FF:12199-129C3: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD19+ B Cells (pluriselect), donor090309, donation3
Species:	Human (Homo sapiens)
Library ID:	CNhs12181,RDhi10009
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	b cell
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013689

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12181		CAGE		DRX008052		DRR008924
RDhi10009		RNA-Seq		DRX012343		DRR013791

Accession ID Hg19

Library id		BAM		CTSS
CNhs12181		DRZ000349		DRZ001734
RDhi10009		DRZ002992

Accession ID Hg38

Library id		BAM		CTSS
CNhs12181		DRZ011699		DRZ013084
RDhi10009

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0728
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.221
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.206
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.357
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.314
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.444
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.446
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.659
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.258
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.338
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.17
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.588
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.218
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.573
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.276
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	1.033
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.519
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.276
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	1.099
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.746
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12181

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.74166e-6
MA0003.1	MA0003.1	0.567
MA0004.1	MA0004.1	0.3
MA0006.1	MA0006.1	0.379
MA0007.1	MA0007.1	0.783
MA0009.1	MA0009.1	0.798
MA0014.1	MA0014.1	0.881
MA0017.1	MA0017.1	0.091
MA0018.2	MA0018.2	0.994
MA0019.1	MA0019.1	0.705
MA0024.1	MA0024.1	0.851
MA0025.1	MA0025.1	0.645
MA0027.1	MA0027.1	0.81
MA0028.1	MA0028.1	3.94867e-5
MA0029.1	MA0029.1	0.727
MA0030.1	MA0030.1	0.0225
MA0031.1	MA0031.1	0.0503
MA0035.2	MA0035.2	0.443
MA0038.1	MA0038.1	0.111
MA0039.2	MA0039.2	0.758
MA0040.1	MA0040.1	0.947
MA0041.1	MA0041.1	0.16
MA0042.1	MA0042.1	0.805
MA0043.1	MA0043.1	0.806
MA0046.1	MA0046.1	0.976
MA0047.2	MA0047.2	0.165
MA0048.1	MA0048.1	0.451
MA0050.1	MA0050.1	9.38537e-12
MA0051.1	MA0051.1	4.97101e-5
MA0052.1	MA0052.1	0.243
MA0055.1	MA0055.1	0.76
MA0057.1	MA0057.1	0.705
MA0058.1	MA0058.1	0.201
MA0059.1	MA0059.1	0.272
MA0060.1	MA0060.1	0.391
MA0061.1	MA0061.1	1.41794e-4
MA0062.2	MA0062.2	3.32705e-14
MA0065.2	MA0065.2	0.0276
MA0066.1	MA0066.1	0.592
MA0067.1	MA0067.1	0.608
MA0068.1	MA0068.1	0.369
MA0069.1	MA0069.1	0.553
MA0070.1	MA0070.1	0.705
MA0071.1	MA0071.1	0.741
MA0072.1	MA0072.1	0.535
MA0073.1	MA0073.1	0.821
MA0074.1	MA0074.1	0.704
MA0076.1	MA0076.1	6.50952e-8
MA0077.1	MA0077.1	0.416
MA0078.1	MA0078.1	0.744
MA0079.2	MA0079.2	0.31
MA0080.2	MA0080.2	4.29764e-11
MA0081.1	MA0081.1	2.06019e-4
MA0083.1	MA0083.1	0.0609
MA0084.1	MA0084.1	0.335
MA0087.1	MA0087.1	0.341
MA0088.1	MA0088.1	0.119
MA0090.1	MA0090.1	4.34032e-4
MA0091.1	MA0091.1	0.884
MA0092.1	MA0092.1	0.82
MA0093.1	MA0093.1	0.343
MA0099.2	MA0099.2	2.25179e-4
MA0100.1	MA0100.1	0.155
MA0101.1	MA0101.1	0.0229
MA0102.2	MA0102.2	0.301
MA0103.1	MA0103.1	0.0105
MA0104.2	MA0104.2	0.0858
MA0105.1	MA0105.1	7.27834e-7
MA0106.1	MA0106.1	0.464
MA0107.1	MA0107.1	0.0129
MA0108.2	MA0108.2	1.23173e-8
MA0111.1	MA0111.1	0.356
MA0112.2	MA0112.2	0.0236
MA0113.1	MA0113.1	0.892
MA0114.1	MA0114.1	0.0963
MA0115.1	MA0115.1	0.341
MA0116.1	MA0116.1	2.29382e-5
MA0117.1	MA0117.1	0.75
MA0119.1	MA0119.1	0.52
MA0122.1	MA0122.1	0.656
MA0124.1	MA0124.1	0.647
MA0125.1	MA0125.1	0.833
MA0131.1	MA0131.1	0.0781
MA0135.1	MA0135.1	0.0278
MA0136.1	MA0136.1	3.9392e-17
MA0137.2	MA0137.2	0.977
MA0138.2	MA0138.2	0.631
MA0139.1	MA0139.1	0.197
MA0140.1	MA0140.1	0.171
MA0141.1	MA0141.1	0.917
MA0142.1	MA0142.1	0.145
MA0143.1	MA0143.1	0.525
MA0144.1	MA0144.1	0.581
MA0145.1	MA0145.1	0.683
MA0146.1	MA0146.1	0.347
MA0147.1	MA0147.1	0.0934
MA0148.1	MA0148.1	0.484
MA0149.1	MA0149.1	0.097
MA0150.1	MA0150.1	0.385
MA0152.1	MA0152.1	0.308
MA0153.1	MA0153.1	0.0433
MA0154.1	MA0154.1	4.95108e-4
MA0155.1	MA0155.1	0.709
MA0156.1	MA0156.1	1.83974e-13
MA0157.1	MA0157.1	0.0859
MA0159.1	MA0159.1	0.0401
MA0160.1	MA0160.1	0.454
MA0162.1	MA0162.1	0.988
MA0163.1	MA0163.1	8.63212e-9
MA0164.1	MA0164.1	0.857
MA0258.1	MA0258.1	0.121
MA0259.1	MA0259.1	0.394

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12181

Novel motif	Logo	P-value
1	1	0.0921
10	10	0.0366
100	100	0.6
101	101	0.278
102	102	0.93
103	103	0.0434
104	104	0.111
105	105	0.322
106	106	0.834
107	107	0.384
108	108	0.32
109	109	0.0647
11	11	0.0808
110	110	0.149
111	111	0.114
112	112	0.34
113	113	0.0289
114	114	0.415
115	115	0.851
116	116	0.779
117	117	0.00232
118	118	0.109
119	119	0.497
12	12	0.853
120	120	0.572
121	121	0.458
122	122	0.343
123	123	0.0251
124	124	0.139
125	125	0.34
126	126	0.252
127	127	0.643
128	128	0.428
129	129	0.556
13	13	0.542
130	130	0.542
131	131	0.846
132	132	0.375
133	133	0.00109
134	134	0.606
135	135	0.512
136	136	0.499
137	137	0.141
138	138	0.45
139	139	0.112
14	14	0.462
140	140	0.542
141	141	0.314
142	142	0.302
143	143	0.0334
144	144	0.814
145	145	0.24
146	146	0.0979
147	147	0.108
148	148	0.123
149	149	0.267
15	15	0.13
150	150	0.549
151	151	0.927
152	152	0.374
153	153	0.432
154	154	0.896
155	155	0.0075
156	156	0.398
157	157	0.244
158	158	0.1
159	159	0.177
16	16	0.936
160	160	0.272
161	161	0.067
162	162	0.8
163	163	0.297
164	164	0.614
165	165	0.619
166	166	0.477
167	167	0.143
168	168	0.196
169	169	0.55
17	17	0.922
18	18	0.623
19	19	0.74
2	2	0.771
20	20	0.66
21	21	0.641
22	22	0.871
23	23	0.678
24	24	0.495
25	25	0.0304
26	26	0.16
27	27	0.224
28	28	0.421
29	29	0.0582
3	3	0.0499
30	30	0.417
31	31	0.749
32	32	0.232
33	33	0.517
34	34	0.955
35	35	0.109
36	36	0.0239
37	37	0.199
38	38	0.325
39	39	0.393
4	4	0.613
40	40	0.242
41	41	0.169
42	42	0.113
43	43	0.156
44	44	0.389
45	45	0.962
46	46	0.181
47	47	0.0788
48	48	0.163
49	49	0.0998
5	5	0.358
50	50	0.792
51	51	0.462
52	52	0.425
53	53	0.515
54	54	0.836
55	55	0.0955
56	56	0.749
57	57	0.384
58	58	0.0239
59	59	0.343
6	6	0.851
60	60	0.491
61	61	0.0499
62	62	0.0296
63	63	0.77
64	64	0.224
65	65	0.691
66	66	0.638
67	67	0.461
68	68	0.689
69	69	0.655
7	7	0.138
70	70	0.095
71	71	0.0403
72	72	0.0681
73	73	0.758
74	74	0.182
75	75	0.0115
76	76	0.0698
77	77	0.533
78	78	0.175
79	79	0.705
8	8	0.495
80	80	0.0111
81	81	0.166
82	82	0.162
83	83	0.658
84	84	0.436
85	85	0.593
86	86	0.126
87	87	0.266
88	88	0.657
89	89	0.927
9	9	0.485
90	90	0.0284
91	91	0.53
92	92	0.356
93	93	0.825
94	94	0.0483
95	95	0.00953
96	96	0.618
97	97	0.391
98	98	0.116
99	99	0.0396

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12181

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007945!RNA-Seq@DRS012111
+|DRA_sample_Accession=RNA-Seq@SAMD00013689
+|accession_numbers=CAGE;DRX008052;DRR008924;DRZ000349;DRZ001734;DRZ011699;DRZ013084!RNA-Seq;DRX012343;DRR013791;DRZ002992;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.55!352.25!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.44!277.53!SPIB;;chr2:100759010..100759035,-!p1@AFF3!2.42!263.29!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.22!165.45!POU2AF1;;chr2:100759037..100759058,-!p2@AFF3!2.09!122.75!AFF3;;chr6:391743..391759,+!p1@IRF4!2.09!122.75!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.05!111.19!SPI1;;chr6:91006518..91006570,-!p1@BACH2!2.04!238.39!BACH2;;chr2:231090433..231090469,+!p1@SP140!2.02!104.07!SP140;;chr2:231090471..231090504,+!p2@SP140!2.00!99.63!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.96!90.73!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.85!510.58!MEF2C;;chr2:68592406..68592424,+!p1@PLEK!1.80!61.38!PLEK;;chr8:86099884..86099918,+!p4@E2F5!1.76!56.93!E2F5;;chr3:71355163..71355209,-!p5@FOXP1!1.72!71.16!FOXP1;;chr3:32023232..32023273,+!p1@ZNF860!1.69!66.71!ZNF860;;chr7:50344251..50344288,+!p3@IKZF1!1.69!48.03!IKZF1;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.59!IKZF1;;chr2:100758991..100759009,-!p3@AFF3!1.64!42.70!AFF3;;chr2:60780607..60780624,-!p2@BCL11A!1.60!115.64!BCL11A;;chr6:91006575..91006602,-!p2@BACH2!1.60!56.93!BACH2;;chr19:16435625..16435682,+!p1@KLF2!1.55!1052.29!KLF2;;chr5:158526756..158526797,-!p3@EBF1!1.54!33.80!EBF1;;chr17:38020557..38020572,-!p4@IKZF3!1.51!31.13!IKZF3;;chr2:60781201..60781258,-!p3@BCL11A!1.46!27.57!BCL11A;;chr19:13213662..13213686,-!p1@LYL1!1.44!39.14!LYL1;;chr20:56195474..56195506,-!p1@ZBP1!1.41!24.91!ZBP1;;chr2:231090344..231090361,-!p3@SP110!1.41!24.91!SP110;;chr4:57522513..57522548,-!p4@HOPX!1.37!22.24!HOPX;;chr4:185395633..185395651,-!p2@IRF2!1.35!33.80!IRF2;;chr7:50344289..50344323,+!p1@IKZF1!1.33!20.46!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!1.32!121.86!ELF1;;chr2:60778035..60778060,-!p4@BCL11A!1.31!23.13!BCL11A;;chr8:86089627..86089653,+!p3@E2F5!1.31!22.24!E2F5;;chr7:50348268..50348366,+!p4@IKZF1!1.31!19.57!IKZF1;;chr8:86089531..86089544,+!p7@E2F5!1.31!19.57!E2F5;;chr17:37934204..37934241,-!p3@IKZF3!1.31!19.57!IKZF3;;chr5:88179017..88179046,-!p2@MEF2C!1.29!72.05!MEF2C;;chr10:94449703..94449718,+!p1@HHEX!1.28!68.49!HHEX;;chr1:25256756..25256774,-!p1@RUNX3!1.27!32.91!RUNX3;;chr2:100759060..100759073,-!p8@AFF3!1.27!17.79!AFF3;;chr19:42636586..42636607,-!p1@POU2F2!1.25!46.25!POU2F2;;chr18:52989031..52989079,-!p2@TCF4!1.25!39.14!TCF4;;chr17:38020516..38020544,-!p5@IKZF3!1.25!16.90!IKZF3;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.46!SATB1;;chr7:64838786..64838809,+!p2@ZNF92!1.23!89.84!ZNF92;;chr19:13213704..13213726,-!p3@LYL1!1.23!21.35!LYL1;;chr6:91006503..91006517,-!p3@BACH2!1.23!16.01!BACH2;;chr7:77469439..77469459,+!p6@PHTF2!1.23!16.01!PHTF2;;chr2:68592394..68592405,+!p2@PLEK!1.23!16.01!PLEK;;chr3:71409904..71409927,-!p46@FOXP1!1.23!16.01!FOXP1;;chr4:185395590..185395627,-!p3@IRF2!1.21!18.68!IRF2;;chr3:71631151..71631194,-!p15@FOXP1!1.21!16.90!FOXP1;;chr1:151319654..151319698,-!p2@RFX5!1.20!32.02!RFX5;;chr14:75988771..75988826,+!p1@BATF!1.20!19.57!BATF;;chr9:117150254..117150271,-!p1@AKNA!1.18!38.25!AKNA;;chr17:38020607..38020621,-!p9@IKZF3!1.18!14.23!IKZF3;;chr16:85936412..85936431,+!p2@IRF8!1.16!13.34!IRF8;;chr17:45810594..45810608,+!p1@TBX21!1.16!13.34!TBX21;;chr19:36204309..36204335,+!p1@ZBTB32!1.16!13.34!ZBTB32;;chr2:61108695..61108753,+!p1@REL!1.15!88.95!REL;;chr11:128563948..128564003,+!p1@FLI1!1.14!154.77!FLI1;;chrX:106960221..106960236,-!p3@TSC22D3!1.13!34.69!TSC22D3;;chr7:64126535..64126559,+!p2@ZNF107!1.13!26.69!ZNF107;;chr9:37034186..37034216,-!p2@PAX5!1.13!12.45!PAX5;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.79!NFATC2;;chr4:81104895..81104920,+!p2@PRDM8!1.11!17.79!PRDM8;;chrX:106960180..106960197,-!p2@TSC22D3!1.10!44.48!TSC22D3;;chr19:19779619..19779670,+!p1@ZNF101!1.10!32.91!ZNF101;;chr10:94449675..94449694,+!p2@HHEX!1.10!31.13!HHEX;;chr14:69262947..69262986,-!p3@ZFP36L1!1.10!14.23!ZFP36L1;;chr3:18487057..18487105,-!p4@SATB1!1.10!11.56!SATB1;;chr19:58220517..58220583,-!p1@ZNF154!1.08!35.58!ZNF154;;chr9:3525727..3525828,-!p2@RFX3!1.07!27.57!RFX3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.67!IKZF1;;chr7:63505799..63505904,+!p1@ZNF727!1.07!10.67!ZNF727;;chr19:45579725..45579743,-!p1@ZNF296!1.06!48.03!ZNF296;;chr19:36391434..36391450,-!p1@NFKBID!1.05!20.46!NFKBID;;chrX:106960285..106960299,-!p1@TSC22D3!1.04!271.30!TSC22D3;;chr10:104154246..104154347,+!p3@NFKB2!1.04!61.38!NFKB2;;chr10:94451574..94451587,+!p6@HHEX!1.03!9.78!HHEX;;chr17:56565257..56565283,-!p2@HSF5!1.03!9.78!HSF5;;chr19:22193731..22193751,-!p1@ZNF208!1.03!9.78!ZNF208;;chrX:101186981..101187030,-!p1@ZMAT1!1.02!31.13!ZMAT1;;chr2:231084659..231084721,-!p1@SP110!1.00!211.70!SP110;;chr9:37027156..37027193,-!p4@PAX5!1.00!8.90!PAX5;;chr9:37003148..37003152,-!p5@PAX5!1.00!8.90!PAX5;;chr1:167298300..167298319,+!p2@POU2F1!1.00!8.90!POU2F1;;chr7:77428066..77428132,+!p2@PHTF2!0.99!58.71!PHTF2;;chr6:144385698..144385742,-!p2@PLAGL1!0.99!10.67!PLAGL1;;chr19:20748574..20748599,-!p1@ZNF737!0.97!51.59!ZNF737;;chr11:128392273..128392308,-!p2@ETS1!0.97!36.47!ETS1;;chrX:56258844..56258882,+!p1@KLF8!0.97!11.56!KLF8;;chr2:61108650..61108687,+!p2@REL!0.96!40.92!REL;;chrX:131623044..131623089,-!p1@MBNL3!0.96!34.69!MBNL3;;chr14:64971288..64971316,-!p2@ZBTB25!0.96!25.80!ZBTB25;;chr21:36421535..36421610,-!p2@RUNX1!0.95!29.35!RUNX1;;chr16:3313791..3313834,+!p2@ZNF263!0.95!17.79!ZNF263;;chr17:38020481..38020506,-!p7@IKZF3!0.95!8.01!IKZF3;;chr11:47400062..47400077,-!p2@SPI1!0.95!8.01!SPI1;;chr2:100759076..100759088,-!p10@AFF3!0.95!8.01!AFF3;;chr7:64126503..64126528,+!p1@ZNF107!0.94!56.04!ZNF107;;chr5:88179195..88179224,-!p3@MEF2C!0.94!12.45!MEF2C;;chr2:145277640..145277771,-!p1@ZEB2!0.92!102.29!ZEB2;;chr11:128392085..128392232,-!p1@ETS1!0.91!252.62!ETS1;;chr3:71179699..71179744,-!p2@FOXP1!0.91!55.15!FOXP1;;chr3:71630844..71630862,-!p40@FOXP1!0.91!7.12!FOXP1;;chr5:88120151..88120177,-!p6@MEF2C!0.91!7.12!MEF2C;;chr17:37934188..37934202,-!p8@IKZF3!0.91!7.12!IKZF3;;chr19:13213954..13214021,-!p4@LYL1!0.91!7.12!LYL1;;chr4:185395191..185395226,-!p4@IRF2!0.90!9.78!IRF2;;chr2:208031542..208031595,-!p2@KLF7!0.89!50.70!KLF7;;chr16:88752889..88752921,-!p1@SNAI3!0.89!8.01!SNAI3;;chr1:158979686..158979745,+!p1@IFI16!0.87!224.16!IFI16;;chr19:11959532..11959593,+!p1@ZNF439!0.87!25.80!ZNF439;;chr8:125985531..125985571,+!p1@ZNF572!0.87!13.34!ZNF572;;chr18:42260030..42260055,+!p3@SETBP1!0.87!8.01!SETBP1;;chr19:11877838..11877915,+!p1@ZNF441!0.86!20.46!ZNF441;;chr6:41700616..41700664,-!p8@TFEB!0.86!6.23!TFEB;;chr7:150102756..150102772,+!p5@ZNF775!0.86!6.23!ZNF775;;chr3:71631248..71631268,-!p26@FOXP1!0.86!6.23!FOXP1;;chr4:57522476..57522500,-!p7@HOPX!0.86!6.23!HOPX;;chr19:58694742..58694800,+!p2@ZNF274!0.85!25.80!ZNF274;;chr2:231280954..231280965,+!p2@SP100!0.85!11.56!SP100;;chr19:37997297..37997362,+!p3@ZNF793!0.84!9.78!ZNF793;;chrX:106960249..106960260,-!p5@TSC22D3!0.84!9.78!TSC22D3;;chr14:74226961..74227020,-!p1@C14orf43!0.83!40.92!C14orf43;;chr8:123793860..123793921,+!p2@ZHX2!0.83!16.90!ZHX2;;chr16:30583169..30583200,-!p2@ZNF688!0.83!8.90!ZNF688;;chr19:38085768..38085821,+!p1@ZNF540!0.83!8.90!ZNF540;;chr19:19976683..19976709,+!p1@ZNF253!0.82!26.69!ZNF253;;chr7:21467674..21467727,+!p1@SP4!0.82!24.02!SP4;;chr2:178128250..178128293,-!p6@NFE2L2!0.82!15.12!NFE2L2;;chr6:157098579..157098634,+!p4@ARID1B!0.82!13.34!ARID1B;;chr18:52989081..52989117,-!p7@TCF4!0.82!8.90!TCF4;;chr13:41240737..41240787,-!p1@FOXO1!0.81!69.38!FOXO1;;chr7:64838754..64838778,+!p1@ZNF92!0.81!56.93!ZNF92;;chr1:14026671..14026705,+!p2@PRDM2!0.81!35.58!PRDM2;;chr19:22235279..22235301,+!p1@ZNF257!0.81!10.67!ZNF257;;chr7:128577972..128578047,+!p1@IRF5!0.81!8.90!IRF5;;chr19:57183114..57183145,-!p1@ZNF835!0.81!6.23!ZNF835;;chr3:129158768..129158819,-!p1@MBD4!0.80!88.95!MBD4;;chr19:9546177..9546224,-!p1@ZNF266!0.80!40.92!ZNF266;;chr19:58238958..58239000,-!p1@ZNF671!0.80!23.13!ZNF671;;chr1:27023752..27023799,+!p4@ARID1A!0.80!7.12!ARID1A;;chr4:57522166..57522260,-!p2@HOPX!0.80!6.23!HOPX;;chr5:158526709..158526741,-!p7@EBF1!0.80!5.34!EBF1;;chr8:86089498..86089519,+!p6@E2F5!0.80!5.34!E2F5;;chr14:69263043..69263069,-!p8@ZFP36L1!0.80!5.34!ZFP36L1;;chr9:37034469..37034474,-!p1@PAX5!0.80!5.34!PAX5;;chr2:231191875..231191918,+!p1@SP140L!0.79!55.15!SP140L;;chr16:68119324..68119364,+!p1@NFATC3!0.79!24.91!NFATC3;;chr9:117160738..117160782,-!p2@AKNA!0.79!23.13!AKNA;;chrX:56258811..56258838,+!p2@KLF8!0.79!7.12!KLF8;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.57!ZBTB20;;chr1:45805693..45805718,+!p3@TOE1!0.78!11.56!TOE1;;chr19:12075844..12075880,+!p3@ZNF763!0.78!8.90!ZNF763;;chr7:64363638..64363667,+!p1@ZNF273!0.77!26.69!ZNF273;;chr20:46130672..46130686,+!p2@NCOA3!0.77!24.02!NCOA3;;chr4:81104865..81104886,+!p6@PRDM8!0.77!5.34!PRDM8;;chr6:130339710..130339745,+!p1@L3MBTL3!0.76!41.81!L3MBTL3;;chr1:91487836..91487854,-!p3@ZNF644!0.76!11.56!ZNF644;;chr6:43337124..43337144,-!p4@ZNF318!0.76!7.12!ZNF318;;chr18:52989001..52989030,-!p10@TCF4!0.76!5.34!TCF4;;chr17:4981745..4981810,+!p1@ZFP3!0.75!24.91!ZFP3;;chr10:35416142..35416169,+!p3@CREM!0.75!13.34!CREM;;chr14:64970670..64970712,-!p3@ZBTB25!0.75!10.67!ZBTB25;;chr11:67007548..67007610,+!p3@KDM2A!0.74!37.36!KDM2A;;chr19:58144529..58144579,+!p1@ZNF211!0.74!26.69!ZNF211;;chr19:53289995..53290050,-!p1@ZNF600!0.74!20.46!ZNF600;;chr1:8763463..8763499,-!p6@RERE!0.74!13.34!RERE;;chr18:5295679..5295734,-!p2@ZFP161!0.74!10.67!ZFP161;;chr16:85936539..85936562,+!p3@IRF8!0.74!4.45!IRF8;;chr13:41593405..41593416,-!p9@ELF1!0.74!4.45!ELF1;;chr6:41691289..41691312,-!p9@TFEB!0.74!4.45!TFEB;;chr6:41701581..41701613,-!p2@TFEB!0.74!4.45!TFEB;;chr7:108209925..108209941,-!p2@THAP5!0.74!4.45!THAP5;;chr7:50344144..50344157,+!p6@IKZF1!0.74!4.45!IKZF1;;chr3:114173720..114173794,-!p6@ZBTB20!0.74!4.45!ZBTB20;;chr3:71353892..71353928,-!p31@FOXP1!0.74!4.45!FOXP1;;chr3:71631217..71631234,-!p33@FOXP1!0.74!4.45!FOXP1;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.45!HOPX;;chr5:131826457..131826514,-!p1@IRF1!0.73!191.24!IRF1;;chr6:43337180..43337244,-!p1@ZNF318!0.73!18.68!ZNF318;;chr16:71918033..71918101,-!p1@ZNF821!0.73!17.79!ZNF821;;chr10:43932296..43932360,+!p1@ZNF487P!0.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1;;chr19:56154958..56155027,+!p1@ZNF581!0.43!80.95!ZNF581;;chr15:41952591..41952672,+!p1@MGA!0.43!32.02!MGA;;chr6:87865262..87865311,+!p1@ZNF292!0.43!32.02!ZNF292;;chr9:2015335..2015370,+!p1@SMARCA2!0.43!29.35!SMARCA2;;chr9:73028814..73028895,-!p1@KLF9!0.43!24.02!KLF9;;chr4:18023350..18023385,-!p1@LCORL!0.43!20.46!LCORL;;chrX:47342565..47342638,-!p1@ZNF41!0.43!13.34!ZNF41;;chr2:174830084..174830108,-!p4@SP3!0.43!8.90!SP3;;chr2:157198916..157198978,-!p2@NR4A2!0.43!8.01!NR4A2;;chr4:57775059..57775139,+!p2@REST!0.43!8.01!REST;;chr19:53238260..53238312,-!p1@ZNF611!0.43!8.01!ZNF611;;chr19:37096194..37096235,+!p1@ZNF382!0.43!7.12!ZNF382;;chr19:37096139..37096170,-!p2@ZNF529!0.43!6.23!ZNF529;;chr19:56111639..56111668,+!p2@ZNF524!0.43!6.23!ZNF524;;chr12:72058060..72058101,+!p5@THAP2!0.43!5.34!THAP2;;chr12:133706820..133706881,-!p1@ZNF891!0.43!4.45!ZNF891;;chr12:80084862..80084884,-!p7@PAWR!0.43!4.45!PAWR;;chr20:42143077..42143126,+!p1@L3MBTL1!0.43!4.45!L3MBTL;;chr14:45722335..45722348,-!p3@MIS18BP1!0.43!3.56!MIS18BP1;;chr17:41277479..41277510,-!p5@BRCA1!0.43!2.67!BRCA1;;chr18:53257068..53257086,-!p12@TCF4!0.43!2.67!TCF4;;chr2:192015701..192015743,-!p1@STAT4!0.43!2.67!STAT4;;chr1:37940170..37940190,+!p1@ZC3H12A!0.42!29.35!ZC3H12A;;chr2:113033164..113033219,+!p1@ZC3H6!0.42!19.57!ZC3H6;;chr12:53773944..53773993,+!p1@SP1!0.42!19.57!SP1;;chr3:75834687..75834720,-!p1@ZNF717!0.42!11.56!ZNF717;;chr6:28317685..28317761,+!p1@ZKSCAN3!0.42!11.56!ZKSCAN3;;chr12:96588279..96588299,+!p4@ELK3!0.42!10.67!ELK3;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!0.42!8.01!ZNF670;;chr10:38146510..38146576,-!p1@ZNF248!0.42!6.23!ZNF248;;chr13:74708029..74708077,-!p2@KLF12!0.42!6.23!KLF12;;chr9:32550839..32550962,-!p3@TOPORS!0.42!5.34!TOPORS;;chr19:56988677..56988729,-!p1@ZNF667!0.42!3.56!ZNF667;;chr7:64254834..64254854,+!p2@ZNF138!0.42!3.56!ZNF138;;chr10:21823218..21823240,+!p3@MLLT10!0.42!3.56!MLLT10;;chr11:130184311..130184362,-!p4@ZBTB44!0.42!3.56!ZBTB44;;chr2:214015111..214015179,-!p1@IKZF2!0.42!3.56!IKZF2;;chr3:141820622..141820635,-!p5@TFDP2!0.42!3.56!TFDP2;;chrX:131623932..131623964,-!p7@MBNL3!0.42!2.67!MBNL3;;chr5:142782823..142782854,-!p3@NR3C1!0.42!2.67!NR3C1;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.41!104.07!TBX19;;chr18:51750948..51751059,-!p1@MBD2!0.41!73.83!MBD2;;chr4:103422499..103422632,+!p1@NFKB1!0.41!48.92!NFKB1;;chr19:52873166..52873208,+!p1@ZNF880!0.41!32.02!ZNF880;;chr19:57791806..57791875,+!p1@ZNF460!0.41!28.46!ZNF460;;chr19:53935221..53935258,+!p1@ZNF761!0.41!23.13!ZNF761;;chr12:53574464..53574539,+!p1@ZNF740!0.41!22.24!ZNF740;;chr17:47439437..47439533,-!p1@ZNF652!0.41!18.68!ZNF652;;chr3:23986824..23986848,+!p2@NR1D2!0.41!12.45!NR1D2;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.41!9.78!ZNF222;;chr8:57123815..57123867,-!p1@PLAG1!0.41!8.90!PLAG1;;chr19:24097675..24097699,+!p1@ZNF726!0.41!7.12!ZNF726;;chr19:52674696..52674758,-!p1@ZNF836!0.41!6.23!ZNF836;;chr19:38085633..38085706,-!p1@ZNF571!0.41!5.34!ZNF571;;chr9:114287433..114287513,+!p1@ZNF483!0.41!5.34!ZNF483;;chr2:97202451..97202462,+!p2@ARID5A!0.41!4.45!ARID5A;;chr19:58400344..58400364,-!p2@ZNF814!0.41!2.67!ZNF814;;chr6:28220002..28220020,-!p3@ZKSCAN4!0.41!2.67!ZKSCAN4;;chrX:84499081..84499115,+!p2@ZNF711!0.41!2.67!ZNF711;;chr20:46130846..46130869,+!p5@NCOA3!0.41!1.78!NCOA3;;chr4:185395672..185395710,-!p1@IRF2!0.40!61.38!IRF2;;chr19:53606636..53606692,-!p1@ZNF160!0.40!40.92!ZNF160;;chr11:9482551..9482580,+!p1@ZNF143!0.40!29.35!ZNF143;;chr19:58609577..58609628,-!p1@ZSCAN18!0.40!28.46!ZSCAN18;;chr2:208394627..208394655,+!p2@CREB1!0.40!18.68!CREB1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.40!14.23!ZNF580;;chr10:44144292..44144338,-!p1@ZNF32!0.40!14.23!ZNF32;;chr5:180288248..180288291,-!p1@ZFP62!0.40!13.34!ZFP62;;chr8:28243661..28243709,-!p1@ZNF395!0.40!12.45!ZNF395;;chr16:69419749..69419786,-!p2@TERF2!0.40!12.45!TERF2;;chr4:140005341..140005411,-!p3@ELF2!0.40!11.56!ELF2;;chr17:16472486..16472533,-!p1@ZNF287!0.40!10.67!ZNF287;;chr17:11900745..11900804,-!p1@ZNF18!0.40!8.01!ZNF18;;chr19:58111241..58111292,+!p1@ZNF530!0.40!7.12!ZNF530;;chr13:74708411..74708436,-!p3@KLF12!0.40!6.23!KLF12;;chr14:45722287..45722308,-!p2@MIS18BP1!0.40!5.34!MIS18BP1;;chr19:37958318..37958365,-!p2@ZNF569!0.40!5.34!ZNF569;;chr2:208394728..208394739,+!p5@CREB1!0.40!4.45!CREB1;;chr19:11708311..11708332,+!p2@ZNF627!0.40!3.56!ZNF627;;chr1:67395855..67395872,+!p5@MIER1!0.40!2.67!MIER1;;chr1:151319283..151319314,-!p4@RFX5!0.40!1.78!RFX5;;chr1:155829208..155829230,-!p3@GON4L!0.40!1.78!GON4L;;chr8:128750143..128750160,+!p19@MYC!0.40!1.78!MYC;;chr16:3930681..3930721,-!p1@CREBBP!0.39!38.25!CREBBP;;chr4:76439665..76439699,+!p1@THAP6!0.39!30.24!THAP6;;chr1:205601093..205601158,-!p1@ELK4!0.39!19.57!ELK4;;chr6:157098775..157098820,+!p1@ARID1B!0.39!18.68!ARID1B;;chr12:133657477..133657529,+!p1@ZNF140!0.39!16.90!ZNF140;;chr19:58427951..58427984,-!p1@ZNF417!0.39!15.12!ZNF417;;chr19:57831829..57831890,+!p1@ZNF543!0.39!13.34!ZNF543;;chr19:12251144..12251181,-!p2@ZNF20!0.39!8.90!ZNF20;;chr19: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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation3.CNhs12181.12199-129C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:12199-129C3
 |is_a=EFO:0002091;;FF:0000025;;FF:0000210
 |is_obsolete=
-|library_ids=CNhs12181!RDhi10009
+|library_id=CNhs12181!RDhi10009
+|library_id_phase_based=2:CNhs12181
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12199
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12199
 |name=CD19+ B Cells (pluriselect), donor090309, donation3
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12181,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |xref=
-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007945!RNA-Seq@DRS012111
-|accession_numbers=DRX008052;DRR008924;DRZ000349;DRZ001734;CAGE!DRX012343;DRR013791;DRZ002992;NA;RNA-Seq
-|library_id=CNhs12181!RDhi10009
 }}

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FF:12199-129C3: Difference between revisions

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Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0