FF:11936-126A1: Difference between revisions

Latest revision as of 18:30, 4 June 2020

Name:	Olfactory epithelial cells, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs13819
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ANATOMICAL SYSTEM
dev stage	NA
sex	male
age	64
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004726

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13819		CAGE		DRX008387		DRR009259

Accession ID Hg19

Library id		BAM		CTSS
CNhs13819		DRZ000684		DRZ002069

Accession ID Hg38

Library id		BAM		CTSS
CNhs13819		DRZ012034		DRZ013419

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0577
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.05
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.918
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.287
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0614
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.165
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.26
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0263
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0126
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.131
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.029
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.145
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.503
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0481
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.777
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.287
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.459
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.112
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.216
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.131
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.872
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.3
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.165
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.261
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.746
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.836
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13819

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0124
MA0003.1	MA0003.1	0.78
MA0004.1	MA0004.1	0.0276
MA0006.1	MA0006.1	0.853
MA0007.1	MA0007.1	0.396
MA0009.1	MA0009.1	0.134
MA0014.1	MA0014.1	0.186
MA0017.1	MA0017.1	0.0665
MA0018.2	MA0018.2	1.52805e-5
MA0019.1	MA0019.1	0.238
MA0024.1	MA0024.1	0.0147
MA0025.1	MA0025.1	0.0529
MA0027.1	MA0027.1	0.477
MA0028.1	MA0028.1	6.78067e-5
MA0029.1	MA0029.1	0.338
MA0030.1	MA0030.1	0.0311
MA0031.1	MA0031.1	0.0357
MA0035.2	MA0035.2	0.00391
MA0038.1	MA0038.1	0.03
MA0039.2	MA0039.2	0.00615
MA0040.1	MA0040.1	0.761
MA0041.1	MA0041.1	0.958
MA0042.1	MA0042.1	0.689
MA0043.1	MA0043.1	1.70608e-4
MA0046.1	MA0046.1	0.184
MA0047.2	MA0047.2	0.185
MA0048.1	MA0048.1	0.022
MA0050.1	MA0050.1	0.945
MA0051.1	MA0051.1	0.393
MA0052.1	MA0052.1	0.0878
MA0055.1	MA0055.1	0.592
MA0057.1	MA0057.1	0.255
MA0058.1	MA0058.1	1.69453e-4
MA0059.1	MA0059.1	0.0988
MA0060.1	MA0060.1	1.29544e-9
MA0061.1	MA0061.1	0.0223
MA0062.2	MA0062.2	3.19274e-15
MA0065.2	MA0065.2	0.0557
MA0066.1	MA0066.1	0.942
MA0067.1	MA0067.1	8.5233e-5
MA0068.1	MA0068.1	0.534
MA0069.1	MA0069.1	0.0676
MA0070.1	MA0070.1	0.475
MA0071.1	MA0071.1	0.47
MA0072.1	MA0072.1	0.107
MA0073.1	MA0073.1	0.252
MA0074.1	MA0074.1	0.514
MA0076.1	MA0076.1	9.05675e-7
MA0077.1	MA0077.1	0.627
MA0078.1	MA0078.1	0.821
MA0079.2	MA0079.2	0.477
MA0080.2	MA0080.2	1.35206e-9
MA0081.1	MA0081.1	3.68335e-4
MA0083.1	MA0083.1	9.67047e-5
MA0084.1	MA0084.1	0.0563
MA0087.1	MA0087.1	0.804
MA0088.1	MA0088.1	0.19
MA0090.1	MA0090.1	7.80737e-8
MA0091.1	MA0091.1	0.0588
MA0092.1	MA0092.1	0.122
MA0093.1	MA0093.1	0.011
MA0099.2	MA0099.2	1.35566e-4
MA0100.1	MA0100.1	0.45
MA0101.1	MA0101.1	0.0102
MA0102.2	MA0102.2	0.631
MA0103.1	MA0103.1	0.00543
MA0104.2	MA0104.2	0.00133
MA0105.1	MA0105.1	0.00285
MA0106.1	MA0106.1	0.0991
MA0107.1	MA0107.1	0.0333
MA0108.2	MA0108.2	0.772
MA0111.1	MA0111.1	0.212
MA0112.2	MA0112.2	0.973
MA0113.1	MA0113.1	0.768
MA0114.1	MA0114.1	0.0437
MA0115.1	MA0115.1	0.0453
MA0116.1	MA0116.1	0.0433
MA0117.1	MA0117.1	0.00597
MA0119.1	MA0119.1	0.00718
MA0122.1	MA0122.1	0.451
MA0124.1	MA0124.1	0.627
MA0125.1	MA0125.1	0.946
MA0131.1	MA0131.1	0.947
MA0135.1	MA0135.1	0.6
MA0136.1	MA0136.1	5.96202e-14
MA0137.2	MA0137.2	0.231
MA0138.2	MA0138.2	0.882
MA0139.1	MA0139.1	0.437
MA0140.1	MA0140.1	0.0176
MA0141.1	MA0141.1	0.18
MA0142.1	MA0142.1	0.521
MA0143.1	MA0143.1	0.806
MA0144.1	MA0144.1	0.645
MA0145.1	MA0145.1	0.442
MA0146.1	MA0146.1	0.761
MA0147.1	MA0147.1	0.0167
MA0148.1	MA0148.1	0.187
MA0149.1	MA0149.1	0.795
MA0150.1	MA0150.1	0.00345
MA0152.1	MA0152.1	0.0189
MA0153.1	MA0153.1	0.445
MA0154.1	MA0154.1	0.0707
MA0155.1	MA0155.1	0.623
MA0156.1	MA0156.1	9.75483e-11
MA0157.1	MA0157.1	0.158
MA0159.1	MA0159.1	0.26
MA0160.1	MA0160.1	0.00504
MA0162.1	MA0162.1	0.108
MA0163.1	MA0163.1	0.617
MA0164.1	MA0164.1	0.726
MA0258.1	MA0258.1	0.539
MA0259.1	MA0259.1	0.695

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13819

Novel motif	Logo	P-value
1	1	0.262
10	10	0.877
100	100	0.575
101	101	0.629
102	102	0.0208
103	103	0.552
104	104	0.801
105	105	0.177
106	106	0.919
107	107	0.0825
108	108	0.694
109	109	0.703
11	11	0.623
110	110	0.758
111	111	0.398
112	112	0.854
113	113	0.352
114	114	0.734
115	115	0.343
116	116	0.174
117	117	0.491
118	118	0.659
119	119	0.612
12	12	0.154
120	120	0.971
121	121	0.493
122	122	0.0997
123	123	0.237
124	124	0.344
125	125	0.518
126	126	0.0937
127	127	0.747
128	128	0.888
129	129	0.539
13	13	0.0732
130	130	0.814
131	131	0.768
132	132	0.0738
133	133	0.967
134	134	0.909
135	135	0.98
136	136	0.615
137	137	0.138
138	138	0.945
139	139	0.287
14	14	0.463
140	140	0.407
141	141	0.0342
142	142	0.534
143	143	0.419
144	144	0.996
145	145	0.288
146	146	0.328
147	147	0.1
148	148	0.524
149	149	0.119
15	15	0.149
150	150	0.684
151	151	0.646
152	152	0.425
153	153	0.451
154	154	0.898
155	155	0.113
156	156	0.297
157	157	0.151
158	158	0.0316
159	159	0.927
16	16	0.322
160	160	0.422
161	161	0.897
162	162	0.56
163	163	0.257
164	164	0.136
165	165	0.483
166	166	0.00165
167	167	0.548
168	168	0.304
169	169	0.169
17	17	0.769
18	18	0.758
19	19	0.0123
2	2	0.632
20	20	0.84
21	21	0.306
22	22	0.699
23	23	0.299
24	24	0.139
25	25	0.26
26	26	0.644
27	27	0.924
28	28	0.413
29	29	0.668
3	3	0.833
30	30	0.375
31	31	0.645
32	32	2.13357e-15
33	33	0.401
34	34	0.789
35	35	0.428
36	36	0.0692
37	37	0.802
38	38	0.281
39	39	0.305
4	4	0.209
40	40	0.113
41	41	0.215
42	42	0.724
43	43	0.741
44	44	0.922
45	45	0.774
46	46	0.79
47	47	0.408
48	48	0.675
49	49	0.591
5	5	0.807
50	50	0.601
51	51	0.452
52	52	0.981
53	53	0.368
54	54	0.694
55	55	0.0213
56	56	0.985
57	57	0.748
58	58	0.209
59	59	0.537
6	6	0.912
60	60	0.469
61	61	0.304
62	62	0.845
63	63	0.471
64	64	0.248
65	65	0.879
66	66	0.0657
67	67	0.984
68	68	0.932
69	69	0.993
7	7	0.118
70	70	0.643
71	71	0.333
72	72	0.225
73	73	0.421
74	74	0.439
75	75	0.261
76	76	0.743
77	77	0.073
78	78	0.265
79	79	0.0018
8	8	0.537
80	80	0.0565
81	81	0.594
82	82	0.186
83	83	0.324
84	84	0.328
85	85	0.33
86	86	0.279
87	87	0.318
88	88	0.145
89	89	0.273
9	9	0.718
90	90	0.914
91	91	0.839
92	92	0.35
93	93	0.683
94	94	0.385
95	95	0.381
96	96	0.595
97	97	0.509
98	98	0.0408
99	99	0.00231

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13819

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
FF:0000002 in vivo cell sample
FF:0000210 human sample
FF:0200002 olfactory epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0200002 (olfactory epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004726
+|accession_numbers=CAGE;DRX008387;DRR009259;DRZ000684;DRZ002069;DRZ012034;DRZ013419
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.08!135.53!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!2.05!111.87!PAX9;;chr14:61116183..61116208,-!p1@SIX1!1.80!227.02!SIX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.74!87.62!TFAP2A;;chr2:223163706..223163730,-!p1@PAX3!1.71!50.72!PAX3;;chr7:19157248..19157268,-!p1@TWIST1!1.58!100.16!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.53!33.03!PRRX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.50!38.54!TFAP2C;;chr1:170633348..170633399,+!p2@PRRX1!1.42!34.32!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!1.41!24.60!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.40!31.16!PRRX2;;chr6:10415276..10415341,-!p2@TFAP2A!1.38!27.65!TFAP2A;;chr11:46299199..46299233,+!p1@CREB3L1!1.37!112.22!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!1.34!35.03!TCF12;;chr19:13134772..13134822,+!p2@NFIX!1.34!30.34!NFIX;;chr14:37126765..37126799,+!p2@PAX9!1.33!20.50!PAX9;;chr7:44143925..44143970,+!p1@AEBP1!1.25!365.01!AEBP1;;chr1:170633262..170633285,+!p3@PRRX1!1.25!19.21!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!1.24!16.40!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!1.23!24.37!OSR2;;chr1:170632723..170632739,+!p8@PRRX1!1.22!15.46!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!1.20!14.88!PRRX1;;chr12:115122318..115122331,-!p2@TBX3!1.18!14.29!TBX3;;chr15:96869255..96869291,+!p6@NR2F2!1.17!24.95!NR2F2;;chr7:44143978..44143989,+!p2@AEBP1!1.16!24.48!AEBP1;;chr10:63809013..63809041,+!p3@ARID5B!1.14!70.28!ARID5B;;chr3:128212033..128212051,-!p1@GATA2!1.14!12.65!GATA2;;chr15:96873984..96873999,+!p3@NR2F2!1.12!89.96!NR2F2;;chr1:170632683..170632696,+!p12@PRRX1!1.12!12.30!PRRX1;;chr6:10412576..10412599,-!p5@TFAP2A!1.11!11.83!TFAP2A;;chr1:170632137..170632172,+!p10@PRRX1!1.10!11.71!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.09!19.09!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.07!27.06!FOXC2;;chr3:128206762..128206781,-!p2@GATA2!1.06!66.07!GATA2;;chr3:141121847..141121868,+!p5@ZBTB38!1.04!15.46!ZBTB38;;chr6:10412392..10412409,-!p4@TFAP2A!1.03!11.13!TFAP2A;;chr16:31076332..31076388,-!p3@ZNF668!1.03!9.61!ZNF668;;chr9:96717629..96717644,-!p1@BARX1!1.03!9.61!BARX1;;chr1:110613238..110613272,-!p1@ALX3!1.02!9.37!ALX3;;chr7:44143997..44144008,+!p3@AEBP1!1.01!11.95!AEBP1;;chr1:170632115..170632136,+!p9@PRRX1!0.98!8.55!PRRX1;;chr11:44331576..44331650,-!p1@ALX4!0.97!8.43!ALX4;;chr2:8822176..8822196,+!p1@ID2!0.96!1170.59!ID2;;chr12:80085061..80085119,-!p6@PAWR!0.96!13.24!PAWR;;chr1:170632647..170632659,+!p17@PRRX1!0.96!8.20!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.95!7.97!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.95!7.85!PRRX1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.94!78.95!GLIS2;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!33.39!ZFHX4;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.73!KDM5D;;chr14:61116168..61116180,-!p2@SIX1!0.93!8.67!SIX1;;chr3:157823517..157823562,-!p1@SHOX2!0.93!8.08!SHOX2;;chr12:115121962..115121987,-!p1@TBX3!0.92!64.19!TBX3;;chr12:115122303..115122314,-!p6@TBX3!0.92!7.26!TBX3;;chr6:152126790..152126828,+!p3@ESR1!0.92!7.26!ESR1;;chr2:46524537..46524553,+!p1@EPAS1!0.91!727.45!EPAS1;;chr11:12696002..12696022,+!p2@TEAD1!0.91!17.92!TEAD1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.90!7.38!GLIS1;;chr15:96874012..96874042,+!p2@NR2F2!0.89!63.96!NR2F2;;chr15:57511589..57511608,+!p4@TCF12!0.89!6.79!TCF12;;chr8:93074803..93074845,-!p1@RUNX1T1!0.89!6.68!RUNX1T1;;chr2:19558373..19558392,-!p1@OSR1!0.88!18.74!OSR1;;chr5:139492456..139492489,+!p7@PURA!0.88!6.56!PURA;;chr14:95236440..95236465,-!p1@GSC!0.88!6.56!GSC;;chr15:96873921..96873946,+!p1@NR2F2!0.82!170.79!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.82!7.85!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!0.81!18.51!TWIST2;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.53!TWIST1;;chr19:13135582..13135600,+!p3@NFIX!0.81!5.51!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.80!134.01!NFIX;;chr10:63809106..63809127,+!p1@ARID5B!0.80!78.13!ARID5B;;chr16:86544113..86544145,+!p1@FOXF1!0.80!6.79!FOXF1;;chr10:114710218..114710229,+!p4@TCF7L2!0.79!10.89!TCF7L2;;chr3:25470156..25470227,+!p2@RARB!0.79!5.15!RARB;;chr6:126240380..126240430,+!p2@NCOA7!0.78!13.82!NCOA7;;chr6:85473156..85473210,-!p2@TBX18!0.78!6.21!TBX18;;chr1:170632959..170632987,+!p4@PRRX1!0.78!5.62!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.78!5.04!PRRX1;;chr11:707063..707088,-!p4@DEAF1!0.77!6.44!DEAF1;;chr12:115122005..115122016,-!p3@TBX3!0.77!5.97!TBX3;;chr15:96869222..96869251,+!p18@NR2F2!0.77!5.86!NR2F2;;chr14:37126814..37126834,+!p4@PAX9!0.77!4.92!PAX9;;chr12:80084303..80084332,-!p1@PAWR!0.76!31.04!PAWR;;chr11:12696071..12696086,+!p3@TEAD1!0.76!6.44!TEAD1;;chr6:28321971..28321995,-!p1@ZNF323!0.76!4.80!ZNF323;;chr19:13136130..13136165,+!p6@NFIX!0.75!6.33!NFIX;;chr10:64134120..64134183,+!p1@ZNF365!0.75!5.74!ZNF365;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.57!ZFY;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!36.90!ZMAT3;;chr11:65686802..65686818,+!p6@DRAP1!0.74!8.32!DRAP1;;chr15:96869292..96869320,+!p15@NR2F2!0.74!6.68!NR2F2;;chr1:110613276..110613299,-!p2@ALX3!0.74!4.45!ALX3;;chr1:44513995..44514031,+!p1@KLF17!0.74!4.45!KLF17;;chr5:72744594..72744609,-!p1@FOXD1!0.73!22.37!FOXD1;;chr6:45390025..45390076,+!p2@RUNX2!0.73!11.25!RUNX2;;chr5:72744445..72744466,-!p2@FOXD1!0.73!7.73!FOXD1;;chr3:42695180..42695201,+!p2@ZBTB47!0.73!4.33!ZBTB47;;chr2:208030647..208030689,-!p1@KLF7!0.72!40.18!KLF7;;chr5:139487608..139487663,+!p3@PURA!0.72!9.72!PURA;;chr19:45908292..45908374,-!p1@PPP1R13L!0.71!40.88!PPP1R13L;;chr1:164528410..164528428,+!p1@PBX1!0.71!34.56!PBX1;;chr12:80084737..80084763,-!p3@PAWR!0.71!17.34!PAWR;;chr14:24837368..24837401,+!p1@NFATC4!0.71!10.43!NFATC4;;chr6:1610293..1610310,+!p1@FOXC1!0.71!7.38!FOXC1;;chr6:126240442..126240459,+!p4@NCOA7!0.71!5.51!NCOA7;;chr22:41763452..41763466,+!p2@TEF!0.71!4.10!TEF;;chr3:114343768..114343822,-!p1@ZBTB20!0.70!19.45!ZBTB20;;chr7:137686763..137686784,-!p5@CREB3L2!0.70!7.38!CREB3L2;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.74!NR2F2;;chr17:1959369..1959388,+!p2@HIC1!0.69!11.25!HIC1;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.66!EBF1;;chr15:96876966..96877017,+!p12@NR2F2!0.69!5.97!NR2F2;;chr5:321810..321877,+!p1@AHRR!0.68!13.47!AHRR;;chr12:80084279..80084293,-!p8@PAWR!0.68!6.68!PAWR;;chr16:86600870..86600921,+!p2@FOXC2!0.68!3.75!FOXC2;;chr10:77161504..77161530,-!p1@ZNF503!0.67!57.17!ZNF503;;chr6:85474299..85474324,-!p1@TBX18!0.67!7.03!TBX18;;chr20:55205825..55205847,+!p2@TFAP2C!0.67!3.63!TFAP2C;;chr17:46126136..46126152,+!p1@NFE2L1!0.66!215.31!NFE2L1;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.91!ZFP106;;chr3:178789566..178789620,-!p1@ZMAT3!0.65!71.46!ZMAT3;;chr10:114710098..114710130,+!p2@TCF7L2!0.65!30.57!TCF7L2;;chr15:96875041..96875052,+!p17@NR2F2!0.65!5.27!NR2F2;;chr14:95236551..95236576,-!p2@GSC!0.65!3.51!GSC;;chr15:96869165..96869183,+!p20@NR2F2!0.65!3.51!NR2F2;;chr11:44331679..44331702,-!p2@ALX4!0.65!3.51!ALX4;;chr14:75894714..75894733,+!p1@JDP2!0.64!113.39!JDP2;;chr10:114709999..114710031,+!p1@TCF7L2!0.64!94.30!TCF7L2;;chr17:59477233..59477263,+!p1@TBX2!0.64!11.71!TBX2;;chr10:63809077..63809089,+!p5@ARID5B!0.64!8.20!ARID5B;;chr10:63808979..63808990,+!p8@ARID5B!0.64!3.75!ARID5B;;chr1:170633194..170633205,+!p18@PRRX1!0.64!3.40!PRRX1;;chr11:12695944..12695989,+!p1@TEAD1!0.63!137.76!TEAD1;;chr12:104531823..104531849,-!p5@NFYB!0.63!7.50!NFYB;;chr3:141121820..141121838,+!p9@ZBTB38!0.63!3.28!ZBTB38;;chr6:152126830..152126847,+!p4@ESR1!0.63!3.28!ESR1;;chr12:124873357..124873401,-!p1@NCOR2!0.62!43.46!NCOR2;;chr10:114710244..114710257,+!p3@TCF7L2!0.62!9.84!TCF7L2;;chr15:96874927..96874938,+!p8@NR2F2!0.62!7.61!NR2F2;;chr10:31607702..31607755,+!p3@ZEB1!0.62!3.75!ZEB1;;chr9:96717678..96717689,-!p2@BARX1!0.62!3.16!BARX1;;chr19:47523058..47523114,+!p1@NPAS1!0.62!3.16!NPAS1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.62!3.16!RUNX1T1;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.68!ARID5B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.34!GLIS2;;chr9:16870710..16870763,-!p1@BNC2!0.61!5.86!BNC2;;chr10:64576105..64576133,-!p1@EGR2!0.60!6.91!EGR2;;chr17:38256822..38256851,-!p1@NR1D1!0.59!27.29!NR1D1;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.93!CREB3L1;;chr12:53625846..53625861,-!p6@RARG!0.59!2.93!RARG;;chr6:35464817..35464894,-!p1@TEAD3!0.58!53.30!TEAD3;;chr17:7492684..7492778,-!p2@SOX15!0.58!6.68!SOX15;;chr2:239756739..239756755,+!p2@TWIST2!0.58!5.27!TWIST2;;chr8:72756667..72756736,-!p2@MSC!0.58!4.80!MSC;;chr14:21566731..21566836,-!p1@ZNF219!0.57!35.73!ZNF219;;chr12:104531854..104531893,-!p2@NFYB!0.57!11.83!NFYB;;chr15:96874145..96874166,+!p7@NR2F2!0.57!5.86!NR2F2;;chrX:56258844..56258882,+!p1@KLF8!0.57!3.98!KLF8;;chr18:42260840..42260860,+!p2@SETBP1!0.57!2.69!SETBP1;;chr14:37132241..37132304,+!p3@PAX9!0.57!2.69!PAX9;;chr13:45151259..45151326,-!p2@TSC22D1!0.56!19.21!TSC22D1;;chr11:65667884..65667895,-!p2@FOSL1!0.56!12.30!FOSL1;;chr18:19749541..19749557,+!p1@GATA6!0.56!9.84!GATA6;;chr1:164528445..164528459,+!p2@PBX1!0.56!9.84!PBX1;;chr12:104531785..104531812,-!p3@NFYB!0.56!7.97!NFYB;;chr15:96881221..96881240,+!p19@NR2F2!0.56!3.75!NR2F2;;chr19:13136241..13136258,+!p7@NFIX!0.56!3.75!NFIX;;chr11:46299186..46299195,+!p3@CREB3L1!0.56!3.05!CREB3L1;;chr13:45151403..45151433,-!p5@TSC22D1!0.55!6.56!TSC22D1;;chr14:61191018..61191048,-!p1@SIX4!0.55!6.33!SIX4;;chr9:4299552..4299598,-!p5@GLIS3!0.55!4.92!GLIS3;;chr6:36355513..36355578,-!p2@ETV7!0.55!3.40!ETV7;;chr12:54694758..54694805,-!p1@NFE2!0.55!3.28!NFE2;;chr17:46132044..46132080,+!p4@NFE2L1!0.55!2.58!NFE2L1;;chr7:137686791..137686821,-!p1@CREB3L2!0.54!91.37!CREB3L2;;chr12:124873852..124873881,-!p3@NCOR2!0.54!18.74!NCOR2;;chr12:53625966..53626012,-!p2@RARG!0.54!7.85!RARG;;chr10:114710060..114710069,+!p5@TCF7L2!0.54!4.69!TCF7L2;;chr12:115122262..115122271,-!p7@TBX3!0.54!2.46!TBX3;;chr1:119530493..119530572,-!p1@TBX15!0.54!2.46!TBX15;;chr6:126112074..126112144,+!p1@NCOA7!0.53!40.65!NCOA7;;chr2:85360499..85360598,+!p1@TCF7L1!0.53!16.63!TCF7L1;;chr11:65687362..65687436,+!p3@DRAP1!0.53!13.47!DRAP1;;chr15:76629123..76629151,+!p1@ISL2!0.53!2.69!ISL2;;chr12:53614115..53614154,-!p1@RARG!0.52!15.70!RARG;;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000710;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002167
 |ffid_belonging_in_development=CL:0000133,CL:0000221
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Olfactory%2520epithelial%2520cells%252c%2520donor4.CNhs13819.11936-126A1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11936-126A1
 |is_a=FF:0000002;;FF:0000210;;FF:0200002
 |is_obsolete=
+|library_id=CNhs13819
+|library_id_phase_based=2:CNhs13819
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11936
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11936
 |name=Olfactory epithelial cells, donor4
 |namespace=
@@ Line 48: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=126
@@ Line 62: / Line 79: @@
 |rna_weight_ug=10.71
 |sample_age=64
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 83: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11936-126A1;search_select_hide=table117:FF:11936-126A1
 }}

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FF:11936-126A1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:30, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0