FF:12151-128F9: Difference between revisions

Latest revision as of 18:32, 4 June 2020

Name:	CD19+ B Cells (pluriselect), donor090325, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs12531
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	NA
cell type	b cell
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005465

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12531		CAGE		DRX008053		DRR008925

Accession ID Hg19

Library id		BAM		CTSS
CNhs12531		DRZ000350		DRZ001735

Accession ID Hg38

Library id		BAM		CTSS
CNhs12531		DRZ011700		DRZ013085

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.068
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.172
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.154
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.268
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.154
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.154
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.363
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.38
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.456
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.307
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.722
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.179
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.314
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.246
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.153
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.57
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.154
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.154
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.536
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.289
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.917
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.293
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.435
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.378
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.268
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.268
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.313
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	1.017
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.75
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.154
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12531

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	7.69392e-5
MA0003.1	MA0003.1	0.886
MA0004.1	MA0004.1	0.156
MA0006.1	MA0006.1	0.394
MA0007.1	MA0007.1	0.554
MA0009.1	MA0009.1	0.712
MA0014.1	MA0014.1	0.28
MA0017.1	MA0017.1	0.164
MA0018.2	MA0018.2	0.0109
MA0019.1	MA0019.1	0.795
MA0024.1	MA0024.1	0.547
MA0025.1	MA0025.1	0.815
MA0027.1	MA0027.1	0.717
MA0028.1	MA0028.1	1.72697e-6
MA0029.1	MA0029.1	0.33
MA0030.1	MA0030.1	0.00766
MA0031.1	MA0031.1	0.0636
MA0035.2	MA0035.2	0.927
MA0038.1	MA0038.1	0.785
MA0039.2	MA0039.2	0.121
MA0040.1	MA0040.1	0.985
MA0041.1	MA0041.1	0.209
MA0042.1	MA0042.1	0.817
MA0043.1	MA0043.1	0.00359
MA0046.1	MA0046.1	0.59
MA0047.2	MA0047.2	0.193
MA0048.1	MA0048.1	0.561
MA0050.1	MA0050.1	6.32324e-12
MA0051.1	MA0051.1	4.66978e-6
MA0052.1	MA0052.1	0.406
MA0055.1	MA0055.1	0.367
MA0057.1	MA0057.1	0.531
MA0058.1	MA0058.1	0.0627
MA0059.1	MA0059.1	0.245
MA0060.1	MA0060.1	0.683
MA0061.1	MA0061.1	4.57432e-10
MA0062.2	MA0062.2	6.77707e-17
MA0065.2	MA0065.2	0.0863
MA0066.1	MA0066.1	0.611
MA0067.1	MA0067.1	0.0464
MA0068.1	MA0068.1	0.00122
MA0069.1	MA0069.1	0.591
MA0070.1	MA0070.1	0.228
MA0071.1	MA0071.1	0.973
MA0072.1	MA0072.1	0.829
MA0073.1	MA0073.1	0.545
MA0074.1	MA0074.1	0.935
MA0076.1	MA0076.1	2.46711e-10
MA0077.1	MA0077.1	0.17
MA0078.1	MA0078.1	0.739
MA0079.2	MA0079.2	0.66
MA0080.2	MA0080.2	2.94931e-12
MA0081.1	MA0081.1	6.90799e-5
MA0083.1	MA0083.1	0.263
MA0084.1	MA0084.1	0.298
MA0087.1	MA0087.1	0.146
MA0088.1	MA0088.1	0.0985
MA0090.1	MA0090.1	9.29019e-5
MA0091.1	MA0091.1	0.835
MA0092.1	MA0092.1	0.62
MA0093.1	MA0093.1	0.161
MA0099.2	MA0099.2	1.06481e-4
MA0100.1	MA0100.1	0.0758
MA0101.1	MA0101.1	3.35352e-8
MA0102.2	MA0102.2	0.0146
MA0103.1	MA0103.1	0.0316
MA0104.2	MA0104.2	0.0748
MA0105.1	MA0105.1	1.85185e-9
MA0106.1	MA0106.1	0.244
MA0107.1	MA0107.1	2.07042e-8
MA0108.2	MA0108.2	4.16751e-5
MA0111.1	MA0111.1	0.409
MA0112.2	MA0112.2	0.202
MA0113.1	MA0113.1	0.653
MA0114.1	MA0114.1	0.205
MA0115.1	MA0115.1	0.428
MA0116.1	MA0116.1	3.07384e-5
MA0117.1	MA0117.1	0.575
MA0119.1	MA0119.1	0.419
MA0122.1	MA0122.1	0.414
MA0124.1	MA0124.1	0.442
MA0125.1	MA0125.1	0.962
MA0131.1	MA0131.1	0.0167
MA0135.1	MA0135.1	0.0576
MA0136.1	MA0136.1	2.29257e-20
MA0137.2	MA0137.2	0.414
MA0138.2	MA0138.2	0.751
MA0139.1	MA0139.1	0.346
MA0140.1	MA0140.1	0.722
MA0141.1	MA0141.1	0.718
MA0142.1	MA0142.1	0.383
MA0143.1	MA0143.1	0.753
MA0144.1	MA0144.1	0.988
MA0145.1	MA0145.1	0.243
MA0146.1	MA0146.1	0.196
MA0147.1	MA0147.1	0.122
MA0148.1	MA0148.1	0.914
MA0149.1	MA0149.1	0.229
MA0150.1	MA0150.1	0.867
MA0152.1	MA0152.1	0.235
MA0153.1	MA0153.1	0.0122
MA0154.1	MA0154.1	2.65054e-4
MA0155.1	MA0155.1	0.585
MA0156.1	MA0156.1	1.4178e-16
MA0157.1	MA0157.1	0.128
MA0159.1	MA0159.1	0.164
MA0160.1	MA0160.1	0.396
MA0162.1	MA0162.1	0.986
MA0163.1	MA0163.1	1.33777e-6
MA0164.1	MA0164.1	0.676
MA0258.1	MA0258.1	0.339
MA0259.1	MA0259.1	0.483

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12531

Novel motif	Logo	P-value
1	1	0.183
10	10	0.0267
100	100	0.487
101	101	0.386
102	102	0.958
103	103	0.782
104	104	0.211
105	105	0.365
106	106	0.683
107	107	0.12
108	108	0.133
109	109	0.114
11	11	0.239
110	110	0.341
111	111	0.207
112	112	0.412
113	113	0.0451
114	114	0.693
115	115	0.775
116	116	0.671
117	117	4.47247e-4
118	118	0.179
119	119	0.957
12	12	0.823
120	120	0.648
121	121	0.209
122	122	0.621
123	123	0.0251
124	124	0.534
125	125	0.125
126	126	0.218
127	127	0.971
128	128	0.313
129	129	0.332
13	13	0.287
130	130	0.461
131	131	0.584
132	132	0.338
133	133	0.04
134	134	0.463
135	135	0.674
136	136	0.215
137	137	0.0131
138	138	0.402
139	139	0.203
14	14	0.301
140	140	0.777
141	141	0.451
142	142	0.544
143	143	0.236
144	144	0.661
145	145	0.189
146	146	0.333
147	147	0.0325
148	148	0.304
149	149	0.817
15	15	0.204
150	150	0.877
151	151	0.832
152	152	0.794
153	153	0.861
154	154	0.909
155	155	0.0189
156	156	0.733
157	157	0.227
158	158	0.237
159	159	0.0817
16	16	0.542
160	160	0.845
161	161	0.224
162	162	0.188
163	163	0.39
164	164	0.239
165	165	0.18
166	166	0.515
167	167	0.104
168	168	0.25
169	169	0.882
17	17	0.741
18	18	0.752
19	19	0.465
2	2	0.356
20	20	0.184
21	21	0.841
22	22	0.941
23	23	0.489
24	24	0.7
25	25	0.0277
26	26	0.339
27	27	0.819
28	28	0.343
29	29	0.0417
3	3	0.066
30	30	0.144
31	31	0.919
32	32	0.0965
33	33	0.355
34	34	0.937
35	35	0.193
36	36	0.0399
37	37	0.0905
38	38	0.486
39	39	0.408
4	4	0.912
40	40	0.214
41	41	0.133
42	42	0.135
43	43	0.27
44	44	0.953
45	45	0.801
46	46	0.538
47	47	0.132
48	48	0.328
49	49	0.192
5	5	0.469
50	50	0.983
51	51	0.762
52	52	0.545
53	53	0.368
54	54	0.979
55	55	0.366
56	56	0.827
57	57	0.765
58	58	0.05
59	59	0.858
6	6	0.742
60	60	0.494
61	61	0.0492
62	62	0.125
63	63	0.812
64	64	0.538
65	65	0.965
66	66	0.897
67	67	0.219
68	68	0.524
69	69	0.67
7	7	0.136
70	70	0.355
71	71	0.0562
72	72	0.0335
73	73	0.428
74	74	0.31
75	75	0.00292
76	76	0.025
77	77	0.283
78	78	0.284
79	79	0.327
8	8	0.855
80	80	0.0121
81	81	0.204
82	82	0.427
83	83	0.971
84	84	0.16
85	85	0.723
86	86	0.0577
87	87	0.0544
88	88	0.728
89	89	0.401
9	9	0.767
90	90	0.0977
91	91	0.637
92	92	0.855
93	93	0.985
94	94	0.0827
95	95	0.00472
96	96	0.773
97	97	0.603
98	98	0.335
99	99	0.00383

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12531

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007946
+|DRA_sample_Accession=CAGE@SAMD00005465
-|accession_numbers=CAGE;DRX008053;DRR008925;DRZ000350;DRZ001735
+|accession_numbers=CAGE;DRX008053;DRR008925;DRZ000350;DRZ001735;DRZ011700;DRZ013085
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.49!309.38!IRF8;;chr2:100759010..100759035,-!p1@AFF3!2.40!250.92!AFF3;;chr19:50922187..50922204,+!p1@SPIB!2.35!225.31!SPIB;;chr11:111249993..111250006,-!p1@POU2AF1!2.25!178.80!POU2AF1;;chr6:391743..391759,+!p1@IRF4!2.06!113.94!IRF4;;chr2:100759037..100759058,-!p2@AFF3!2.06!112.66!AFF3;;chr11:47400078..47400106,-!p1@SPI1!2.05!110.95!SPI1;;chr6:91006518..91006570,-!p1@BACH2!2.04!241.96!BACH2;;chr2:231090433..231090469,+!p1@SP140!1.98!95.16!SP140;;chr2:231090471..231090504,+!p2@SP140!1.93!84.49!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.93!83.64!IKZF3;;chr2:68592406..68592424,+!p1@PLEK!1.87!73.40!PLEK;;chr2:100758991..100759009,-!p3@AFF3!1.75!54.62!AFF3;;chr5:88178983..88179012,-!p1@MEF2C!1.71!372.96!MEF2C;;chr3:71355163..71355209,-!p5@FOXP1!1.71!68.28!FOXP1;;chr6:91006575..91006602,-!p2@BACH2!1.64!62.30!BACH2;;chr7:50344251..50344288,+!p3@IKZF1!1.63!41.39!IKZF1;;chr8:86099884..86099918,+!p4@E2F5!1.60!38.41!E2F5;;chr7:50343634..50343717,+!p2@IKZF1!1.58!36.70!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.56!104.12!BCL11A;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.14!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.54!49.50!LYL1;;chr17:38020557..38020572,-!p4@IKZF3!1.54!33.28!IKZF3;;chr3:32023232..32023273,+!p1@ZNF860!1.53!46.51!ZNF860;;chr20:56195474..56195506,-!p1@ZBP1!1.48!29.02!ZBP1;;chrY:21906594..21906622,-!p1@KDM5D!1.46!28.16!KDM5D;;chr19:16435625..16435682,+!p1@KLF2!1.41!759.58!KLF2;;chr3:71409904..71409927,-!p46@FOXP1!1.39!23.47!FOXP1;;chr19:36391434..36391450,-!p1@NFKBID!1.35!40.97!NFKBID;;chr18:52989031..52989079,-!p2@TCF4!1.34!48.65!TCF4;;chr13:41593425..41593480,-!p1@ELF1!1.33!127.17!ELF1;;chr8:81397846..81397860,+!p3@ZBTB10!1.33!25.60!ZBTB10;;chr1:25256756..25256774,-!p1@RUNX3!1.32!37.13!RUNX3;;chr19:13213704..13213726,-!p3@LYL1!1.32!26.03!LYL1;;chr2:60781201..60781258,-!p3@BCL11A!1.32!20.06!BCL11A;;chr7:50348268..50348366,+!p4@IKZF1!1.32!20.06!IKZF1;;chr19:45579725..45579743,-!p1@ZNF296!1.31!84.92!ZNF296;;chr5:158526756..158526797,-!p3@EBF1!1.31!19.20!EBF1;;chr2:60778035..60778060,-!p4@BCL11A!1.30!22.62!BCL11A;;chr17:38020516..38020544,-!p5@IKZF3!1.29!18.35!IKZF3;;chr7:64838786..64838809,+!p2@ZNF92!1.27!99.43!ZNF92;;chr8:86089627..86089653,+!p3@E2F5!1.27!20.06!E2F5;;chr17:37934204..37934241,-!p3@IKZF3!1.27!17.50!IKZF3;;chr7:77469439..77469459,+!p6@PHTF2!1.25!16.64!PHTF2;;chr4:185395590..185395627,-!p3@IRF2!1.24!20.48!IRF2;;chr2:68592394..68592405,+!p2@PLEK!1.24!16.22!PLEK;;chr5:88179017..88179046,-!p2@MEF2C!1.22!61.88!MEF2C;;chr4:185395633..185395651,-!p2@IRF2!1.21!24.32!IRF2;;chr3:18486354..18486377,-!p2@SATB1!1.21!19.20!SATB1;;chr2:61108695..61108753,+!p1@REL!1.19!98.57!REL;;chr6:91006503..91006517,-!p3@BACH2!1.19!14.51!BACH2;;chr3:71631151..71631194,-!p15@FOXP1!1.18!15.79!FOXP1;;chr2:231090344..231090361,-!p3@SP110!1.18!14.08!SP110;;chr3:101546827..101546847,+!p2@NFKBIZ!1.17!19.20!NFKBIZ;;chr2:100759060..100759073,-!p8@AFF3!1.17!13.66!AFF3;;chr2:100759076..100759088,-!p10@AFF3!1.14!12.80!AFF3;;chr8:86089531..86089544,+!p7@E2F5!1.14!12.80!E2F5;;chr11:128563948..128564003,+!p1@FLI1!1.13!149.78!FLI1;;chr19:42636586..42636607,-!p1@POU2F2!1.11!32.86!POU2F2;;chr9:3525727..3525828,-!p2@RFX3!1.10!29.44!RFX3;;chr6:157098579..157098634,+!p4@ARID1B!1.10!26.03!ARID1B;;chr5:88120151..88120177,-!p6@MEF2C!1.10!11.52!MEF2C;;chrY:2803415..2803468,+!p1@ZFY!1.10!11.52!ZFY;;chr20:50159198..50159299,-!p1@NFATC2!1.09!16.64!NFATC2;;chr6:144385698..144385742,-!p2@PLAGL1!1.09!13.66!PLAGL1;;chr9:117150254..117150271,-!p1@AKNA!1.08!30.30!AKNA;;chr3:18487057..18487105,-!p4@SATB1!1.08!11.09!SATB1;;chr10:104154246..104154347,+!p3@NFKB2!1.07!66.14!NFKB2;;chr10:94449703..94449718,+!p1@HHEX!1.07!42.25!HHEX;;chrX:101186981..101187030,-!p1@ZMAT1!1.05!33.71!ZMAT1;;chr11:47400062..47400077,-!p2@SPI1!1.03!9.81!SPI1;;chr10:94449675..94449694,+!p2@HHEX!1.02!25.60!HHEX;;chr14:75988771..75988826,+!p1@BATF!1.02!12.80!BATF;;chr7:77428066..77428132,+!p2@PHTF2!1.01!61.45!PHTF2;;chr1:91487836..91487854,-!p3@ZNF644!1.01!21.34!ZNF644;;chr2:145277640..145277771,-!p1@ZEB2!1.00!122.90!ZEB2;;chr8:81397876..81397898,+!p5@ZBTB10!1.00!10.67!ZBTB10;;chr16:85936412..85936431,+!p2@IRF8!1.00!8.96!IRF8;;chr2:208394817..208394834,+!p3@CREB1!0.99!36.27!CREB1;;chr19:11959532..11959593,+!p1@ZNF439!0.99!34.14!ZNF439;;chr21:36421535..36421610,-!p2@RUNX1!0.99!32.00!RUNX1;;chr5:88179195..88179224,-!p3@MEF2C!0.99!14.08!MEF2C;;chrX:56258844..56258882,+!p1@KLF8!0.99!12.38!KLF8;;chr8:81397820..81397836,+!p2@ZBTB10!0.99!11.09!ZBTB10;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!235.98!TSC22D3;;chr2:61108650..61108687,+!p2@REL!0.98!43.53!REL;;chr4:57522513..57522548,-!p4@HOPX!0.98!8.53!HOPX;;chrY:21906761..21906810,-!p2@KDM5D!0.98!8.53!KDM5D;;chr17:56565257..56565283,-!p2@HSF5!0.96!8.11!HSF5;;chr10:94451574..94451587,+!p6@HHEX!0.96!8.11!HHEX;;chr18:42260030..42260055,+!p3@SETBP1!0.95!9.81!SETBP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.94!78.95!NFKBIE;;chr6:41701898..41701939,-!p5@TFEB!0.94!7.68!TFEB;;chr17:38020607..38020621,-!p9@IKZF3!0.94!7.68!IKZF3;;chr3:71631217..71631234,-!p33@FOXP1!0.94!7.68!FOXP1;;chr9:37034186..37034216,-!p2@PAX5!0.94!7.68!PAX5;;chr2:231280954..231280965,+!p2@SP100!0.93!14.08!SP100;;chr1:14026671..14026705,+!p2@PRDM2!0.92!46.51!PRDM2;;chr19:20748574..20748599,-!p1@ZNF737!0.92!45.23!ZNF737;;chr11:128392273..128392308,-!p2@ETS1!0.92!32.43!ETS1;;chr3:114866084..114866118,-!p2@ZBTB20!0.92!27.31!ZBTB20;;chr1:151319654..151319698,-!p2@RFX5!0.92!16.64!RFX5;;chr5:158526709..158526741,-!p7@EBF1!0.92!7.25!EBF1;;chr2:208031542..208031595,-!p2@KLF7!0.91!52.06!KLF7;;chr14:74226961..74227020,-!p1@C14orf43!0.90!48.22!C14orf43;;chr12:54778471..54778528,-!p1@ZNF385A!0.89!6.83!ZNF385A;;chr12:57914742..57914754,+!p14@MBD6!0.89!6.83!MBD6;;chr17:37934365..37934387,-!p2@IKZF3!0.89!6.83!IKZF3;;chr19:49140595..49140607,-!p3@DBP!0.88!9.39!DBP;;chr14:69262947..69262986,-!p3@ZFP36L1!0.88!8.11!ZFP36L1;;chr18:52989001..52989030,-!p10@TCF4!0.88!7.25!TCF4;;chr5:131826457..131826514,-!p1@IRF1!0.87!265.43!IRF1;;chr19:13213954..13214021,-!p4@LYL1!0.87!6.40!LYL1;;chr1:167298300..167298319,+!p2@POU2F1!0.87!6.40!POU2F1;;chr14:64971288..64971316,-!p2@ZBTB25!0.86!20.06!ZBTB25;;chr2:185463247..185463263,+!p1@ZNF804A!0.86!11.52!ZNF804A;;chr7:128577972..128578047,+!p1@IRF5!0.86!10.24!IRF5;;chr19:47616992..47617011,-!p4@ZC3H4!0.85!13.66!ZC3H4;;chrX:56258811..56258838,+!p2@KLF8!0.84!8.11!KLF8;;chr9:37027156..37027193,-!p4@PAX5!0.84!5.97!PAX5;;chr8:86089498..86089519,+!p6@E2F5!0.84!5.97!E2F5;;chr13:41593493..41593506,-!p8@ELF1!0.84!5.97!ELF1;;chr17:45810594..45810608,+!p1@TBX21!0.84!5.97!TBX21;;chr2:231084659..231084721,-!p1@SP110!0.83!142.95!SP110;;chr5:172483347..172483407,+!p1@C5orf41!0.83!46.09!CREBRF;;chr19:58220517..58220583,-!p1@ZNF154!0.83!19.20!ZNF154;;chr13:41240737..41240787,-!p1@FOXO1!0.82!72.54!FOXO1;;chr2:231191875..231191918,+!p1@SP140L!0.82!59.32!SP140L;;chr19:49140609..49140643,-!p1@DBP!0.82!33.71!DBP;;chr8:123793860..123793921,+!p2@ZHX2!0.82!16.22!ZHX2;;chr12:54694758..54694805,-!p1@NFE2!0.82!6.83!NFE2;;chr7:115799942..115799955,-!p5@TFEC!0.82!5.55!TFEC;;chr7:50343895..50343936,+!p5@IKZF1!0.82!5.55!IKZF1;;chr17:38020481..38020506,-!p7@IKZF3!0.82!5.55!IKZF3;;chr1:158979686..158979745,+!p1@IFI16!0.81!195.87!IFI16;;chr7:21467674..21467727,+!p1@SP4!0.81!23.04!SP4;;chr14:64970670..64970712,-!p3@ZBTB25!0.81!12.38!ZBTB25;;chrX:131623044..131623089,-!p1@MBNL3!0.80!23.47!MBNL3;;chr6:41700616..41700664,-!p8@TFEB!0.79!5.12!TFEB;;chr17:37934188..37934202,-!p8@IKZF3!0.79!5.12!IKZF3;;chr19:36204309..36204335,+!p1@ZBTB32!0.79!5.12!ZBTB32;;chr20:46130672..46130686,+!p2@NCOA3!0.78!24.32!NCOA3;;chr2:148778973..148779035,+!p3@MBD5!0.78!14.08!MBD5;;chr2:178128250..178128293,-!p6@NFE2L2!0.78!13.66!NFE2L2;;chr19:19932513..19932569,-!p1@ZNF506!0.77!102.42!ZNF506;;chr3:129158768..129158819,-!p1@MBD4!0.77!81.51!MBD4;;chr9:117160738..117160782,-!p2@AKNA!0.77!22.19!AKNA;;chrX:131622958..131622978,-!p3@MBNL3!0.77!6.40!MBNL3;;chr2:60780753..60780800,-!p1@BCL11A!0.76!25.60!BCL11A;;chr4:87928142..87928165,+!p5@AFF1!0.76!17.92!AFF1;;chr4:185395191..185395226,-!p4@IRF2!0.76!6.83!IRF2;;chr17:38497662..38497713,+!p4@RARA!0.76!5.55!RARA;;chr18:42260920..42260951,+!p4@SETBP1!0.76!4.69!SETBP1;;chr3:71630844..71630862,-!p40@FOXP1!0.76!4.69!FOXP1;;chr7:97840743..97840786,+!p1@BHLHA15!0.76!4.69!BHLHA15;;chr13:41593405..41593416,-!p9@ELF1!0.76!4.69!ELF1;;chrX:131623026..131623039,-!p5@MBNL3!0.76!4.69!MBNL3;;chr9:37034469..37034474,-!p1@PAX5!0.76!4.69!PAX5;;chrX:56258900..56258917,+!p4@KLF8!0.76!4.69!KLF8;;chr1:161014760..161014788,-!p4@USF1!0.76!4.69!USF1;;chr11:128392085..128392232,-!p1@ETS1!0.75!172.40!ETS1;;chr3:71179699..71179744,-!p2@FOXP1!0.75!37.98!FOXP1;;chr19:37709076..37709154,+!p1@ZNF383!0.75!16.64!ZNF383;;chr8:123793988..123794016,+!p1@ZHX2!0.75!8.53!ZHX2;;chr1:10754477..10754517,-!p1@CASZ1!0.75!8.11!CASZ1;;chr19:38085768..38085821,+!p1@ZNF540!0.75!7.25!ZNF540;;chr22:29196433..29196445,-!p4@XBP1!0.75!5.12!XBP1;;chr14:35873947..35873965,-!p1@NFKBIA!0.74!321.75!NFKBIA;;chr19:21203451..21203475,+!p1@ZNF430!0.74!51.63!ZNF430;;chr1:249132410..249132456,+!p1@ZNF672!0.74!37.98!ZNF672;;chr6:143266297..143266356,-!p1@HIVEP2!0.74!23.90!HIVEP2;;chr13:74707894..74707947,-!p6@KLF12!0.74!5.12!KLF12;;chr7:86781734..86781777,+!p1@DMTF1!0.73!89.19!DMTF1;;chr6:41703296..41703367,-!p1@TFEB!0.73!24.75!TFEB;;chr19:23941680..23941704,-!p1@ZNF681!0.73!14.08!ZNF681;;chr12:57505581..57505598,-!p4@STAT6!0.73!5.55!STAT6;;chr11:615942..615957,-!p1@IRF7!0.72!45.23!IRF7;;chr10:104155480..104155534,+!p2@NFKB2!0.72!31.15!NFKB2;;chr16:89787937..89787971,+!p1@ZNF276!0.72!11.95!ZNF276;;chr19:45972701..45972774,+!p2@FOSB!0.72!5.97!FOSB;;chr14:58765305..58765324,+!p4@ARID4A!0.72!5.55!ARID4A;;chr14:64971893..64971928,-!p8@ZBTB25!0.72!4.27!ZBTB25;;chr14:69262916..69262929,-!p11@ZFP36L1!0.72!4.27!ZFP36L1;;chr5:158526693..158526706,-!p8@EBF1!0.72!4.27!EBF1;;chr4:140005443..140005527,-!p2@ELF2!0.71!27.31!ELF2;;chr1:8763440..8763460,-!p2@RERE!0.71!23.47!RERE;;chr16:3313791..3313834,+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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12531.12151-128F9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12531.12151-128F9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12531.12151-128F9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12531.12151-128F9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090325%252c%2520donation1.CNhs12531.12151-128F9.hg38.nobarcode.ctss.bed.gz
 |id=FF:12151-128F9
 |is_a=EFO:0002091;;FF:0000025;;FF:0000210
 |is_obsolete=
 |library_id=CNhs12531
-|library_id_phase_based=1:CNhs12531
+|library_id_phase_based=2:CNhs12531
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12151
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12151
 |name=CD19+ B Cells (pluriselect), donor090325, donation1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12531,LSID919,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12151-128F9;search_select_hide=table117:FF:12151-128F9
 }}

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FF:12151-128F9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:32, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0