60971227221866e-15!GO:0007067;mitosis;5.69772992725953e-15!GO:0009057;macromolecule catabolic process;6.23386782055064e-15!GO:0016604;nuclear body;2.04162927643785e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.20017861025064e-14!GO:0006333;chromatin assembly or disassembly;2.23127857243926e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.80991704546542e-14!GO:0042773;ATP synthesis coupled electron transport;3.80991704546542e-14!GO:0005635;nuclear envelope;4.25850665668745e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.36290964098709e-14!GO:0045271;respiratory chain complex I;4.36290964098709e-14!GO:0005747;mitochondrial respiratory chain complex I;4.36290964098709e-14!GO:0044248;cellular catabolic process;9.87375134290711e-14!GO:0065004;protein-DNA complex assembly;1.22841379132006e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.58170789234984e-13!GO:0008134;transcription factor binding;2.24024533939898e-13!GO:0048770;pigment granule;2.38720372201464e-13!GO:0042470;melanosome;2.38720372201464e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.55302805139615e-13!GO:0000375;RNA splicing, via transesterification reactions;2.55302805139615e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.55302805139615e-13!GO:0031965;nuclear membrane;3.84943618883338e-13!GO:0051186;cofactor metabolic process;3.97189662457564e-13!GO:0006260;DNA replication;8.80306293140795e-13!GO:0003743;translation initiation factor activity;9.81514217184597e-13!GO:0000279;M phase;1.05402468170556e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.72081086437856e-12!GO:0051301;cell division;1.75197695355025e-12!GO:0006413;translational initiation;2.39931085536843e-12!GO:0006334;nucleosome assembly;4.20758170718391e-12!GO:0044453;nuclear membrane part;4.36186512510732e-12!GO:0030163;protein catabolic process;6.82785011784659e-12!GO:0050794;regulation of cellular process;8.17739798795559e-12!GO:0006793;phosphorus metabolic process;1.05329916771966e-11!GO:0006796;phosphate metabolic process;1.05329916771966e-11!GO:0017038;protein import;1.62263549777606e-11!GO:0051082;unfolded protein binding;1.78509592075883e-11!GO:0031497;chromatin assembly;2.92448815338956e-11!GO:0004386;helicase activity;3.0029750629125e-11!GO:0048193;Golgi vesicle transport;5.40949336838233e-11!GO:0016607;nuclear speck;6.78836588921434e-11!GO:0006446;regulation of translational initiation;9.66597178226702e-11!GO:0042254;ribosome biogenesis and assembly;9.89627679662208e-11!GO:0008639;small protein conjugating enzyme activity;1.39897318955273e-10!GO:0006732;coenzyme metabolic process;2.36722547631193e-10!GO:0044432;endoplasmic reticulum part;3.05183169834549e-10!GO:0004842;ubiquitin-protein ligase activity;3.23724688630688e-10!GO:0009259;ribonucleotide metabolic process;3.75278808061018e-10!GO:0019787;small conjugating protein ligase activity;4.77211992348705e-10!GO:0016310;phosphorylation;6.4451912227497e-10!GO:0043566;structure-specific DNA binding;7.27015193900726e-10!GO:0003697;single-stranded DNA binding;7.74440362101767e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.99163638027594e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.4639550961994e-10!GO:0005643;nuclear pore;9.71208044668853e-10!GO:0008026;ATP-dependent helicase activity;1.01939949362538e-09!GO:0006164;purine nucleotide biosynthetic process;1.08306830253526e-09!GO:0009260;ribonucleotide biosynthetic process;1.23838803035954e-09!GO:0016787;hydrolase activity;1.32378156780182e-09!GO:0006163;purine nucleotide metabolic process;1.32378156780182e-09!GO:0006916;anti-apoptosis;1.3505440212547e-09!GO:0005783;endoplasmic reticulum;1.39003066885581e-09!GO:0019829;cation-transporting ATPase activity;1.70797108898377e-09!GO:0005794;Golgi apparatus;1.72666407017646e-09!GO:0043069;negative regulation of programmed cell death;2.6431959972887e-09!GO:0016568;chromatin modification;2.72483103312973e-09!GO:0009152;purine ribonucleotide biosynthetic process;2.74539686884394e-09!GO:0009150;purine ribonucleotide metabolic process;3.5946157525665e-09!GO:0043066;negative regulation of apoptosis;3.67339220421438e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.26295473245352e-09!GO:0065002;intracellular protein transport across a membrane;4.3155522280109e-09!GO:0000786;nucleosome;4.50572540582445e-09!GO:0008565;protein transporter activity;5.96034312969924e-09!GO:0050657;nucleic acid transport;6.53085531156513e-09!GO:0051236;establishment of RNA localization;6.53085531156513e-09!GO:0050658;RNA transport;6.53085531156513e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;6.84770983122209e-09!GO:0006403;RNA localization;6.97745514007367e-09!GO:0005839;proteasome core complex (sensu Eukaryota);7.62625135715208e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.0763533443734e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.2059646341826e-08!GO:0006917;induction of apoptosis;1.75899572705356e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.80100536084264e-08!GO:0046930;pore complex;1.89062160928674e-08!GO:0005789;endoplasmic reticulum membrane;1.89780936044897e-08!GO:0016881;acid-amino acid ligase activity;2.12970631311697e-08!GO:0003712;transcription cofactor activity;2.24024591910848e-08!GO:0006399;tRNA metabolic process;2.64363305612935e-08!GO:0051170;nuclear import;2.78111524715195e-08!GO:0051188;cofactor biosynthetic process;2.91654588498697e-08!GO:0012502;induction of programmed cell death;2.96543604562755e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.33628044376371e-08!GO:0007243;protein kinase cascade;3.65673421234655e-08!GO:0045786;negative regulation of progression through cell cycle;3.9880415546722e-08!GO:0004298;threonine endopeptidase activity;4.06344764670376e-08!GO:0006606;protein import into nucleus;4.25504735211754e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.46954260546884e-08!GO:0016192;vesicle-mediated transport;4.55063024969806e-08!GO:0009055;electron carrier activity;4.61400641361316e-08!GO:0016740;transferase activity;6.08408513746602e-08!GO:0015986;ATP synthesis coupled proton transport;7.29476563685947e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.29476563685947e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.03576646663953e-08!GO:0048523;negative regulation of cellular process;1.01863775484817e-07!GO:0043065;positive regulation of apoptosis;1.04884830804287e-07!GO:0050789;regulation of biological process;1.15990963520296e-07!GO:0009060;aerobic respiration;1.29367850398741e-07!GO:0051246;regulation of protein metabolic process;1.67965413669528e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.75066922048368e-07!GO:0043068;positive regulation of programmed cell death;1.7635148047325e-07!GO:0016779;nucleotidyltransferase activity;1.78643865767685e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.9518879499019e-07!GO:0051028;mRNA transport;2.03677400682714e-07!GO:0006364;rRNA processing;2.23789242974817e-07!GO:0016072;rRNA metabolic process;2.2505560617147e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.63071372233455e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.00171400725976e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.00171400725976e-07!GO:0065009;regulation of a molecular function;3.40906083616628e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.21655592303013e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.21655592303013e-07!GO:0005768;endosome;4.63900683104562e-07!GO:0009141;nucleoside triphosphate metabolic process;5.21393120663821e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.21442544408374e-07!GO:0006261;DNA-dependent DNA replication;5.21442544408374e-07!GO:0006754;ATP biosynthetic process;5.47180341798493e-07!GO:0006753;nucleoside phosphate metabolic process;5.47180341798493e-07!GO:0032446;protein modification by small protein conjugation;6.53508106258424e-07!GO:0019899;enzyme binding;7.16165963854828e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.25354551179325e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.25354551179325e-07!GO:0009056;catabolic process;8.44734710957887e-07!GO:0006461;protein complex assembly;8.75517343776776e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.32076456145447e-07!GO:0015399;primary active transmembrane transporter activity;9.32076456145447e-07!GO:0006888;ER to Golgi vesicle-mediated transport;9.44391662221191e-07!GO:0048519;negative regulation of biological process;1.16281523924845e-06!GO:0008632;apoptotic program;1.30853117857135e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.32098908898339e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.32098908898339e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.32098908898339e-06!GO:0016567;protein ubiquitination;1.32806936907008e-06!GO:0030120;vesicle coat;1.36665601806319e-06!GO:0030662;coated vesicle membrane;1.36665601806319e-06!GO:0046034;ATP metabolic process;1.43520517421762e-06!GO:0045333;cellular respiration;1.44332339949544e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.53980397788862e-06!GO:0019222;regulation of metabolic process;1.69212999602316e-06!GO:0007005;mitochondrion organization and biogenesis;1.75637155996672e-06!GO:0045259;proton-transporting ATP synthase complex;1.88139390548662e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.64811316750854e-06!GO:0009117;nucleotide metabolic process;2.71079333020151e-06!GO:0051325;interphase;2.72163888762015e-06!GO:0000775;chromosome, pericentric region;2.72163888762015e-06!GO:0009108;coenzyme biosynthetic process;2.9775843738856e-06!GO:0043038;amino acid activation;3.18794870046149e-06!GO:0006418;tRNA aminoacylation for protein translation;3.18794870046149e-06!GO:0043039;tRNA aminoacylation;3.18794870046149e-06!GO:0006310;DNA recombination;3.27876432829311e-06!GO:0000245;spliceosome assembly;4.12936303169942e-06!GO:0048475;coated membrane;4.12936303169942e-06!GO:0030117;membrane coat;4.12936303169942e-06!GO:0051329;interphase of mitotic cell cycle;4.13098812180484e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.34646855731335e-06!GO:0006099;tricarboxylic acid cycle;4.53818157830143e-06!GO:0046356;acetyl-CoA catabolic process;4.53818157830143e-06!GO:0005762;mitochondrial large ribosomal subunit;4.65280732824997e-06!GO:0000315;organellar large ribosomal subunit;4.65280732824997e-06!GO:0000151;ubiquitin ligase complex;5.09854258315594e-06!GO:0005793;ER-Golgi intermediate compartment;5.19714373411932e-06!GO:0051168;nuclear export;5.42414507575627e-06!GO:0048522;positive regulation of cellular process;5.54391591996815e-06!GO:0004674;protein serine/threonine kinase activity;6.93343188934053e-06!GO:0005813;centrosome;7.05450642099597e-06!GO:0003713;transcription coactivator activity;8.49568452142612e-06!GO:0016563;transcription activator activity;8.69296926370954e-06!GO:0005819;spindle;9.00528071168476e-06!GO:0006084;acetyl-CoA metabolic process;9.81731514592572e-06!GO:0005815;microtubule organizing center;1.15104624451271e-05!GO:0006613;cotranslational protein targeting to membrane;1.26557386335241e-05!GO:0015630;microtubule cytoskeleton;1.56379425820082e-05!GO:0006401;RNA catabolic process;1.65080599742876e-05!GO:0006752;group transfer coenzyme metabolic process;1.75835280178791e-05!GO:0007242;intracellular signaling cascade;2.06825808076003e-05!GO:0000075;cell cycle checkpoint;2.20248827356508e-05!GO:0003724;RNA helicase activity;2.3940932961595e-05!GO:0043492;ATPase activity, coupled to movement of substances;2.48357776443567e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;2.53595977308341e-05!GO:0005657;replication fork;2.90561046162692e-05!GO:0003690;double-stranded DNA binding;2.90561046162692e-05!GO:0006366;transcription from RNA polymerase II promoter;2.97197528412194e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.36410562551496e-05!GO:0005773;vacuole;3.45739301757995e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;3.52750909121566e-05!GO:0009109;coenzyme catabolic process;3.88902594677696e-05!GO:0007088;regulation of mitosis;3.8963595381385e-05!GO:0043623;cellular protein complex assembly;5.48452242293893e-05!GO:0006612;protein targeting to membrane;5.48936151462745e-05!GO:0051187;cofactor catabolic process;6.2993255050869e-05!GO:0031323;regulation of cellular metabolic process;6.422832356073e-05!GO:0006402;mRNA catabolic process;7.81457504254361e-05!GO:0031324;negative regulation of cellular metabolic process;0.000104361934177888!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000105910082421822!GO:0000314;organellar small ribosomal subunit;0.000121437766021783!GO:0005763;mitochondrial small ribosomal subunit;0.000121437766021783!GO:0003684;damaged DNA binding;0.000127151731616394!GO:0008094;DNA-dependent ATPase activity;0.00013069432554571!GO:0000323;lytic vacuole;0.000132266081058182!GO:0005764;lysosome;0.000132266081058182!GO:0050790;regulation of catalytic activity;0.000136457077490759!GO:0065007;biological regulation;0.000142402392847266!GO:0016363;nuclear matrix;0.000157678124954428!GO:0006818;hydrogen transport;0.000164336546080856!GO:0015992;proton transport;0.000164336546080856!GO:0005885;Arp2/3 protein complex;0.000191295460457982!GO:0044431;Golgi apparatus part;0.000201589262203647!GO:0003899;DNA-directed RNA polymerase activity;0.000204174419772333!GO:0005770;late endosome;0.000226475249140653!GO:0005525;GTP binding;0.000226640936486852!GO:0008186;RNA-dependent ATPase activity;0.000263685076896553!GO:0005798;Golgi-associated vesicle;0.000265741193386579!GO:0006302;double-strand break repair;0.000270072062098165!GO:0009967;positive regulation of signal transduction;0.000288715247514638!GO:0051427;hormone receptor binding;0.000304141049939317!GO:0008654;phospholipid biosynthetic process;0.000315402142008434!GO:0009615;response to virus;0.000316412305466208!GO:0005637;nuclear inner membrane;0.000361210434590499!GO:0048518;positive regulation of biological process;0.000377756557101173!GO:0043021;ribonucleoprotein binding;0.000391945363310471!GO:0030384;phosphoinositide metabolic process;0.000416846939025848!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000419107460462159!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000426310138432144!GO:0007006;mitochondrial membrane organization and biogenesis;0.000445447837315013!GO:0006350;transcription;0.000448278373138651!GO:0004518;nuclease activity;0.000450339708179891!GO:0044440;endosomal part;0.000471389940841714!GO:0010008;endosome membrane;0.000471389940841714!GO:0003729;mRNA binding;0.000528580494188617!GO:0051252;regulation of RNA metabolic process;0.000528894906220685!GO:0009892;negative regulation of metabolic process;0.00055730807319198!GO:0008234;cysteine-type peptidase activity;0.000573846132156471!GO:0043681;protein import into mitochondrion;0.000575996935084018!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000585507008763725!GO:0003924;GTPase activity;0.000592635223484153!GO:0016564;transcription repressor activity;0.000596505869170836!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000597477106658597!GO:0035257;nuclear hormone receptor binding;0.000597977169073228!GO:0009165;nucleotide biosynthetic process;0.00061543102746829!GO:0000287;magnesium ion binding;0.000742507600830141!GO:0006417;regulation of translation;0.00075688978825422!GO:0004004;ATP-dependent RNA helicase activity;0.000770929859563064!GO:0000082;G1/S transition of mitotic cell cycle;0.000890253399259009!GO:0006611;protein export from nucleus;0.00095111903207715!GO:0006414;translational elongation;0.000951953049250378!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000998119603974742!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000998119603974742!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000998119603974742!GO:0006289;nucleotide-excision repair;0.00100033763688664!GO:0007050;cell cycle arrest;0.0010181088444327!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00102982313372261!GO:0042110;T cell activation;0.00106913000408891!GO:0048468;cell development;0.0010796885320471!GO:0004527;exonuclease activity;0.00109549379704279!GO:0006891;intra-Golgi vesicle-mediated transport;0.00109549379704279!GO:0005667;transcription factor complex;0.00112785966131911!GO:0007093;mitotic cell cycle checkpoint;0.00118980967856624!GO:0005769;early endosome;0.00119793887319322!GO:0051052;regulation of DNA metabolic process;0.00133066243623899!GO:0006650;glycerophospholipid metabolic process;0.00136021561743336!GO:0000776;kinetochore;0.00136326246256185!GO:0007051;spindle organization and biogenesis;0.00137129958510308!GO:0046489;phosphoinositide biosynthetic process;0.00137336196372345!GO:0045454;cell redox homeostasis;0.00149456037035763!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00153692792545247!GO:0003678;DNA helicase activity;0.00160488487098668!GO:0019867;outer membrane;0.00166661711830587!GO:0003682;chromatin binding;0.00173375887056866!GO:0005741;mitochondrial outer membrane;0.00173422916973188!GO:0032561;guanyl ribonucleotide binding;0.00178380495107481!GO:0019001;guanyl nucleotide binding;0.00178380495107481!GO:0030658;transport vesicle membrane;0.00182954453004629!GO:0010468;regulation of gene expression;0.00186149705454579!GO:0031968;organelle outer membrane;0.00187669151823183!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0020130492473132!GO:0000139;Golgi membrane;0.00202094485456753!GO:0008270;zinc ion binding;0.00204943485577059!GO:0005684;U2-dependent spliceosome;0.00204943485577059!GO:0006091;generation of precursor metabolites and energy;0.00208331997030584!GO:0016853;isomerase activity;0.00222810738711164!GO:0031982;vesicle;0.00229803821294652!GO:0019843;rRNA binding;0.00238318449542895!GO:0022415;viral reproductive process;0.0024073307060547!GO:0007059;chromosome segregation;0.0024501660060813!GO:0006284;base-excision repair;0.0024501660060813!GO:0060090;molecular adaptor activity;0.00248939793299469!GO:0051920;peroxiredoxin activity;0.00253488566180543!GO:0022890;inorganic cation transmembrane transporter activity;0.00257440438620137!GO:0015631;tubulin binding;0.00257440438620137!GO:0051789;response to protein stimulus;0.00261343026089211!GO:0006986;response to unfolded protein;0.00261343026089211!GO:0031326;regulation of cellular biosynthetic process;0.00264281931769348!GO:0046474;glycerophospholipid biosynthetic process;0.00269117389640199!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00269117389640199!GO:0048500;signal recognition particle;0.00292935894029373!GO:0008033;tRNA processing;0.00298353251582892!GO:0042802;identical protein binding;0.0029916213733126!GO:0043281;regulation of caspase activity;0.0029916213733126!GO:0016741;transferase activity, transferring one-carbon groups;0.00299666140018859!GO:0008168;methyltransferase activity;0.00303846231279586!GO:0051223;regulation of protein transport;0.00318975664671245!GO:0044438;microbody part;0.00323071574429785!GO:0044439;peroxisomal part;0.00323071574429785!GO:0006352;transcription initiation;0.00324618236889677!GO:0031072;heat shock protein binding;0.00325294857497444!GO:0046822;regulation of nucleocytoplasmic transport;0.00343494509522826!GO:0005048;signal sequence binding;0.00344878167711749!GO:0003677;DNA binding;0.0036621791812801!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00367561304874572!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00367561304874572!GO:0032508;DNA duplex unwinding;0.00373453607331245!GO:0032392;DNA geometric change;0.00373453607331245!GO:0008637;apoptotic mitochondrial changes;0.00379388085961636!GO:0008624;induction of apoptosis by extracellular signals;0.00417199690747809!GO:0006383;transcription from RNA polymerase III promoter;0.00422604274059182!GO:0009124;nucleoside monophosphate biosynthetic process;0.00447351354156969!GO:0009123;nucleoside monophosphate metabolic process;0.00447351354156969!GO:0031903;microbody membrane;0.00447795644739285!GO:0005778;peroxisomal membrane;0.00447795644739285!GO:0019900;kinase binding;0.00449429563135054!GO:0030660;Golgi-associated vesicle membrane;0.00461478820452225!GO:0051251;positive regulation of lymphocyte activation;0.00471543190469897!GO:0019901;protein kinase binding;0.00479104483790526!GO:0031252;leading edge;0.00480518746571023!GO:0051336;regulation of hydrolase activity;0.00484517034909887!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00491585954607773!GO:0045047;protein targeting to ER;0.00491585954607773!GO:0006405;RNA export from nucleus;0.00509608790612001!GO:0016301;kinase activity;0.00513693156871854!GO:0008312;7S RNA binding;0.0052327612239089!GO:0043488;regulation of mRNA stability;0.0052327612239089!GO:0043487;regulation of RNA stability;0.0052327612239089!GO:0003711;transcription elongation regulator activity;0.00525675085134258!GO:0031988;membrane-bound vesicle;0.00545196640136739!GO:0007265;Ras protein signal transduction;0.00585228099484623!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0059156806662456!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00603684147029016!GO:0006268;DNA unwinding during replication;0.00610489717532966!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.00623541765746349!GO:0006839;mitochondrial transport;0.00625945955458788!GO:0031410;cytoplasmic vesicle;0.00629892237518811!GO:0000209;protein polyubiquitination;0.00642600118927281!GO:0016481;negative regulation of transcription;0.00660581808035814!GO:0006607;NLS-bearing substrate import into nucleus;0.00667034581384654!GO:0007264;small GTPase mediated signal transduction;0.00667323804754666!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00678672240853884!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00697024605008026!GO:0015002;heme-copper terminal oxidase activity;0.00697024605008026!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00697024605008026!GO:0004129;cytochrome-c oxidase activity;0.00697024605008026!GO:0047485;protein N-terminus binding;0.00723383805849893!GO:0051539;4 iron, 4 sulfur cluster binding;0.00724292930959119!GO:0030137;COPI-coated vesicle;0.00727636290628196!GO:0032259;methylation;0.00729176495211351!GO:0016311;dephosphorylation;0.00729210634798015!GO:0030118;clathrin coat;0.00731874140775973!GO:0051540;metal cluster binding;0.00743943237869202!GO:0051536;iron-sulfur cluster binding;0.00743943237869202!GO:0005774;vacuolar membrane;0.00748434879488117!GO:0045936;negative regulation of phosphate metabolic process;0.00750259486137353!GO:0030663;COPI coated vesicle membrane;0.00781756402811586!GO:0030126;COPI vesicle coat;0.00781756402811586!GO:0008629;induction of apoptosis by intracellular signals;0.00794215091864403!GO:0051087;chaperone binding;0.00799339647050279!GO:0030176;integral to endoplasmic reticulum membrane;0.00811027270931718!GO:0031124;mRNA 3'-end processing;0.00816746951960904!GO:0043596;nuclear replication fork;0.00816746951960904!GO:0006626;protein targeting to mitochondrion;0.00817374225172229!GO:0016788;hydrolase activity, acting on ester bonds;0.00828328411536615!GO:0016197;endosome transport;0.00833111948933085!GO:0006497;protein amino acid lipidation;0.00839172476849222!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00839172476849222!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00839452068293527!GO:0033116;ER-Golgi intermediate compartment membrane;0.00863223900617793!GO:0006506;GPI anchor biosynthetic process;0.00880443256932749!GO:0044452;nucleolar part;0.00887941990101629!GO:0001772;immunological synapse;0.00899420990713857!GO:0042770;DNA damage response, signal transduction;0.00921292256602833!GO:0016251;general RNA polymerase II transcription factor activity;0.00930877788098484!GO:0006505;GPI anchor metabolic process;0.00948184077765623!GO:0043621;protein self-association;0.00963929474514744!GO:0042393;histone binding;0.0099142870239385!GO:0003714;transcription corepressor activity;0.0099142870239385!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0099142870239385!GO:0010257;NADH dehydrogenase complex assembly;0.0099142870239385!GO:0033108;mitochondrial respiratory chain complex assembly;0.0099142870239385!GO:0042101;T cell receptor complex;0.00992648535264474!GO:0008139;nuclear localization sequence binding;0.00992648535264474!GO:0016584;nucleosome positioning;0.0099966641441047!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0100998480630571!GO:0000228;nuclear chromosome;0.0101160176955503!GO:0016605;PML body;0.0101501518851373!GO:0009161;ribonucleoside monophosphate metabolic process;0.010225579152313!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.010225579152313!GO:0006595;polyamine metabolic process;0.0103154127560264!GO:0048487;beta-tubulin binding;0.0105996198656947!GO:0043414;biopolymer methylation;0.0109807382276273!GO:0003746;translation elongation factor activity;0.011045306770367!GO:0016023;cytoplasmic membrane-bound vesicle;0.0113274353351163!GO:0015980;energy derivation by oxidation of organic compounds;0.0113292552583684!GO:0008022;protein C-terminus binding;0.0114053580959893!GO:0030518;steroid hormone receptor signaling pathway;0.0114760105887899!GO:0006338;chromatin remodeling;0.0115170382014807!GO:0046483;heterocycle metabolic process;0.0119119897181067!GO:0004177;aminopeptidase activity;0.0120043224168037!GO:0051092;activation of NF-kappaB transcription factor;0.0121323828282277!GO:0048471;perinuclear region of cytoplasm;0.0122787708762133!GO:0009889;regulation of biosynthetic process;0.0124164181973631!GO:0000059;protein import into nucleus, docking;0.0124446209517899!GO:0051881;regulation of mitochondrial membrane potential;0.0124481228694215!GO:0006919;caspase activation;0.012797063145374!GO:0016491;oxidoreductase activity;0.0132358213465905!GO:0032774;RNA biosynthetic process;0.0133832494714155!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0134558461071327!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0135006392266277!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0135006392266277!GO:0030880;RNA polymerase complex;0.0135006392266277!GO:0032940;secretion by cell;0.0137006680991044!GO:0016791;phosphoric monoester hydrolase activity;0.0137014525380197!GO:0031902;late endosome membrane;0.0137941513169902!GO:0019210;kinase inhibitor activity;0.0138249011952991!GO:0030127;COPII vesicle coat;0.0139786194381886!GO:0012507;ER to Golgi transport vesicle membrane;0.0139786194381886!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0143497869840537!GO:0006779;porphyrin biosynthetic process;0.0143497869840537!GO:0033014;tetrapyrrole biosynthetic process;0.0143497869840537!GO:0004532;exoribonuclease activity;0.014372051641449!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.014372051641449!GO:0016859;cis-trans isomerase activity;0.014372051641449!GO:0050870;positive regulation of T cell activation;0.0145765686516294!GO:0000049;tRNA binding;0.0146928998049847!GO:0044437;vacuolar part;0.0148239088320697!GO:0051235;maintenance of localization;0.0149720176071371!GO:0016272;prefoldin complex;0.0149825519283398!GO:0030134;ER to Golgi transport vesicle;0.0150872360589166!GO:0046914;transition metal ion binding;0.0151291530816195!GO:0005788;endoplasmic reticulum lumen;0.0152023153814318!GO:0006351;transcription, DNA-dependent;0.0153412082180559!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0155697617347465!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0156528586458906!GO:0005869;dynactin complex;0.0156795267812685!GO:0042326;negative regulation of phosphorylation;0.015751591209915!GO:0045045;secretory pathway;0.015751591209915!GO:0006950;response to stress;0.015751591209915!GO:0030521;androgen receptor signaling pathway;0.015751591209915!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0159255317750649!GO:0001836;release of cytochrome c from mitochondria;0.0159258734998551!GO:0009112;nucleobase metabolic process;0.0159762224325869!GO:0004576;oligosaccharyl transferase activity;0.016087273535541!GO:0046966;thyroid hormone receptor binding;0.01609865833384!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0161323832850548!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0161323832850548!GO:0009126;purine nucleoside monophosphate metabolic process;0.0161323832850548!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0161323832850548!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0162159930258162!GO:0006778;porphyrin metabolic process;0.01645278807521!GO:0033013;tetrapyrrole metabolic process;0.01645278807521!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.01645278807521!GO:0046467;membrane lipid biosynthetic process;0.016468820663958!GO:0005765;lysosomal membrane;0.0167703124368988!GO:0007052;mitotic spindle organization and biogenesis;0.0174346320279158!GO:0004860;protein kinase inhibitor activity;0.0174346320279158!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0176538139506093!GO:0030867;rough endoplasmic reticulum membrane;0.0176793309631685!GO:0005777;peroxisome;0.0176837785283949!GO:0042579;microbody;0.0176837785283949!GO:0045792;negative regulation of cell size;0.0178370655260126!GO:0008408;3'-5' exonuclease activity;0.017888052804136!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0186041564765249!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0186041564765249!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0186041564765249!GO:0046426;negative regulation of JAK-STAT cascade;0.0187611729146503!GO:0030308;negative regulation of cell growth;0.0190027021478137!GO:0019079;viral genome replication;0.0193298409184338!GO:0030125;clathrin vesicle coat;0.0195351715883199!GO:0030665;clathrin coated vesicle membrane;0.0195351715883199!GO:0000339;RNA cap binding;0.0195847661343931!GO:0031123;RNA 3'-end processing;0.0196412179051305!GO:0019904;protein domain specific binding;0.0200126024267092!GO:0009116;nucleoside metabolic process;0.02041829504121!GO:0005521;lamin binding;0.0204702537311091!GO:0045449;regulation of transcription;0.0205932504047433!GO:0051090;regulation of transcription factor activity;0.0206141037714737!GO:0019318;hexose metabolic process;0.0208385476407752!GO:0008017;microtubule binding;0.0213321596965716!GO:0035258;steroid hormone receptor binding;0.0215141378801952!GO:0005996;monosaccharide metabolic process;0.0217513576034133!GO:0046649;lymphocyte activation;0.0217914547013448!GO:0005070;SH3/SH2 adaptor activity;0.0219083334031053!GO:0043022;ribosome binding;0.0219083334031053!GO:0030695;GTPase regulator activity;0.0219668735827597!GO:0043280;positive regulation of caspase activity;0.0219946871946464!GO:0000922;spindle pole;0.0223290670045701!GO:0005669;transcription factor TFIID complex;0.0223290670045701!GO:0031625;ubiquitin protein ligase binding;0.0223761475125497!GO:0004722;protein serine/threonine phosphatase activity;0.022380927662301!GO:0019783;small conjugating protein-specific protease activity;0.0224305597621984!GO:0042158;lipoprotein biosynthetic process;0.0224366748608721!GO:0030522;intracellular receptor-mediated signaling pathway;0.0229671776597565!GO:0006914;autophagy;0.0237405254172449!GO:0051059;NF-kappaB binding;0.0237734475591804!GO:0004003;ATP-dependent DNA helicase activity;0.0239172037031512!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0241059855726646!GO:0000428;DNA-directed RNA polymerase complex;0.0241059855726646!GO:0051098;regulation of binding;0.0245481226333371!GO:0040029;regulation of gene expression, epigenetic;0.0248026394816787!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0249199369538228!GO:0008250;oligosaccharyl transferase complex;0.0249199369538228!GO:0006007;glucose catabolic process;0.0249199369538228!GO:0050865;regulation of cell activation;0.0249868891535949!GO:0044454;nuclear chromosome part;0.0249868891535949!GO:0008320;protein transmembrane transporter activity;0.0251176972492027!GO:0051249;regulation of lymphocyte activation;0.0256139761583006!GO:0004843;ubiquitin-specific protease activity;0.0259858216335145!GO:0016790;thiolester hydrolase activity;0.0260728077998165!GO:0030132;clathrin coat of coated pit;0.0260765793646578!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0261043024123186!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0261066002696119!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0261066002696119!GO:0044262;cellular carbohydrate metabolic process;0.0261317112751824!GO:0043601;nuclear replisome;0.0264147987237423!GO:0030894;replisome;0.0264147987237423!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0268076796944731!GO:0007259;JAK-STAT cascade;0.0270607364367161!GO:0045926;negative regulation of growth;0.0272612308012878!GO:0008047;enzyme activator activity;0.0278878974253387!GO:0018193;peptidyl-amino acid modification;0.0281177154047287!GO:0030433;ER-associated protein catabolic process;0.0283654575608825!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0283654575608825!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0283979046871364!GO:0050811;GABA receptor binding;0.0286128340703341!GO:0005031;tumor necrosis factor receptor activity;0.0289218118216731!GO:0006740;NADPH regeneration;0.029164109964535!GO:0006098;pentose-phosphate shunt;0.029164109964535!GO:0000792;heterochromatin;0.0294084224447471!GO:0048002;antigen processing and presentation of peptide antigen;0.0303604540163367!GO:0043284;biopolymer biosynthetic process;0.0305278330535153!GO:0030833;regulation of actin filament polymerization;0.0307208655860638!GO:0006984;ER-nuclear signaling pathway;0.0309625299601373!GO:0050852;T cell receptor signaling pathway;0.0312123796875316!GO:0022884;macromolecule transmembrane transporter activity;0.0316573433250658!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0316573433250658!GO:0017134;fibroblast growth factor binding;0.0318056791350634!GO:0004197;cysteine-type endopeptidase activity;0.0318558878430312!GO:0032200;telomere organization and biogenesis;0.0324812817346993!GO:0000723;telomere maintenance;0.0324812817346993!GO:0000178;exosome (RNase complex);0.0326431073018841!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0326431073018841!GO:0046979;TAP2 binding;0.0328470991657434!GO:0046977;TAP binding;0.0328470991657434!GO:0046978;TAP1 binding;0.0328470991657434!GO:0042608;T cell receptor binding;0.0328470991657434!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0345000587405071!GO:0006635;fatty acid beta-oxidation;0.0347043483650467!GO:0050863;regulation of T cell activation;0.0351305253868404!GO:0009966;regulation of signal transduction;0.0354742319525409!GO:0006783;heme biosynthetic process;0.0361638603056225!GO:0000152;nuclear ubiquitin ligase complex;0.0361638603056225!GO:0006266;DNA ligation;0.0361638603056225!GO:0005083;small GTPase regulator activity;0.0363372008515388!GO:0030041;actin filament polymerization;0.0365188742738938!GO:0006144;purine base metabolic process;0.0365199464167947!GO:0005832;chaperonin-containing T-complex;0.0365339382570191!GO:0030258;lipid modification;0.0367207680755827!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0368173617009516!GO:0045061;thymic T cell selection;0.0368825503428643!GO:0022406;membrane docking;0.0368825503428643!GO:0048278;vesicle docking;0.0368825503428643!GO:0006378;mRNA polyadenylation;0.036902125604736!GO:0007034;vacuolar transport;0.0370835418156878!GO:0016569;covalent chromatin modification;0.0373276324853512!GO:0008276;protein methyltransferase activity;0.0376922923413515!GO:0004221;ubiquitin thiolesterase activity;0.0378976312971575!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0378976312971575!GO:0000738;DNA catabolic process, exonucleolytic;0.0379893290128052!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0380300414580361!GO:0006458;'de novo' protein folding;0.0381374955838291!GO:0051084;'de novo' posttranslational protein folding;0.0381374955838291!GO:0019058;viral infectious cycle;0.0385179004020239!GO:0048524;positive regulation of viral reproduction;0.0388460725012089!GO:0006376;mRNA splice site selection;0.0398876608138577!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0398876608138577!GO:0044450;microtubule organizing center part;0.0399724439843029!GO:0031647;regulation of protein stability;0.0400289042313713!GO:0016860;intramolecular oxidoreductase activity;0.0400519112792991!GO:0006013;mannose metabolic process;0.0403349904223471!GO:0042168;heme metabolic process;0.0405237975571097!GO:0005784;translocon complex;0.0409825282673395!GO:0030133;transport vesicle;0.0412339938823206!GO:0030119;AP-type membrane coat adaptor complex;0.04219724055177!GO:0000781;chromosome, telomeric region;0.0422626744008034!GO:0051452;cellular pH reduction;0.0426658963629572!GO:0051453;regulation of cellular pH;0.0426658963629572!GO:0045851;pH reduction;0.0426658963629572!GO:0000725;recombinational repair;0.0426658963629572!GO:0000724;double-strand break repair via homologous recombination;0.0426658963629572!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.042829950023118!GO:0006275;regulation of DNA replication;0.042829950023118!GO:0006672;ceramide metabolic process;0.043056006593542!GO:0008213;protein amino acid alkylation;0.0432793040171578!GO:0006479;protein amino acid methylation;0.0432793040171578!GO:0000910;cytokinesis;0.0439941355583093!GO:0000096;sulfur amino acid metabolic process;0.0441010933580129!GO:0000018;regulation of DNA recombination;0.0441806434159544!GO:0019976;interleukin-2 binding;0.0441806434159544!GO:0004911;interleukin-2 receptor activity;0.0441806434159544!GO:0043027;caspase inhibitor activity;0.0446085342595592!GO:0006904;vesicle docking during exocytosis;0.0448174799336807!GO:0030332;cyclin binding;0.0448405268722785!GO:0050178;phenylpyruvate tautomerase activity;0.0452307178205421!GO:0006470;protein amino acid dephosphorylation;0.045678712370554!GO:0006468;protein amino acid phosphorylation;0.0456886800098595!GO:0016408;C-acyltransferase activity;0.0458230976578377!GO:0005652;nuclear lamina;0.0458495999437187!GO:0003725;double-stranded RNA binding;0.0460668387588116!GO:0006270;DNA replication initiation;0.0460680649821879!GO:0004721;phosphoprotein phosphatase activity;0.0469712914466772!GO:0051219;phosphoprotein binding;0.0473233693673439!GO:0007346;regulation of progression through mitotic cell cycle;0.0475099240916917!GO:0031570;DNA integrity checkpoint;0.0475511911654065!GO:0030131;clathrin adaptor complex;0.0475679293851078!GO:0045309;protein phosphorylated amino acid binding;0.0477376720825551!GO:0051338;regulation of transferase activity;0.0478369454188074!GO:0045185;maintenance of protein localization;0.0483817617747148!GO:0001784;phosphotyrosine binding;0.0486357173155002!GO:0007040;lysosome organization and biogenesis;0.0486401248584397!GO:0003887;DNA-directed DNA polymerase activity;0.0496965867947433
 |sample_id=11917
 |sample_note=
@@ Line 75: / Line 99: @@
 |sample_tissue=blood
 |top_motifs=CDX1,2,4:3.11001094298;PAX4:2.24567056145;ZBTB16:2.06882886046;ELF1,2,4:1.99669613662;FOXP1:1.98069459248;IKZF2:1.97929463858;PAX3,7:1.83143189526;PITX1..3:1.81613952657;RUNX1..3:1.74351701807;NKX6-1,2:1.71357003498;TLX2:1.49197283798;POU1F1:1.43563262123;ETS1,2:1.39867365457;STAT1,3:1.2723543365;DMAP1_NCOR{1,2}_SMARC:1.27220492024;PDX1:1.15120933888;SPI1:1.14044712124;POU2F1..3:1.13756097294;TOPORS:1.07767323404;NKX3-1:1.02916555776;IRF1,2:1.01044144149;E2F1..5:0.992994841053;ELK1,4_GABP{A,B1}:0.979362537235;SPZ1:0.954752207834;PBX1:0.947806144289;NKX2-2,8:0.904170133495;RORA:0.87171974374;NKX2-1,4:0.845062640551;SPIB:0.838072080264;BREu{core}:0.742175412985;GATA6:0.710304527092;FOXO1,3,4:0.6554146712;YY1:0.646273417029;HOX{A6,A7,B6,B7}:0.630240929396;NANOG{mouse}:0.62289444935;TGIF1:0.605078344644;NFY{A,B,C}:0.562389491849;FOX{F1,F2,J1}:0.472325442893;ALX1:0.456495635592;BPTF:0.453554675956;AIRE:0.452055307798;FOX{I1,J2}:0.386005280518;LEF1_TCF7_TCF7L1,2:0.385954286243;FOX{D1,D2}:0.37008928713;FOXD3:0.336179469647;IRF7:0.328184768762;SOX5:0.3187559866;T:0.311811686534;RXRA_VDR{dimer}:0.25099675304;SNAI1..3:0.245135520067;OCT4_SOX2{dimer}:0.238137765252;CRX:0.198261457519;PAX6:0.193503691512;CREB1:0.180382742625;NFKB1_REL_RELA:0.180113713963;ZEB1:0.172584943493;MYOD1:0.136496045273;ATF5_CREB3:0.127950348461;MYB:0.109876270095;LMO2:0.0977499222588;STAT2,4,6:0.0890508075616;GFI1:0.0850977168369;POU3F1..4:0.0717969268294;NR5A1,2:0.061168449013;ATF6:0.0522310474888;FOXN1:0.0503205885551;NRF1:0.0453360708909;HAND1,2:0.0281572156595;PAX2:-0.00594804360111;FOXQ1:-0.0183270777757;HES1:-0.0445224668777;NR3C1:-0.0450826036895;FOXM1:-0.0595347419552;CUX2:-0.0622594499862;SREBF1,2:-0.0645757340713;HNF4A_NR2F1,2:-0.0859648393475;GCM1,2:-0.0893141070322;EVI1:-0.093912405077;ZNF143:-0.101732661089;AR:-0.109832898838;FOXA2:-0.126651266807;NFIL3:-0.159022292042;TFDP1:-0.223816588189;NFE2L1:-0.273335384181;DBP:-0.280221552958;ATF4:-0.290801805517;SOX{8,9,10}:-0.300820134186;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.318233387138;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.324735705239;AHR_ARNT_ARNT2:-0.328573746415;ZNF384:-0.334037220631;RFX2..5_RFXANK_RFXAP:-0.338792877308;STAT5{A,B}:-0.340714180584;HNF1A:-0.345182732721;HBP1_HMGB_SSRP1_UBTF:-0.345607848979;PAX8:-0.384956617103;SMAD1..7,9:-0.40304937948;NR1H4:-0.416563242358;JUN:-0.41757495625;GLI1..3:-0.424581128536;POU5F1:-0.43275589882;MYFfamily:-0.451892699804;RREB1:-0.458738065895;PRRX1,2:-0.461405448761;ATF2:-0.463838265069;ARID5B:-0.475603194238;NR6A1:-0.506771949522;HMX1:-0.527818714065;TP53:-0.557682912279;REST:-0.558234104763;TAL1_TCF{3,4,12}:-0.560134624293;NKX2-3_NKX2-5:-0.574494811374;NFATC1..3:-0.578242320309;ZNF148:-0.593035825082;SOX2:-0.59610098444;UFEwm:-0.599478695326;BACH2:-0.613319196495;CEBPA,B_DDIT3:-0.643153631689;SRF:-0.651002431067;EP300:-0.65704282654;FOXP3:-0.673996940863;ESR1:-0.681760756077;VSX1,2:-0.706351507603;ADNP_IRX_SIX_ZHX:-0.713487483384;ZNF238:-0.726934043441;PAX5:-0.727612733488;FOXL1:-0.745307415688;FOS_FOS{B,L1}_JUN{B,D}:-0.749233947189;TFAP4:-0.749442710679;CDC5L:-0.755637137949;ONECUT1,2:-0.763760493053;PPARG:-0.799562167712;NFE2:-0.812871405998;XCPE1{core}:-0.839655247377;MEF2{A,B,C,D}:-0.846061799344;HOXA9_MEIS1:-0.890922201911;MYBL2:-0.906169067591;EBF1:-0.914248311307;MED-1{core}:-0.932500425547;LHX3,4:-0.944473796622;ZFP161:-0.952750079969;HLF:-0.953157039253;FOSL2:-0.955523451731;MZF1:-0.971246562293;ALX4:-0.971955540351;TFCP2:-0.985014973194;RFX1:-0.985416416266;ZBTB6:-1.01330889874;EGR1..3:-1.01816939362;NFE2L2:-1.0301299113;NHLH1,2:-1.07361048123;PRDM1:-1.08179661201;SOX17:-1.0867782265;KLF4:-1.11585844216;ZNF423:-1.11960788867;bHLH_family:-1.12129077196;HIF1A:-1.12774722243;NANOG:-1.16110799894;TFAP2B:-1.16859003666;HIC1:-1.17519523581;POU6F1:-1.18198448797;HMGA1,2:-1.22265270572;GFI1B:-1.23314234608;GATA4:-1.24098725675;RBPJ:-1.24467086628;MTE{core}:-1.34840712545;NFIX:-1.36142140949;HOX{A4,D4}:-1.39938057426;MTF1:-1.40348774571;TEF:-1.42335028749;PATZ1:-1.44398686591;MAZ:-1.45261036449;TBX4,5:-1.4626081507;TBP:-1.47651277618;GZF1:-1.48479481773;GTF2I:-1.48957880873;GTF2A1,2:-1.50924049376;ESRRA:-1.52819434933;HSF1,2:-1.54115646063;MAFB:-1.58442779884;TFAP2{A,C}:-1.58581815647;PAX1,9:-1.60029227199;TEAD1:-1.63079560987;HOX{A5,B5}:-1.65898643318;RXR{A,B,G}:-1.6650163034;EN1,2:-1.73255511564;XBP1:-1.74976470712;ZIC1..3:-1.80225854276;SP1:-1.84249074056;IKZF1:-1.84738015723;NKX3-2:-1.93512863669;TLX1..3_NFIC{dimer}:-2.00325198928
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11917-125G9;search_select_hide=table117:FF:11917-125G9
 }}

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FF:11917-125G9: Difference between revisions

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Latest revision as of 18:29, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0