FF:12180-129A2: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	Whole blood (ribopure), donor090309, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs11671,RDhi10001
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013677

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11671		CAGE		DRX008530		DRR009402
RDhi10001		RNA-Seq		DRX012354		DRR013802

Accession ID Hg19

Library id		BAM		CTSS
CNhs11671		DRZ000827		DRZ002212
RDhi10001		DRZ003003

Accession ID Hg38

Library id		BAM		CTSS
CNhs11671		DRZ012177		DRZ013562
RDhi10001

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0366
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.34
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	1.251
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.145
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.443
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.384
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.518
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.424
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.247
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.247
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.153
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.403
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.232
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.247
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.303
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.135
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.518
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.169
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.403
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.125
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.646
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0155
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.608
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.828
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.247
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.247
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.247
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.852
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.518
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11671

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.30886e-10
MA0003.1	MA0003.1	0.0639
MA0004.1	MA0004.1	0.622
MA0006.1	MA0006.1	0.567
MA0007.1	MA0007.1	0.954
MA0009.1	MA0009.1	0.0847
MA0014.1	MA0014.1	0.99
MA0017.1	MA0017.1	0.07
MA0018.2	MA0018.2	0.0191
MA0019.1	MA0019.1	0.76
MA0024.1	MA0024.1	0.0146
MA0025.1	MA0025.1	0.957
MA0027.1	MA0027.1	0.405
MA0028.1	MA0028.1	0.784
MA0029.1	MA0029.1	0.69
MA0030.1	MA0030.1	0.0678
MA0031.1	MA0031.1	0.00208
MA0035.2	MA0035.2	1.11065e-5
MA0038.1	MA0038.1	0.0282
MA0039.2	MA0039.2	0.157
MA0040.1	MA0040.1	0.263
MA0041.1	MA0041.1	0.269
MA0042.1	MA0042.1	0.131
MA0043.1	MA0043.1	0.871
MA0046.1	MA0046.1	0.537
MA0047.2	MA0047.2	0.347
MA0048.1	MA0048.1	0.0968
MA0050.1	MA0050.1	1.72184e-6
MA0051.1	MA0051.1	0.0193
MA0052.1	MA0052.1	0.0618
MA0055.1	MA0055.1	0.0326
MA0057.1	MA0057.1	0.833
MA0058.1	MA0058.1	0.632
MA0059.1	MA0059.1	0.458
MA0060.1	MA0060.1	0.00106
MA0061.1	MA0061.1	0.0381
MA0062.2	MA0062.2	3.72281e-4
MA0065.2	MA0065.2	0.152
MA0066.1	MA0066.1	0.248
MA0067.1	MA0067.1	0.567
MA0068.1	MA0068.1	0.743
MA0069.1	MA0069.1	0.454
MA0070.1	MA0070.1	0.0373
MA0071.1	MA0071.1	0.699
MA0072.1	MA0072.1	0.666
MA0073.1	MA0073.1	0.507
MA0074.1	MA0074.1	0.747
MA0076.1	MA0076.1	0.282
MA0077.1	MA0077.1	0.204
MA0078.1	MA0078.1	0.773
MA0079.2	MA0079.2	0.97
MA0080.2	MA0080.2	4.47025e-17
MA0081.1	MA0081.1	0.00158
MA0083.1	MA0083.1	0.764
MA0084.1	MA0084.1	0.725
MA0087.1	MA0087.1	0.933
MA0088.1	MA0088.1	0.429
MA0090.1	MA0090.1	0.0455
MA0091.1	MA0091.1	0.191
MA0092.1	MA0092.1	0.78
MA0093.1	MA0093.1	0.508
MA0099.2	MA0099.2	0.984
MA0100.1	MA0100.1	0.95
MA0101.1	MA0101.1	0.552
MA0102.2	MA0102.2	7.34067e-4
MA0103.1	MA0103.1	0.156
MA0104.2	MA0104.2	0.535
MA0105.1	MA0105.1	1.39137e-4
MA0106.1	MA0106.1	0.69
MA0107.1	MA0107.1	0.734
MA0108.2	MA0108.2	2.47457e-5
MA0111.1	MA0111.1	0.292
MA0112.2	MA0112.2	9.25198e-4
MA0113.1	MA0113.1	0.812
MA0114.1	MA0114.1	0.442
MA0115.1	MA0115.1	0.47
MA0116.1	MA0116.1	7.62763e-6
MA0117.1	MA0117.1	0.745
MA0119.1	MA0119.1	0.38
MA0122.1	MA0122.1	0.287
MA0124.1	MA0124.1	0.485
MA0125.1	MA0125.1	0.0843
MA0131.1	MA0131.1	0.468
MA0135.1	MA0135.1	0.955
MA0136.1	MA0136.1	4.69134e-22
MA0137.2	MA0137.2	0.134
MA0138.2	MA0138.2	0.408
MA0139.1	MA0139.1	0.159
MA0140.1	MA0140.1	1.38606e-17
MA0141.1	MA0141.1	0.755
MA0142.1	MA0142.1	0.989
MA0143.1	MA0143.1	0.709
MA0144.1	MA0144.1	0.128
MA0145.1	MA0145.1	0.0575
MA0146.1	MA0146.1	0.0131
MA0147.1	MA0147.1	0.556
MA0148.1	MA0148.1	0.599
MA0149.1	MA0149.1	0.405
MA0150.1	MA0150.1	0.0158
MA0152.1	MA0152.1	0.106
MA0153.1	MA0153.1	0.122
MA0154.1	MA0154.1	0.00212
MA0155.1	MA0155.1	0.827
MA0156.1	MA0156.1	7.67741e-15
MA0157.1	MA0157.1	0.00668
MA0159.1	MA0159.1	0.172
MA0160.1	MA0160.1	0.571
MA0162.1	MA0162.1	0.392
MA0163.1	MA0163.1	1.6211e-5
MA0164.1	MA0164.1	0.545
MA0258.1	MA0258.1	0.00817
MA0259.1	MA0259.1	0.251

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11671

Novel motif	Logo	P-value
1	1	0.149
10	10	0.0942
100	100	0.496
101	101	0.211
102	102	0.579
103	103	0.101
104	104	0.885
105	105	0.0661
106	106	0.0554
107	107	0.657
108	108	0.881
109	109	0.112
11	11	0.108
110	110	0.359
111	111	0.28
112	112	0.123
113	113	0.178
114	114	0.0551
115	115	0.181
116	116	0.893
117	117	0.0417
118	118	0.464
119	119	0.333
12	12	0.441
120	120	0.698
121	121	0.657
122	122	0.257
123	123	0.105
124	124	0.0309
125	125	0.209
126	126	0.278
127	127	0.22
128	128	0.0459
129	129	0.376
13	13	0.862
130	130	0.539
131	131	0.369
132	132	0.602
133	133	0.372
134	134	0.75
135	135	0.177
136	136	1
137	137	0.0127
138	138	0.0784
139	139	0.0342
14	14	0.188
140	140	0.443
141	141	0.486
142	142	0.74
143	143	0.0035
144	144	0.802
145	145	0.328
146	146	0.617
147	147	0.223
148	148	0.191
149	149	0.479
15	15	0.0525
150	150	0.93
151	151	0.27
152	152	0.404
153	153	0.438
154	154	0.865
155	155	0.196
156	156	0.765
157	157	0.233
158	158	0.218
159	159	0.265
16	16	0.451
160	160	0.718
161	161	0.404
162	162	0.679
163	163	0.379
164	164	0.436
165	165	0.0787
166	166	0.952
167	167	0.85
168	168	0.0441
169	169	0.012
17	17	0.312
18	18	0.509
19	19	0.284
2	2	0.207
20	20	0.498
21	21	0.346
22	22	0.211
23	23	0.0707
24	24	0.0321
25	25	0.254
26	26	0.296
27	27	0.0868
28	28	0.459
29	29	0.585
3	3	0.0772
30	30	0.947
31	31	0.481
32	32	0.721
33	33	0.586
34	34	0.265
35	35	0.223
36	36	0.47
37	37	0.175
38	38	0.305
39	39	0.994
4	4	0.936
40	40	0.439
41	41	0.0979
42	42	0.246
43	43	0.16
44	44	0.415
45	45	0.361
46	46	0.132
47	47	0.181
48	48	0.258
49	49	0.124
5	5	0.153
50	50	0.91
51	51	0.435
52	52	0.52
53	53	0.129
54	54	0.257
55	55	0.12
56	56	0.233
57	57	0.755
58	58	0.0628
59	59	0.0372
6	6	0.652
60	60	0.0701
61	61	0.226
62	62	0.0192
63	63	0.503
64	64	0.375
65	65	0.154
66	66	0.678
67	67	0.287
68	68	0.243
69	69	0.323
7	7	0.204
70	70	0.0792
71	71	0.102
72	72	0.25
73	73	0.369
74	74	0.736
75	75	0.092
76	76	0.563
77	77	0.53
78	78	0.251
79	79	0.939
8	8	0.356
80	80	0.0112
81	81	0.259
82	82	0.0435
83	83	0.999
84	84	0.48
85	85	0.162
86	86	0.138
87	87	0.62
88	88	0.538
89	89	0.255
9	9	0.208
90	90	0.03
91	91	0.357
92	92	0.0769
93	93	0.309
94	94	0.127
95	95	0.556
96	96	0.0628
97	97	0.806
98	98	0.0178
99	99	0.41

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11671

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008422!RNA-Seq@DRS012101
+|DRA_sample_Accession=RNA-Seq@SAMD00013677
-|accession_numbers=CAGE;DRX008530;DRR009402;DRZ000827;DRZ002212!RNA-Seq;DRX012354;DRR013802;DRZ003003;NA
+|accession_numbers=CAGE;DRX008530;DRR009402;DRZ000827;DRZ002212;DRZ012177;DRZ013562!RNA-Seq;DRX012354;DRR013802;DRZ003003;
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54694653..54694672,-!p2@NFE2!2.85!702.70!NFE2;;chr11:47400078..47400106,-!p1@SPI1!2.71!516.89!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.56!364.73!PLEK;;chrX:131623044..131623089,-!p1@MBNL3!2.36!896.92!MBNL3;;chrX:131622958..131622978,-!p3@MBNL3!2.36!282.92!MBNL3;;chr12:54694758..54694805,-!p1@NFE2!2.35!268.39!NFE2;;chrX:131623026..131623039,-!p5@MBNL3!2.32!209.51!MBNL3;;chrX:70315688..70315709,+!p1@FOXO4!2.31!454.19!FOXO4;;chrX:131622988..131623006,-!p8@MBNL3!2.26!178.93!MBNL3;;chr12:54694807..54694832,-!p3@NFE2!2.25!177.40!NFE2;;chr10:51572339..51572376,+!p4@NCOA4!2.22!360.91!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.17!159.81!LYL1;;chr10:51572408..51572454,+!p3@NCOA4!2.11!707.29!NCOA4;;chr7:28220506..28220552,-!p3@JAZF1!2.08!118.52!JAZF1;;chr19:12998003..12998021,-!p1@KLF1!2.07!115.46!KLF1;;chr7:28220354..28220441,-!p1@JAZF1!1.99!1390.11!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!1.97!91.76!GATA2;;chr2:70142232..70142251,+!p1@MXD1!1.93!445.78!MXD1;;chr10:51585430..51585448,+!p7@NCOA4!1.91!81.05!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.83!66.52!NCOA4;;chr1:43148855..43148908,+!p4@YBX1!1.78!92.52!YBX1;;chr1:47697965..47697991,-!p7@TAL1!1.78!58.88!TAL1;;chr16:85932760..85932775,+!p1@IRF8!1.77!57.35!IRF8;;chr2:148778973..148779035,+!p3@MBD5!1.76!142.99!MBD5;;chr3:141748010..141748030,-!p8@TFDP2!1.75!55.05!TFDP2;;chr21:34442439..34442455,+!p1@OLIG1!1.72!52.00!OLIG1;;chr4:109087445..109087463,-!p1@LEF1!1.72!51.23!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.71!49.70!IKZF1;;chr10:111985713..111985774,+!p2@MXI1!1.69!431.26!MXI1;;chr12:54689552..54689574,-!p6@NFE2!1.69!48.17!NFE2;;chr17:45810594..45810608,+!p1@TBX21!1.66!45.11!TBX21;;chrX:48644984..48645005,+!p1@GATA1!1.66!44.35!GATA1;;chr1:23857325..23857416,-!p2@E2F2!1.64!48.94!E2F2;;chr11:47400062..47400077,-!p2@SPI1!1.64!42.82!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.59!37.47!SPI1;;chr10:111967345..111967422,+!p1@MXI1!1.58!565.83!MXI1;;chr19:13213555..13213568,-!p5@LYL1!1.57!35.94!LYL1;;chr19:13213634..13213645,-!p8@LYL1!1.56!35.17!LYL1;;chr19:13213662..13213686,-!p1@LYL1!1.54!49.70!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.54!33.64!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.54!33.64!IKZF1;;chr3:27763807..27763822,-!p1@EOMES!1.54!33.64!EOMES;;chr3:187463179..187463201,-!p2@BCL6!1.53!132.28!BCL6;;chr11:47399947..47399961,-!p3@SPI1!1.52!32.11!SPI1;;chr11:47400045..47400060,-!p6@SPI1!1.52!32.11!SPI1;;chr5:133451294..133451310,+!p2@TCF7!1.51!31.35!TCF7;;chr12:54778471..54778528,-!p1@ZNF385A!1.50!30.59!ZNF385A;;chr2:192015701..192015743,-!p1@STAT4!1.49!40.53!STAT4;;chr17:17721569..17721574,-!p9@SREBF1!1.47!28.29!SREBF1;;chr9:117150254..117150271,-!p1@AKNA!1.43!68.82!AKNA;;chr1:25256756..25256774,-!p1@RUNX3!1.42!46.64!RUNX3;;chr7:28725740..28725778,+!p1@CREB5!1.41!214.10!CREB5;;chr7:28725715..28725727,+!p3@CREB5!1.41!29.06!CREB5;;chr19:16435625..16435682,+!p1@KLF2!1.40!746.29!KLF2;;chr2:231090433..231090469,+!p1@SP140!1.39!23.70!SP140;;chr2:100759010..100759035,-!p1@AFF3!1.38!22.94!AFF3;;chr10:51565239..51565263,+!p2@NCOA4!1.37!507.72!NCOA4;;chr12:54691711..54691725,-!p7@NFE2!1.37!22.17!NFE2;;chr1:43148792..43148849,+!p2@YBX1!1.35!79.52!YBX1;;chr6:108881012..108881034,+!p3@FOXO3!1.34!74.17!FOXO3;;chrX:107018836..107018862,-!p8@TSC22D3!1.34!20.65!TSC22D3;;chr9:135854091..135854159,+!p1@GFI1B!1.34!20.65!GFI1B;;chr2:231090471..231090504,+!p2@SP140!1.34!20.65!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.34!20.65!PLEK;;chr12:10854646..10854658,-!p24@CSDA!1.32!19.88!CSDA;;chr1:8484007..8484061,-!p13@RERE!1.31!24.47!RERE;;chr5:133450365..133450444,+!p1@TCF7!1.30!84.11!TCF7;;chr6:144385698..144385742,-!p2@PLAGL1!1.30!22.94!PLAGL1;;chr17:38497662..38497713,+!p4@RARA!1.30!22.17!RARA;;chr1:23857128..23857141,-!p6@E2F2!1.30!19.12!E2F2;;chr11:111249993..111250006,-!p1@POU2AF1!1.30!19.12!POU2AF1;;chr12:54689532..54689551,-!p4@NFE2!1.30!19.12!NFE2;;chr2:192015750..192015793,-!p2@STAT4!1.29!24.47!STAT4;;chr12:54694738..54694749,-!p5@NFE2!1.29!18.35!NFE2;;chr17:38020392..38020477,-!p1@IKZF3!1.29!18.35!IKZF3;;chr1:23857698..23857733,-!p1@E2F2!1.28!32.88!E2F2;;chrX:106960285..106960299,-!p1@TSC22D3!1.27!461.08!TSC22D3;;chr16:3313791..3313834,+!p2@ZNF263!1.26!37.47!ZNF263;;chr11:128563948..128564003,+!p1@FLI1!1.25!195.75!FLI1;;chr3:63953435..63953499,+!p1@ATXN7!1.25!16.82!ATXN7;;chr5:176735063..176735088,-!p2@MXD3!1.25!16.82!MXD3;;chr13:41593425..41593480,-!p1@ELF1!1.21!95.58!ELF1;;chr9:137217986..137218049,+!p3@RXRA!1.21!43.58!RXRA;;chr4:185395633..185395651,-!p2@IRF2!1.21!24.47!IRF2;;chr16:88752889..88752921,-!p1@SNAI3!1.21!17.59!SNAI3;;chr6:391743..391759,+!p1@IRF4!1.21!15.29!IRF4;;chr12:6782377..6782382,-!p15@ZNF384!1.21!15.29!ZNF384;;chr5:131826457..131826514,-!p1@IRF1!1.20!571.18!IRF1;;chr1:47697881..47697910,-!p4@TAL1!1.19!14.53!TAL1;;chr20:56195474..56195506,-!p1@ZBP1!1.19!14.53!ZBP1;;chr2:70142189..70142223,+!p2@MXD1!1.18!100.17!MXD1;;chr19:50922187..50922204,+!p1@SPIB!1.17!13.76!SPIB;;chrX:70316005..70316034,+!p2@FOXO4!1.16!24.47!FOXO4;;chr4:185395590..185395627,-!p3@IRF2!1.16!16.82!IRF2;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.15!21.41!PCBP2;;chr20:50159198..50159299,-!p1@NFATC2!1.15!19.12!NFATC2;;chr20:56195525..56195556,-!p2@ZBP1!1.15!13.00!ZBP1;;chr7:149470641..149470694,-!p1@ZNF467!1.14!57.35!ZNF467;;chrX:106960180..106960197,-!p2@TSC22D3!1.14!48.94!TSC22D3;;chr6:106546808..106546833,+!p3@PRDM1!1.14!16.06!PRDM1;;chr2:208031943..208031978,-!p5@KLF7!1.13!16.82!KLF7;;chr3:71632840..71632857,-!p10@FOXP1!1.12!24.47!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.23!IKZF1;;chr12:10875658..10875708,-!p2@CSDA!1.11!27.53!CSDA;;chr4:185395191..185395226,-!p4@IRF2!1.10!16.06!IRF2;;chr14:99738059..99738086,-!p2@BCL11B!1.10!11.47!BCL11B;;chr5:88178983..88179012,-!p1@MEF2C!1.09!87.93!MEF2C;;chr7:149470540..149470596,-!p2@ZNF467!1.08!14.53!ZNF467;;chr2:231084659..231084721,-!p1@SP110!1.07!249.27!SP110;;chr21:30671235..30671253,+!p1@BACH1!1.07!138.40!BACH1;;chr17:38498594..38498661,+!p2@RARA!1.07!36.70!RARA;;chr2:28618532..28618610,+!p4@FOSL2!1.07!18.35!FOSL2;;chr9:32550965..32551031,-!p4@TOPORS!1.07!16.82!TOPORS;;chr19:45251395..45251432,+!p8@BCL3!1.07!10.70!BCL3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.70!IKZF1;;chr12:124812308..124812313,-!p57@NCOR2!1.07!10.70!NCOR2;;chrX:107018969..107019024,-!p6@TSC22D3!1.06!14.53!TSC22D3;;chr9:117160738..117160782,-!p2@AKNA!1.05!42.82!AKNA;;chr3:18486354..18486377,-!p2@SATB1!1.05!13.00!SATB1;;chr2:208031542..208031595,-!p2@KLF7!1.04!71.11!KLF7;;chr2:231084639..231084654,-!p2@SP110!1.04!16.82!SP110;;chr12:54694686..54694697,-!p8@NFE2!1.04!9.94!NFE2;;chr5:140080022..140080042,+!p1@ZMAT2!1.03!524.54!ZMAT2;;chr21:30671211..30671234,+!p3@BACH1!1.03!48.17!BACH1;;chr19:56879534..56879615,+!p3@ZNF542!1.03!15.29!ZNF542;;chr10:31288398..31288455,-!p2@ZNF438!1.03!11.47!ZNF438;;chr5:142782823..142782854,-!p3@NR3C1!1.02!13.76!NR3C1;;chr10:8096631..8096660,+!p1@GATA3!1.02!11.47!GATA3;;chr1:164528297..164528309,+!p9@PBX1!1.01!12.23!PBX1;;chr1:47695003..47695042,-!p2@TAL1!1.01!9.18!TAL1;;chr17:37934365..37934387,-!p2@IKZF3!1.01!9.18!IKZF3;;chr15:60884706..60884743,-!p1@RORA!1.00!47.41!RORA;;chr4:106068026..106068084,+!p1@TET2!0.99!81.82!TET2;;chr7:64126535..64126559,+!p2@ZNF107!0.99!19.12!ZNF107;;chr3:71355163..71355209,-!p5@FOXP1!0.99!12.23!FOXP1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.97!56.58!ZNF580;;chr21:34398234..34398250,+!p1@OLIG2!0.97!8.41!OLIG2;;chr7:115670804..115670825,-!p1@TFEC!0.97!8.41!TFEC;;chr2:100759037..100759058,-!p2@AFF3!0.97!8.41!AFF3;;chr4:109090075..109090095,-!p2@LEF1!0.97!8.41!LEF1;;chr2:145277640..145277771,-!p1@ZEB2!0.96!113.17!ZEB2;;chr3:187463220..187463232,-!p3@BCL6!0.96!25.23!BCL6;;chr1:161736038..161736056,+!p4@ATF6!0.95!19.12!ATF6;;chr2:70167296..70167306,+!p3@MXD1!0.95!12.23!MXD1;;chr6:15246200..15246214,+!p2@JARID2!0.94!22.17!JARID2;;chr14:69262789..69262822,-!p2@ZFP36L1!0.94!20.65!ZFP36L1;;chr6:135516877..135516900,+!p5@MYB!0.94!7.65!MYB;;chr21:34442540..34442560,+!p2@OLIG1!0.94!7.65!OLIG1;;chr3:71542615..71542644,-!p12@FOXP1!0.94!7.65!FOXP1;;chr4:57522598..57522664,-!p3@HOPX!0.94!7.65!HOPX;;chr6:108880956..108881011,+!p1@FOXO3!0.93!52.00!FOXO3;;chr1:67395855..67395872,+!p5@MIER1!0.93!11.47!MIER1;;chr12:10854595..10854628,-!p7@CSDA!0.93!10.70!CSDA;;chr3:141747459..141747475,-!p1@TFDP2!0.92!63.46!TFDP2;;chr9:88969339..88969422,-!p2@ZCCHC6!0.92!59.64!ZCCHC6;;chr9:3525727..3525828,-!p2@RFX3!0.92!19.12!RFX3;;chr14:75988771..75988826,+!p1@BATF!0.92!9.94!BATF;;chr14:65569186..65569243,-!p1@MAX!0.91!436.61!MAX;;chr4:140098339..140098392,-!p1@ELF2!0.91!61.94!ELF2;;chr6:108882109..108882173,+!p2@FOXO3!0.91!40.53!FOXO3;;chr16:68119324..68119364,+!p1@NFATC3!0.91!33.64!NFATC3;;chr11:128392273..128392308,-!p2@ETS1!0.91!31.35!ETS1;;chr16:31885093..31885165,+!p1@ZNF267!0.90!110.11!ZNF267;;chr8:71316021..71316068,-!p1@NCOA2!0.90!67.29!NCOA2;;chr6:15249128..15249177,+!p4@JARID2!0.90!13.00!JARID2;;chr6:108882364..108882391,+!p4@FOXO3!0.90!9.94!FOXO3;;chr7:50348268..50348366,+!p4@IKZF1!0.90!6.88!IKZF1;;chr1:23857087..23857100,-!p8@E2F2!0.90!6.88!E2F2;;chrX:131574281..131574293,-!p18@MBNL3!0.90!6.88!MBNL3;;chr12:54691726..54691738,-!p9@NFE2!0.90!6.88!NFE2;;chr3:18487057..18487105,-!p4@SATB1!0.90!6.88!SATB1;;chr17:38498402..38498445,+!p3@RARA!0.89!25.23!RARA;;chrX:101186981..101187030,-!p1@ZMAT1!0.89!22.94!ZMAT1;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.06!BACH2;;chr19:13213704..13213726,-!p3@LYL1!0.89!9.18!LYL1;;chr12:57505121..57505179,-!p1@STAT6!0.88!272.21!STAT6;;chr4:38665769..38665801,+!p2@KLF3!0.88!63.46!KLF3;;chr1:158979872..158979898,+!p3@IFI16!0.88!21.41!IFI16;;chr6:15245677..15245723,+!p6@JARID2!0.88!9.94!JARID2;;chr9:117150303..117150312,-!p3@AKNA!0.88!8.41!AKNA;;chr6:106534230..106534254,+!p2@PRDM1!0.87!16.82!PRDM1;;chr4:38665703..38665713,+!p5@KLF3!0.87!13.00!KLF3;;chr2:208394817..208394834,+!p3@CREB1!0.86!26.76!CREB1;;chr21:36421535..36421610,-!p2@RUNX1!0.86!23.70!RUNX1;;chr19:58326267..58326292,-!p1@ZNF552!0.85!22.94!ZNF552;;chr19:42636586..42636607,-!p1@POU2F2!0.85!17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chr6:15246261..15246312,+!p1@JARID2!0.53!74.17!JARID2;;chr19:44507091..44507163,+!p1@ZNF230!0.53!13.00!ZNF230;;chr1:8483878..8483907,-!p4@RERE!0.53!11.47!RERE;;chr4:87928142..87928165,+!p5@AFF1!0.53!9.94!AFF1;;chr4:87928328..87928351,+!p6@AFF1!0.53!7.65!AFF1;;chr7:6676986..6677005,+!p2@ENST00000427912!0.53!7.65!ZNF316;;chr1:151319654..151319698,-!p2@RFX5!0.53!6.12!RFX5;;chr1:158979851..158979865,+!p5@IFI16!0.53!6.12!IFI16;;chr19:19779589..19779616,+!p2@ZNF101!0.53!5.35!ZNF101;;chr4:38665753..38665757,+!p7@KLF3!0.53!4.59!KLF3;;chr1:156470494..156470505,-!p3@MEF2D!0.53!3.82!MEF2D;;chr19:4067174..4067200,-!p9@ZBTB7A!0.53!3.06!ZBTB7A;;chr1:67395833..67395851,+!p8@MIER1!0.53!3.06!MIER1;;chr14:69262947..69262986,-!p3@ZFP36L1!0.53!3.06!ZFP36L1;;chr2:174828545..174828644,-!p1@SP3!0.52!45.88!SP3;;chr19:12273866..12273935,+!p1@ZNF136!0.52!26.76!ZNF136;;chr1:156470515..156470542,-!p2@MEF2D!0.52!15.29!MEF2D;;chr21:44394742..44394756,+!p2@PKNOX1!0.52!6.12!PKNOX1;;chr6:42419649..42419673,-!p3@TRERF1!0.52!4.59!TRERF1;;chr7:92076714..92076729,+!p2@GATAD1!0.52!3.06!GATAD1;;chr15:31619407..31619419,+!p9@KLF13!0.52!3.06!KLF13;;chr17:40719165..40719168,+!p4@MLX!0.52!3.06!MLX;;chr14:75988831..75988847,+!p2@BATF!0.52!2.29!BATF;;chr16:85936412..85936431,+!p2@IRF8!0.52!2.29!IRF8;;chr17:38020607..38020621,-!p9@IKZF3!0.52!2.29!IKZF3;;chr17:45810816..45810838,+!p2@TBX21!0.52!2.29!TBX21;;chr19:13213691..13213696,-!p9@LYL1!0.52!2.29!LYL1;;chr6:106546834..106546850,+!p4@PRDM1!0.52!2.29!PRDM1;;chr6:135516909..135516925,+!p6@MYB!0.52!2.29!MYB;;chr6:41691289..41691312,-!p9@TFEB!0.52!2.29!TFEB;;chr7:149470297..149470337,-!p3@ZNF467!0.52!2.29!ZNF467;;chr7:50343864..50343888,+!p7@IKZF1!0.52!2.29!IKZF1;;chr19:38183138..38183157,-!p2@ZNF781!0.52!2.29!ZNF781;;chr1:244219392..244219409,+!p5@ZNF238!0.52!2.29!ZNF238;;chr1:25256439..25256476,-!p3@RUNX3!0.52!2.29!RUNX3;;chr1:47697539..47697573,-!p3@TAL1!0.52!2.29!TAL1;;chr10:31288329..31288353,-!p7@ZNF438!0.52!2.29!ZNF438;;chr12:10865922..10865934,-!p15@CSDA!0.52!2.29!CSDA;;chr13:41593493..41593506,-!p8@ELF1!0.52!2.29!ELF1;;chr13:45009301..45009320,-!p7@TSC22D1!0.52!2.29!TSC22D1;;chr2:100759060..100759073,-!p8@AFF3!0.52!2.29!AFF3;;chr2:60780730..60780742,-!p5@BCL11A!0.52!2.29!BCL11A;;chr2:97202991..97203043,+!p3@ARID5A!0.52!2.29!ARID5A;;chr3:18465604..18465618,-!p9@SATB1!0.52!2.29!SATB1;;chr3:21792790..21792824,-!p4@ZNF385D!0.52!2.29!ZNF385D;;chr3:27763383..27763413,-!p3@EOMES!0.52!2.29!EOMES;;chr4:109088130..109088163,-!p13@LEF1!0.52!2.29!LEF1;;chr4:149365827..149365870,-!p5@NR3C2!0.52!2.29!NR3C2;;chr4:57522513..57522548,-!p4@HOPX!0.52!2.29!HOPX;;chrX:47225841..47225861,+!p@chrX:47225841..47225861,+!0.52!2.29!ZNF157;;chr8:41909496..41909512,-!p1@KAT6A!0.51!89.46!KAT6A;;chr9:137218281..137218340,+!p1@RXRA!0.51!84.11!RXRA;;chr4:26322616..26322652,+!p1@RBPJ!0.51!64.23!RBPJ;;chr10:38299546..38299686,+!p1@ZNF33A!0.51!42.06!ZNF33A;;chr1:161015706..161015747,-!p1@USF1!0.51!35.17!USF1;;chr6:35310312..35310359,+!p1@PPARD!0.51!26.00!PPARD;;chr2:145275162..145275202,-!p2@ZEB2!0.51!16.82!ZEB2;;chr19:58144529..58144579,+!p1@ZNF211!0.51!15.29!ZNF211;;chr19:47615477..47615491,-!p3@ZC3H4!0.51!12.23!ZC3H4;;chr19:11959532..11959593,+!p1@ZNF439!0.51!10.70!ZNF439;;chr4:47916543..47916580,-!p2@NFXL1!0.51!9.18!NFXL1;;chr19:40502938..40502987,+!p1@ZNF546!0.51!6.88!ZNF546;;chr3:63898321..63898396,+!p3@ATXN7!0.51!6.12!ATXN7;;chr11:64073006..64073017,+!p3@ESRRA!0.51!6.12!ESRRA;;chr12:10875768..10875808,-!p3@CSDA!0.51!3.82!CSDA;;chr1:247095162..247095173,-!p3@AHCTF1!0.51!3.82!AHCTF1;;chr7:127032330..127032356,-!p3@ZNF800!0.51!3.06!ZNF800;;chr11:9482551..9482580,+!p1@ZNF143!0.50!36.70!ZNF143;;chr14:65569244..65569264,-!p2@MAX!0.50!32.88!MAX;;chr7:149194756..149194839,-!p1@ZNF746!0.50!22.17!ZNF746;;chr5:172483347..172483407,+!p1@C5orf41!0.50!21.41!CREBRF;;chr19:21579908..21579949,+!p1@ZNF493!0.50!16.82!ZNF493;;chr19:53836985..53837024,+!p1@ZNF845!0.50!13.76!ZNF845;;chr21:27107672..27107698,+!p2@GABPA!0.50!11.47!GABPA;;chr19:6110555..6110617,-!p2@RFX2!0.50!9.18!RFX2;;chr1:164528384..164528409,+!p3@PBX1!0.50!8.41!PBX1;;chr9:114287433..114287513,+!p1@ZNF483!0.50!6.88!ZNF483;;chr19:58326246..58326262,-!p2@ZNF552!0.50!6.12!ZNF552;;chr15:74833584..74833626,+!p1@ARID3B!0.50!6.12!ARID3B;;chr5:180288225..180288243,-!p3@ZFP62!0.50!5.35!ZFP62;;chr1:8484294..8484307,-!p16@RERE!0.50!3.82!RERE;;chr2:148779187..148779222,+!p5@MBD5!0.50!3.06!MBD5;;chr6:134274354..134274371,+!p1@TBPL1!0.49!74.93!TBPL1;;chr7:104654623..104654669,+!p1@MLL5!0.49!74.93!MLL5;;chr16:31085714..31085783,+!p1@ZNF646!0.49!45.88!ZNF646;;chr10:3827417..3827428,-!p3@KLF6!0.49!23.70!KLF6;;chr19:58361185..58361235,+!p2@ZNF587!0.49!14.53!ZNF587;;chr19:9546227..9546257,-!p2@ZNF266!0.49!13.76!ZNF266;;chr2:208394704..208394715,+!p4@CREB1!0.49!8.41!CREB1;;chr16:29817231..29817290,+!p10@MAZ!0.49!7.65!MAZ;;chr6:20403727..20403769,+!p4@E2F3!0.49!6.12!E2F3;;chr5:142784101..142784130,-!p4@NR3C1!0.49!4.59!NR3C1;;chr4:81118647..81118666,+!p1@PRDM8!0.49!3.06!PRDM8;;chr15:85291785..8529184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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation2.CNhs11671.12180-129A2.hg38.nobarcode.ctss.bed.gz
 |id=FF:12180-129A2
 |is_a=EFO:0002091;;FF:0000002;;FF:0000281
 |is_obsolete=
 |library_id=CNhs11671!RDhi10001
-|library_ids=CNhs11671!RDhi10001
+|library_id_phase_based=2:CNhs11671
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12180
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12180
 |name=Whole blood (ribopure), donor090309, donation2
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11671,LSID808,release008,COMPLETED
-|profile_rnaseq=RDhi10001,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12180-129A2;search_select_hide=table117:FF:12180-129A2
 }}

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FF:12180-129A2: Difference between revisions

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Latest revision as of 18:33, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0