FF:12179-129A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=RNA-Seq@SAMD00013685 | ||
|accession_numbers=CAGE;DRX008529;DRR009401;DRZ000826;DRZ002211;DRZ012176;DRZ013561!RNA-Seq;DRX012353;DRR013801;DRZ003002; | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0010053,FF:0000004,FF:0000281 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:54694653..54694672,-!p2@NFE2!2.80!623.65!NFE2;;chr11:47400078..47400106,-!p1@SPI1!2.73!539.42!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.61!410.53!PLEK;;chrX:131623044..131623089,-!p1@MBNL3!2.51!1254.41!MBNL3;;chrX:131623026..131623039,-!p5@MBNL3!2.40!252.20!MBNL3;;chrX:131622958..131622978,-!p3@MBNL3!2.39!307.01!MBNL3;;chr12:54694758..54694805,-!p1@NFE2!2.37!277.57!NFE2;;chrX:131622988..131623006,-!p8@MBNL3!2.29!194.86!MBNL3;;chr10:51572339..51572376,+!p4@NCOA4!2.23!365.87!NCOA4;;chrX:70315688..70315709,+!p1@FOXO4!2.20!350.14!FOXO4;;chr12:54694807..54694832,-!p3@NFE2!2.19!154.77!NFE2;;chr7:28220506..28220552,-!p3@JAZF1!2.18!149.70!JAZF1;;chr10:51572408..51572454,+!p3@NCOA4!2.13!743.92!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.11!138.03!LYL1;;chr7:28220354..28220441,-!p1@JAZF1!2.02!1494.43!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!2.01!102.00!GATA2;;chr19:12998003..12998021,-!p1@KLF1!1.99!96.92!KLF1;;chr10:51585430..51585448,+!p7@NCOA4!1.98!94.39!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.96!90.33!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.94!462.28!MXD1;;chr4:109087445..109087463,-!p1@LEF1!1.78!59.37!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.77!57.34!IKZF1;;chr3:141748010..141748030,-!p8@TFDP2!1.76!56.83!TFDP2;;chr2:148778973..148779035,+!p3@MBD5!1.74!134.47!MBD5;;chr10:111985713..111985774,+!p2@MXI1!1.72!464.31!MXI1;;chr1:47697965..47697991,-!p7@TAL1!1.71!50.24!TAL1;;chr1:43148855..43148908,+!p4@YBX1!1.70!76.62!YBX1;;chr11:47400062..47400077,-!p2@SPI1!1.70!48.71!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.62!41.10!IRF8;;chr17:45810594..45810608,+!p1@TBX21!1.62!40.60!TBX21;;chr21:34442439..34442455,+!p1@OLIG1!1.61!40.09!OLIG1;;chr3:27763807..27763822,-!p1@EOMES!1.60!38.57!EOMES;;chr12:54778471..54778528,-!p1@ZNF385A!1.59!38.06!ZNF385A;;chr11:47400032..47400043,-!p5@SPI1!1.57!36.54!SPI1;;chr12:54689552..54689574,-!p6@NFE2!1.57!36.03!NFE2;;chr5:133451294..133451310,+!p2@TCF7!1.57!36.03!TCF7;;chr9:117150254..117150271,-!p1@AKNA!1.56!93.37!AKNA;;chrX:48644984..48645005,+!p1@GATA1!1.56!35.52!GATA1;;chr10:111967345..111967422,+!p1@MXI1!1.55!537.89!MXI1;;chr1:23857325..23857416,-!p2@E2F2!1.54!39.58!E2F2;;chr17:17721569..17721574,-!p9@SREBF1!1.54!34.00!SREBF1;;chr7:50343634..50343717,+!p2@IKZF1!1.54!33.49!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.54!33.49!SP140;;chr3:187463179..187463201,-!p2@BCL6!1.53!131.43!BCL6;;chr2:68592394..68592405,+!p2@PLEK!1.53!32.98!PLEK;;chr19:13213662..13213686,-!p1@LYL1!1.52!46.69!LYL1;;chr11:47399947..47399961,-!p3@SPI1!1.52!32.48!SPI1;;chr19:13213634..13213645,-!p8@LYL1!1.50!30.45!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.48!29.43!SPI1;;chr19:16435625..16435682,+!p1@KLF2!1.47!879.91!KLF2;;chr2:192015701..192015743,-!p1@STAT4!1.47!39.07!STAT4;;chr5:176735063..176735088,-!p2@MXD3!1.46!27.91!MXD3;;chr11:111249993..111250006,-!p1@POU2AF1!1.45!27.40!POU2AF1;;chr9:135854091..135854159,+!p1@GFI1B!1.45!27.40!GFI1B;;chr19:13213555..13213568,-!p5@LYL1!1.45!26.89!LYL1;;chr7:28725715..28725727,+!p3@CREB5!1.43!30.45!CREB5;;chr6:391743..391759,+!p1@IRF4!1.40!24.36!IRF4;;chr12:54689532..54689551,-!p4@NFE2!1.39!23.34!NFE2;;chr6:108881012..108881034,+!p3@FOXO3!1.38!80.68!FOXO3;;chr10:51565239..51565263,+!p2@NCOA4!1.37!505.42!NCOA4;;chr11:47400045..47400060,-!p6@SPI1!1.37!22.33!SPI1;;chr4:185395633..185395651,-!p2@IRF2!1.36!34.51!IRF2;;chr1:23857698..23857733,-!p1@E2F2!1.35!39.07!E2F2;;chr7:28725740..28725778,+!p1@CREB5!1.34!181.67!CREB5;;chr2:192015750..192015793,-!p2@STAT4!1.34!27.91!STAT4;;chr3:63953435..63953499,+!p1@ATXN7!1.34!20.81!ATXN7;;chr20:56195474..56195506,-!p1@ZBP1!1.34!20.81!ZBP1;;chr1:25256756..25256774,-!p1@RUNX3!1.31!36.03!RUNX3;;chr3:18486354..18486377,-!p2@SATB1!1.31!24.36!SATB1;;chr6:144385698..144385742,-!p2@PLAGL1!1.31!23.34!PLAGL1;;chr12:54691711..54691725,-!p7@NFE2!1.31!19.28!NFE2;;chr1:23857128..23857141,-!p6@E2F2!1.30!18.78!E2F2;;chr11:128563948..128564003,+!p1@FLI1!1.29!216.68!FLI1;;chr5:133450365..133450444,+!p1@TCF7!1.29!83.73!TCF7;;chr20:50159198..50159299,-!p1@NFATC2!1.29!26.89!NFATC2;;chr2:231090471..231090504,+!p2@SP140!1.28!18.27!SP140;;chr1:43148792..43148849,+!p2@YBX1!1.27!66.48!YBX1;;chr1:47695003..47695042,-!p2@TAL1!1.26!17.25!TAL1;;chr12:54694738..54694749,-!p5@NFE2!1.24!16.24!NFE2;;chr13:41593425..41593480,-!p1@ELF1!1.23!98.95!ELF1;;chr16:88752889..88752921,-!p1@SNAI3!1.23!18.78!SNAI3;;chr7:149470641..149470694,-!p1@ZNF467!1.22!69.52!ZNF467;;chr2:100759010..100759035,-!p1@AFF3!1.21!15.22!AFF3;;chr1:8484007..8484061,-!p13@RERE!1.20!18.78!RERE;;chr17:38497662..38497713,+!p4@RARA!1.20!17.25!RARA;;chr12:10854646..10854658,-!p24@CSDA!1.20!14.72!CSDA;;chrX:107018836..107018862,-!p8@TSC22D3!1.20!14.72!TSC22D3;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!378.05!TSC22D3;;chr2:28618532..28618610,+!p4@FOSL2!1.19!24.86!FOSL2;;chr5:131826457..131826514,-!p1@IRF1!1.17!531.81!IRF1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.17!22.84!PCBP2;;chr9:32550965..32551031,-!p4@TOPORS!1.17!21.31!TOPORS;;chr16:3313791..3313834,+!p2@ZNF263!1.15!29.43!ZNF263;;chrX:131574281..131574293,-!p18@MBNL3!1.15!13.19!MBNL3;;chr19:50922187..50922204,+!p1@SPIB!1.15!13.19!SPIB;;chr2:231084659..231084721,-!p1@SP110!1.12!285.69!SP110;;chr9:117160738..117160782,-!p2@AKNA!1.12!50.74!AKNA;;chr7:115670804..115670825,-!p1@TFEC!1.12!12.18!TFEC;;chr17:37934365..37934387,-!p2@IKZF3!1.12!12.18!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.11!91.34!MEF2C;;chrX:106960180..106960197,-!p2@TSC22D3!1.11!45.67!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.11!16.75!IRF2;;chr2:70142189..70142223,+!p2@MXD1!1.10!83.73!MXD1;;chr12:54694686..54694697,-!p8@NFE2!1.10!11.67!NFE2;;chr12:6782377..6782382,-!p15@ZNF384!1.10!11.67!ZNF384;;chr19:56879534..56879615,+!p3@ZNF542!1.09!17.76!ZNF542;;chr5:142782823..142782854,-!p3@NR3C1!1.09!16.24!NR3C1;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.21!PRDM1;;chr20:56195525..56195556,-!p2@ZBP1!1.09!11.16!ZBP1;;chr2:208031542..208031595,-!p2@KLF7!1.08!78.65!KLF7;;chr14:75988771..75988826,+!p1@BATF!1.08!14.72!BATF;;chr17:38498594..38498661,+!p2@RARA!1.07!36.54!RARA;;chr7:64126535..64126559,+!p2@ZNF107!1.07!22.84!ZNF107;;chr10:31288398..31288455,-!p2@ZNF438!1.07!12.69!ZNF438;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.66!TAL1;;chr2:208031943..208031978,-!p5@KLF7!1.06!14.21!KLF7;;chr4:185395590..185395627,-!p3@IRF2!1.06!13.19!IRF2;;chrX:107019163..107019179,-!p7@TSC22D3!1.06!12.18!TSC22D3;;chr9:137217986..137218049,+!p3@RXRA!1.05!29.94!RXRA;;chr2:231084639..231084654,-!p2@SP110!1.05!17.25!SP110;;chr4:106068026..106068084,+!p1@TET2!1.04!91.34!TET2;;chr12:10854595..10854628,-!p7@CSDA!1.04!14.21!CSDA;;chr7:149470540..149470596,-!p2@ZNF467!1.04!13.19!ZNF467;;chr4:57522166..57522260,-!p2@HOPX!1.03!11.16!HOPX;;chr9:135853402..135853417,+!p4@GFI1B!1.03!9.64!GFI1B;;chr1:23857087..23857100,-!p8@E2F2!1.03!9.64!E2F2;;chr1:47691303..47691319,-!p5@TAL1!1.03!9.64!TAL1;;chr14:99738059..99738086,-!p2@BCL11B!1.03!9.64!BCL11B;;chr2:145277640..145277771,-!p1@ZEB2!1.02!129.91!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.01!120.77!BACH1;;chr3:71632840..71632857,-!p10@FOXP1!1.01!18.78!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.01!9.13!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.13!IKZF1;;chr8:71316021..71316068,-!p1@NCOA2!1.00!86.27!NCOA2;;chr11:128392273..128392308,-!p2@ETS1!0.99!38.06!ETS1;;chr6:15246200..15246214,+!p2@JARID2!0.99!24.86!JARID2;;chr3:71355163..71355209,-!p5@FOXP1!0.99!12.18!FOXP1;;chr17:38498402..38498445,+!p3@RARA!0.98!31.46!RARA;;chr3:187463220..187463232,-!p3@BCL6!0.98!26.39!BCL6;;chr17:37934204..37934241,-!p3@IKZF3!0.98!8.63!IKZF3;;chr6:135516877..135516900,+!p5@MYB!0.98!8.63!MYB;;chr7:50343895..50343936,+!p5@IKZF1!0.98!8.63!IKZF1;;chr19:19779619..19779670,+!p1@ZNF101!0.97!23.85!ZNF101;;chr8:67525443..67525459,-!p2@MYBL1!0.97!12.69!MYBL1;;chr2:70167296..70167306,+!p3@MXD1!0.96!12.69!MXD1;;chr19:13213954..13214021,-!p4@LYL1!0.96!8.12!LYL1;;chr5:140080022..140080042,+!p1@ZMAT2!0.95!440.97!ZMAT2;;chr6:108882109..108882173,+!p2@FOXO3!0.95!44.15!FOXO3;;chr15:60884706..60884743,-!p1@RORA!0.95!42.12!RORA;;chr19:42636586..42636607,-!p1@POU2F2!0.95!22.33!POU2F2;;chr4:38665769..38665801,+!p2@KLF3!0.94!71.55!KLF3;;chrX:70316005..70316034,+!p2@FOXO4!0.94!14.21!FOXO4;;chr4:57522513..57522548,-!p4@HOPX!0.94!7.61!HOPX;;chr6:108882175..108882186,+!p10@FOXO3!0.94!7.61!FOXO3;;chr6:108910863..108910912,+!p8@FOXO3!0.94!7.61!FOXO3;;chr17:38020392..38020477,-!p1@IKZF3!0.94!7.61!IKZF3;;chr11:16404108..16404124,-!p26@SOX6!0.94!7.61!SOX6;;chr9:88969339..88969422,-!p2@ZCCHC6!0.93!60.39!ZCCHC6;;chr6:108880956..108881011,+!p1@FOXO3!0.93!51.25!FOXO3;;chrX:107018969..107019024,-!p6@TSC22D3!0.93!10.66!TSC22D3;;chr1:67395833..67395851,+!p8@MIER1!0.93!9.13!MIER1;;chr14:65569186..65569243,-!p1@MAX!0.92!453.66!MAX;;chr4:140098339..140098392,-!p1@ELF2!0.91!61.40!ELF2;;chr10:94449703..94449718,+!p1@HHEX!0.91!28.92!HHEX;;chr12:10875658..10875708,-!p2@CSDA!0.91!16.75!CSDA;;chr1:221052776..221052799,+!p1@HLX!0.91!13.19!HLX;;chr5:88179195..88179224,-!p3@MEF2C!0.91!11.67!MEF2C;;chr11:47399920..47399931,-!p7@SPI1!0.91!7.10!SPI1;;chr14:23588242..23588262,-!p1@CEBPE!0.91!7.10!CEBPE;;chr3:141747950..141748004,-!p7@TFDP2!0.91!7.10!TFDP2;;chr9:20382446..20382493,-!p4@MLLT3!0.91!7.10!MLLT3;;chr1:47698007..47698019,-!p13@TAL1!0.91!7.10!TAL1;;chr16:68119324..68119364,+!p1@NFATC3!0.90!32.48!NFATC3;;chr10:51565156..51565167,+!p5@NCOA4!0.90!22.84!NCOA4;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.24!BACH2;;chr6:15249128..15249177,+!p4@JARID2!0.89!12.69!JARID2;;chrX:48901030..48901050,-!p4@TFE3!0.89!8.63!TFE3;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.36!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!0.88!8.12!GATA3;;chr10:111985777..111985788,+!p4@MXI1!0.88!6.60!MXI1;;chr21:34398234..34398250,+!p1@OLIG2!0.88!6.60!OLIG2;;chr2:68615063..68615089,+!p4@PLEK!0.88!6.60!PLEK;;chr4:109089901..109089930,-!p3@LEF1!0.88!6.60!LEF1;;chr4:109090075..109090095,-!p2@LEF1!0.88!6.60!LEF1;;chr4:57522598..57522664,-!p3@HOPX!0.88!6.60!HOPX;;chr7:137620650..137620677,-!p3@CREB3L2!0.88!6.60!CREB3L2;;chr2:208394817..20839483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hr6:151712673..151712709,-!p1@ZBTB2!0.30!9.64!ZBTB2;;chr6:44233297..44233330,-!p2@NFKBIE!0.30!4.06!NFKBIE;;chr19:37178482..37178520,+!p1@ZNF567!0.30!4.06!ZNF567;;chr19:8942909..8942953,-!p2@ZNF558!0.30!3.55!ZNF558;;chr4:76439649..76439662,+!p2@THAP6!0.30!3.55!THAP6;;chr19:21950332..21950356,-!p2@ZNF100!0.30!3.04!ZNF100;;chr19:2841497..2841523,+!p2@ZNF555!0.30!2.54!ZNF555;;chr10:35415735..35415756,+!p9@CREM!0.30!2.03!CREM;;chr14:103059006..103059017,+!p2@RCOR1!0.30!2.03!RCOR1;;chr1:8484294..8484307,-!p16@RERE!0.30!2.03!RERE;;chr1:211432872..211432883,+!p7@RCOR3!0.30!1.52!RCOR3;;chr1:41157641..41157665,+!p7@NFYC!0.30!1.52!NFYC;;chr14:75746722..75746777,+!p2@FOS!0.30!1.52!FOS;;chr4:26321361..26321377,+!p6@RBPJ!0.30!1.52!RBPJ;;chr2:145277632..145277638,-!p17@ZEB2!0.30!1.01!ZEB2;;chr2:145277792..145277808,-!p15@ZEB2!0.30!1.01!ZEB2;;chr2:191885737..191885750,-!p4@STAT1!0.30!1.01!STAT1;;chr2:60781148..60781159,-!p8@BCL11A!0.30!1.01!BCL11A;;chr2:61108217..61108242,+!p9@REL!0.30!1.01!REL;;chr2:70166156..70166179,+!p4@MXD1!0.30!1.01!MXD1;;chr3:128205801..128205819,-!p6@GATA2!0.30!1.01!GATA2;;chr3:141121820..141121838,+!p9@ZBTB38!0.30!1.01!ZBTB38;;chr3:21792631..21792665,-!p3@ZNF385D!0.30!1.01!ZNF385D;;chr3:21792682..21792720,-!p1@ZNF385D!0.30!1.01!ZNF385D;;chr3:27764190..27764208,-!p2@EOMES!0.30!1.01!EOMES;;chr3:63953415..63953430,+!p15@ATXN7!0.30!1.01!ATXN7;;chr3:71409904..71409927,-!p46@FOXP1!0.30!1.01!FOXP1;;chr4:109086281..109086319,-!p9@LEF1!0.30!1.01!LEF1;;chr4:109087885..109087899,-!p23@LEF1!0.30!1.01!LEF1;;chr4:109089436..109089456,-!p22@LEF1!0.30!1.01!LEF1;;chr4:109089573..109089585,-!p8@LEF1!0.30!1.01!LEF1;;chr4:109090106..109090124,-!p10@LEF1!0.30!1.01!LEF1;;chr14:75746781..75746799,+!p6@FOS!0.30!1.01!FOS;;chr14:89960518..89960534,-!p23@FOXN3!0.30!1.01!FOXN3;;chr14:99738138..99738163,-!p1@BCL11B!0.30!1.01!BCL11B;;chr15:90545434..90545449,+!p9@ZNF710!0.30!1.01!ZNF710;;chr17:36871943..36871947,+!p8@MLLT6!0.30!1.01!MLLT6;;chr17:37934188..37934202,-!p8@IKZF3!0.30!1.01!IKZF3;;chr17:40441354..40441410,+!p2@STAT5A!0.30!1.01!STAT5A;;chr17:40540591..40540600,-!p3@STAT3!0.30!1.01!STAT3;;chr17:41738709..41738733,-!p3@MEOX1!0.30!1.01!MEOX1;;chr17:42295682..42295731,-!p17@UBTF!0.30!1.01!UBTF;;chr17:45810816..45810838,+!p2@TBX21!0.30!1.01!TBX21;;chr18:42260861..42260882,+!p5@SETBP1!0.30!1.01!SETBP1;;chr19:12267577..12267593,-!p3@ZNF625!0.30!1.01!ZNF625;;chr19:20959142..20959151,+!p2@ZNF66P!0.30!1.01!ZNF66P;;chr19:3576938..3576962,+!p9@HMG20B!0.30!1.01!HMG20B;;chr19:38085739..38085762,+!p3@ZNF540!0.30!1.01!ZNF540;;chr19:38183138..38183157,-!p2@ZNF781!0.30!1.01!ZNF781;;chr19:56879625..56879636,+!p5@ZNF542!0.30!1.01!ZNF542;;chr1:114301553..114301576,-!p6@PHTF1!0.30!1.01!PHTF1;;chr1:151798546..151798590,-!p2@RORC!0.30!1.01!RORC;;chr1:151798601..151798617,-!p3@RORC!0.30!1.01!RORC;;chr1:25256439..25256476,-!p3@RUNX3!0.30!1.01!RUNX3;;chr1:26697189..26697205,-!p2@ZNF683!0.30!1.01!ZNF683;;chr1:61542891..61542920,+!p12@NFIA!0.30!1.01!NFIA;;chr1:61542922..61542955,+!p10@NFIA!0.30!1.01!NFIA;;chr20:56195449..56195459,-!p4@ZBP1!0.30!1.01!ZBP1;;chr9:128509878..128509902,+!p5@PBX3!0.30!1.01!PBX3;;chrX:118740008..118740045,-!p3@NKRF!0.30!1.01!NKRF;;chrX:131623967..131623978,-!p11@MBNL3!0.30!1.01!MBNL3;;chrX:107019181..107019193,-!p10@TSC22D3!0.30!1.01!TSC22D3;;chr9:94173479..94173486,-!p8@NFIL3!0.30!1.01!NFIL3;;chr9:20621834..20621884,-!p5@MLLT3!0.30!1.01!MLLT3;;chr10:135121763..135121783,+!p5@ZNF511!0.30!1.01!ZNF511;;chr10:21822967..21822980,+!p12@MLLT10!0.30!1.01!MLLT10;;chr10:31288329..31288353,-!p7@ZNF438!0.30!1.01!ZNF438;;chr10:51575814..51575835,+!p8@NCOA4!0.30!1.01!NCOA4;;chr10:64134045..64134083,+!p3@ZNF365!0.30!1.01!ZNF365;;chr10:98591637..98591643,+!p8@LCOR!0.30!1.01!LCOR;; | |expression_enrichment_score=chr12:54694653..54694672,-!p2@NFE2!2.80!623.65!NFE2;;chr11:47400078..47400106,-!p1@SPI1!2.73!539.42!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.61!410.53!PLEK;;chrX:131623044..131623089,-!p1@MBNL3!2.51!1254.41!MBNL3;;chrX:131623026..131623039,-!p5@MBNL3!2.40!252.20!MBNL3;;chrX:131622958..131622978,-!p3@MBNL3!2.39!307.01!MBNL3;;chr12:54694758..54694805,-!p1@NFE2!2.37!277.57!NFE2;;chrX:131622988..131623006,-!p8@MBNL3!2.29!194.86!MBNL3;;chr10:51572339..51572376,+!p4@NCOA4!2.23!365.87!NCOA4;;chrX:70315688..70315709,+!p1@FOXO4!2.20!350.14!FOXO4;;chr12:54694807..54694832,-!p3@NFE2!2.19!154.77!NFE2;;chr7:28220506..28220552,-!p3@JAZF1!2.18!149.70!JAZF1;;chr10:51572408..51572454,+!p3@NCOA4!2.13!743.92!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.11!138.03!LYL1;;chr7:28220354..28220441,-!p1@JAZF1!2.02!1494.43!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!2.01!102.00!GATA2;;chr19:12998003..12998021,-!p1@KLF1!1.99!96.92!KLF1;;chr10:51585430..51585448,+!p7@NCOA4!1.98!94.39!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.96!90.33!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.94!462.28!MXD1;;chr4:109087445..109087463,-!p1@LEF1!1.78!59.37!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.77!57.34!IKZF1;;chr3:141748010..141748030,-!p8@TFDP2!1.76!56.83!TFDP2;;chr2:148778973..148779035,+!p3@MBD5!1.74!134.47!MBD5;;chr10:111985713..111985774,+!p2@MXI1!1.72!464.31!MXI1;;chr1:47697965..47697991,-!p7@TAL1!1.71!50.24!TAL1;;chr1:43148855..43148908,+!p4@YBX1!1.70!76.62!YBX1;;chr11:47400062..47400077,-!p2@SPI1!1.70!48.71!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.62!41.10!IRF8;;chr17:45810594..45810608,+!p1@TBX21!1.62!40.60!TBX21;;chr21:34442439..34442455,+!p1@OLIG1!1.61!40.09!OLIG1;;chr3:27763807..27763822,-!p1@EOMES!1.60!38.57!EOMES;;chr12:54778471..54778528,-!p1@ZNF385A!1.59!38.06!ZNF385A;;chr11:47400032..47400043,-!p5@SPI1!1.57!36.54!SPI1;;chr12:54689552..54689574,-!p6@NFE2!1.57!36.03!NFE2;;chr5:133451294..133451310,+!p2@TCF7!1.57!36.03!TCF7;;chr9:117150254..117150271,-!p1@AKNA!1.56!93.37!AKNA;;chrX:48644984..48645005,+!p1@GATA1!1.56!35.52!GATA1;;chr10:111967345..111967422,+!p1@MXI1!1.55!537.89!MXI1;;chr1:23857325..23857416,-!p2@E2F2!1.54!39.58!E2F2;;chr17:17721569..17721574,-!p9@SREBF1!1.54!34.00!SREBF1;;chr7:50343634..50343717,+!p2@IKZF1!1.54!33.49!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.54!33.49!SP140;;chr3:187463179..187463201,-!p2@BCL6!1.53!131.43!BCL6;;chr2:68592394..68592405,+!p2@PLEK!1.53!32.98!PLEK;;chr19:13213662..13213686,-!p1@LYL1!1.52!46.69!LYL1;;chr11:47399947..47399961,-!p3@SPI1!1.52!32.48!SPI1;;chr19:13213634..13213645,-!p8@LYL1!1.50!30.45!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.48!29.43!SPI1;;chr19:16435625..16435682,+!p1@KLF2!1.47!879.91!KLF2;;chr2:192015701..192015743,-!p1@STAT4!1.47!39.07!STAT4;;chr5:176735063..176735088,-!p2@MXD3!1.46!27.91!MXD3;;chr11:111249993..111250006,-!p1@POU2AF1!1.45!27.40!POU2AF1;;chr9:135854091..135854159,+!p1@GFI1B!1.45!27.40!GFI1B;;chr19:13213555..13213568,-!p5@LYL1!1.45!26.89!LYL1;;chr7:28725715..28725727,+!p3@CREB5!1.43!30.45!CREB5;;chr6:391743..391759,+!p1@IRF4!1.40!24.36!IRF4;;chr12:54689532..54689551,-!p4@NFE2!1.39!23.34!NFE2;;chr6:108881012..108881034,+!p3@FOXO3!1.38!80.68!FOXO3;;chr10:51565239..51565263,+!p2@NCOA4!1.37!505.42!NCOA4;;chr11:47400045..47400060,-!p6@SPI1!1.37!22.33!SPI1;;chr4:185395633..185395651,-!p2@IRF2!1.36!34.51!IRF2;;chr1:23857698..23857733,-!p1@E2F2!1.35!39.07!E2F2;;chr7:28725740..28725778,+!p1@CREB5!1.34!181.67!CREB5;;chr2:192015750..192015793,-!p2@STAT4!1.34!27.91!STAT4;;chr3:63953435..63953499,+!p1@ATXN7!1.34!20.81!ATXN7;;chr20:56195474..56195506,-!p1@ZBP1!1.34!20.81!ZBP1;;chr1:25256756..25256774,-!p1@RUNX3!1.31!36.03!RUNX3;;chr3:18486354..18486377,-!p2@SATB1!1.31!24.36!SATB1;;chr6:144385698..144385742,-!p2@PLAGL1!1.31!23.34!PLAGL1;;chr12:54691711..54691725,-!p7@NFE2!1.31!19.28!NFE2;;chr1:23857128..23857141,-!p6@E2F2!1.30!18.78!E2F2;;chr11:128563948..128564003,+!p1@FLI1!1.29!216.68!FLI1;;chr5:133450365..133450444,+!p1@TCF7!1.29!83.73!TCF7;;chr20:50159198..50159299,-!p1@NFATC2!1.29!26.89!NFATC2;;chr2:231090471..231090504,+!p2@SP140!1.28!18.27!SP140;;chr1:43148792..43148849,+!p2@YBX1!1.27!66.48!YBX1;;chr1:47695003..47695042,-!p2@TAL1!1.26!17.25!TAL1;;chr12:54694738..54694749,-!p5@NFE2!1.24!16.24!NFE2;;chr13:41593425..41593480,-!p1@ELF1!1.23!98.95!ELF1;;chr16:88752889..88752921,-!p1@SNAI3!1.23!18.78!SNAI3;;chr7:149470641..149470694,-!p1@ZNF467!1.22!69.52!ZNF467;;chr2:100759010..100759035,-!p1@AFF3!1.21!15.22!AFF3;;chr1:8484007..8484061,-!p13@RERE!1.20!18.78!RERE;;chr17:38497662..38497713,+!p4@RARA!1.20!17.25!RARA;;chr12:10854646..10854658,-!p24@CSDA!1.20!14.72!CSDA;;chrX:107018836..107018862,-!p8@TSC22D3!1.20!14.72!TSC22D3;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!378.05!TSC22D3;;chr2:28618532..28618610,+!p4@FOSL2!1.19!24.86!FOSL2;;chr5:131826457..131826514,-!p1@IRF1!1.17!531.81!IRF1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.17!22.84!PCBP2;;chr9:32550965..32551031,-!p4@TOPORS!1.17!21.31!TOPORS;;chr16:3313791..3313834,+!p2@ZNF263!1.15!29.43!ZNF263;;chrX:131574281..131574293,-!p18@MBNL3!1.15!13.19!MBNL3;;chr19:50922187..50922204,+!p1@SPIB!1.15!13.19!SPIB;;chr2:231084659..231084721,-!p1@SP110!1.12!285.69!SP110;;chr9:117160738..117160782,-!p2@AKNA!1.12!50.74!AKNA;;chr7:115670804..115670825,-!p1@TFEC!1.12!12.18!TFEC;;chr17:37934365..37934387,-!p2@IKZF3!1.12!12.18!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.11!91.34!MEF2C;;chrX:106960180..106960197,-!p2@TSC22D3!1.11!45.67!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.11!16.75!IRF2;;chr2:70142189..70142223,+!p2@MXD1!1.10!83.73!MXD1;;chr12:54694686..54694697,-!p8@NFE2!1.10!11.67!NFE2;;chr12:6782377..6782382,-!p15@ZNF384!1.10!11.67!ZNF384;;chr19:56879534..56879615,+!p3@ZNF542!1.09!17.76!ZNF542;;chr5:142782823..142782854,-!p3@NR3C1!1.09!16.24!NR3C1;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.21!PRDM1;;chr20:56195525..56195556,-!p2@ZBP1!1.09!11.16!ZBP1;;chr2:208031542..208031595,-!p2@KLF7!1.08!78.65!KLF7;;chr14:75988771..75988826,+!p1@BATF!1.08!14.72!BATF;;chr17:38498594..38498661,+!p2@RARA!1.07!36.54!RARA;;chr7:64126535..64126559,+!p2@ZNF107!1.07!22.84!ZNF107;;chr10:31288398..31288455,-!p2@ZNF438!1.07!12.69!ZNF438;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.66!TAL1;;chr2:208031943..208031978,-!p5@KLF7!1.06!14.21!KLF7;;chr4:185395590..185395627,-!p3@IRF2!1.06!13.19!IRF2;;chrX:107019163..107019179,-!p7@TSC22D3!1.06!12.18!TSC22D3;;chr9:137217986..137218049,+!p3@RXRA!1.05!29.94!RXRA;;chr2:231084639..231084654,-!p2@SP110!1.05!17.25!SP110;;chr4:106068026..106068084,+!p1@TET2!1.04!91.34!TET2;;chr12:10854595..10854628,-!p7@CSDA!1.04!14.21!CSDA;;chr7:149470540..149470596,-!p2@ZNF467!1.04!13.19!ZNF467;;chr4:57522166..57522260,-!p2@HOPX!1.03!11.16!HOPX;;chr9:135853402..135853417,+!p4@GFI1B!1.03!9.64!GFI1B;;chr1:23857087..23857100,-!p8@E2F2!1.03!9.64!E2F2;;chr1:47691303..47691319,-!p5@TAL1!1.03!9.64!TAL1;;chr14:99738059..99738086,-!p2@BCL11B!1.03!9.64!BCL11B;;chr2:145277640..145277771,-!p1@ZEB2!1.02!129.91!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.01!120.77!BACH1;;chr3:71632840..71632857,-!p10@FOXP1!1.01!18.78!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.01!9.13!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.13!IKZF1;;chr8:71316021..71316068,-!p1@NCOA2!1.00!86.27!NCOA2;;chr11:128392273..128392308,-!p2@ETS1!0.99!38.06!ETS1;;chr6:15246200..15246214,+!p2@JARID2!0.99!24.86!JARID2;;chr3:71355163..71355209,-!p5@FOXP1!0.99!12.18!FOXP1;;chr17:38498402..38498445,+!p3@RARA!0.98!31.46!RARA;;chr3:187463220..187463232,-!p3@BCL6!0.98!26.39!BCL6;;chr17:37934204..37934241,-!p3@IKZF3!0.98!8.63!IKZF3;;chr6:135516877..135516900,+!p5@MYB!0.98!8.63!MYB;;chr7:50343895..50343936,+!p5@IKZF1!0.98!8.63!IKZF1;;chr19:19779619..19779670,+!p1@ZNF101!0.97!23.85!ZNF101;;chr8:67525443..67525459,-!p2@MYBL1!0.97!12.69!MYBL1;;chr2:70167296..70167306,+!p3@MXD1!0.96!12.69!MXD1;;chr19:13213954..13214021,-!p4@LYL1!0.96!8.12!LYL1;;chr5:140080022..140080042,+!p1@ZMAT2!0.95!440.97!ZMAT2;;chr6:108882109..108882173,+!p2@FOXO3!0.95!44.15!FOXO3;;chr15:60884706..60884743,-!p1@RORA!0.95!42.12!RORA;;chr19:42636586..42636607,-!p1@POU2F2!0.95!22.33!POU2F2;;chr4:38665769..38665801,+!p2@KLF3!0.94!71.55!KLF3;;chrX:70316005..70316034,+!p2@FOXO4!0.94!14.21!FOXO4;;chr4:57522513..57522548,-!p4@HOPX!0.94!7.61!HOPX;;chr6:108882175..108882186,+!p10@FOXO3!0.94!7.61!FOXO3;;chr6:108910863..108910912,+!p8@FOXO3!0.94!7.61!FOXO3;;chr17:38020392..38020477,-!p1@IKZF3!0.94!7.61!IKZF3;;chr11:16404108..16404124,-!p26@SOX6!0.94!7.61!SOX6;;chr9:88969339..88969422,-!p2@ZCCHC6!0.93!60.39!ZCCHC6;;chr6:108880956..108881011,+!p1@FOXO3!0.93!51.25!FOXO3;;chrX:107018969..107019024,-!p6@TSC22D3!0.93!10.66!TSC22D3;;chr1:67395833..67395851,+!p8@MIER1!0.93!9.13!MIER1;;chr14:65569186..65569243,-!p1@MAX!0.92!453.66!MAX;;chr4:140098339..140098392,-!p1@ELF2!0.91!61.40!ELF2;;chr10:94449703..94449718,+!p1@HHEX!0.91!28.92!HHEX;;chr12:10875658..10875708,-!p2@CSDA!0.91!16.75!CSDA;;chr1:221052776..221052799,+!p1@HLX!0.91!13.19!HLX;;chr5:88179195..88179224,-!p3@MEF2C!0.91!11.67!MEF2C;;chr11:47399920..47399931,-!p7@SPI1!0.91!7.10!SPI1;;chr14:23588242..23588262,-!p1@CEBPE!0.91!7.10!CEBPE;;chr3:141747950..141748004,-!p7@TFDP2!0.91!7.10!TFDP2;;chr9:20382446..20382493,-!p4@MLLT3!0.91!7.10!MLLT3;;chr1:47698007..47698019,-!p13@TAL1!0.91!7.10!TAL1;;chr16:68119324..68119364,+!p1@NFATC3!0.90!32.48!NFATC3;;chr10:51565156..51565167,+!p5@NCOA4!0.90!22.84!NCOA4;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.24!BACH2;;chr6:15249128..15249177,+!p4@JARID2!0.89!12.69!JARID2;;chrX:48901030..48901050,-!p4@TFE3!0.89!8.63!TFE3;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.36!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!0.88!8.12!GATA3;;chr10:111985777..111985788,+!p4@MXI1!0.88!6.60!MXI1;;chr21:34398234..34398250,+!p1@OLIG2!0.88!6.60!OLIG2;;chr2:68615063..68615089,+!p4@PLEK!0.88!6.60!PLEK;;chr4:109089901..109089930,-!p3@LEF1!0.88!6.60!LEF1;;chr4:109090075..109090095,-!p2@LEF1!0.88!6.60!LEF1;;chr4:57522598..57522664,-!p3@HOPX!0.88!6.60!HOPX;;chr7:137620650..137620677,-!p3@CREB3L2!0.88!6.60!CREB3L2;;chr2:208394817..20839483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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12179-129A1 | |id=FF:12179-129A1 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0000281 | ||
|is_obsolete= | |||
|library_id=CNhs11675!RDhi10000 | |||
|library_id_phase_based=2:CNhs11675 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12179 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12179 | |||
|name=Whole blood (ribopure), donor090309, donation1 | |name=Whole blood (ribopure), donor090309, donation1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11675,LSID808,release008,COMPLETED | |profile_hcage=CNhs11675,LSID808,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.548664287594043,0.089121113667536,0,0,0.178242227335072,0,0.0179241972486862,0.401804113981,0.332051476584464,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.304252466245884,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.274413641679125,0,0,0,0,0,0,0,0,0.127911212010107,0,0,0,0.78350882712214,0,-0.0442810476473271,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.178242227335072,0,0,0.548664287594043,0,0,0,0.221675690915074,0.089121113667536,0,0,0,0,0,-0.276659975727825,0,0,0,-0.329409021142657,-0.211197402695869,0,0,0.152126233122942,0,0.0802068760973659,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00725248025492485,0,0,0,0.116468312117559,0.347399953274288,0,0,-0.0364132912814638,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=5.2 | |rna_weight_ug=5.2 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=GATA6:4.20543272298;ETS1,2:2.49966190304;SPI1:2.39286413303;SPIB:2.3460863717;ELF1,2,4:2.3290932897;FOXO1,3,4:2.15317458973;NANOG{mouse}:2.07887539572;T:2.03156172799;RUNX1..3:2.00524380578;FOXD3:1.98139227345;FOX{D1,D2}:1.88966458868;DMAP1_NCOR{1,2}_SMARC:1.79881857898;FOXP3:1.68664566568;TLX2:1.63088489865;FOX{F1,F2,J1}:1.58851372852;SPZ1:1.58299606607;STAT5{A,B}:1.4268013472;IRF7:1.40310251564;STAT1,3:1.34478428014;CEBPA,B_DDIT3:1.30346838132;ZNF148:1.25476473459;IRF1,2:1.11624146203;PAX3,7:1.09027965;PAX2:1.08083733554;TFAP4:1.07415046324;TGIF1:1.05845323794;EP300:1.00072596375;FOXN1:0.996717209766;STAT2,4,6:0.936162037659;HMX1:0.890594385202;RXRA_VDR{dimer}:0.853792038974;POU5F1:0.801682200415;FOX{I1,J2}:0.79479946596;POU2F1..3:0.730666895484;SMAD1..7,9:0.70171510068;PDX1:0.660999780983;IKZF2:0.660019510277;NFIX:0.650269383101;TFCP2:0.622749130761;NFATC1..3:0.618465627182;MYOD1:0.596914756869;NFE2L2:0.57187386358;FOXA2:0.565507950529;SREBF1,2:0.529940339357;NKX3-2:0.528160348758;MYFfamily:0.481123245062;NR1H4:0.469789747113;CDX1,2,4:0.450778769767;RFX2..5_RFXANK_RFXAP:0.41493197828;RBPJ:0.395958188343;ZNF423:0.383120642532;ZEB1:0.379554858702;NKX2-2,8:0.367883838197;RREB1:0.334703586046;NFIL3:0.321082386238;ATF5_CREB3:0.281263951434;ZNF238:0.258714300331;CRX:0.257326644057;ALX1:0.255775977009;MYB:0.251691641234;HBP1_HMGB_SSRP1_UBTF:0.227180516158;TOPORS:0.224859288676;MAZ:0.21116844939;HLF:0.206583558206;MZF1:0.183862574288;PPARG:0.166955680183;CUX2:0.154393993749;EVI1:0.14982814796;NFE2L1:0.145520126327;NFKB1_REL_RELA:0.121889260462;SNAI1..3:0.0918896797872;DBP:0.0640179160343;TAL1_TCF{3,4,12}:0.0607260992653;GATA4:0.0522574330687;NFE2:0.051221580275;BPTF:0.0399317053532;BREu{core}:0.0246247781541;LMO2:0.00259817871074;NKX3-1:-0.00815209023931;SRF:-0.022138435143;CREB1:-0.156681720341;XCPE1{core}:-0.19458065194;SP1:-0.199823027826;OCT4_SOX2{dimer}:-0.252044971947;GLI1..3:-0.271889886513;ELK1,4_GABP{A,B1}:-0.290993426519;RORA:-0.367434145004;AIRE:-0.378574400158;REST:-0.397188224137;ATF2:-0.40331534945;BACH2:-0.429155957581;POU1F1:-0.434785459468;KLF4:-0.444941626349;NR6A1:-0.45112124262;FOSL2:-0.466027493549;LEF1_TCF7_TCF7L1,2:-0.474828010985;ADNP_IRX_SIX_ZHX:-0.501610253892;PRDM1:-0.524321543929;ALX4:-0.526867332509;FOXP1:-0.538632863987;NHLH1,2:-0.552177051943;RFX1:-0.552794588628;PATZ1:-0.563540520522;TBX4,5:-0.58524976347;HIF1A:-0.606790121058;ZFP161:-0.60949432679;NR5A1,2:-0.613302111674;NKX2-1,4:-0.615457679952;ESR1:-0.61621362581;ATF4:-0.634162534144;MTE{core}:-0.640633462821;HMGA1,2:-0.662270171222;PRRX1,2:-0.667884289286;MAFB:-0.669008151875;FOS_FOS{B,L1}_JUN{B,D}:-0.674627346755;NR3C1:-0.675070864261;MEF2{A,B,C,D}:-0.69921139241;HNF4A_NR2F1,2:-0.708128351617;GTF2I:-0.72855156502;HOXA9_MEIS1:-0.739541768574;ZNF143:-0.744329727862;AR:-0.750277652942;JUN:-0.764445451451;NRF1:-0.767069813223;HNF1A:-0.788404042611;MTF1:-0.806160735051;TLX1..3_NFIC{dimer}:-0.807964878726;GCM1,2:-0.845721466856;NFY{A,B,C}:-0.8496969848;YY1:-0.859835269009;XBP1:-0.907281864773;SOX2:-0.91539355389;HIC1:-0.928444167161;TFAP2B:-0.931741424613;ARID5B:-0.943111902577;FOXQ1:-0.954901891478;EGR1..3:-0.957673328706;EN1,2:-0.959980441753;ZBTB16:-0.962942071864;PBX1:-0.966629652029;TFAP2{A,C}:-0.970473189652;PAX5:-0.973426752617;TBP:-0.991830672513;NKX6-1,2:-1.02626510605;MED-1{core}:-1.0457392823;PAX6:-1.04711237438;RXR{A,B,G}:-1.06376789977;PITX1..3:-1.08490517988;NKX2-3_NKX2-5:-1.09821258743;E2F1..5:-1.17724581771;POU6F1:-1.20186720142;EBF1:-1.22701576227;NANOG:-1.23718586438;HES1:-1.24190591592;SOX{8,9,10}:-1.25281838251;VSX1,2:-1.29591918577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.29616990421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2996099046;MYBL2:-1.30235895254;GZF1:-1.32555586701;TP53:-1.34784928939;ZBTB6:-1.35495840394;GFI1:-1.35711692315;PAX4:-1.37051181095;UFEwm:-1.37350188532;AHR_ARNT_ARNT2:-1.38814729929;SOX5:-1.39096089032;LHX3,4:-1.4003741195;HAND1,2:-1.46573890415;FOXL1:-1.56511507205;FOXM1:-1.62844783121;GFI1B:-1.62872407897;POU3F1..4:-1.63000470793;ZNF384:-1.63416704945;bHLH_family:-1.66820134364;TEAD1:-1.6936194536;PAX1,9:-1.74042500615;HSF1,2:-1.78247307525;PAX8:-1.81547346415;ATF6:-1.82771463283;ONECUT1,2:-1.85555539974;HOX{A5,B5}:-1.89440459227;HOX{A6,A7,B6,B7}:-1.93401594619;ESRRA:-1.96968137692;ZIC1..3:-1.96989058151;GTF2A1,2:-1.97476705869;TFDP1:-2.09033274234;SOX17:-2.09213753715;HOX{A4,D4}:-2.33493553979;TEF:-2.60428047899;CDC5L:-2.61308799761;IKZF1:-2.85582762568 | |top_motifs=GATA6:4.20543272298;ETS1,2:2.49966190304;SPI1:2.39286413303;SPIB:2.3460863717;ELF1,2,4:2.3290932897;FOXO1,3,4:2.15317458973;NANOG{mouse}:2.07887539572;T:2.03156172799;RUNX1..3:2.00524380578;FOXD3:1.98139227345;FOX{D1,D2}:1.88966458868;DMAP1_NCOR{1,2}_SMARC:1.79881857898;FOXP3:1.68664566568;TLX2:1.63088489865;FOX{F1,F2,J1}:1.58851372852;SPZ1:1.58299606607;STAT5{A,B}:1.4268013472;IRF7:1.40310251564;STAT1,3:1.34478428014;CEBPA,B_DDIT3:1.30346838132;ZNF148:1.25476473459;IRF1,2:1.11624146203;PAX3,7:1.09027965;PAX2:1.08083733554;TFAP4:1.07415046324;TGIF1:1.05845323794;EP300:1.00072596375;FOXN1:0.996717209766;STAT2,4,6:0.936162037659;HMX1:0.890594385202;RXRA_VDR{dimer}:0.853792038974;POU5F1:0.801682200415;FOX{I1,J2}:0.79479946596;POU2F1..3:0.730666895484;SMAD1..7,9:0.70171510068;PDX1:0.660999780983;IKZF2:0.660019510277;NFIX:0.650269383101;TFCP2:0.622749130761;NFATC1..3:0.618465627182;MYOD1:0.596914756869;NFE2L2:0.57187386358;FOXA2:0.565507950529;SREBF1,2:0.529940339357;NKX3-2:0.528160348758;MYFfamily:0.481123245062;NR1H4:0.469789747113;CDX1,2,4:0.450778769767;RFX2..5_RFXANK_RFXAP:0.41493197828;RBPJ:0.395958188343;ZNF423:0.383120642532;ZEB1:0.379554858702;NKX2-2,8:0.367883838197;RREB1:0.334703586046;NFIL3:0.321082386238;ATF5_CREB3:0.281263951434;ZNF238:0.258714300331;CRX:0.257326644057;ALX1:0.255775977009;MYB:0.251691641234;HBP1_HMGB_SSRP1_UBTF:0.227180516158;TOPORS:0.224859288676;MAZ:0.21116844939;HLF:0.206583558206;MZF1:0.183862574288;PPARG:0.166955680183;CUX2:0.154393993749;EVI1:0.14982814796;NFE2L1:0.145520126327;NFKB1_REL_RELA:0.121889260462;SNAI1..3:0.0918896797872;DBP:0.0640179160343;TAL1_TCF{3,4,12}:0.0607260992653;GATA4:0.0522574330687;NFE2:0.051221580275;BPTF:0.0399317053532;BREu{core}:0.0246247781541;LMO2:0.00259817871074;NKX3-1:-0.00815209023931;SRF:-0.022138435143;CREB1:-0.156681720341;XCPE1{core}:-0.19458065194;SP1:-0.199823027826;OCT4_SOX2{dimer}:-0.252044971947;GLI1..3:-0.271889886513;ELK1,4_GABP{A,B1}:-0.290993426519;RORA:-0.367434145004;AIRE:-0.378574400158;REST:-0.397188224137;ATF2:-0.40331534945;BACH2:-0.429155957581;POU1F1:-0.434785459468;KLF4:-0.444941626349;NR6A1:-0.45112124262;FOSL2:-0.466027493549;LEF1_TCF7_TCF7L1,2:-0.474828010985;ADNP_IRX_SIX_ZHX:-0.501610253892;PRDM1:-0.524321543929;ALX4:-0.526867332509;FOXP1:-0.538632863987;NHLH1,2:-0.552177051943;RFX1:-0.552794588628;PATZ1:-0.563540520522;TBX4,5:-0.58524976347;HIF1A:-0.606790121058;ZFP161:-0.60949432679;NR5A1,2:-0.613302111674;NKX2-1,4:-0.615457679952;ESR1:-0.61621362581;ATF4:-0.634162534144;MTE{core}:-0.640633462821;HMGA1,2:-0.662270171222;PRRX1,2:-0.667884289286;MAFB:-0.669008151875;FOS_FOS{B,L1}_JUN{B,D}:-0.674627346755;NR3C1:-0.675070864261;MEF2{A,B,C,D}:-0.69921139241;HNF4A_NR2F1,2:-0.708128351617;GTF2I:-0.72855156502;HOXA9_MEIS1:-0.739541768574;ZNF143:-0.744329727862;AR:-0.750277652942;JUN:-0.764445451451;NRF1:-0.767069813223;HNF1A:-0.788404042611;MTF1:-0.806160735051;TLX1..3_NFIC{dimer}:-0.807964878726;GCM1,2:-0.845721466856;NFY{A,B,C}:-0.8496969848;YY1:-0.859835269009;XBP1:-0.907281864773;SOX2:-0.91539355389;HIC1:-0.928444167161;TFAP2B:-0.931741424613;ARID5B:-0.943111902577;FOXQ1:-0.954901891478;EGR1..3:-0.957673328706;EN1,2:-0.959980441753;ZBTB16:-0.962942071864;PBX1:-0.966629652029;TFAP2{A,C}:-0.970473189652;PAX5:-0.973426752617;TBP:-0.991830672513;NKX6-1,2:-1.02626510605;MED-1{core}:-1.0457392823;PAX6:-1.04711237438;RXR{A,B,G}:-1.06376789977;PITX1..3:-1.08490517988;NKX2-3_NKX2-5:-1.09821258743;E2F1..5:-1.17724581771;POU6F1:-1.20186720142;EBF1:-1.22701576227;NANOG:-1.23718586438;HES1:-1.24190591592;SOX{8,9,10}:-1.25281838251;VSX1,2:-1.29591918577;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.29616990421;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.2996099046;MYBL2:-1.30235895254;GZF1:-1.32555586701;TP53:-1.34784928939;ZBTB6:-1.35495840394;GFI1:-1.35711692315;PAX4:-1.37051181095;UFEwm:-1.37350188532;AHR_ARNT_ARNT2:-1.38814729929;SOX5:-1.39096089032;LHX3,4:-1.4003741195;HAND1,2:-1.46573890415;FOXL1:-1.56511507205;FOXM1:-1.62844783121;GFI1B:-1.62872407897;POU3F1..4:-1.63000470793;ZNF384:-1.63416704945;bHLH_family:-1.66820134364;TEAD1:-1.6936194536;PAX1,9:-1.74042500615;HSF1,2:-1.78247307525;PAX8:-1.81547346415;ATF6:-1.82771463283;ONECUT1,2:-1.85555539974;HOX{A5,B5}:-1.89440459227;HOX{A6,A7,B6,B7}:-1.93401594619;ESRRA:-1.96968137692;ZIC1..3:-1.96989058151;GTF2A1,2:-1.97476705869;TFDP1:-2.09033274234;SOX17:-2.09213753715;HOX{A4,D4}:-2.33493553979;TEF:-2.60428047899;CDC5L:-2.61308799761;IKZF1:-2.85582762568 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12179-129A1;search_select_hide=table117:FF:12179-129A1 | |||
}} | }} | ||
Latest revision as of 18:33, 4 June 2020
| Name: | Whole blood (ribopure), donor090309, donation1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11675,RDhi10000 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11675
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11675
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.177 |
| 10 | 10 | 0.102 |
| 100 | 100 | 0.513 |
| 101 | 101 | 0.276 |
| 102 | 102 | 0.551 |
| 103 | 103 | 0.0927 |
| 104 | 104 | 0.709 |
| 105 | 105 | 0.206 |
| 106 | 106 | 0.0465 |
| 107 | 107 | 0.728 |
| 108 | 108 | 0.81 |
| 109 | 109 | 0.112 |
| 11 | 11 | 0.0905 |
| 110 | 110 | 0.365 |
| 111 | 111 | 0.533 |
| 112 | 112 | 0.0825 |
| 113 | 113 | 0.201 |
| 114 | 114 | 0.0583 |
| 115 | 115 | 0.31 |
| 116 | 116 | 0.959 |
| 117 | 117 | 0.0444 |
| 118 | 118 | 0.319 |
| 119 | 119 | 0.474 |
| 12 | 12 | 0.364 |
| 120 | 120 | 0.586 |
| 121 | 121 | 0.703 |
| 122 | 122 | 0.238 |
| 123 | 123 | 0.267 |
| 124 | 124 | 0.0311 |
| 125 | 125 | 0.14 |
| 126 | 126 | 0.217 |
| 127 | 127 | 0.218 |
| 128 | 128 | 0.0346 |
| 129 | 129 | 0.593 |
| 13 | 13 | 0.864 |
| 130 | 130 | 0.607 |
| 131 | 131 | 0.854 |
| 132 | 132 | 0.536 |
| 133 | 133 | 0.317 |
| 134 | 134 | 0.871 |
| 135 | 135 | 0.366 |
| 136 | 136 | 0.893 |
| 137 | 137 | 0.00644 |
| 138 | 138 | 0.0777 |
| 139 | 139 | 0.0302 |
| 14 | 14 | 0.165 |
| 140 | 140 | 0.356 |
| 141 | 141 | 0.502 |
| 142 | 142 | 0.983 |
| 143 | 143 | 0.00192 |
| 144 | 144 | 0.599 |
| 145 | 145 | 0.353 |
| 146 | 146 | 0.731 |
| 147 | 147 | 0.146 |
| 148 | 148 | 0.206 |
| 149 | 149 | 0.449 |
| 15 | 15 | 0.028 |
| 150 | 150 | 0.836 |
| 151 | 151 | 0.271 |
| 152 | 152 | 0.256 |
| 153 | 153 | 0.516 |
| 154 | 154 | 0.89 |
| 155 | 155 | 0.217 |
| 156 | 156 | 0.708 |
| 157 | 157 | 0.234 |
| 158 | 158 | 0.251 |
| 159 | 159 | 0.258 |
| 16 | 16 | 0.444 |
| 160 | 160 | 0.762 |
| 161 | 161 | 0.382 |
| 162 | 162 | 0.664 |
| 163 | 163 | 0.516 |
| 164 | 164 | 0.257 |
| 165 | 165 | 0.147 |
| 166 | 166 | 0.798 |
| 167 | 167 | 0.53 |
| 168 | 168 | 0.0739 |
| 169 | 169 | 0.0175 |
| 17 | 17 | 0.405 |
| 18 | 18 | 0.433 |
| 19 | 19 | 0.301 |
| 2 | 2 | 0.205 |
| 20 | 20 | 0.535 |
| 21 | 21 | 0.492 |
| 22 | 22 | 0.148 |
| 23 | 23 | 0.0625 |
| 24 | 24 | 0.017 |
| 25 | 25 | 0.194 |
| 26 | 26 | 0.238 |
| 27 | 27 | 0.0805 |
| 28 | 28 | 0.469 |
| 29 | 29 | 0.41 |
| 3 | 3 | 0.0893 |
| 30 | 30 | 0.835 |
| 31 | 31 | 0.455 |
| 32 | 32 | 0.75 |
| 33 | 33 | 0.611 |
| 34 | 34 | 0.199 |
| 35 | 35 | 0.291 |
| 36 | 36 | 0.52 |
| 37 | 37 | 0.148 |
| 38 | 38 | 0.304 |
| 39 | 39 | 0.939 |
| 4 | 4 | 0.881 |
| 40 | 40 | 0.405 |
| 41 | 41 | 0.0452 |
| 42 | 42 | 0.29 |
| 43 | 43 | 0.152 |
| 44 | 44 | 0.358 |
| 45 | 45 | 0.346 |
| 46 | 46 | 0.135 |
| 47 | 47 | 0.174 |
| 48 | 48 | 0.249 |
| 49 | 49 | 0.161 |
| 5 | 5 | 0.192 |
| 50 | 50 | 0.941 |
| 51 | 51 | 0.397 |
| 52 | 52 | 0.453 |
| 53 | 53 | 0.168 |
| 54 | 54 | 0.321 |
| 55 | 55 | 0.0727 |
| 56 | 56 | 0.253 |
| 57 | 57 | 0.91 |
| 58 | 58 | 0.064 |
| 59 | 59 | 0.0433 |
| 6 | 6 | 0.766 |
| 60 | 60 | 0.0466 |
| 61 | 61 | 0.267 |
| 62 | 62 | 0.0129 |
| 63 | 63 | 0.546 |
| 64 | 64 | 0.369 |
| 65 | 65 | 0.154 |
| 66 | 66 | 0.562 |
| 67 | 67 | 0.247 |
| 68 | 68 | 0.54 |
| 69 | 69 | 0.461 |
| 7 | 7 | 0.172 |
| 70 | 70 | 0.0346 |
| 71 | 71 | 0.111 |
| 72 | 72 | 0.209 |
| 73 | 73 | 0.261 |
| 74 | 74 | 0.562 |
| 75 | 75 | 0.0999 |
| 76 | 76 | 0.552 |
| 77 | 77 | 0.568 |
| 78 | 78 | 0.367 |
| 79 | 79 | 0.956 |
| 8 | 8 | 0.431 |
| 80 | 80 | 0.0096 |
| 81 | 81 | 0.332 |
| 82 | 82 | 0.0313 |
| 83 | 83 | 0.482 |
| 84 | 84 | 0.548 |
| 85 | 85 | 0.162 |
| 86 | 86 | 0.114 |
| 87 | 87 | 0.527 |
| 88 | 88 | 0.543 |
| 89 | 89 | 0.188 |
| 9 | 9 | 0.159 |
| 90 | 90 | 0.0443 |
| 91 | 91 | 0.514 |
| 92 | 92 | 0.0644 |
| 93 | 93 | 0.203 |
| 94 | 94 | 0.115 |
| 95 | 95 | 0.477 |
| 96 | 96 | 0.104 |
| 97 | 97 | 0.765 |
| 98 | 98 | 0.0629 |
| 99 | 99 | 0.494 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11675
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
