FF:12196-129B9: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD8+ T Cells (pluriselect), donor090309, donation3
Species:	Human (Homo sapiens)
Library ID:	CNhs12180,RDhi10016
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	T cell, CD8+
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013696

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12180		CAGE		DRX008066		DRR008938
RDhi10016		RNA-Seq		DRX012349		DRR013797

Accession ID Hg19

Library id		BAM		CTSS
CNhs12180		DRZ000363		DRZ001748
RDhi10016		DRZ002998

Accession ID Hg38

Library id		BAM		CTSS
CNhs12180		DRZ011713		DRZ013098
RDhi10016

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.143
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.284
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.441
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.259
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.826
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.537
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.288
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.463
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.169
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.463
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.384
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.217
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.681
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.19
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.603
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.205
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.29
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.29
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.935
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.884
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12180

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	6.49945e-9
MA0003.1	MA0003.1	0.582
MA0004.1	MA0004.1	0.847
MA0006.1	MA0006.1	0.47
MA0007.1	MA0007.1	0.913
MA0009.1	MA0009.1	0.295
MA0014.1	MA0014.1	0.916
MA0017.1	MA0017.1	0.0509
MA0018.2	MA0018.2	0.522
MA0019.1	MA0019.1	0.717
MA0024.1	MA0024.1	0.171
MA0025.1	MA0025.1	0.461
MA0027.1	MA0027.1	0.914
MA0028.1	MA0028.1	2.02593e-4
MA0029.1	MA0029.1	0.914
MA0030.1	MA0030.1	0.442
MA0031.1	MA0031.1	0.0368
MA0035.2	MA0035.2	0.1
MA0038.1	MA0038.1	0.104
MA0039.2	MA0039.2	0.681
MA0040.1	MA0040.1	0.728
MA0041.1	MA0041.1	0.554
MA0042.1	MA0042.1	0.69
MA0043.1	MA0043.1	0.178
MA0046.1	MA0046.1	0.816
MA0047.2	MA0047.2	0.165
MA0048.1	MA0048.1	0.509
MA0050.1	MA0050.1	4.97052e-6
MA0051.1	MA0051.1	0.00374
MA0052.1	MA0052.1	0.0173
MA0055.1	MA0055.1	0.936
MA0057.1	MA0057.1	0.86
MA0058.1	MA0058.1	0.804
MA0059.1	MA0059.1	0.31
MA0060.1	MA0060.1	0.0595
MA0061.1	MA0061.1	0.00735
MA0062.2	MA0062.2	1.09758e-13
MA0065.2	MA0065.2	0.00826
MA0066.1	MA0066.1	0.0697
MA0067.1	MA0067.1	0.628
MA0068.1	MA0068.1	0.832
MA0069.1	MA0069.1	0.819
MA0070.1	MA0070.1	0.59
MA0071.1	MA0071.1	0.586
MA0072.1	MA0072.1	0.236
MA0073.1	MA0073.1	0.82
MA0074.1	MA0074.1	0.513
MA0076.1	MA0076.1	1.85774e-6
MA0077.1	MA0077.1	0.139
MA0078.1	MA0078.1	0.555
MA0079.2	MA0079.2	0.248
MA0080.2	MA0080.2	5.14786e-12
MA0081.1	MA0081.1	0.0419
MA0083.1	MA0083.1	0.0118
MA0084.1	MA0084.1	0.835
MA0087.1	MA0087.1	0.907
MA0088.1	MA0088.1	0.0602
MA0090.1	MA0090.1	0.00122
MA0091.1	MA0091.1	0.738
MA0092.1	MA0092.1	0.509
MA0093.1	MA0093.1	0.961
MA0099.2	MA0099.2	0.144
MA0100.1	MA0100.1	0.446
MA0101.1	MA0101.1	0.856
MA0102.2	MA0102.2	0.685
MA0103.1	MA0103.1	0.099
MA0104.2	MA0104.2	0.122
MA0105.1	MA0105.1	2.06824e-6
MA0106.1	MA0106.1	0.619
MA0107.1	MA0107.1	0.828
MA0108.2	MA0108.2	1.24653e-10
MA0111.1	MA0111.1	0.18
MA0112.2	MA0112.2	0.0553
MA0113.1	MA0113.1	0.232
MA0114.1	MA0114.1	0.15
MA0115.1	MA0115.1	0.889
MA0116.1	MA0116.1	9.23863e-5
MA0117.1	MA0117.1	0.705
MA0119.1	MA0119.1	0.871
MA0122.1	MA0122.1	0.476
MA0124.1	MA0124.1	0.548
MA0125.1	MA0125.1	0.589
MA0131.1	MA0131.1	0.43
MA0135.1	MA0135.1	0.328
MA0136.1	MA0136.1	6.19133e-23
MA0137.2	MA0137.2	0.283
MA0138.2	MA0138.2	0.799
MA0139.1	MA0139.1	0.00854
MA0140.1	MA0140.1	0.123
MA0141.1	MA0141.1	0.556
MA0142.1	MA0142.1	0.806
MA0143.1	MA0143.1	0.502
MA0144.1	MA0144.1	0.43
MA0145.1	MA0145.1	0.985
MA0146.1	MA0146.1	0.392
MA0147.1	MA0147.1	0.0975
MA0148.1	MA0148.1	0.211
MA0149.1	MA0149.1	0.0563
MA0150.1	MA0150.1	0.739
MA0152.1	MA0152.1	0.0649
MA0153.1	MA0153.1	0.407
MA0154.1	MA0154.1	0.00531
MA0155.1	MA0155.1	0.761
MA0156.1	MA0156.1	1.62197e-19
MA0157.1	MA0157.1	0.0214
MA0159.1	MA0159.1	0.0863
MA0160.1	MA0160.1	0.365
MA0162.1	MA0162.1	0.794
MA0163.1	MA0163.1	1.80184e-14
MA0164.1	MA0164.1	0.519
MA0258.1	MA0258.1	0.0741
MA0259.1	MA0259.1	0.384

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12180

Novel motif	Logo	P-value
1	1	0.151
10	10	0.0191
100	100	0.921
101	101	0.203
102	102	0.732
103	103	0.158
104	104	0.417
105	105	0.114
106	106	0.606
107	107	0.367
108	108	0.785
109	109	0.0594
11	11	0.0556
110	110	0.393
111	111	0.182
112	112	0.231
113	113	0.236
114	114	0.14
115	115	0.186
116	116	0.872
117	117	0.00517
118	118	0.407
119	119	0.434
12	12	0.726
120	120	0.247
121	121	0.745
122	122	0.45
123	123	0.0205
124	124	0.0455
125	125	0.489
126	126	0.379
127	127	0.524
128	128	0.649
129	129	0.118
13	13	0.406
130	130	0.726
131	131	0.762
132	132	0.921
133	133	0.613
134	134	0.732
135	135	0.183
136	136	0.863
137	137	0.269
138	138	0.265
139	139	0.0101
14	14	0.294
140	140	0.0214
141	141	0.417
142	142	0.4
143	143	3.02914e-5
144	144	0.712
145	145	0.357
146	146	0.112
147	147	0.115
148	148	0.124
149	149	0.952
15	15	0.0528
150	150	0.671
151	151	0.341
152	152	0.338
153	153	0.4
154	154	0.943
155	155	0.0243
156	156	0.576
157	157	0.603
158	158	0.295
159	159	0.057
16	16	0.595
160	160	0.31
161	161	0.18
162	162	0.589
163	163	0.776
164	164	0.279
165	165	0.28
166	166	0.546
167	167	0.247
168	168	0.0457
169	169	0.51
17	17	0.588
18	18	0.403
19	19	0.593
2	2	0.623
20	20	0.938
21	21	0.449
22	22	0.909
23	23	0.942
24	24	0.545
25	25	0.0947
26	26	0.352
27	27	0.0664
28	28	0.45
29	29	0.0877
3	3	0.0381
30	30	0.516
31	31	0.717
32	32	0.33
33	33	0.249
34	34	0.862
35	35	0.0426
36	36	0.0113
37	37	0.16
38	38	0.592
39	39	0.583
4	4	0.476
40	40	0.371
41	41	0.17
42	42	0.0429
43	43	0.174
44	44	0.672
45	45	0.998
46	46	0.071
47	47	0.0522
48	48	0.135
49	49	0.0901
5	5	0.127
50	50	0.592
51	51	0.387
52	52	0.423
53	53	0.227
54	54	0.475
55	55	0.326
56	56	0.524
57	57	0.325
58	58	0.0601
59	59	0.299
6	6	1
60	60	0.293
61	61	0.105
62	62	0.0244
63	63	0.543
64	64	0.139
65	65	0.699
66	66	0.617
67	67	0.875
68	68	0.362
69	69	0.957
7	7	0.171
70	70	0.0052
71	71	0.0547
72	72	0.0702
73	73	0.634
74	74	0.429
75	75	0.0329
76	76	0.233
77	77	0.871
78	78	0.126
79	79	0.15
8	8	0.55
80	80	0.00188
81	81	0.269
82	82	0.123
83	83	0.547
84	84	0.563
85	85	0.975
86	86	0.255
87	87	0.734
88	88	0.903
89	89	0.839
9	9	0.514
90	90	0.012
91	91	0.848
92	92	0.291
93	93	0.241
94	94	0.0497
95	95	0.0148
96	96	0.0617
97	97	0.366
98	98	0.0719
99	99	0.279

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12180

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=RNA-Seq@SAMD00013696
+|accession_numbers=CAGE;DRX008066;DRR008938;DRZ000363;DRZ001748;DRZ011713;DRZ013098!RNA-Seq;DRX012349;DRR013797;DRZ002998;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:27763807..27763822,-!p1@EOMES!1.90!77.94!EOMES;;chr2:68592406..68592424,+!p1@PLEK!1.89!76.99!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.86!72.23!TBX21;;chr5:133451294..133451310,+!p2@TCF7!1.80!61.78!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.79!60.83!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.76!76.99!STAT4;;chr17:37934365..37934387,-!p2@IKZF3!1.70!49.42!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.65!43.72!ATXN7;;chr1:25256756..25256774,-!p1@RUNX3!1.64!78.89!RUNX3;;chr2:231090433..231090469,+!p1@SP140!1.63!41.82!SP140;;chr4:109087445..109087463,-!p1@LEF1!1.61!39.92!LEF1;;chr2:192015750..192015793,-!p2@STAT4!1.60!51.32!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.57!96.95!AKNA;;chr14:75988771..75988826,+!p1@BATF!1.55!45.62!BATF;;chr2:68592394..68592405,+!p2@PLEK!1.52!32.32!PLEK;;chr5:133450365..133450444,+!p1@TCF7!1.47!126.41!TCF7;;chr19:16435625..16435682,+!p1@KLF2!1.44!811.69!KLF2;;chr4:57522166..57522260,-!p2@HOPX!1.41!28.51!HOPX;;chr7:50343895..50343936,+!p5@IKZF1!1.39!23.76!IKZF1;;chr19:19779619..19779670,+!p1@ZNF101!1.38!62.73!ZNF101;;chr20:50159198..50159299,-!p1@NFATC2!1.36!31.36!NFATC2;;chr7:50344251..50344288,+!p3@IKZF1!1.32!19.96!IKZF1;;chr15:60884706..60884743,-!p1@RORA!1.29!93.14!RORA;;chr3:71355163..71355209,-!p5@FOXP1!1.28!24.71!FOXP1;;chr4:109090075..109090095,-!p2@LEF1!1.28!18.06!LEF1;;chr17:37934204..37934241,-!p3@IKZF3!1.28!18.06!IKZF3;;chr5:133451347..133451358,+!p3@TCF7!1.26!17.11!TCF7;;chr6:106546808..106546833,+!p3@PRDM1!1.25!20.91!PRDM1;;chr3:71542651..71542683,-!p22@FOXP1!1.21!15.21!FOXP1;;chr20:56195474..56195506,-!p1@ZBP1!1.21!15.21!ZBP1;;chr14:75988831..75988847,+!p2@BATF!1.18!14.26!BATF;;chr17:38020392..38020477,-!p1@IKZF3!1.18!14.26!IKZF3;;chr3:18486354..18486377,-!p2@SATB1!1.17!17.11!SATB1;;chrX:106960285..106960299,-!p1@TSC22D3!1.16!353.57!TSC22D3;;chr17:37934280..37934299,-!p6@IKZF3!1.16!13.31!IKZF3;;chr4:57522598..57522664,-!p3@HOPX!1.16!13.31!HOPX;;chr13:74707894..74707947,-!p6@KLF12!1.14!14.26!KLF12;;chr11:128392085..128392232,-!p1@ETS1!1.13!416.30!ETS1;;chr13:41593425..41593480,-!p1@ELF1!1.13!79.84!ELF1;;chr17:38020516..38020544,-!p5@IKZF3!1.13!12.36!IKZF3;;chr11:128392273..128392308,-!p2@ETS1!1.12!52.27!ETS1;;chr2:231090471..231090504,+!p2@SP140!1.09!11.41!SP140;;chr2:97202991..97203043,+!p3@ARID5A!1.09!11.41!ARID5A;;chr14:99738138..99738163,-!p1@BCL11B!1.09!11.41!BCL11B;;chr1:92951607..92951661,-!p1@GFI1!1.09!11.41!GFI1;;chr6:91006518..91006570,-!p1@BACH2!1.07!24.71!BACH2;;chr14:64970670..64970712,-!p3@ZBTB25!1.06!22.81!ZBTB25;;chr20:56195525..56195556,-!p2@ZBP1!1.06!10.45!ZBP1;;chr17:38020557..38020572,-!p4@IKZF3!1.06!10.45!IKZF3;;chr3:71542615..71542644,-!p12@FOXP1!1.06!10.45!FOXP1;;chr3:71542684..71542720,-!p18@FOXP1!1.06!10.45!FOXP1;;chr11:128563948..128564003,+!p1@FLI1!1.05!124.51!FLI1;;chr8:67525443..67525459,-!p2@MYBL1!1.05!15.21!MYBL1;;chr19:38085768..38085821,+!p1@ZNF540!1.04!15.21!ZNF540;;chr2:231090344..231090361,-!p3@SP110!1.02!9.50!SP110;;chr1:26697243..26697258,-!p1@ZNF683!1.02!9.50!ZNF683;;chr9:3525727..3525828,-!p2@RFX3!1.01!23.76!RFX3;;chr19:53289995..53290050,-!p1@ZNF600!1.00!38.02!ZNF600;;chr16:89787937..89787971,+!p1@ZNF276!1.00!23.76!ZNF276;;chr2:178128250..178128293,-!p6@NFE2L2!0.98!21.86!NFE2L2;;chr8:60031619..60031676,-!p1@TOX!0.98!19.01!TOX;;chr14:69262947..69262986,-!p3@ZFP36L1!0.98!10.45!ZFP36L1;;chr21:36421347..36421380,-!p8@RUNX1!0.98!8.55!RUNX1;;chr4:57522674..57522699,-!p5@HOPX!0.98!8.55!HOPX;;chr17:38020481..38020506,-!p7@IKZF3!0.98!8.55!IKZF3;;chr4:81104895..81104920,+!p2@PRDM8!0.96!12.36!PRDM8;;chr10:8096772..8096787,+!p2@GATA3!0.95!9.50!GATA3;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.56!RUNX1;;chr8:72756023..72756055,-!p6@MSC!0.93!9.50!MSC;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.60!CREB3L2;;chr4:109088089..109088101,-!p11@LEF1!0.93!7.60!LEF1;;chr3:71179699..71179744,-!p2@FOXP1!0.91!55.13!FOXP1;;chrX:101186981..101187030,-!p1@ZMAT1!0.90!23.76!ZMAT1;;chr6:91006575..91006602,-!p2@BACH2!0.90!10.45!BACH2;;chr6:45296048..45296082,+!p1@RUNX2!0.88!7.60!RUNX2;;chr4:109089901..109089930,-!p3@LEF1!0.88!6.65!LEF1;;chr1:61542922..61542955,+!p10@NFIA!0.88!6.65!NFIA;;chr16:89789271..89789291,+!p5@ZNF276!0.88!6.65!ZNF276;;chr7:21467674..21467727,+!p1@SP4!0.87!26.61!SP4;;chr8:67525473..67525518,-!p1@MYBL1!0.87!15.21!MYBL1;;chr16:68119324..68119364,+!p1@NFATC3!0.85!28.51!NFATC3;;chr11:128392309..128392350,-!p3@ETS1!0.83!14.26!ETS1;;chr16:3313791..3313834,+!p2@ZNF263!0.83!13.31!ZNF263;;chr18:5295679..5295734,-!p2@ZFP161!0.83!13.31!ZFP161;;chr14:99737850..99737852,-!p3@BCL11B!0.83!5.70!BCL11B;;chr16:89789248..89789270,+!p8@ZNF276!0.83!5.70!ZNF276;;chr6:106546731..106546755,+!p5@PRDM1!0.83!5.70!PRDM1;;chr6:391743..391759,+!p1@IRF4!0.83!5.70!IRF4;;chr7:50344289..50344323,+!p1@IKZF1!0.83!5.70!IKZF1;;chr3:18480217..18480239,-!p3@SATB1!0.83!5.70!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.83!5.70!LEF1;;chr4:109089573..109089585,-!p8@LEF1!0.83!5.70!LEF1;;chr4:57522513..57522548,-!p4@HOPX!0.83!5.70!HOPX;;chr10:8097591..8097627,+!p7@GATA3!0.83!5.70!GATA3;;chr1:26697189..26697205,-!p2@ZNF683!0.83!5.70!ZNF683;;chr19:58220517..58220583,-!p1@ZNF154!0.82!19.01!ZNF154;;chr19:19779686..19779697,+!p3@ZNF101!0.82!6.65!ZNF101;;chr2:97202480..97202499,+!p1@ARID5A!0.81!59.88!ARID5A;;chr19:52674696..52674758,-!p1@ZNF836!0.81!17.11!ZNF836;;chr8:123793860..123793921,+!p2@ZHX2!0.79!15.21!ZHX2;;chr2:148778973..148779035,+!p3@MBD5!0.79!14.26!MBD5;;chr16:89787973..89788001,+!p3@ZNF276!0.79!10.45!ZNF276;;chr19:19729477..19729542,-!p1@PBX4!0.78!11.41!PBX4;;chr1:45805693..45805718,+!p3@TOE1!0.78!11.41!TOE1;;chr6:15249128..15249177,+!p4@JARID2!0.78!9.50!JARID2;;chr17:46621311..46621332,-!p8@HOXB2!0.78!6.65!HOXB2;;chr4:4291837..4291859,-!p2@LYAR!0.77!17.11!LYAR;;chr19:9546177..9546224,-!p1@ZNF266!0.76!37.07!ZNF266;;chr9:114287433..114287513,+!p1@ZNF483!0.76!13.31!ZNF483;;chr17:36861735..36861755,+!p4@MLLT6!0.76!8.55!MLLT6;;chr3:141121847..141121868,+!p5@ZBTB38!0.76!7.60!ZBTB38;;chr2:242556880..242556899,-!p5@THAP4!0.76!4.75!THAP4;;chr4:109088130..109088163,-!p13@LEF1!0.76!4.75!LEF1;;chr15:31684663..31684717,+!p10@KLF13!0.76!4.75!KLF13;;chr15:67391010..67391046,+!p13@SMAD3!0.76!4.75!SMAD3;;chr20:52226313..52226350,-!p3@ZNF217!0.76!4.75!ZNF217;;chr5:142814241..142814278,-!p12@NR3C1!0.76!4.75!NR3C1;;chr7:50348268..50348366,+!p4@IKZF1!0.76!4.75!IKZF1;;chr9:32550965..32551031,-!p4@TOPORS!0.75!7.60!TOPORS;;chr4:185395191..185395226,-!p4@IRF2!0.75!6.65!IRF2;;chr10:8096631..8096660,+!p1@GATA3!0.75!5.70!GATA3;;chr14:64971288..64971316,-!p2@ZBTB25!0.74!15.21!ZBTB25;;chr3:141820622..141820635,-!p5@TFDP2!0.74!8.55!TFDP2;;chrX:131623932..131623964,-!p7@MBNL3!0.74!6.65!MBNL3;;chr5:131826457..131826514,-!p1@IRF1!0.73!194.84!IRF1;;chr1:10754477..10754517,-!p1@CASZ1!0.73!7.60!CASZ1;;chrX:131623982..131624011,-!p6@MBNL3!0.73!6.65!MBNL3;;chr9:117150303..117150312,-!p3@AKNA!0.73!5.70!AKNA;;chr4:81104865..81104886,+!p6@PRDM8!0.73!4.75!PRDM8;;chr19:49140609..49140643,-!p1@DBP!0.72!26.61!DBP;;chr10:35416142..35416169,+!p3@CREM!0.72!12.36!CREM;;chr19:20748574..20748599,-!p1@ZNF737!0.71!27.56!ZNF737;;chr19:9879350..9879419,-!p2@ZNF846!0.71!9.50!ZNF846;;chr5:43065197..43065244,+!p5@ZNF131!0.71!8.55!ZNF131;;chr19:57183114..57183145,-!p1@ZNF835!0.71!4.75!ZNF835;;chr5:172483347..172483407,+!p1@C5orf41!0.70!34.22!CREBRF;;chr20:44600199..44600219,-!p3@ZNF335!0.70!5.70!ZNF335;;chr9:3525867..3525902,-!p3@RFX3!0.69!15.21!RFX3;;chr8:72756063..72756125,-!p1@MSC!0.69!8.55!MSC;;chr19:49140572..49140594,-!p2@DBP!0.69!6.65!DBP;;chr19:16435523..16435619,+!p2@KLF2!0.69!5.70!KLF2;;chr14:65569101..65569119,-!p3@MAX!0.68!13.31!MAX;;chr19:2841497..2841523,+!p2@ZNF555!0.68!7.60!ZNF555;;chr6:45390269..45390298,+!p5@RUNX2!0.68!6.65!RUNX2;;chr6:106546786..106546802,+!p6@PRDM1!0.68!3.80!PRDM1;;chr7:50343510..50343521,+!p11@IKZF1!0.68!3.80!IKZF1;;chr7:50343800..50343811,+!p8@IKZF1!0.68!3.80!IKZF1;;chr7:92076686..92076700,+!p3@GATAD1!0.68!3.80!GATAD1;;chr8:60031534..60031553,-!p8@TOX!0.68!3.80!TOX;;chr3:18487057..18487105,-!p4@SATB1!0.68!3.80!SATB1;;chr3:63953415..63953430,+!p15@ATXN7!0.68!3.80!ATXN7;;chr3:71353892..71353928,-!p31@FOXP1!0.68!3.80!FOXP1;;chr4:149363475..149363492,-!p2@NR3C2!0.68!3.80!NR3C2;;chr17:38020607..38020621,-!p9@IKZF3!0.68!3.80!IKZF3;;chr19:53290078..53290089,-!p3@ZNF600!0.68!3.80!ZNF600;;chr1:25256175..25256228,-!p5@RUNX3!0.68!3.80!RUNX3;;chr20:57757940..57757966,+!p@chr20:57757940..57757966,+!0.68!3.80!ZNF831;;chr21:36421147..36421193,-!p10@RUNX1!0.68!3.80!RUNX1;;chr4:38665769..38665801,+!p2@KLF3!0.67!38.02!KLF3;;chr19:58144529..58144579,+!p1@ZNF211!0.67!22.81!ZNF211;;chr3:129158854..129158883,-!p3@MBD4!0.67!20.91!MBD4;;chr19:21579908..21579949,+!p1@ZNF493!0.66!24.71!ZNF493;;chr11:65687158..65687216,+!p4@DRAP1!0.66!23.76!DRAP1;;chrX:134477924..134477988,-!p1@ZNF75D!0.66!15.21!ZNF75D;;chr9:2016724..2016752,+!p7@SMARCA2!0.66!7.60!SMARCA2;;chr19:35455110..35455149,-!p1@ZNF792!0.66!7.60!ZNF792;;chr6:42419649..42419673,-!p3@TRERF1!0.66!6.65!TRERF1;;chr7:64838786..64838809,+!p2@ZNF92!0.65!22.81!ZNF92;;chr2:208394817..208394834,+!p3@CREB1!0.65!16.16!CREB1;;chr19:58238958..58239000,-!p1@ZNF671!0.65!16.16!ZNF671;;chr7:99156393..99156433,+!p6@ZNF655!0.65!8.55!ZNF655;;chr13:27998854..27998866,+!p3@GTF3A!0.65!7.60!GTF3A;;chr11:16759983..16760029,-!p2@SOX6!0.65!5.70!SOX6;;chr10:44144292..44144338,-!p1@ZNF32!0.64!25.66!ZNF32;;chrX:106960221..106960236,-!p3@TSC22D3!0.64!10.45!TSC22D3;;chr19:8942962..8942987,-!p1@ZNF558!0.64!10.45!ZNF558;;chr1:211432887..211432903,+!p4@RCOR3!0.64!8.55!RCOR3;;chr7:21467642..21467671,+!p2@SP4!0.64!8.55!SP4;;chr6:15249097..15249115,+!p7@JARID2!0.64!4.75!JARID2;;chr4:140005443..140005527,-!p2@ELF2!0.63!22.81!ELF2;;chr19:44598534..44598559,+!p2@ZNF224!0.63!11.41!ZNF224;;chr3:114819124..114819200,-!p3@ZBTB20!0.63!8.55!ZBTB20;;chr11:13299319..13299424,+!p1@ARNTL!0.62!38.02!ARNTL;;chr7:99097863..99097936,-!p1@ZNF394!0.62!38.02!ZNF394;;chr2:208031542..208031595,-!p2@KLF7!0.62!26.61!KLF7;;chr6:12008986..12009016,+!p3@HIVEP1!0.62!11.41!HIVEP1;;chr19:37341160.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000625;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051,CL:0000790
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12180.12196-129B9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12180.12196-129B9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12180.12196-129B9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12180.12196-129B9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12180.12196-129B9.hg38.nobarcode.ctss.bed.gz
 |id=FF:12196-129B9
 |is_a=EFO:0002091;;FF:0000030;;FF:0000210
 |is_obsolete=
+|library_id=CNhs12180!RDhi10016
+|library_id_phase_based=2:CNhs12180
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12196
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12196
 |name=CD8+ T Cells (pluriselect), donor090309, donation3
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12180,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 79: @@
 |rna_weight_ug=1.66158
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@@ Line 84: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12196-129B9;search_select_hide=table117:FF:12196-129B9
 }}

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FF:12196-129B9: Difference between revisions

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Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0