FF:12206-129D1: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (27 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=RNA-Seq@SAMD00013694 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008070;DRR008942;DRZ000367;DRZ001752;DRZ011717;DRZ013102!RNA-Seq;DRX012351;DRR013799;DRZ003000; | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000625 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000030 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD8%252b%2520T%2520Cells%2520%2528pluriselect%2529%252c%2520donor090612%252c%2520donation2.CNhs12184.12206-129D1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12206-129D1 | |id=FF:12206-129D1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000030;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs12184!RDhi10018 | |||
|library_id_phase_based=2:CNhs12184 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12206 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12206 | |||
|name=CD8+ T Cells (pluriselect), donor090612, donation2 | |name=CD8+ T Cells (pluriselect), donor090612, donation2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12184,LSID975,release011,COMPLETED | |profile_hcage=CNhs12184,LSID975,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0461457443501051,0,0,0,0,-0.068026541386176,0.289390266016242,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,-0.153323010348428,0,0,0,0,0.168366204242204,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0997539726159077,0,0,0,0,0,0,0,0,0.145399986873046,0,0,0,0.339230015971761,0,-0.0475772086011165,0.168366204242204,-0.0969923612426051,0,0,-0.00505213851288687,0,0.0922914887002101,0,0,0,0,0,0,0,0,0.424463592660684,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0,-0.0296001901673713,-0.0576371324484503,0,0,0,-0.0687913083498685,-0.066502269687748,0,0,0,0.0922914887002101,-0.00574386253749633,-0.09233145645079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0732414140634195,0,0,0,-0.206876320411979,-0.423844366435377,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.00574386253749633,0,0.0922914887002101,0,0,0,0,0,0.0922914887002101,0,0,0,-0.247178875285564,0,-0.134856202780247,-0.0512236538232618,0,0,0.212294203775371,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,0.395682268313227,0.0922914887002101,-0.128112316799404,-0.0683442610773682,0,0,0,0,0.0941407160416644,0,0.047486720448463,-0.0827201683234173,-0.129320099402597,-0.594355877162437,0.0417373075972575,0,0,0,-0.183833160531528,-0.522696502087374,0,0,0.305561642602726,0.197937728739271,0,0,-0.391044581551635,0,-0.161106703662413,-0.164684948261151,0,-0.0788423858820452,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.134542645975661,0,0,0,0,0.373238827578277,0,0.00448090662446018,-0.280994667256357,-0.22613976860465,0.0461457443501051,-0.313736854211811,0,0.0368402889618478,-0.21879082789977,-0.0734512030929257,-0.0687913083498685,0.0209643548710651,-0.0976902308496372,-0.0835954169986036,0.099786507841687,-0.201791347488447,-0.100412630802636,0.183060017266476,-0.0696217710889019,-1.0630423040449,0.190003853737997,0,0,-0.0703725025005297,0.733776632376812,0,-0.0750241655786841,0.0667363122661465,-0.0903948827494605,-0.67098743647571,-0.369976387388722,-0.55122821730723,0.231414487908331,-0.0395325284566706,-0.168046186880353,-0.0147120338341137,-0.4215723249037,-0.113657298649394,0,-0.0440834128685945,-0.0795867172971574,-0.552831747660859,0.623163567111458,-0.00122211590167543,-0.0224462191563511,0.0239472276228419,0,-0.799345703160492,-0.0419914179651821,0,0,-0.117245988216782,0.0922914887002101,0,0.0922914887002101,0,0,0.0514894937929047,0.687470404795994,0.26282684974997,0,0.0540582916737305,-0.068628302424831,0.306850519417335,0,0.264581877790508,-0.0537184087571841,0,-0.0767736295160766,0,-0.194082632237755,-0.312727445026122,-0.164990696339003,-0.133004539375496,-0.0584468268118252,0.464879376699223,0.160439220586209,-0.0826865797049832,0.31150255184554,-0.124307696593413,-0.0881268324752877,-0.0296001901673713,0.277712518461037,0.645320509325961,-0.103704950497365,-0.305104390858112,0,0.264405274921394,0,0.118628152035737,0,0.419806504814743,-0.115970158812556,1.09708713799604,0.12816272153216,0,-0.260108396466491,-0.788130937773974,0,-0.0361325758389719,-0.00186929225354643,0.168366204242204,-0.150367083334639,-0.605404477812372,-0.0208095505063631,-0.138989456679195,0,-0.790080158389657,0,0,-0.195747267739825,-0.143184549064179,0,-0.385889334268356,-0.609202914213396,-0.604216041195295,-0.115971073434934,0,0,-0.645700337992725,0,0,-0.51363657511782,-0.0636048451378017,-0.235848900036642,0.242356069818759,-0.0437307369323933,-0.108622809454255,0,0,0.161702250006585,0.956669049085052,-0.098350726241769,0,0,-0.019115675271509,-0.116628112990133,0,0.169615007985881,0,-0.111082588436662,0,0.00310519061349934,0,0,0.0461457443501051,0,0,0.19028860497483,-0.121752970769985,0,-0.0272135105647369,0,0,0,0,0,0.0922914887002101,0,0,-0.239247275919688,-0.0338182733315783,-0.12301741567642,0,0,0,0,-0.047357198311271,-0.203236562094724,0.289390266016242,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,-0.476938048106845,0,0,0,-0.18466291290158,0,0,0,0,0.346530445028622,0,0,-0.247995749464388,0,-0.0103996839178226,0.25764813642492,0,0.329224529349096,0.190333838063145,-1.30962034064846,0,0,-0.261347131789888,0,0,-0.00624133982002206,-0.0823702229656663,0,0,0,0,0,0,0,0,0.625755889435142,0,0,0,0,0,0,0,0,0,0,0,0.0591210658501704,-0.0922240566585104,-0.0024884638840762,0,0,0,0,0,0,-0.0241060230789031,-0.171081734551479,0,0,0,0,0,0,0,0,-0.379134450963032,0,0,0.168366204242204,0,0,-0.0969923612426051,0,0,0,0.0922914887002101,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0310275973352376,-0.870853913949057,0,0,0,0,0,0.289390266016242,0,0.0145569678101514,0,0,0,0,1.30665168599108,0,0,0,-0.104796384789156,0,-0.068026541386176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.221212997670288,-0.0247755787802223,-0.017278070916509,0.058794690501863,0,0,-0.232628352633041,0,0,0,0,0,0,0.052842678092575,0,0,0,0,0,0,0,0,0.0461457443501051,0,0,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0.0574334448951217,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.0706531142728106,0,0,0,0,0,0,-0.0757450443263673,-0.283220399823148,-0.0657602982381733,0,0,0,-0.054385572482455,0.339230015971761,0,-0.0554671542607458,0.168366204242204,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0.162685924073337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0.339230015971761,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200723281844333,0,0,0,0,0,0,0.168366204242204,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0.0461457443501051,0,0,0,0,0,0,0,0,0,0.0122730204315717,0,0,0,-0.04472002541484,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0214944430284029,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.166569618593721,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.124803298528489,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,-0.271882734372849,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.290799973746092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0461457443501051,0,0,0,0,0,0,0.424463592660684,0,0,0,0,0,0,0.0387926595997869,-0.211605608631581,-0.423844366435377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167669108910112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,0,0.22590455838231,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0,0,0,0,0.0461457443501051,0,0,0,0,0,0.0164488219774293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230765621327315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0461457443501051,0,0,0,0,0,0,0,0,0,0.168366204242204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48813013243903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,0.146482828126839,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0.162685924073337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.110384362449462,0,0,0,0,0.0218619824409413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0461457443501051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0.168366204242204,0,0,0,0,0.112978546959737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0461457443501051,0,0,0.0461457443501051,0,0,0,0.209648267351264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,-0.00505213851288687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,0.0429330105932946,0,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.259115966016402,0,0,0.514563558265804,0,-0.219549009109813,0,0,0,0,0,0,-0.0013487203691155,0,0,0,0,0,0,0,0,0,0,0,0.168366204242204,0.0461457443501051,-0.0531554003027925,0,0,0,0.0922914887002101,0,0,0.0922914887002101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.187780606622756,0,-0.0391314215868488,-0.107684422505773,0,0,-0.0398064720263404,0,0,0,0,0,0.164237120881462,0.109880918863611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0408295247396738,0.0922914887002101,0,0,-0.0568589461625992,0.884629457292058,0,-0.21047005010822,0,0,-0.745001030551967,0,0,0,-0.0959594073735869 | |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=3.60342 | |rna_weight_ug=3.60342 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.37887632400788e-215!GO:0043227;membrane-bound organelle;3.22629211616115e-190!GO:0043231;intracellular membrane-bound organelle;6.9673612167117e-190!GO:0043226;organelle;6.67622536069754e-175!GO:0043229;intracellular organelle;3.02082950285838e-174!GO:0005737;cytoplasm;1.85824418565284e-132!GO:0044422;organelle part;8.94069702472271e-108!GO:0044446;intracellular organelle part;3.50991299359182e-106!GO:0005634;nucleus;2.79888238860582e-99!GO:0043170;macromolecule metabolic process;1.43068079005581e-95!GO:0044444;cytoplasmic part;2.18308479957055e-92!GO:0032991;macromolecular complex;8.19234663181606e-92!GO:0044237;cellular metabolic process;8.38403621251794e-92!GO:0044238;primary metabolic process;7.25100530184574e-89!GO:0030529;ribonucleoprotein complex;3.3975204488248e-84!GO:0003723;RNA binding;6.1325365586373e-78!GO:0044428;nuclear part;4.16061236447009e-77!GO:0043233;organelle lumen;1.67150534931696e-65!GO:0031974;membrane-enclosed lumen;1.67150534931696e-65!GO:0043283;biopolymer metabolic process;8.65173304314729e-64!GO:0010467;gene expression;6.77692426408963e-61!GO:0005515;protein binding;4.95141950973166e-56!GO:0006396;RNA processing;5.68246632530714e-54!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.51781372900499e-53!GO:0006412;translation;2.8898644851973e-52!GO:0005739;mitochondrion;3.71299291228285e-50!GO:0033036;macromolecule localization;4.37494537913945e-49!GO:0019538;protein metabolic process;1.60533400411211e-48!GO:0015031;protein transport;2.7221511076696e-47!GO:0016071;mRNA metabolic process;1.6345610512636e-46!GO:0031981;nuclear lumen;1.85979211744326e-46!GO:0044267;cellular protein metabolic process;5.98423031113901e-46!GO:0045184;establishment of protein localization;6.47345828979095e-46!GO:0005840;ribosome;1.62607870437673e-45!GO:0044260;cellular macromolecule metabolic process;2.5096604410704e-45!GO:0008104;protein localization;2.95527986217759e-45!GO:0043234;protein complex;3.11287831566081e-44!GO:0008380;RNA splicing;1.40120010372601e-40!GO:0006397;mRNA processing;8.31296312085726e-40!GO:0003676;nucleic acid binding;2.38816093143371e-39!GO:0003735;structural constituent of ribosome;3.30029054605232e-39!GO:0009059;macromolecule biosynthetic process;1.6025297972314e-38!GO:0031090;organelle membrane;5.72264166361701e-37!GO:0044429;mitochondrial part;3.17333367925011e-36!GO:0031967;organelle envelope;1.60960806353267e-35!GO:0031975;envelope;3.55941035883284e-35!GO:0033279;ribosomal subunit;3.09301437623062e-34!GO:0005829;cytosol;4.42220221970548e-34!GO:0016070;RNA metabolic process;1.4461950547547e-32!GO:0046907;intracellular transport;2.76871008540153e-32!GO:0016043;cellular component organization and biogenesis;4.69956091458492e-31!GO:0006886;intracellular protein transport;5.2886017433299e-31!GO:0005681;spliceosome;1.8262966086096e-30!GO:0005654;nucleoplasm;9.50958422593009e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.7054346929072e-29!GO:0044249;cellular biosynthetic process;5.6871789396507e-29!GO:0065003;macromolecular complex assembly;1.73532120006831e-28!GO:0009058;biosynthetic process;3.00686120733208e-28!GO:0006259;DNA metabolic process;3.51028591763313e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.42381023055806e-26!GO:0000166;nucleotide binding;1.43026850324857e-25!GO:0022607;cellular component assembly;4.68309550870646e-25!GO:0044445;cytosolic part;3.897089024063e-24!GO:0051641;cellular localization;5.84276555076424e-24!GO:0051649;establishment of cellular localization;8.3544568716291e-24!GO:0044451;nucleoplasm part;1.2012871848596e-23!GO:0005740;mitochondrial envelope;1.13571067683535e-22!GO:0019866;organelle inner membrane;3.13722078448896e-22!GO:0031966;mitochondrial membrane;7.9014962119444e-22!GO:0006996;organelle organization and biogenesis;1.58404257218118e-21!GO:0012501;programmed cell death;2.69780856885878e-21!GO:0006512;ubiquitin cycle;2.85773354915121e-21!GO:0006915;apoptosis;3.33963300028344e-21!GO:0008219;cell death;2.64369380578291e-20!GO:0016265;death;2.64369380578291e-20!GO:0005743;mitochondrial inner membrane;3.21371132336408e-20!GO:0006119;oxidative phosphorylation;3.21647941384385e-19!GO:0022618;protein-RNA complex assembly;4.00029815362934e-19!GO:0016874;ligase activity;1.59683539719659e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.29309864458392e-18!GO:0044265;cellular macromolecule catabolic process;2.37129107475385e-18!GO:0032553;ribonucleotide binding;2.46404533706943e-18!GO:0032555;purine ribonucleotide binding;2.46404533706943e-18!GO:0016462;pyrophosphatase activity;2.83642275722257e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.88608867183929e-18!GO:0043412;biopolymer modification;4.47605531899998e-18!GO:0015935;small ribosomal subunit;6.27071318273537e-18!GO:0017076;purine nucleotide binding;7.18144789653568e-18!GO:0005730;nucleolus;8.43247620869011e-18!GO:0017111;nucleoside-triphosphatase activity;8.86172435430179e-18!GO:0015934;large ribosomal subunit;3.19000979626286e-17!GO:0016604;nuclear body;3.48503226429324e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.44996228266637e-17!GO:0006605;protein targeting;5.75462892020512e-17!GO:0044455;mitochondrial membrane part;6.18788075481612e-17!GO:0019941;modification-dependent protein catabolic process;6.45540502104573e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.45540502104573e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.09557255569063e-16!GO:0044257;cellular protein catabolic process;1.39937523725882e-16!GO:0031980;mitochondrial lumen;1.68696216384768e-16!GO:0005759;mitochondrial matrix;1.68696216384768e-16!GO:0043285;biopolymer catabolic process;4.77214153467003e-16!GO:0043228;non-membrane-bound organelle;4.93763984531341e-16!GO:0043232;intracellular non-membrane-bound organelle;4.93763984531341e-16!GO:0008134;transcription factor binding;6.20273188068971e-16!GO:0006913;nucleocytoplasmic transport;9.51564642871778e-16!GO:0006464;protein modification process;1.00654237953051e-15!GO:0008135;translation factor activity, nucleic acid binding;1.64300789899722e-15!GO:0051169;nuclear transport;1.80064839298401e-15!GO:0050794;regulation of cellular process;2.4789263654515e-15!GO:0006457;protein folding;2.4789263654515e-15!GO:0005524;ATP binding;6.29037495668764e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;6.82988251849223e-15!GO:0000375;RNA splicing, via transesterification reactions;6.82988251849223e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.82988251849223e-15!GO:0000502;proteasome complex (sensu Eukaryota);7.92378048662682e-15!GO:0032559;adenyl ribonucleotide binding;1.56087537374823e-14!GO:0043687;post-translational protein modification;1.86506076593051e-14!GO:0012505;endomembrane system;2.04313348092586e-14!GO:0042981;regulation of apoptosis;3.2241706649278e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;3.50949991506217e-14!GO:0009057;macromolecule catabolic process;3.61240682683897e-14!GO:0005746;mitochondrial respiratory chain;4.20540842818978e-14!GO:0043067;regulation of programmed cell death;4.78632733261836e-14!GO:0030554;adenyl nucleotide binding;5.72620096505081e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.38040380148553e-14!GO:0006974;response to DNA damage stimulus;6.78488637726886e-14!GO:0051276;chromosome organization and biogenesis;7.2632746991342e-14!GO:0005635;nuclear envelope;1.01073540230341e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.27095079197842e-13!GO:0016607;nuclear speck;1.53061956323033e-13!GO:0006323;DNA packaging;1.61188096442963e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.61987469350175e-13!GO:0050136;NADH dehydrogenase (quinone) activity;7.48896193711227e-13!GO:0003954;NADH dehydrogenase activity;7.48896193711227e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.48896193711227e-13!GO:0031965;nuclear membrane;1.23500908083382e-12!GO:0016887;ATPase activity;1.82176618796181e-12!GO:0042623;ATPase activity, coupled;2.08597469465031e-12!GO:0048770;pigment granule;2.26221371652129e-12!GO:0042470;melanosome;2.26221371652129e-12!GO:0044248;cellular catabolic process;2.69494948039301e-12!GO:0006281;DNA repair;4.60816985400188e-12!GO:0030163;protein catabolic process;5.05445052393002e-12!GO:0005761;mitochondrial ribosome;7.53476097260979e-12!GO:0000313;organellar ribosome;7.53476097260979e-12!GO:0019222;regulation of metabolic process;8.09510925591478e-12!GO:0003743;translation initiation factor activity;9.19871296149492e-12!GO:0006413;translational initiation;1.28307466412941e-11!GO:0017038;protein import;1.87592673673243e-11!GO:0005794;Golgi apparatus;2.09330333389757e-11!GO:0048193;Golgi vesicle transport;2.12719471385167e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.13641232469621e-11!GO:0042773;ATP synthesis coupled electron transport;2.13641232469621e-11!GO:0042254;ribosome biogenesis and assembly;2.42688173655579e-11!GO:0004386;helicase activity;3.00513910835455e-11!GO:0016192;vesicle-mediated transport;3.42099694625037e-11!GO:0030964;NADH dehydrogenase complex (quinone);4.34978704000091e-11!GO:0045271;respiratory chain complex I;4.34978704000091e-11!GO:0005747;mitochondrial respiratory chain complex I;4.34978704000091e-11!GO:0007049;cell cycle;4.89959236889003e-11!GO:0008639;small protein conjugating enzyme activity;5.88766407038793e-11!GO:0016568;chromatin modification;8.05092178860756e-11!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.49839751904323e-11!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.16705277107665e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.16747260659142e-10!GO:0006446;regulation of translational initiation;1.21500036785918e-10!GO:0004842;ubiquitin-protein ligase activity;1.24132681446718e-10!GO:0044453;nuclear membrane part;1.84089289247767e-10!GO:0051082;unfolded protein binding;3.00421275337384e-10!GO:0050789;regulation of biological process;3.04748972389293e-10!GO:0005694;chromosome;3.29145092699874e-10!GO:0008026;ATP-dependent helicase activity;4.55670466766459e-10!GO:0019787;small conjugating protein ligase activity;5.32089039802347e-10!GO:0031323;regulation of cellular metabolic process;6.51018608930406e-10!GO:0051186;cofactor metabolic process;7.90842142529548e-10!GO:0003712;transcription cofactor activity;8.20632687655195e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.01151964700621e-09!GO:0007243;protein kinase cascade;1.51140233227638e-09!GO:0050657;nucleic acid transport;2.11314629869447e-09!GO:0051236;establishment of RNA localization;2.11314629869447e-09!GO:0050658;RNA transport;2.11314629869447e-09!GO:0006333;chromatin assembly or disassembly;2.28570971448685e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.5100715433237e-09!GO:0019829;cation-transporting ATPase activity;2.71057354638824e-09!GO:0006403;RNA localization;2.74173053432703e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.04336679977232e-09!GO:0005643;nuclear pore;4.29207872262819e-09!GO:0044427;chromosomal part;5.76650936307262e-09!GO:0006793;phosphorus metabolic process;6.21973246037179e-09!GO:0006796;phosphate metabolic process;6.21973246037179e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.39094381607493e-09!GO:0043566;structure-specific DNA binding;6.65469046235844e-09!GO:0008565;protein transporter activity;7.98595790400474e-09!GO:0006350;transcription;1.00145722599455e-08!GO:0005768;endosome;1.44229378858653e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.51830792612612e-08!GO:0051170;nuclear import;1.72291657763179e-08!GO:0065004;protein-DNA complex assembly;1.72354294067243e-08!GO:0051246;regulation of protein metabolic process;1.83079636187634e-08!GO:0010468;regulation of gene expression;1.96839706483034e-08!GO:0009719;response to endogenous stimulus;2.30515510907833e-08!GO:0006399;tRNA metabolic process;2.31122109280347e-08!GO:0009259;ribonucleotide metabolic process;2.44947032340708e-08!GO:0006606;protein import into nucleus;2.78095762633551e-08!GO:0008270;zinc ion binding;2.80715116272398e-08!GO:0016072;rRNA metabolic process;3.28242931420758e-08!GO:0016310;phosphorylation;3.44364867189977e-08!GO:0005839;proteasome core complex (sensu Eukaryota);3.62174623066976e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.35148236079205e-08!GO:0006364;rRNA processing;4.48653529830332e-08!GO:0048523;negative regulation of cellular process;4.51110188691779e-08!GO:0016881;acid-amino acid ligase activity;5.07580880157841e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.51047485679923e-08!GO:0051028;mRNA transport;6.48550202072904e-08!GO:0006164;purine nucleotide biosynthetic process;7.01121087664558e-08!GO:0009260;ribonucleotide biosynthetic process;7.0115097627471e-08!GO:0016787;hydrolase activity;7.20967175861771e-08!GO:0006163;purine nucleotide metabolic process;7.98446021595748e-08!GO:0006732;coenzyme metabolic process;8.13911109554741e-08!GO:0051726;regulation of cell cycle;9.23617317323035e-08!GO:0065002;intracellular protein transport across a membrane;9.23617317323035e-08!GO:0022402;cell cycle process;9.48392078053254e-08!GO:0000785;chromatin;1.04316841253117e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.07741384630767e-07!GO:0000074;regulation of progression through cell cycle;1.15706396493986e-07!GO:0003697;single-stranded DNA binding;1.2442016998372e-07!GO:0009150;purine ribonucleotide metabolic process;1.3159426200009e-07!GO:0004298;threonine endopeptidase activity;1.78914242792491e-07!GO:0009615;response to virus;1.90150472549033e-07!GO:0003713;transcription coactivator activity;2.12632437070658e-07!GO:0006916;anti-apoptosis;2.21031200975132e-07!GO:0000245;spliceosome assembly;2.23235102778483e-07!GO:0009060;aerobic respiration;2.24057176753837e-07!GO:0032446;protein modification by small protein conjugation;2.34742940493776e-07!GO:0015986;ATP synthesis coupled proton transport;2.46251516779211e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.46251516779211e-07!GO:0046930;pore complex;2.99589757557869e-07!GO:0043069;negative regulation of programmed cell death;3.00424941471374e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.0553814162135e-07!GO:0006366;transcription from RNA polymerase II promoter;3.19075308052017e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.31891812746254e-07!GO:0043066;negative regulation of apoptosis;5.27482092064045e-07!GO:0016567;protein ubiquitination;5.7666349619052e-07!GO:0006917;induction of apoptosis;6.01383578876752e-07!GO:0044432;endoplasmic reticulum part;6.17747575053859e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.484949655268e-07!GO:0065009;regulation of a molecular function;6.52905559114532e-07!GO:0043065;positive regulation of apoptosis;8.83129591907863e-07!GO:0000151;ubiquitin ligase complex;8.98085725408909e-07!GO:0012502;induction of programmed cell death;9.88984958900377e-07!GO:0005783;endoplasmic reticulum;1.01884946816147e-06!GO:0016779;nucleotidyltransferase activity;1.10221296392715e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.24245465543441e-06!GO:0043068;positive regulation of programmed cell death;1.45377764741912e-06!GO:0016563;transcription activator activity;1.60730234082441e-06!GO:0007242;intracellular signaling cascade;1.61601689025447e-06!GO:0065007;biological regulation;1.6550104826918e-06!GO:0006461;protein complex assembly;1.69357936038134e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.74233296676809e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.83524957290324e-06!GO:0009055;electron carrier activity;1.8621108945259e-06!GO:0048519;negative regulation of biological process;1.8621108945259e-06!GO:0006754;ATP biosynthetic process;2.02631271063111e-06!GO:0006753;nucleoside phosphate metabolic process;2.02631271063111e-06!GO:0045333;cellular respiration;2.16865000401064e-06!GO:0009056;catabolic process;2.19838313525105e-06!GO:0006417;regulation of translation;2.42188460167545e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.58487520334451e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.58487520334451e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.58487520334451e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.66084553151766e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.66084553151766e-06!GO:0003724;RNA helicase activity;2.76370907552768e-06!GO:0032774;RNA biosynthetic process;2.81548709335532e-06!GO:0005773;vacuole;3.00241155351637e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.06906110301436e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.06906110301436e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.09056723352822e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.1240551297286e-06!GO:0006401;RNA catabolic process;3.12915756715318e-06!GO:0031324;negative regulation of cellular metabolic process;3.3752568891768e-06!GO:0051168;nuclear export;3.37817435864208e-06!GO:0006351;transcription, DNA-dependent;3.49470156627691e-06!GO:0046034;ATP metabolic process;3.58245412886476e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.58578175202305e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.58578175202305e-06!GO:0045449;regulation of transcription;3.92260930868295e-06!GO:0005525;GTP binding;3.93909861129728e-06!GO:0009141;nucleoside triphosphate metabolic process;4.03240235883493e-06!GO:0043038;amino acid activation;4.31507977049315e-06!GO:0006418;tRNA aminoacylation for protein translation;4.31507977049315e-06!GO:0043039;tRNA aminoacylation;4.31507977049315e-06!GO:0005793;ER-Golgi intermediate compartment;4.84516186105983e-06!GO:0045259;proton-transporting ATP synthase complex;5.42551397586562e-06!GO:0030120;vesicle coat;6.10162916383846e-06!GO:0030662;coated vesicle membrane;6.10162916383846e-06!GO:0005770;late endosome;6.19312372234341e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.37539073747454e-06!GO:0046914;transition metal ion binding;6.4656146772516e-06!GO:0000323;lytic vacuole;6.64397051101657e-06!GO:0005764;lysosome;6.64397051101657e-06!GO:0016564;transcription repressor activity;7.50787395516807e-06!GO:0019899;enzyme binding;8.25160673384344e-06!GO:0048475;coated membrane;8.46968559664163e-06!GO:0030117;membrane coat;8.46968559664163e-06!GO:0006613;cotranslational protein targeting to membrane;8.58542742672208e-06!GO:0006260;DNA replication;8.59244124686106e-06!GO:0016740;transferase activity;8.60758774430169e-06!GO:0006099;tricarboxylic acid cycle;8.67465523508163e-06!GO:0046356;acetyl-CoA catabolic process;8.67465523508163e-06!GO:0005789;endoplasmic reticulum membrane;9.48508882453136e-06!GO:0031497;chromatin assembly;1.22316091130994e-05!GO:0045786;negative regulation of progression through cell cycle;1.29731111446451e-05!GO:0006334;nucleosome assembly;1.3004307790382e-05!GO:0001772;immunological synapse;1.33152518558964e-05!GO:0051188;cofactor biosynthetic process;1.33478905545079e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.51604683558707e-05!GO:0031326;regulation of cellular biosynthetic process;1.6749791365562e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.80993769161681e-05!GO:0044431;Golgi apparatus part;2.05509607685184e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.12608816292083e-05!GO:0009967;positive regulation of signal transduction;2.56034671506697e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.59569392985313e-05!GO:0015399;primary active transmembrane transporter activity;2.59569392985313e-05!GO:0009892;negative regulation of metabolic process;2.6357506229742e-05!GO:0006084;acetyl-CoA metabolic process;2.64809592877939e-05!GO:0016481;negative regulation of transcription;3.02083529786309e-05!GO:0042110;T cell activation;3.37501971412317e-05!GO:0003924;GTPase activity;4.53985836588571e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.54978385384971e-05!GO:0006402;mRNA catabolic process;4.61138063169702e-05!GO:0008632;apoptotic program;4.73197359319051e-05!GO:0042101;T cell receptor complex;6.11519784089128e-05!GO:0032561;guanyl ribonucleotide binding;6.35869897752264e-05!GO:0019001;guanyl nucleotide binding;6.35869897752264e-05!GO:0006612;protein targeting to membrane;6.36286605397694e-05!GO:0044440;endosomal part;7.15338467083548e-05!GO:0010008;endosome membrane;7.15338467083548e-05!GO:0008186;RNA-dependent ATPase activity;7.58289247877127e-05!GO:0009108;coenzyme biosynthetic process;7.59802157693795e-05!GO:0016363;nuclear matrix;7.76178844813237e-05!GO:0051187;cofactor catabolic process;7.99919184205575e-05!GO:0008234;cysteine-type peptidase activity;8.01396636761878e-05!GO:0046649;lymphocyte activation;8.12997607808608e-05!GO:0006355;regulation of transcription, DNA-dependent;8.12997607808608e-05!GO:0002376;immune system process;8.2991110386263e-05!GO:0009109;coenzyme catabolic process;8.2991110386263e-05!GO:0048522;positive regulation of cellular process;9.15743138109214e-05!GO:0060090;molecular adaptor activity;9.16499498034201e-05!GO:0003690;double-stranded DNA binding;9.43708821773039e-05!GO:0007005;mitochondrion organization and biogenesis;9.75570918666035e-05!GO:0009889;regulation of biosynthetic process;0.000105458285435002!GO:0043623;cellular protein complex assembly;0.000114922291886819!GO:0007264;small GTPase mediated signal transduction;0.000127645631279105!GO:0000278;mitotic cell cycle;0.000130043683804139!GO:0005813;centrosome;0.000156865307313532!GO:0004674;protein serine/threonine kinase activity;0.000176614406920489!GO:0005885;Arp2/3 protein complex;0.000186243064409543!GO:0003677;DNA binding;0.000193146499933897!GO:0003729;mRNA binding;0.000203864502548835!GO:0045321;leukocyte activation;0.00022353522773493!GO:0004004;ATP-dependent RNA helicase activity;0.000239987691279449!GO:0006752;group transfer coenzyme metabolic process;0.000252527858575485!GO:0005762;mitochondrial large ribosomal subunit;0.000258617873834059!GO:0000315;organellar large ribosomal subunit;0.000258617873834059!GO:0043492;ATPase activity, coupled to movement of substances;0.000275787829449362!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000304492906751537!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00032705556498067!GO:0000139;Golgi membrane;0.000337649278654924!GO:0008047;enzyme activator activity;0.000366516048670907!GO:0006891;intra-Golgi vesicle-mediated transport;0.00036820231540331!GO:0009117;nucleotide metabolic process;0.000421423449201034!GO:0003899;DNA-directed RNA polymerase activity;0.000426959617545918!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000428725807738013!GO:0051427;hormone receptor binding;0.000451444237556025!GO:0005798;Golgi-associated vesicle;0.000462768163410574!GO:0043021;ribonucleoprotein binding;0.000476306913483648!GO:0006310;DNA recombination;0.000478090673630247!GO:0008654;phospholipid biosynthetic process;0.000486498034790658!GO:0005774;vacuolar membrane;0.00051114841829942!GO:0005815;microtubule organizing center;0.000541703968961568!GO:0050790;regulation of catalytic activity;0.000559436680787008!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000639586254788109!GO:0030384;phosphoinositide metabolic process;0.000653375024720769!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000653638023982479!GO:0007265;Ras protein signal transduction;0.00066543390340532!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000692701646693339!GO:0031902;late endosome membrane;0.000799045134201858!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.000868655083811068!GO:0035257;nuclear hormone receptor binding;0.000875104889438559!GO:0016251;general RNA polymerase II transcription factor activity;0.000910829958375852!GO:0048518;positive regulation of biological process;0.000979461796347339!GO:0005765;lysosomal membrane;0.00102117574061171!GO:0043681;protein import into mitochondrion;0.00104712269094819!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00107441232684947!GO:0031252;leading edge;0.0010827921057965!GO:0015992;proton transport;0.00113854228790419!GO:0006818;hydrogen transport;0.00119788273763775!GO:0030695;GTPase regulator activity;0.00120292409573655!GO:0000314;organellar small ribosomal subunit;0.00124424092487284!GO:0005763;mitochondrial small ribosomal subunit;0.00124424092487284!GO:0004518;nuclease activity;0.0012500458158519!GO:0016197;endosome transport;0.00125435231295593!GO:0031072;heat shock protein binding;0.00137411024279804!GO:0005667;transcription factor complex;0.00139722838679228!GO:0005070;SH3/SH2 adaptor activity;0.00140094977506021!GO:0044437;vacuolar part;0.00144477608362285!GO:0005769;early endosome;0.00149228397506738!GO:0006611;protein export from nucleus;0.00150455587757357!GO:0006352;transcription initiation;0.00161522238293939!GO:0032940;secretion by cell;0.00185251726488136!GO:0048500;signal recognition particle;0.00189813404654058!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00192238925794117!GO:0003714;transcription corepressor activity;0.00192497641143937!GO:0008033;tRNA processing;0.00193738232219792!GO:0006383;transcription from RNA polymerase III promoter;0.00195327480802905!GO:0003725;double-stranded RNA binding;0.00198947905182179!GO:0009966;regulation of signal transduction;0.00202346976638693!GO:0007034;vacuolar transport;0.00202881687314129!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00206012050631259!GO:0051252;regulation of RNA metabolic process;0.0021659981009458!GO:0022415;viral reproductive process;0.00220546656714177!GO:0046489;phosphoinositide biosynthetic process;0.00241867516431611!GO:0045892;negative regulation of transcription, DNA-dependent;0.00252899665502423!GO:0051087;chaperone binding;0.00254911561406475!GO:0016859;cis-trans isomerase activity;0.00257924241730832!GO:0006650;glycerophospholipid metabolic process;0.00259912271612724!GO:0047485;protein N-terminus binding;0.00260971371321854!GO:0002757;immune response-activating signal transduction;0.0026253719915646!GO:0006261;DNA-dependent DNA replication;0.00268448579157414!GO:0051251;positive regulation of lymphocyte activation;0.00269785877288749!GO:0051090;regulation of transcription factor activity;0.00270420688572039!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00279235363529228!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00279235363529228!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00279235363529228!GO:0043488;regulation of mRNA stability;0.00297375747465265!GO:0043487;regulation of RNA stability;0.00297375747465265!GO:0000786;nucleosome;0.00297929114534883!GO:0019867;outer membrane;0.00300191151523327!GO:0006955;immune response;0.00301246211899573!GO:0005741;mitochondrial outer membrane;0.00301246211899573!GO:0003746;translation elongation factor activity;0.00319226253532294!GO:0051336;regulation of hydrolase activity;0.00321356520835918!GO:0000087;M phase of mitotic cell cycle;0.00324061985717185!GO:0030658;transport vesicle membrane;0.003551978454162!GO:0031968;organelle outer membrane;0.0035584437878732!GO:0006414;translational elongation;0.0035584437878732!GO:0032259;methylation;0.00357642380521027!GO:0044452;nucleolar part;0.00363126784088815!GO:0005083;small GTPase regulator activity;0.00368215953829113!GO:0022890;inorganic cation transmembrane transporter activity;0.003693913991048!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00382814095735328!GO:0006405;RNA export from nucleus;0.0039166539830913!GO:0045045;secretory pathway;0.00397897881552349!GO:0005684;U2-dependent spliceosome;0.00398146515822032!GO:0006338;chromatin remodeling;0.00410181426935774!GO:0051092;activation of NF-kappaB transcription factor;0.0041383649820194!GO:0004527;exonuclease activity;0.00416377253076281!GO:0006607;NLS-bearing substrate import into nucleus;0.00418065859256409!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00418137734845809!GO:0045047;protein targeting to ER;0.00418137734845809!GO:0003711;transcription elongation regulator activity;0.0041902812334411!GO:0031982;vesicle;0.00462202193865975!GO:0008312;7S RNA binding;0.00475288348064767!GO:0043414;biopolymer methylation;0.00493087278836096!GO:0003678;DNA helicase activity;0.00493972281568464!GO:0005637;nuclear inner membrane;0.00496000094785497!GO:0030118;clathrin coat;0.00496000094785497!GO:0007067;mitosis;0.00497355907510107!GO:0002764;immune response-regulating signal transduction;0.00536308484187114!GO:0008624;induction of apoptosis by extracellular signals;0.00549272578145229!GO:0016584;nucleosome positioning;0.00555264894399152!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00558556856368577!GO:0006950;response to stress;0.00558821108030226!GO:0015631;tubulin binding;0.00570477657530791!GO:0019783;small conjugating protein-specific protease activity;0.00577148950356308!GO:0001775;cell activation;0.00589941088635907!GO:0005096;GTPase activator activity;0.00593738745033!GO:0048471;perinuclear region of cytoplasm;0.00599183231331395!GO:0004843;ubiquitin-specific protease activity;0.00602875032916607!GO:0051301;cell division;0.00621546131511758!GO:0046474;glycerophospholipid biosynthetic process;0.00621986908405558!GO:0046966;thyroid hormone receptor binding;0.00623930673824653!GO:0051539;4 iron, 4 sulfur cluster binding;0.00633804158342624!GO:0042287;MHC protein binding;0.00657507713179679!GO:0000049;tRNA binding;0.00663556048265951!GO:0016605;PML body;0.00664954994393249!GO:0006289;nucleotide-excision repair;0.00695055472886466!GO:0046822;regulation of nucleocytoplasmic transport;0.00727248050241277!GO:0042802;identical protein binding;0.00768589552599317!GO:0051098;regulation of binding;0.00782109942963832!GO:0007006;mitochondrial membrane organization and biogenesis;0.00791638563602618!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0079186292095432!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0079186292095432!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00802349002373324!GO:0008168;methyltransferase activity;0.00819036030254961!GO:0007050;cell cycle arrest;0.00829470967914148!GO:0031988;membrane-bound vesicle;0.00831878908195179!GO:0032200;telomere organization and biogenesis;0.00838695491173089!GO:0000723;telomere maintenance;0.00838695491173089!GO:0051249;regulation of lymphocyte activation;0.00851685435349784!GO:0006376;mRNA splice site selection;0.0086517665646851!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0086517665646851!GO:0005669;transcription factor TFIID complex;0.00871230040354042!GO:0050865;regulation of cell activation;0.00889838594402922!GO:0030660;Golgi-associated vesicle membrane;0.00889838594402922!GO:0000209;protein polyubiquitination;0.0089260457742749!GO:0022403;cell cycle phase;0.00904653430772251!GO:0001819;positive regulation of cytokine production;0.00926465236529277!GO:0050863;regulation of T cell activation;0.00926970769276651!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00928610212007747!GO:0033116;ER-Golgi intermediate compartment membrane;0.00979766769468419!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0100046053933992!GO:0016853;isomerase activity;0.0101608499378864!GO:0043087;regulation of GTPase activity;0.0102903391585987!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0103096589149814!GO:0051920;peroxiredoxin activity;0.0103096589149814!GO:0016741;transferase activity, transferring one-carbon groups;0.0109064723492862!GO:0004532;exoribonuclease activity;0.0113312331753847!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0113312331753847!GO:0051789;response to protein stimulus;0.0113556703759919!GO:0006986;response to unfolded protein;0.0113556703759919!GO:0004221;ubiquitin thiolesterase activity;0.0116052081185691!GO:0031625;ubiquitin protein ligase binding;0.011765685287901!GO:0048468;cell development;0.0117824692225365!GO:0004197;cysteine-type endopeptidase activity;0.0119003807310534!GO:0031410;cytoplasmic vesicle;0.0120448074095768!GO:0030518;steroid hormone receptor signaling pathway;0.0121581518624397!GO:0030663;COPI coated vesicle membrane;0.0121703897334901!GO:0030126;COPI vesicle coat;0.0121703897334901!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0121703897334901!GO:0015002;heme-copper terminal oxidase activity;0.0121703897334901!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0121703897334901!GO:0004129;cytochrome-c oxidase activity;0.0121703897334901!GO:0022411;cellular component disassembly;0.0126977578261569!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0129687010865418!GO:0051540;metal cluster binding;0.0134397276253377!GO:0051536;iron-sulfur cluster binding;0.0134397276253377!GO:0008097;5S rRNA binding;0.0136516094540548!GO:0048487;beta-tubulin binding;0.013682666246224!GO:0008017;microtubule binding;0.0138535264260281!GO:0040029;regulation of gene expression, epigenetic;0.0140405808724527!GO:0008408;3'-5' exonuclease activity;0.0141642423272848!GO:0009165;nucleotide biosynthetic process;0.0141936709699002!GO:0006626;protein targeting to mitochondrion;0.0144053063463589!GO:0030137;COPI-coated vesicle;0.0149798313229185!GO:0018193;peptidyl-amino acid modification;0.0149933902715986!GO:0007041;lysosomal transport;0.0155985357881918!GO:0015630;microtubule cytoskeleton;0.0156417013441057!GO:0050870;positive regulation of T cell activation;0.0156591225126104!GO:0006497;protein amino acid lipidation;0.0157179868711157!GO:0045454;cell redox homeostasis;0.0157866036663792!GO:0005869;dynactin complex;0.0160880560463217!GO:0016023;cytoplasmic membrane-bound vesicle;0.0169242250531221!GO:0016301;kinase activity;0.0169936710358198!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0171228699369735!GO:0009112;nucleobase metabolic process;0.0171988383550662!GO:0000059;protein import into nucleus, docking;0.0178712658581579!GO:0015980;energy derivation by oxidation of organic compounds;0.018425929304445!GO:0016585;chromatin remodeling complex;0.0185426978465628!GO:0003682;chromatin binding;0.0186389227038641!GO:0016272;prefoldin complex;0.0187034999360769!GO:0000781;chromosome, telomeric region;0.0187802048305268!GO:0019079;viral genome replication;0.019496441309802!GO:0005657;replication fork;0.0195881264593992!GO:0005048;signal sequence binding;0.0202881432583853!GO:0009116;nucleoside metabolic process;0.0204162683519522!GO:0015923;mannosidase activity;0.0204872485239929!GO:0006839;mitochondrial transport;0.0207042190357416!GO:0050811;GABA receptor binding;0.0216980006407093!GO:0022406;membrane docking;0.0219026418302044!GO:0048278;vesicle docking;0.0219026418302044!GO:0030880;RNA polymerase complex;0.0219026418302044!GO:0006302;double-strand break repair;0.0219026418302044!GO:0050852;T cell receptor signaling pathway;0.0219175905783168!GO:0030521;androgen receptor signaling pathway;0.0220046701496709!GO:0030125;clathrin vesicle coat;0.0220103921089817!GO:0030665;clathrin coated vesicle membrane;0.0220103921089817!GO:0048002;antigen processing and presentation of peptide antigen;0.022333370721405!GO:0000118;histone deacetylase complex;0.0223477345449116!GO:0005521;lamin binding;0.0228934436610815!GO:0006506;GPI anchor biosynthetic process;0.0235808828815346!GO:0046467;membrane lipid biosynthetic process;0.0237133245954523!GO:0045058;T cell selection;0.0238244516928417!GO:0019058;viral infectious cycle;0.0242779769879449!GO:0001784;phosphotyrosine binding;0.024432228809553!GO:0019843;rRNA binding;0.0244880581589258!GO:0051223;regulation of protein transport;0.0246489278776109!GO:0016044;membrane organization and biogenesis;0.0246778870003375!GO:0050851;antigen receptor-mediated signaling pathway;0.0246957623056893!GO:0031124;mRNA 3'-end processing;0.0253001225649629!GO:0044438;microbody part;0.025440896050199!GO:0044439;peroxisomal part;0.025440896050199!GO:0016505;apoptotic protease activator activity;0.0256460756425707!GO:0006904;vesicle docking during exocytosis;0.0257643862459121!GO:0042393;histone binding;0.0259993270577479!GO:0003684;damaged DNA binding;0.0262979470647215!GO:0009607;response to biotic stimulus;0.0263898329106982!GO:0030867;rough endoplasmic reticulum membrane;0.026394712380018!GO:0043022;ribosome binding;0.0270178994850079!GO:0030119;AP-type membrane coat adaptor complex;0.0270178994850079!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0270235907179438!GO:0043621;protein self-association;0.0270235907179438!GO:0001726;ruffle;0.0272868631879414!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0273004414489967!GO:0051091;positive regulation of transcription factor activity;0.0282255293258102!GO:0008180;signalosome;0.028348806538106!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0285313981606589!GO:0006505;GPI anchor metabolic process;0.0288174614560026!GO:0030258;lipid modification;0.0288174614560026!GO:0000738;DNA catabolic process, exonucleolytic;0.0294896858902452!GO:0045309;protein phosphorylated amino acid binding;0.0296961857590256!GO:0000178;exosome (RNase complex);0.0297359812214722!GO:0030132;clathrin coat of coated pit;0.0298954839644815!GO:0019904;protein domain specific binding;0.0300141554680106!GO:0006919;caspase activation;0.0300176505604567!GO:0008139;nuclear localization sequence binding;0.0302631972884653!GO:0019883;antigen processing and presentation of endogenous antigen;0.0304508982789602!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0307192068612558!GO:0004003;ATP-dependent DNA helicase activity;0.0312833632589166!GO:0046979;TAP2 binding;0.031726499925374!GO:0046977;TAP binding;0.031726499925374!GO:0046978;TAP1 binding;0.031726499925374!GO:0042608;T cell receptor binding;0.0320980268038362!GO:0004722;protein serine/threonine phosphatase activity;0.0321018538849099!GO:0016790;thiolester hydrolase activity;0.0323016312967541!GO:0000287;magnesium ion binding;0.0323016312967541!GO:0007004;telomere maintenance via telomerase;0.0323016312967541!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0323016312967541!GO:0031123;RNA 3'-end processing;0.0324619402087836!GO:0000119;mediator complex;0.0328331922880696!GO:0051219;phosphoprotein binding;0.0330530021717151!GO:0005832;chaperonin-containing T-complex;0.0330530021717151!GO:0043281;regulation of caspase activity;0.0330601784048327!GO:0030131;clathrin adaptor complex;0.0334125625155945!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0337983525426633!GO:0000303;response to superoxide;0.0340859315046874!GO:0004540;ribonuclease activity;0.0345922250829031!GO:0004576;oligosaccharyl transferase activity;0.0346271867976662!GO:0030522;intracellular receptor-mediated signaling pathway;0.0367221308889824!GO:0032318;regulation of Ras GTPase activity;0.0374267850537073!GO:0031903;microbody membrane;0.0377633961773999!GO:0005778;peroxisomal membrane;0.0377633961773999!GO:0008250;oligosaccharyl transferase complex;0.0378264427947981!GO:0005095;GTPase inhibitor activity;0.0387129663078937!GO:0000090;mitotic anaphase;0.0389430065177035!GO:0051322;anaphase;0.0389430065177035!GO:0050857;positive regulation of antigen receptor-mediated signaling pathway;0.0390474794297941!GO:0008287;protein serine/threonine phosphatase complex;0.0390973549848917!GO:0017134;fibroblast growth factor binding;0.0391663987578611!GO:0005057;receptor signaling protein activity;0.0394183915976901!GO:0007259;JAK-STAT cascade;0.0394183915976901!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0398195542771514!GO:0000428;DNA-directed RNA polymerase complex;0.0398195542771514!GO:0000776;kinetochore;0.0401444921860147!GO:0002378;immunoglobulin biosynthetic process;0.0401444921860147!GO:0001911;negative regulation of leukocyte mediated cytotoxicity;0.0401444921860147!GO:0001915;negative regulation of T cell mediated cytotoxicity;0.0401444921860147!GO:0030176;integral to endoplasmic reticulum membrane;0.040980276776187!GO:0006595;polyamine metabolic process;0.0413092316022183!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0413092316022183!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0413092316022183!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0427274240662863!GO:0032984;macromolecular complex disassembly;0.0430802048397703!GO:0006213;pyrimidine nucleoside metabolic process;0.0430802048397703!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0432790074608721!GO:0042158;lipoprotein biosynthetic process;0.043355275858445!GO:0006284;base-excision repair;0.0444603466262868!GO:0030127;COPII vesicle coat;0.0453614946839853!GO:0012507;ER to Golgi transport vesicle membrane;0.0453614946839853!GO:0005784;translocon complex;0.0457743702447498!GO:0016788;hydrolase activity, acting on ester bonds;0.0461669862120938!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0466442690473757!GO:0006378;mRNA polyadenylation;0.047283496257466!GO:0002440;production of molecular mediator of immune response;0.0474586855739!GO:0008094;DNA-dependent ATPase activity;0.0477602396555263!GO:0006406;mRNA export from nucleus;0.0479209015898069!GO:0030134;ER to Golgi transport vesicle;0.0489655114237172!GO:0008637;apoptotic mitochondrial changes;0.048966789257719!GO:0032981;mitochondrial respiratory chain complex I assembly;0.048966789257719!GO:0010257;NADH dehydrogenase complex assembly;0.048966789257719!GO:0033108;mitochondrial respiratory chain complex assembly;0.048966789257719!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0489968673860077!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0489968673860077!GO:0008538;proteasome activator activity;0.049130356315596 | |||
|sample_id=12206 | |sample_id=12206 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=ELF1,2,4:2.55826061884;RUNX1..3:2.26464567158;ETS1,2:2.10270691616;CDX1,2,4:1.94502362637;T:1.90361827871;PAX3,7:1.87816910354;PDX1:1.87761538408;STAT1,3:1.77530684783;SPI1:1.75157093405;FOX{D1,D2}:1.56795480577;DMAP1_NCOR{1,2}_SMARC:1.51983332109;CRX:1.4899823675;IRF1,2:1.47702201281;RORA:1.43350591514;FOXO1,3,4:1.40476907334;SPIB:1.36263784748;TLX2:1.347131566;FOX{F1,F2,J1}:1.22241804004;ELK1,4_GABP{A,B1}:1.16182108422;BPTF:1.08089551585;IKZF2:1.06091179035;NANOG{mouse}:1.03950238621;HMX1:1.03716589971;IRF7:0.985349758836;TGIF1:0.932837210364;GATA6:0.861120791253;YY1:0.857341078999;NKX2-2,8:0.85678978669;FOXA2:0.822690642711;LEF1_TCF7_TCF7L1,2:0.791991946722;PBX1:0.77387482341;MYOD1:0.715271501233;NKX6-1,2:0.677743818845;BREu{core}:0.604765434258;FOX{I1,J2}:0.602479864412;PAX6:0.587289308784;EP300:0.561830375372;CREB1:0.508823303222;ZBTB16:0.461556521934;ZEB1:0.377064338737;CUX2:0.376603344572;FOXP3:0.376459485703;SPZ1:0.373393468602;RFX2..5_RFXANK_RFXAP:0.340536906643;PAX4:0.331260567313;ATF5_CREB3:0.32415977578;FOXN1:0.321163913731;SOX5:0.319900257813;SNAI1..3:0.287912415017;ALX1:0.279858090325;FOXD3:0.271951029831;POU1F1:0.263261029273;NFIX:0.260229832728;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.227766779336;FOXP1:0.216209634371;NRF1:0.215763896448;NFATC1..3:0.197535882804;PAX2:0.1934579055;SREBF1,2:0.179934816343;NKX2-1,4:0.163772752377;NFKB1_REL_RELA:0.161321294342;STAT5{A,B}:0.145491712212;RBPJ:0.142048121505;STAT2,4,6:0.0889218372336;POU2F1..3:0.0741276468769;NFIL3:0.0700990975287;ZNF143:0.0620802553001;NR1H4:0.0538828094238;ZNF148:0.0511615013658;SOX2:0.048504584935;ATF2:0.048091175455;LMO2:0.0235378398979;TAL1_TCF{3,4,12}:-0.0134149591876;HOX{A6,A7,B6,B7}:-0.0144979086812;AR:-0.026899952346;VSX1,2:-0.0279952907792;MYB:-0.0447288502894;HES1:-0.0591304348062;OCT4_SOX2{dimer}:-0.068625542096;PRRX1,2:-0.0752701071837;ADNP_IRX_SIX_ZHX:-0.0775372672133;CEBPA,B_DDIT3:-0.080387334501;NKX3-1:-0.0978398526816;TBX4,5:-0.115044341239;POU5F1:-0.141184718535;NR5A1,2:-0.144873686284;TFAP4:-0.175521893935;RXRA_VDR{dimer}:-0.185563724498;HLF:-0.205756859576;FOXQ1:-0.216086434907;FOXM1:-0.225617366133;MYFfamily:-0.256284314674;DBP:-0.267424589696;GCM1,2:-0.279128713338;NANOG:-0.288376783142;NFY{A,B,C}:-0.291560399361;HMGA1,2:-0.293912807178;JUN:-0.299779315437;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.300317199331;ESR1:-0.303519136229;AHR_ARNT_ARNT2:-0.314017972137;TFCP2:-0.314558993295;HAND1,2:-0.329702657799;NFE2L1:-0.329891097296;RREB1:-0.331445697444;ARID5B:-0.333604145007;HNF4A_NR2F1,2:-0.341602943696;GLI1..3:-0.342742780006;HNF1A:-0.357465197427;HBP1_HMGB_SSRP1_UBTF:-0.360951276991;E2F1..5:-0.369602893528;NFE2L2:-0.370771901515;FOSL2:-0.374883096795;ZNF423:-0.378302931628;MTF1:-0.378560959914;AIRE:-0.384093889024;MZF1:-0.411017838872;MAFB:-0.4131555707;ALX4:-0.454792677045;NR3C1:-0.456391056151;ATF4:-0.483115398937;BACH2:-0.49325533529;EVI1:-0.555404804965;RFX1:-0.56247810974;NHLH1,2:-0.568703852065;GFI1:-0.568908600611;FOS_FOS{B,L1}_JUN{B,D}:-0.570343986341;HIF1A:-0.580830212625;GATA4:-0.60791932758;ZNF238:-0.616715619728;ATF6:-0.62850807687;ZNF384:-0.631065369965;NFE2:-0.638649872159;EGR1..3:-0.639548505565;REST:-0.650870277546;PPARG:-0.684798286146;PITX1..3:-0.689268932533;SMAD1..7,9:-0.692312001192;SRF:-0.7030331634;ZFP161:-0.728025239417;NKX2-3_NKX2-5:-0.758970840136;MAZ:-0.784039329168;PAX5:-0.798751774375;PRDM1:-0.809827077334;PATZ1:-0.816681873104;MEF2{A,B,C,D}:-0.82927171212;NR6A1:-0.870680654736;MTE{core}:-0.909464268014;MED-1{core}:-0.92416420281;TP53:-0.924246395831;TOPORS:-0.925058024104;ZBTB6:-0.945941016768;LHX3,4:-0.956925452689;KLF4:-0.97522764519;ONECUT1,2:-0.989001120972;GFI1B:-1.02676648181;HOX{A4,D4}:-1.06583372498;HOXA9_MEIS1:-1.09443544881;SOX{8,9,10}:-1.09626317751;bHLH_family:-1.09815136043;HSF1,2:-1.10114853017;GTF2I:-1.1051520855;NKX3-2:-1.12129193222;XCPE1{core}:-1.12609161097;MYBL2:-1.13510884193;GZF1:-1.14076605003;EN1,2:-1.14858968372;PAX8:-1.20013322302;CDC5L:-1.28656829148;UFEwm:-1.29731383455;TFAP2B:-1.29747114296;RXR{A,B,G}:-1.31543376898;XBP1:-1.31923682028;TEF:-1.32153523746;SP1:-1.3307239453;SOX17:-1.37103924305;HIC1:-1.37705496067;TLX1..3_NFIC{dimer}:-1.39330765311;EBF1:-1.42645980608;TBP:-1.43648850792;GTF2A1,2:-1.488345612;TFDP1:-1.51769587458;POU6F1:-1.51874835923;HOX{A5,B5}:-1.55949696024;FOXL1:-1.5605468553;TFAP2{A,C}:-1.61417841238;ZIC1..3:-1.6510933289;ESRRA:-1.6852737764;TEAD1:-1.73562000057;POU3F1..4:-1.83507449209;IKZF1:-2.2867958352;PAX1,9:-2.29433812416 | |top_motifs=ELF1,2,4:2.55826061884;RUNX1..3:2.26464567158;ETS1,2:2.10270691616;CDX1,2,4:1.94502362637;T:1.90361827871;PAX3,7:1.87816910354;PDX1:1.87761538408;STAT1,3:1.77530684783;SPI1:1.75157093405;FOX{D1,D2}:1.56795480577;DMAP1_NCOR{1,2}_SMARC:1.51983332109;CRX:1.4899823675;IRF1,2:1.47702201281;RORA:1.43350591514;FOXO1,3,4:1.40476907334;SPIB:1.36263784748;TLX2:1.347131566;FOX{F1,F2,J1}:1.22241804004;ELK1,4_GABP{A,B1}:1.16182108422;BPTF:1.08089551585;IKZF2:1.06091179035;NANOG{mouse}:1.03950238621;HMX1:1.03716589971;IRF7:0.985349758836;TGIF1:0.932837210364;GATA6:0.861120791253;YY1:0.857341078999;NKX2-2,8:0.85678978669;FOXA2:0.822690642711;LEF1_TCF7_TCF7L1,2:0.791991946722;PBX1:0.77387482341;MYOD1:0.715271501233;NKX6-1,2:0.677743818845;BREu{core}:0.604765434258;FOX{I1,J2}:0.602479864412;PAX6:0.587289308784;EP300:0.561830375372;CREB1:0.508823303222;ZBTB16:0.461556521934;ZEB1:0.377064338737;CUX2:0.376603344572;FOXP3:0.376459485703;SPZ1:0.373393468602;RFX2..5_RFXANK_RFXAP:0.340536906643;PAX4:0.331260567313;ATF5_CREB3:0.32415977578;FOXN1:0.321163913731;SOX5:0.319900257813;SNAI1..3:0.287912415017;ALX1:0.279858090325;FOXD3:0.271951029831;POU1F1:0.263261029273;NFIX:0.260229832728;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.227766779336;FOXP1:0.216209634371;NRF1:0.215763896448;NFATC1..3:0.197535882804;PAX2:0.1934579055;SREBF1,2:0.179934816343;NKX2-1,4:0.163772752377;NFKB1_REL_RELA:0.161321294342;STAT5{A,B}:0.145491712212;RBPJ:0.142048121505;STAT2,4,6:0.0889218372336;POU2F1..3:0.0741276468769;NFIL3:0.0700990975287;ZNF143:0.0620802553001;NR1H4:0.0538828094238;ZNF148:0.0511615013658;SOX2:0.048504584935;ATF2:0.048091175455;LMO2:0.0235378398979;TAL1_TCF{3,4,12}:-0.0134149591876;HOX{A6,A7,B6,B7}:-0.0144979086812;AR:-0.026899952346;VSX1,2:-0.0279952907792;MYB:-0.0447288502894;HES1:-0.0591304348062;OCT4_SOX2{dimer}:-0.068625542096;PRRX1,2:-0.0752701071837;ADNP_IRX_SIX_ZHX:-0.0775372672133;CEBPA,B_DDIT3:-0.080387334501;NKX3-1:-0.0978398526816;TBX4,5:-0.115044341239;POU5F1:-0.141184718535;NR5A1,2:-0.144873686284;TFAP4:-0.175521893935;RXRA_VDR{dimer}:-0.185563724498;HLF:-0.205756859576;FOXQ1:-0.216086434907;FOXM1:-0.225617366133;MYFfamily:-0.256284314674;DBP:-0.267424589696;GCM1,2:-0.279128713338;NANOG:-0.288376783142;NFY{A,B,C}:-0.291560399361;HMGA1,2:-0.293912807178;JUN:-0.299779315437;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.300317199331;ESR1:-0.303519136229;AHR_ARNT_ARNT2:-0.314017972137;TFCP2:-0.314558993295;HAND1,2:-0.329702657799;NFE2L1:-0.329891097296;RREB1:-0.331445697444;ARID5B:-0.333604145007;HNF4A_NR2F1,2:-0.341602943696;GLI1..3:-0.342742780006;HNF1A:-0.357465197427;HBP1_HMGB_SSRP1_UBTF:-0.360951276991;E2F1..5:-0.369602893528;NFE2L2:-0.370771901515;FOSL2:-0.374883096795;ZNF423:-0.378302931628;MTF1:-0.378560959914;AIRE:-0.384093889024;MZF1:-0.411017838872;MAFB:-0.4131555707;ALX4:-0.454792677045;NR3C1:-0.456391056151;ATF4:-0.483115398937;BACH2:-0.49325533529;EVI1:-0.555404804965;RFX1:-0.56247810974;NHLH1,2:-0.568703852065;GFI1:-0.568908600611;FOS_FOS{B,L1}_JUN{B,D}:-0.570343986341;HIF1A:-0.580830212625;GATA4:-0.60791932758;ZNF238:-0.616715619728;ATF6:-0.62850807687;ZNF384:-0.631065369965;NFE2:-0.638649872159;EGR1..3:-0.639548505565;REST:-0.650870277546;PPARG:-0.684798286146;PITX1..3:-0.689268932533;SMAD1..7,9:-0.692312001192;SRF:-0.7030331634;ZFP161:-0.728025239417;NKX2-3_NKX2-5:-0.758970840136;MAZ:-0.784039329168;PAX5:-0.798751774375;PRDM1:-0.809827077334;PATZ1:-0.816681873104;MEF2{A,B,C,D}:-0.82927171212;NR6A1:-0.870680654736;MTE{core}:-0.909464268014;MED-1{core}:-0.92416420281;TP53:-0.924246395831;TOPORS:-0.925058024104;ZBTB6:-0.945941016768;LHX3,4:-0.956925452689;KLF4:-0.97522764519;ONECUT1,2:-0.989001120972;GFI1B:-1.02676648181;HOX{A4,D4}:-1.06583372498;HOXA9_MEIS1:-1.09443544881;SOX{8,9,10}:-1.09626317751;bHLH_family:-1.09815136043;HSF1,2:-1.10114853017;GTF2I:-1.1051520855;NKX3-2:-1.12129193222;XCPE1{core}:-1.12609161097;MYBL2:-1.13510884193;GZF1:-1.14076605003;EN1,2:-1.14858968372;PAX8:-1.20013322302;CDC5L:-1.28656829148;UFEwm:-1.29731383455;TFAP2B:-1.29747114296;RXR{A,B,G}:-1.31543376898;XBP1:-1.31923682028;TEF:-1.32153523746;SP1:-1.3307239453;SOX17:-1.37103924305;HIC1:-1.37705496067;TLX1..3_NFIC{dimer}:-1.39330765311;EBF1:-1.42645980608;TBP:-1.43648850792;GTF2A1,2:-1.488345612;TFDP1:-1.51769587458;POU6F1:-1.51874835923;HOX{A5,B5}:-1.55949696024;FOXL1:-1.5605468553;TFAP2{A,C}:-1.61417841238;ZIC1..3:-1.6510933289;ESRRA:-1.6852737764;TEAD1:-1.73562000057;POU3F1..4:-1.83507449209;IKZF1:-2.2867958352;PAX1,9:-2.29433812416 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12206-129D1;search_select_hide=table117:FF:12206-129D1 | |||
}} | }} | ||
Latest revision as of 18:34, 4 June 2020
| Name: | CD8+ T Cells (pluriselect), donor090612, donation2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12184,RDhi10018 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12184
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12184
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.189 |
| 10 | 10 | 0.0185 |
| 100 | 100 | 0.792 |
| 101 | 101 | 0.277 |
| 102 | 102 | 0.525 |
| 103 | 103 | 0.151 |
| 104 | 104 | 0.533 |
| 105 | 105 | 0.0874 |
| 106 | 106 | 0.511 |
| 107 | 107 | 0.243 |
| 108 | 108 | 0.645 |
| 109 | 109 | 0.0616 |
| 11 | 11 | 0.0778 |
| 110 | 110 | 0.44 |
| 111 | 111 | 0.358 |
| 112 | 112 | 0.449 |
| 113 | 113 | 0.143 |
| 114 | 114 | 0.206 |
| 115 | 115 | 0.307 |
| 116 | 116 | 0.929 |
| 117 | 117 | 0.00656 |
| 118 | 118 | 0.307 |
| 119 | 119 | 0.71 |
| 12 | 12 | 0.654 |
| 120 | 120 | 0.494 |
| 121 | 121 | 0.913 |
| 122 | 122 | 0.432 |
| 123 | 123 | 0.041 |
| 124 | 124 | 0.0963 |
| 125 | 125 | 0.699 |
| 126 | 126 | 0.262 |
| 127 | 127 | 0.294 |
| 128 | 128 | 0.635 |
| 129 | 129 | 0.359 |
| 13 | 13 | 0.65 |
| 130 | 130 | 0.751 |
| 131 | 131 | 0.784 |
| 132 | 132 | 0.838 |
| 133 | 133 | 0.753 |
| 134 | 134 | 0.753 |
| 135 | 135 | 0.249 |
| 136 | 136 | 0.934 |
| 137 | 137 | 0.0445 |
| 138 | 138 | 0.204 |
| 139 | 139 | 0.0171 |
| 14 | 14 | 0.256 |
| 140 | 140 | 0.0921 |
| 141 | 141 | 0.636 |
| 142 | 142 | 0.557 |
| 143 | 143 | 1.37755e-5 |
| 144 | 144 | 0.744 |
| 145 | 145 | 0.383 |
| 146 | 146 | 0.226 |
| 147 | 147 | 0.0179 |
| 148 | 148 | 0.114 |
| 149 | 149 | 0.883 |
| 15 | 15 | 0.0825 |
| 150 | 150 | 0.74 |
| 151 | 151 | 0.28 |
| 152 | 152 | 0.54 |
| 153 | 153 | 0.8 |
| 154 | 154 | 0.949 |
| 155 | 155 | 0.0239 |
| 156 | 156 | 0.479 |
| 157 | 157 | 0.352 |
| 158 | 158 | 0.283 |
| 159 | 159 | 0.0878 |
| 16 | 16 | 0.728 |
| 160 | 160 | 0.581 |
| 161 | 161 | 0.298 |
| 162 | 162 | 0.282 |
| 163 | 163 | 0.816 |
| 164 | 164 | 0.417 |
| 165 | 165 | 0.252 |
| 166 | 166 | 0.663 |
| 167 | 167 | 0.55 |
| 168 | 168 | 0.0991 |
| 169 | 169 | 0.445 |
| 17 | 17 | 0.742 |
| 18 | 18 | 0.603 |
| 19 | 19 | 0.656 |
| 2 | 2 | 0.538 |
| 20 | 20 | 0.738 |
| 21 | 21 | 0.309 |
| 22 | 22 | 0.781 |
| 23 | 23 | 0.947 |
| 24 | 24 | 0.407 |
| 25 | 25 | 0.0544 |
| 26 | 26 | 0.56 |
| 27 | 27 | 0.0397 |
| 28 | 28 | 0.395 |
| 29 | 29 | 0.125 |
| 3 | 3 | 0.0294 |
| 30 | 30 | 0.586 |
| 31 | 31 | 0.648 |
| 32 | 32 | 0.133 |
| 33 | 33 | 0.483 |
| 34 | 34 | 0.659 |
| 35 | 35 | 0.0722 |
| 36 | 36 | 0.0514 |
| 37 | 37 | 0.21 |
| 38 | 38 | 0.549 |
| 39 | 39 | 0.562 |
| 4 | 4 | 0.797 |
| 40 | 40 | 0.539 |
| 41 | 41 | 0.15 |
| 42 | 42 | 0.0515 |
| 43 | 43 | 0.226 |
| 44 | 44 | 0.535 |
| 45 | 45 | 0.958 |
| 46 | 46 | 0.125 |
| 47 | 47 | 0.0822 |
| 48 | 48 | 0.128 |
| 49 | 49 | 0.142 |
| 5 | 5 | 0.186 |
| 50 | 50 | 0.614 |
| 51 | 51 | 0.512 |
| 52 | 52 | 0.467 |
| 53 | 53 | 0.143 |
| 54 | 54 | 0.447 |
| 55 | 55 | 0.22 |
| 56 | 56 | 0.494 |
| 57 | 57 | 0.625 |
| 58 | 58 | 0.0327 |
| 59 | 59 | 0.259 |
| 6 | 6 | 0.96 |
| 60 | 60 | 0.245 |
| 61 | 61 | 0.131 |
| 62 | 62 | 0.0165 |
| 63 | 63 | 0.649 |
| 64 | 64 | 0.192 |
| 65 | 65 | 0.613 |
| 66 | 66 | 0.99 |
| 67 | 67 | 0.928 |
| 68 | 68 | 0.518 |
| 69 | 69 | 0.92 |
| 7 | 7 | 0.194 |
| 70 | 70 | 0.0172 |
| 71 | 71 | 0.106 |
| 72 | 72 | 0.0747 |
| 73 | 73 | 0.605 |
| 74 | 74 | 0.334 |
| 75 | 75 | 0.0356 |
| 76 | 76 | 0.295 |
| 77 | 77 | 0.698 |
| 78 | 78 | 0.161 |
| 79 | 79 | 0.408 |
| 8 | 8 | 0.878 |
| 80 | 80 | 0.00167 |
| 81 | 81 | 0.309 |
| 82 | 82 | 0.0942 |
| 83 | 83 | 0.984 |
| 84 | 84 | 0.395 |
| 85 | 85 | 0.733 |
| 86 | 86 | 0.156 |
| 87 | 87 | 0.607 |
| 88 | 88 | 0.775 |
| 89 | 89 | 0.876 |
| 9 | 9 | 0.358 |
| 90 | 90 | 0.0107 |
| 91 | 91 | 0.895 |
| 92 | 92 | 0.29 |
| 93 | 93 | 0.223 |
| 94 | 94 | 0.0625 |
| 95 | 95 | 0.0229 |
| 96 | 96 | 0.128 |
| 97 | 97 | 0.442 |
| 98 | 98 | 0.236 |
| 99 | 99 | 0.138 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12184
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000030 CD8-positive T cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000625 (CD8-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000030 (CD8-positive T cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
