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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005190
|accession_numbers=CAGE;DRX008386;DRR009258;DRZ000683;DRZ002068;DRZ012033;DRZ013418
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000197,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000075,CL:0000066,CL:0002371,CL:0000221,CL:0000710,CL:0000220,CL:0000004,CL:0000255,CL:0002077,CL:0000098,CL:0002167,CL:0000133
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0200002
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr14:37131058..37131139,+!p1@PAX9!1.99!96.36!PAX9;;chr7:19157248..19157268,-!p1@TWIST1!1.90!208.80!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.71!56.14!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.68!75.70!TFAP2A;;chr14:61116183..61116208,-!p1@SIX1!1.57!132.94!SIX1;;chr2:223163706..223163730,-!p1@PAX3!1.56!35.01!PAX3;;chr8:99956662..99956684,+!p1@OSR2!1.49!44.95!OSR2;;chr9:132427972..132428056,+!p1@PRRX2!1.49!38.95!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.48!29.33!PRRX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.44!33.59!TFAP2C;;chr6:10415276..10415341,-!p2@TFAP2A!1.39!28.54!TFAP2A;;chr6:50789717..50789729,+!p4@TFAP2B!1.39!23.34!TFAP2B;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.28!PRRX1;;chr10:28034739..28034756,-!p1@MKX!1.35!21.61!MKX;;chr6:50786591..50786614,+!p1@TFAP2B!1.34!20.82!TFAP2B;;chr15:57511609..57511651,+!p2@TCF12!1.32!32.96!TCF12;;chr11:46299199..46299233,+!p1@CREB3L1!1.26!87.05!CREB3L1;;chr7:44143925..44143970,+!p1@AEBP1!1.22!339.06!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!1.17!25.23!NR2F2;;chr7:44143978..44143989,+!p2@AEBP1!1.17!25.07!AEBP1;;chr6:10412392..10412409,-!p4@TFAP2A!1.17!15.77!TFAP2A;;chr12:85673977..85674015,+!p1@ALX1!1.17!13.88!ALX1;;chr2:239756671..239756732,+!p1@TWIST2!1.15!41.79!TWIST2;;chr3:128206762..128206781,-!p2@GATA2!1.13!77.27!GATA2;;chr1:170633262..170633285,+!p3@PRRX1!1.13!14.35!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.13!12.62!PRRX1;;chr6:126240380..126240430,+!p2@NCOA7!1.12!31.54!NCOA7;;chr3:141121847..141121868,+!p5@ZBTB38!1.12!18.61!ZBTB38;;chr2:46612334..46612349,+!p6@EPAS1!1.11!15.77!EPAS1;;chr3:128212033..128212051,-!p1@GATA2!1.10!11.67!GATA2;;chr12:85674018..85674039,+!p3@ALX1!1.10!11.51!ALX1;;chr15:42749722..42749739,-!p2@ZFP106!1.08!19.71!ZFP106;;chr2:46524537..46524553,+!p1@EPAS1!1.07!1052.35!EPAS1;;chr15:96873984..96873999,+!p3@NR2F2!1.07!79.32!NR2F2;;chr6:10412576..10412599,-!p5@TFAP2A!1.07!10.88!TFAP2A;;chr14:37126765..37126799,+!p2@PAX9!1.07!10.88!PAX9;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.57!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!1.05!12.93!AEBP1;;chr3:157823517..157823562,-!p1@SHOX2!1.05!10.88!SHOX2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.09!KDM5D;;chr11:46299539..46299620,+!p2@CREB3L1!1.03!16.56!CREB3L1;;chr6:1389789..1389821,+!p1@FOXF2!1.03!13.56!FOXF2;;chr11:44331576..44331650,-!p1@ALX4!1.03!9.62!ALX4;;chr12:85673868..85673881,+!p2@ALX1!1.01!9.15!ALX1;;chr5:321810..321877,+!p1@AHRR!1.00!29.33!AHRR;;chr6:126240442..126240459,+!p4@NCOA7!0.98!11.04!NCOA7;;chr16:86544113..86544145,+!p1@FOXF1!0.98!10.72!FOXF1;;chr7:19157043..19157088,-!p2@TWIST1!0.97!21.45!TWIST1;;chr11:12696071..12696086,+!p3@TEAD1!0.96!10.72!TEAD1;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.04!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.95!13.88!TWIST2;;chr12:115121962..115121987,-!p1@TBX3!0.93!64.97!TBX3;;chr12:104531823..104531849,-!p5@NFYB!0.93!16.09!NFYB;;chr8:93074803..93074845,-!p1@RUNX1T1!0.92!7.41!RUNX1T1;;chr1:110613238..110613272,-!p1@ALX3!0.92!7.41!ALX3;;chr10:63809013..63809041,+!p3@ARID5B!0.90!40.53!ARID5B;;chr8:72756667..72756736,-!p2@MSC!0.90!11.20!MSC;;chr14:95236440..95236465,-!p1@GSC!0.89!6.78!GSC;;chr1:170633058..170633084,+!p5@PRRX1!0.88!6.62!PRRX1;;chr10:63853436..63853442,+!p4@ARID5B!0.87!36.27!ARID5B;;chr2:8822176..8822196,+!p1@ID2!0.86!934.23!ID2;;chr15:96874012..96874042,+!p2@NR2F2!0.85!57.88!NR2F2;;chr10:114710218..114710229,+!p4@TCF7L2!0.83!11.83!TCF7L2;;chr14:61116168..61116180,-!p2@SIX1!0.83!6.62!SIX1;;chr1:170632959..170632987,+!p4@PRRX1!0.83!6.31!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.82!25.55!ZFHX4;;chr16:31076332..31076388,-!p3@ZNF668!0.82!5.68!ZNF668;;chr14:24837368..24837401,+!p1@NFATC4!0.81!13.56!NFATC4;;chr12:80085061..80085119,-!p6@PAWR!0.81!9.15!PAWR;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.52!ZFY;;chr12:115122318..115122331,-!p2@TBX3!0.79!5.20!TBX3;;chr6:50786547..50786564,+!p3@TFAP2B!0.79!5.20!TFAP2B;;chr14:75894714..75894733,+!p1@JDP2!0.78!155.34!JDP2;;chr1:110613276..110613299,-!p2@ALX3!0.78!5.05!ALX3;;chr3:141121820..141121838,+!p9@ZBTB38!0.78!5.05!ZBTB38;;chr5:139492456..139492489,+!p7@PURA!0.78!5.05!PURA;;chr6:50786571..50786590,+!p2@TFAP2B!0.77!4.89!TFAP2B;;chrY:21906761..21906810,-!p2@KDM5D!0.77!4.89!KDM5D;;chr10:114710098..114710130,+!p2@TCF7L2!0.76!38.95!TCF7L2;;chr15:96874927..96874938,+!p8@NR2F2!0.76!10.88!NR2F2;;chr1:170632477..170632506,+!p6@PRRX1!0.76!4.73!PRRX1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.75!51.41!GLIS2;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.10!NFIX;;chr15:96869222..96869251,+!p18@NR2F2!0.75!5.52!NR2F2;;chr15:96875041..96875052,+!p17@NR2F2!0.74!6.78!NR2F2;;chr15:96876966..96877017,+!p12@NR2F2!0.74!6.78!NR2F2;;chr10:63809106..63809127,+!p1@ARID5B!0.73!66.87!ARID5B;;chr16:86600426..86600441,+!p1@FOXC2!0.72!11.35!FOXC2;;chr11:12696002..12696022,+!p2@TEAD1!0.72!11.20!TEAD1;;chr8:72756063..72756125,-!p1@MSC!0.72!9.30!MSC;;chr1:170632115..170632136,+!p9@PRRX1!0.72!4.26!PRRX1;;chr2:208030647..208030689,-!p1@KLF7!0.71!38.64!KLF7;;chr8:49833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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002167
|ffid_belonging_in_development=CL:0000133,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor3.CNhs13818.11935-125I9.hg38.nobarcode.ctss.bed.gz
|id=FF:11935-125I9
|id=FF:11935-125I9
|is_a=FF:0000002;;FF:0000210;;FF:0200002
|is_a=FF:0000002;;FF:0000210;;FF:0200002
|is_obsolete=
|library_id=CNhs13818
|library_id_phase_based=2:CNhs13818
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11935
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11935
|name=Olfactory epithelial cells, donor3
|name=Olfactory epithelial cells, donor3
|namespace=
|namespace=
Line 44: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
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Line 57: Line 79:
|rna_weight_ug=10.83
|rna_weight_ug=10.83
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|sample_age=61
|sample_category=primary cells
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|sample_cell_catalog=
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|sample_cell_line=
Line 77: Line 100:
|sample_tissue=ANATOMICAL SYSTEM
|sample_tissue=ANATOMICAL SYSTEM
|top_motifs=EVI1:2.89010064823;TAL1_TCF{3,4,12}:2.58998313741;NKX2-2,8:2.4419579415;HMGA1,2:2.37629333842;FOXL1:2.29946622156;ALX4:2.13945215053;AIRE:2.02034428938;UFEwm:1.87791472852;GLI1..3:1.77042560316;NKX3-1:1.6466353304;LHX3,4:1.59390546979;HES1:1.5699065107;TEAD1:1.48327348405;NR3C1:1.47430431108;KLF4:1.45640885299;ZNF384:1.44815383243;PRDM1:1.40342675064;MYBL2:1.36883382808;ESR1:1.25507661242;HIF1A:1.19352844026;FOXD3:1.14307712854;RXR{A,B,G}:1.12969066454;GZF1:1.12458666725;NR6A1:1.11817354225;GATA4:1.11624672553;TP53:0.970211055719;SRF:0.96105789287;HOX{A4,D4}:0.92217623692;NKX6-1,2:0.916598203604;PAX1,9:0.909325514821;ZBTB16:0.86272750281;PITX1..3:0.779081439822;ADNP_IRX_SIX_ZHX:0.741587776342;BPTF:0.736039009805;ZIC1..3:0.730623690106;CDX1,2,4:0.728754145813;RXRA_VDR{dimer}:0.726402721606;FOXP1:0.709374211395;TOPORS:0.701492392466;TFAP2{A,C}:0.664689589305;MAZ:0.65851485479;TLX1..3_NFIC{dimer}:0.644745110963;HMX1:0.641959883207;MAFB:0.631181665611;NKX2-1,4:0.601785702945;NFE2L1:0.59856115797;FOX{I1,J2}:0.586416362774;ZNF423:0.582014009566;PPARG:0.56682238946;SOX5:0.529288179003;GTF2I:0.527641583769;HSF1,2:0.519229979528;TFCP2:0.506127729038;NKX3-2:0.505769595002;PATZ1:0.502302028085;TEF:0.49858252655;HOX{A6,A7,B6,B7}:0.494193837593;IRF1,2:0.488131354187;NANOG{mouse}:0.453892353117;ZNF238:0.437883470804;XBP1:0.437646422371;NFATC1..3:0.402333092091;HOX{A5,B5}:0.399950663198;HAND1,2:0.397050744473;ATF6:0.393997782733;GTF2A1,2:0.385642626383;FOXO1,3,4:0.376508722597;EBF1:0.357613651631;CDC5L:0.349639961176;FOXA2:0.349024985895;DMAP1_NCOR{1,2}_SMARC:0.347944509682;MTE{core}:0.341646858343;TFAP4:0.313988467382;IKZF1:0.31286204446;TFAP2B:0.311174690727;XCPE1{core}:0.304202103155;SPZ1:0.281005573819;SOX17:0.259645496468;HIC1:0.249634185753;ZBTB6:0.24410882063;MTF1:0.23704191408;POU5F1:0.203256233376;TBX4,5:0.19209105348;EN1,2:0.161847521505;HLF:0.15640229351;RREB1:0.132782288859;NR1H4:0.128077070604;PDX1:0.0975049291733;ARID5B:0.0915374400964;ONECUT1,2:0.0789804411157;T:0.0709924501442;PAX5:0.0576697524295;AHR_ARNT_ARNT2:0.0560201496348;ZFP161:0.0515397500716;IKZF2:0.0513854225698;SMAD1..7,9:-0.021273924667;PAX4:-0.0317904553041;POU3F1..4:-0.0469277342682;FOX{D1,D2}:-0.0784373578217;NFIX:-0.0904783369248;YY1:-0.0913933775823;BACH2:-0.0913985231343;MZF1:-0.100515756389;DBP:-0.124022621191;NFE2L2:-0.125808658911;GCM1,2:-0.130212491002;CEBPA,B_DDIT3:-0.167799144218;ZNF143:-0.177148595661;ZNF148:-0.17739506542;FOXP3:-0.187060937342;SP1:-0.189884103669;GFI1B:-0.207292877105;NKX2-3_NKX2-5:-0.210167919192;MYFfamily:-0.217020895237;NFE2:-0.225896184871;MEF2{A,B,C,D}:-0.236697144138;TBP:-0.253338184174;STAT5{A,B}:-0.256880890873;MYB:-0.260142908348;ELK1,4_GABP{A,B1}:-0.288152627031;RBPJ:-0.301528165049;PAX6:-0.306182447584;TLX2:-0.32142100128;MED-1{core}:-0.334683145107;RFX1:-0.352408869219;IRF7:-0.35273939955;bHLH_family:-0.358452888361;REST:-0.358587532624;EGR1..3:-0.359351512104;FOS_FOS{B,L1}_JUN{B,D}:-0.360145021554;SNAI1..3:-0.370868465863;SREBF1,2:-0.378522531153;PAX2:-0.382115315952;NRF1:-0.383243649389;ATF2:-0.384115992904;STAT2,4,6:-0.387547611185;FOSL2:-0.425059551755;NFKB1_REL_RELA:-0.426359584271;HNF1A:-0.426372370494;FOXN1:-0.429437524048;HNF4A_NR2F1,2:-0.440841658327;PAX8:-0.455862930742;NHLH1,2:-0.494938533759;SOX2:-0.498452578035;FOXM1:-0.501017597336;POU6F1:-0.502978293809;AR:-0.503788193967;LMO2:-0.517053432904;PRRX1,2:-0.525844350876;ALX1:-0.576946478483;RUNX1..3:-0.580035868505;NFIL3:-0.597301613116;SPI1:-0.619946494387;OCT4_SOX2{dimer}:-0.624817728269;BREu{core}:-0.643497984288;RFX2..5_RFXANK_RFXAP:-0.667891238489;SPIB:-0.671308643545;ETS1,2:-0.680323384281;POU1F1:-0.683740979718;ATF4:-0.689891829133;ELF1,2,4:-0.703726824213;GFI1:-0.728301387702;CREB1:-0.754200655369;STAT1,3:-0.756746656255;LEF1_TCF7_TCF7L1,2:-0.777509473309;ZEB1:-0.79204459728;NR5A1,2:-0.792872561995;CUX2:-0.796091907124;CRX:-0.815593464944;TFDP1:-0.827657284537;E2F1..5:-0.840171033648;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.868809654826;ATF5_CREB3:-0.884683882039;TGIF1:-0.890537213995;POU2F1..3:-0.964254795145;PAX3,7:-1.00521333235;EP300:-1.01648577459;FOXQ1:-1.02120560387;FOX{F1,F2,J1}:-1.06846975139;MYOD1:-1.07480100742;HBP1_HMGB_SSRP1_UBTF:-1.11112616068;JUN:-1.19186720683;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21091672983;NFY{A,B,C}:-1.27746029599;NANOG:-1.28565925108;RORA:-1.30606533352;GATA6:-1.3465707098;HOXA9_MEIS1:-1.38430207561;PBX1:-1.4735313878;ESRRA:-1.49801059342;SOX{8,9,10}:-1.52596758732;VSX1,2:-1.58749889599
|top_motifs=EVI1:2.89010064823;TAL1_TCF{3,4,12}:2.58998313741;NKX2-2,8:2.4419579415;HMGA1,2:2.37629333842;FOXL1:2.29946622156;ALX4:2.13945215053;AIRE:2.02034428938;UFEwm:1.87791472852;GLI1..3:1.77042560316;NKX3-1:1.6466353304;LHX3,4:1.59390546979;HES1:1.5699065107;TEAD1:1.48327348405;NR3C1:1.47430431108;KLF4:1.45640885299;ZNF384:1.44815383243;PRDM1:1.40342675064;MYBL2:1.36883382808;ESR1:1.25507661242;HIF1A:1.19352844026;FOXD3:1.14307712854;RXR{A,B,G}:1.12969066454;GZF1:1.12458666725;NR6A1:1.11817354225;GATA4:1.11624672553;TP53:0.970211055719;SRF:0.96105789287;HOX{A4,D4}:0.92217623692;NKX6-1,2:0.916598203604;PAX1,9:0.909325514821;ZBTB16:0.86272750281;PITX1..3:0.779081439822;ADNP_IRX_SIX_ZHX:0.741587776342;BPTF:0.736039009805;ZIC1..3:0.730623690106;CDX1,2,4:0.728754145813;RXRA_VDR{dimer}:0.726402721606;FOXP1:0.709374211395;TOPORS:0.701492392466;TFAP2{A,C}:0.664689589305;MAZ:0.65851485479;TLX1..3_NFIC{dimer}:0.644745110963;HMX1:0.641959883207;MAFB:0.631181665611;NKX2-1,4:0.601785702945;NFE2L1:0.59856115797;FOX{I1,J2}:0.586416362774;ZNF423:0.582014009566;PPARG:0.56682238946;SOX5:0.529288179003;GTF2I:0.527641583769;HSF1,2:0.519229979528;TFCP2:0.506127729038;NKX3-2:0.505769595002;PATZ1:0.502302028085;TEF:0.49858252655;HOX{A6,A7,B6,B7}:0.494193837593;IRF1,2:0.488131354187;NANOG{mouse}:0.453892353117;ZNF238:0.437883470804;XBP1:0.437646422371;NFATC1..3:0.402333092091;HOX{A5,B5}:0.399950663198;HAND1,2:0.397050744473;ATF6:0.393997782733;GTF2A1,2:0.385642626383;FOXO1,3,4:0.376508722597;EBF1:0.357613651631;CDC5L:0.349639961176;FOXA2:0.349024985895;DMAP1_NCOR{1,2}_SMARC:0.347944509682;MTE{core}:0.341646858343;TFAP4:0.313988467382;IKZF1:0.31286204446;TFAP2B:0.311174690727;XCPE1{core}:0.304202103155;SPZ1:0.281005573819;SOX17:0.259645496468;HIC1:0.249634185753;ZBTB6:0.24410882063;MTF1:0.23704191408;POU5F1:0.203256233376;TBX4,5:0.19209105348;EN1,2:0.161847521505;HLF:0.15640229351;RREB1:0.132782288859;NR1H4:0.128077070604;PDX1:0.0975049291733;ARID5B:0.0915374400964;ONECUT1,2:0.0789804411157;T:0.0709924501442;PAX5:0.0576697524295;AHR_ARNT_ARNT2:0.0560201496348;ZFP161:0.0515397500716;IKZF2:0.0513854225698;SMAD1..7,9:-0.021273924667;PAX4:-0.0317904553041;POU3F1..4:-0.0469277342682;FOX{D1,D2}:-0.0784373578217;NFIX:-0.0904783369248;YY1:-0.0913933775823;BACH2:-0.0913985231343;MZF1:-0.100515756389;DBP:-0.124022621191;NFE2L2:-0.125808658911;GCM1,2:-0.130212491002;CEBPA,B_DDIT3:-0.167799144218;ZNF143:-0.177148595661;ZNF148:-0.17739506542;FOXP3:-0.187060937342;SP1:-0.189884103669;GFI1B:-0.207292877105;NKX2-3_NKX2-5:-0.210167919192;MYFfamily:-0.217020895237;NFE2:-0.225896184871;MEF2{A,B,C,D}:-0.236697144138;TBP:-0.253338184174;STAT5{A,B}:-0.256880890873;MYB:-0.260142908348;ELK1,4_GABP{A,B1}:-0.288152627031;RBPJ:-0.301528165049;PAX6:-0.306182447584;TLX2:-0.32142100128;MED-1{core}:-0.334683145107;RFX1:-0.352408869219;IRF7:-0.35273939955;bHLH_family:-0.358452888361;REST:-0.358587532624;EGR1..3:-0.359351512104;FOS_FOS{B,L1}_JUN{B,D}:-0.360145021554;SNAI1..3:-0.370868465863;SREBF1,2:-0.378522531153;PAX2:-0.382115315952;NRF1:-0.383243649389;ATF2:-0.384115992904;STAT2,4,6:-0.387547611185;FOSL2:-0.425059551755;NFKB1_REL_RELA:-0.426359584271;HNF1A:-0.426372370494;FOXN1:-0.429437524048;HNF4A_NR2F1,2:-0.440841658327;PAX8:-0.455862930742;NHLH1,2:-0.494938533759;SOX2:-0.498452578035;FOXM1:-0.501017597336;POU6F1:-0.502978293809;AR:-0.503788193967;LMO2:-0.517053432904;PRRX1,2:-0.525844350876;ALX1:-0.576946478483;RUNX1..3:-0.580035868505;NFIL3:-0.597301613116;SPI1:-0.619946494387;OCT4_SOX2{dimer}:-0.624817728269;BREu{core}:-0.643497984288;RFX2..5_RFXANK_RFXAP:-0.667891238489;SPIB:-0.671308643545;ETS1,2:-0.680323384281;POU1F1:-0.683740979718;ATF4:-0.689891829133;ELF1,2,4:-0.703726824213;GFI1:-0.728301387702;CREB1:-0.754200655369;STAT1,3:-0.756746656255;LEF1_TCF7_TCF7L1,2:-0.777509473309;ZEB1:-0.79204459728;NR5A1,2:-0.792872561995;CUX2:-0.796091907124;CRX:-0.815593464944;TFDP1:-0.827657284537;E2F1..5:-0.840171033648;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.868809654826;ATF5_CREB3:-0.884683882039;TGIF1:-0.890537213995;POU2F1..3:-0.964254795145;PAX3,7:-1.00521333235;EP300:-1.01648577459;FOXQ1:-1.02120560387;FOX{F1,F2,J1}:-1.06846975139;MYOD1:-1.07480100742;HBP1_HMGB_SSRP1_UBTF:-1.11112616068;JUN:-1.19186720683;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.21091672983;NFY{A,B,C}:-1.27746029599;NANOG:-1.28565925108;RORA:-1.30606533352;GATA6:-1.3465707098;HOXA9_MEIS1:-1.38430207561;PBX1:-1.4735313878;ESRRA:-1.49801059342;SOX{8,9,10}:-1.52596758732;VSX1,2:-1.58749889599
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11935-125I9;search_select_hide=table117:FF:11935-125I9
}}
}}

Latest revision as of 18:30, 4 June 2020

Name:Olfactory epithelial cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13818
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexmale
age61
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005190
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13818 CAGE DRX008386 DRR009258
Accession ID Hg19

Library idBAMCTSS
CNhs13818 DRZ000683 DRZ002068
Accession ID Hg38

Library idBAMCTSS
CNhs13818 DRZ012033 DRZ013418
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0103
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.198
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.212
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.128
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0941
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.252
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0875
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.113
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.119
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.457
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.651
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0636
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.74
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.323
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.533
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.312
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.252
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.119
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.941
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.484
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.119
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.354
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.051
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.00634
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.933
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13818

Jaspar motifP-value
MA0002.20.0155
MA0003.10.535
MA0004.10.134
MA0006.10.338
MA0007.10.902
MA0009.10.635
MA0014.10.427
MA0017.10.097
MA0018.21.13062e-6
MA0019.10.0797
MA0024.11.4876e-5
MA0025.15.88859e-4
MA0027.10.831
MA0028.10.0682
MA0029.10.585
MA0030.10.0084
MA0031.10.0504
MA0035.20.00291
MA0038.10.0256
MA0039.20.0127
MA0040.10.394
MA0041.10.235
MA0042.10.766
MA0043.13.36334e-5
MA0046.10.0567
MA0047.20.134
MA0048.10.00167
MA0050.10.933
MA0051.10.596
MA0052.10.0189
MA0055.10.451
MA0057.10.103
MA0058.10.00543
MA0059.10.729
MA0060.11.21497e-15
MA0061.10.088
MA0062.21.36147e-7
MA0065.20.802
MA0066.10.491
MA0067.10.00508
MA0068.10.989
MA0069.10.201
MA0070.10.551
MA0071.10.898
MA0072.10.161
MA0073.10.216
MA0074.10.354
MA0076.10.00232
MA0077.10.852
MA0078.10.986
MA0079.20.184
MA0080.28.947e-9
MA0081.10.00163
MA0083.10.0441
MA0084.10.1
MA0087.10.842
MA0088.10.658
MA0090.11.19193e-5
MA0091.10.0926
MA0092.10.0855
MA0093.10.0522
MA0099.27.04566e-6
MA0100.10.286
MA0101.10.00275
MA0102.20.596
MA0103.10.103
MA0104.20.0206
MA0105.10.529
MA0106.10.0417
MA0107.10.00621
MA0108.20.0279
MA0111.10.86
MA0112.20.00959
MA0113.10.398
MA0114.10.259
MA0115.10.0981
MA0116.10.329
MA0117.10.0328
MA0119.10.00349
MA0122.10.149
MA0124.10.612
MA0125.10.493
MA0131.10.61
MA0135.10.109
MA0136.17.34585e-12
MA0137.20.0688
MA0138.20.677
MA0139.10.733
MA0140.10.00243
MA0141.10.885
MA0142.10.286
MA0143.10.731
MA0144.10.872
MA0145.10.747
MA0146.10.454
MA0147.10.123
MA0148.10.186
MA0149.10.367
MA0150.10.00764
MA0152.10.0296
MA0153.10.146
MA0154.10.964
MA0155.10.523
MA0156.12.83992e-10
MA0157.10.0938
MA0159.10.643
MA0160.10.0289
MA0162.10.0113
MA0163.10.00974
MA0164.10.849
MA0258.10.243
MA0259.10.408



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13818

Novel motifP-value
10.891
100.157
1000.54
1010.78
1020.0841
1030.779
1040.867
1050.175
1060.152
1070.014
1080.263
1090.399
110.458
1100.433
1110.902
1120.471
1130.787
1140.136
1150.322
1160.0275
1170.362
1180.922
1190.242
120.211
1200.434
1210.487
1220.0795
1230.739
1240.31
1250.519
1260.392
1270.959
1280.394
1290.343
130.856
1300.188
1310.552
1320.0637
1330.96
1340.655
1350.846
1360.945
1370.121
1380.857
1390.976
140.446
1400.509
1410.182
1420.318
1430.418
1440.608
1450.366
1460.178
1470.116
1480.658
1490.108
150.376
1500.342
1510.88
1520.0583
1530.511
1540.713
1550.103
1560.329
1570.476
1580.0452
1590.991
160.022
1600.202
1610.803
1620.458
1630.979
1640.0045
1650.731
1660.0412
1670.722
1680.701
1690.0103
170.593
180.559
190.00429
20.521
200.643
210.0512
220.615
230.596
240.243
250.461
260.125
270.889
280.612
290.743
30.266
300.764
310.578
329.21153e-23
330.926
340.995
350.984
360.539
370.0449
380.376
390.373
40.297
400.917
410.351
420.826
430.644
440.497
450.71
460.571
470.936
480.752
490.91
50.891
500.611
510.734
520.84
530.767
540.29
550.0434
560.894
570.315
580.558
590.252
60.522
600.812
610.681
620.559
630.194
640.893
650.691
660.0515
670.791
680.483
690.568
70.391
700.0427
710.212
720.346
730.0257
740.408
750.663
760.146
770.0868
780.76
791.42552e-4
80.116
800.0572
810.883
820.00562
830.472
840.639
850.194
860.807
870.851
880.121
890.293
90.687
900.936
910.965
920.0719
930.518
940.204
950.682
960.654
970.737
980.216
990.00131



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13818


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0200002 (olfactory epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

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