FF:12234-129G2: Difference between revisions

Latest revision as of 18:35, 4 June 2020

Name:	mature adipocyte, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs12562
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	adipose tissue
dev stage	NA
sex	female
age	28
cell type	adipocyte
cell line	NA
company	NA
collaboration	Peter Arner (Karolinska Institutet)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005806

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12562		CAGE		DRX008088		DRR008960

Accession ID Hg19

Library id		BAM		CTSS
CNhs12562		DRZ000385		DRZ001770

Accession ID Hg38

Library id		BAM		CTSS
CNhs12562		DRZ011735		DRZ013120

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.147
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.393
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.123
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0.472
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0239
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.212
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0818
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.21
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.696
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.372
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.867
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.179
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.56
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.123
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.364
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.123
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.613
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.597
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	1.084
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.123
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12562

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0778
MA0003.1	MA0003.1	0.997
MA0004.1	MA0004.1	0.659
MA0006.1	MA0006.1	0.917
MA0007.1	MA0007.1	0.761
MA0009.1	MA0009.1	0.233
MA0014.1	MA0014.1	0.873
MA0017.1	MA0017.1	0.0832
MA0018.2	MA0018.2	0.0442
MA0019.1	MA0019.1	0.244
MA0024.1	MA0024.1	0.121
MA0025.1	MA0025.1	2.19101e-4
MA0027.1	MA0027.1	0.713
MA0028.1	MA0028.1	0.00162
MA0029.1	MA0029.1	0.925
MA0030.1	MA0030.1	0.00102
MA0031.1	MA0031.1	2.46061e-5
MA0035.2	MA0035.2	0.881
MA0038.1	MA0038.1	0.259
MA0039.2	MA0039.2	0.364
MA0040.1	MA0040.1	0.08
MA0041.1	MA0041.1	0.0254
MA0042.1	MA0042.1	0.0445
MA0043.1	MA0043.1	5.9108e-5
MA0046.1	MA0046.1	0.786
MA0047.2	MA0047.2	0.00284
MA0048.1	MA0048.1	0.761
MA0050.1	MA0050.1	0.196
MA0051.1	MA0051.1	0.789
MA0052.1	MA0052.1	1.03653e-5
MA0055.1	MA0055.1	0.355
MA0057.1	MA0057.1	0.153
MA0058.1	MA0058.1	0.902
MA0059.1	MA0059.1	0.0752
MA0060.1	MA0060.1	0.939
MA0061.1	MA0061.1	0.6
MA0062.2	MA0062.2	5.85054e-6
MA0065.2	MA0065.2	0.0256
MA0066.1	MA0066.1	0.0493
MA0067.1	MA0067.1	0.0606
MA0068.1	MA0068.1	1.17707e-5
MA0069.1	MA0069.1	0.451
MA0070.1	MA0070.1	0.286
MA0071.1	MA0071.1	0.982
MA0072.1	MA0072.1	0.0651
MA0073.1	MA0073.1	0.688
MA0074.1	MA0074.1	0.589
MA0076.1	MA0076.1	0.0101
MA0077.1	MA0077.1	0.0438
MA0078.1	MA0078.1	0.0779
MA0079.2	MA0079.2	0.112
MA0080.2	MA0080.2	0.0123
MA0081.1	MA0081.1	0.235
MA0083.1	MA0083.1	0.0494
MA0084.1	MA0084.1	0.855
MA0087.1	MA0087.1	0.916
MA0088.1	MA0088.1	0.229
MA0090.1	MA0090.1	0.0696
MA0091.1	MA0091.1	0.454
MA0092.1	MA0092.1	0.857
MA0093.1	MA0093.1	0.662
MA0099.2	MA0099.2	0.103
MA0100.1	MA0100.1	0.34
MA0101.1	MA0101.1	0.0011
MA0102.2	MA0102.2	0.02
MA0103.1	MA0103.1	4.03641e-6
MA0104.2	MA0104.2	0.183
MA0105.1	MA0105.1	0.0204
MA0106.1	MA0106.1	0.0702
MA0107.1	MA0107.1	1.78923e-4
MA0108.2	MA0108.2	1.2624e-7
MA0111.1	MA0111.1	0.213
MA0112.2	MA0112.2	0.022
MA0113.1	MA0113.1	0.067
MA0114.1	MA0114.1	4.38775e-4
MA0115.1	MA0115.1	0.493
MA0116.1	MA0116.1	1.31075e-4
MA0117.1	MA0117.1	0.972
MA0119.1	MA0119.1	0.859
MA0122.1	MA0122.1	0.249
MA0124.1	MA0124.1	0.331
MA0125.1	MA0125.1	0.513
MA0131.1	MA0131.1	0.364
MA0135.1	MA0135.1	0.352
MA0136.1	MA0136.1	0.00963
MA0137.2	MA0137.2	1.73365e-11
MA0138.2	MA0138.2	0.866
MA0139.1	MA0139.1	0.0426
MA0140.1	MA0140.1	0.76
MA0141.1	MA0141.1	0.563
MA0142.1	MA0142.1	0.162
MA0143.1	MA0143.1	0.552
MA0144.1	MA0144.1	6.31709e-5
MA0145.1	MA0145.1	0.708
MA0146.1	MA0146.1	0.579
MA0147.1	MA0147.1	0.0855
MA0148.1	MA0148.1	0.013
MA0149.1	MA0149.1	0.728
MA0150.1	MA0150.1	0.525
MA0152.1	MA0152.1	0.0645
MA0153.1	MA0153.1	0.0589
MA0154.1	MA0154.1	0.283
MA0155.1	MA0155.1	0.567
MA0156.1	MA0156.1	0.00463
MA0157.1	MA0157.1	3.23102e-4
MA0159.1	MA0159.1	0.589
MA0160.1	MA0160.1	0.233
MA0162.1	MA0162.1	0.355
MA0163.1	MA0163.1	1.6534e-8
MA0164.1	MA0164.1	0.904
MA0258.1	MA0258.1	0.00799
MA0259.1	MA0259.1	0.173

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12562

Novel motif	Logo	P-value
1	1	0.128
10	10	0.407
100	100	0.853
101	101	0.566
102	102	0.0875
103	103	0.395
104	104	0.997
105	105	0.83
106	106	0.926
107	107	0.711
108	108	0.452
109	109	0.093
11	11	0.0828
110	110	0.0707
111	111	0.0561
112	112	0.446
113	113	0.571
114	114	0.0247
115	115	0.595
116	116	0.0946
117	117	0.0162
118	118	0.328
119	119	0.639
12	12	0.378
120	120	0.0678
121	121	0.721
122	122	0.926
123	123	0.0183
124	124	0.463
125	125	0.11
126	126	0.978
127	127	0.129
128	128	0.798
129	129	0.748
13	13	0.928
130	130	0.308
131	131	0.29
132	132	0.566
133	133	0.431
134	134	0.602
135	135	0.757
136	136	0.354
137	137	0.769
138	138	0.0899
139	139	0.668
14	14	0.918
140	140	0.004
141	141	0.366
142	142	0.944
143	143	0.03
144	144	0.648
145	145	0.113
146	146	0.313
147	147	0.573
148	148	0.0837
149	149	0.518
15	15	0.326
150	150	0.726
151	151	0.319
152	152	0.858
153	153	0.0491
154	154	0.249
155	155	0.215
156	156	0.38
157	157	0.567
158	158	0.394
159	159	0.188
16	16	0.176
160	160	0.379
161	161	0.301
162	162	0.701
163	163	0.733
164	164	0.323
165	165	0.359
166	166	0.839
167	167	0.962
168	168	0.852
169	169	0.157
17	17	0.309
18	18	0.0802
19	19	0.994
2	2	0.666
20	20	0.891
21	21	0.326
22	22	0.681
23	23	0.508
24	24	0.858
25	25	0.96
26	26	0.0625
27	27	0.211
28	28	0.963
29	29	0.171
3	3	0.149
30	30	0.485
31	31	0.601
32	32	2.18799e-4
33	33	0.729
34	34	0.87
35	35	0.241
36	36	0.789
37	37	0.474
38	38	0.386
39	39	0.0884
4	4	0.139
40	40	0.35
41	41	0.928
42	42	0.474
43	43	0.416
44	44	0.00641
45	45	0.484
46	46	0.0463
47	47	0.0797
48	48	0.0595
49	49	0.101
5	5	0.158
50	50	0.796
51	51	0.568
52	52	0.285
53	53	0.796
54	54	0.796
55	55	0.0861
56	56	0.244
57	57	0.341
58	58	0.738
59	59	0.107
6	6	0.952
60	60	0.442
61	61	0.0895
62	62	0.587
63	63	0.56
64	64	0.0664
65	65	0.6
66	66	0.608
67	67	0.439
68	68	0.842
69	69	0.00288
7	7	0.337
70	70	0.0287
71	71	0.0453
72	72	0.76
73	73	0.347
74	74	0.787
75	75	0.12
76	76	0.337
77	77	0.254
78	78	0.853
79	79	0.0724
8	8	0.242
80	80	0.181
81	81	0.319
82	82	0.741
83	83	0.013
84	84	0.809
85	85	0.608
86	86	0.761
87	87	0.267
88	88	0.851
89	89	0.142
9	9	0.585
90	90	0.943
91	91	0.377
92	92	0.86
93	93	0.669
94	94	0.143
95	95	0.108
96	96	0.884
97	97	0.348
98	98	0.323
99	99	0.354

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12562

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000266 human mature adipocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000266 (human mature adipocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005806
+|accession_numbers=CAGE;DRX008088;DRR008960;DRZ000385;DRZ001770;DRZ011735;DRZ013120
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!2.36!261.31!PPARG;;chr7:73038839..73038862,-!p1@MLXIPL!2.35!224.92!MLXIPL;;chr19:45971246..45971265,+!p1@FOSB!2.29!3327.91!FOSB;;chr19:33793430..33793447,-!p1@CEBPA!2.21!643.61!CEBPA;;chr16:85932760..85932775,+!p1@IRF8!2.07!116.39!IRF8;;chr11:113930425..113930471,+!p1@ZBTB16!1.86!100.98!ZBTB16;;chr9:110252035..110252057,-!p1@KLF4!1.85!1057.72!KLF4;;chr9:1050331..1050363,+!p1@DMRT2!1.84!68.53!DMRT2;;chr15:42749722..42749739,-!p2@ZFP106!1.83!116.72!ZFP106;;chr8:55370487..55370503,+!p1@SOX17!1.83!66.23!SOX17;;chr3:12392991..12393030,+!p7@PPARG!1.78!59.34!PPARG;;chr17:53342311..53342400,+!p1@HLF!1.77!66.56!HLF;;chr14:75745523..75745537,+!p1@FOS!1.74!5999.74!FOS;;chr7:19157248..19157268,-!p1@TWIST1!1.72!138.36!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.69!117.05!EBF1;;chr3:12329397..12329433,+!p2@PPARG!1.59!84.92!PPARG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.56!35.08!ZBED1;;chr6:19837592..19837621,+!p1@ID4!1.54!197.71!ID4;;chr3:12392932..12392962,+!p8@PPARG!1.52!31.80!PPARG;;chr3:126076242..126076257,-!p1@KLF15!1.51!39.02!KLF15;;chr10:63809013..63809041,+!p3@ARID5B!1.46!149.18!ARID5B;;chr2:239756671..239756732,+!p1@TWIST2!1.45!84.92!TWIST2;;chr21:39870339..39870443,-!p1@ERG!1.45!26.89!ERG;;chr17:40440481..40440550,+!p1@STAT5A!1.42!175.41!STAT5A;;chr1:212782094..212782109,+!p1@ATF3!1.40!624.93!ATF3;;chr11:47279504..47279563,+!p1@NR1H3!1.40!53.77!NR1H3;;chr2:145271342..145271377,-!p5@ZEB2!1.40!23.93!ZEB2;;chr22:41763452..41763466,+!p2@TEF!1.39!23.61!TEF;;chr1:61548225..61548299,+!p1@NFIA!1.36!277.71!NFIA;;chr15:90294062..90294079,-!p2@MESP1!1.35!21.64!MESP1;;chr11:113930401..113930422,+!p3@ZBTB16!1.35!21.64!ZBTB16;;chr20:39317868..39317884,-!p1@MAFB!1.34!242.30!MAFB;;chr10:63808574..63808584,+!p27@ARID5B!1.34!20.98!ARID5B;;chr12:54779511..54779577,-!p5@ZNF385A!1.34!20.98!ZNF385A;;chr19:12902289..12902307,+!p1@JUNB!1.33!4460.71!JUNB;;chr1:59249688..59249703,-!p3@JUN!1.33!119.67!JUN;;chr1:59249707..59249727,-!p1@JUN!1.32!802.30!JUN;;chrX:66763856..66763896,+!p1@AR!1.32!28.20!AR;;chr13:41240717..41240735,-!p2@FOXO1!1.31!129.18!FOXO1;;chr3:12329358..12329393,+!p3@PPARG!1.31!47.21!PPARG;;chr20:50179368..50179392,-!p2@NFATC2!1.31!24.92!NFATC2;;chr12:24715376..24715432,-!p1@SOX5!1.31!24.26!SOX5;;chr10:45495946..45495976,+!p2@ZNF22!1.31!19.34!ZNF22;;chr6:152128810..152128827,+!p2@ESR1!1.31!19.34!ESR1;;chr3:187463179..187463201,-!p2@BCL6!1.30!77.05!BCL6;;chr7:19157043..19157088,-!p2@TWIST1!1.30!47.21!TWIST1;;chr5:137801160..137801176,+!p1@EGR1!1.29!1761.99!EGR1;;chr10:63809077..63809089,+!p5@ARID5B!1.29!40.00!ARID5B;;chr9:77112244..77112262,+!p1@RORB!1.29!20.66!RORB;;chr13:41240737..41240787,-!p1@FOXO1!1.28!211.48!FOXO1;;chr3:126076264..126076305,-!p2@KLF15!1.28!25.25!KLF15;;chr19:16435625..16435682,+!p1@KLF2!1.26!543.94!KLF2;;chr17:17726907..17726958,-!p2@SREBF1!1.26!105.25!SREBF1;;chr15:90294087..90294115,-!p1@MESP1!1.26!17.38!MESP1;;chr17:46690839..46690884,-!p1@HOXB8!1.26!17.05!HOXB8;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.28!BHLHE41;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!16.07!MLXIPL;;chr12:26277956..26277980,-!p1@BHLHE41!1.22!55.41!BHLHE41;;chr2:43454125..43454146,-!p2@ZFP36L2!1.22!15.74!ZFP36L2;;chr10:63809106..63809127,+!p1@ARID5B!1.21!200.66!ARID5B;;chr3:150126101..150126118,+!p6@TSC22D2!1.21!24.59!TSC22D2;;chr1:61548374..61548415,+!p4@NFIA!1.20!27.54!NFIA;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.57!TWIST2;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!380.99!TSC22D3;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.77!SOX7;;chr11:113930291..113930339,+!p2@ZBTB16!1.16!21.97!ZBTB16;;chr12:26277817..26277863,-!p2@BHLHE41!1.16!18.03!BHLHE41;;chr3:12393032..12393047,+!p15@PPARG!1.16!13.44!PPARG;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.11!HOXA3;;chr1:119530493..119530572,-!p1@TBX15!1.15!13.11!TBX15;;chr8:25902876..25902936,-!p1@EBF2!1.13!12.46!EBF2;;chr3:39195075..39195088,-!p1@CSRNP1!1.12!76.07!CSRNP1;;chr7:27196267..27196311,-!p1@HOXA7!1.12!12.13!HOXA7;;chr3:101568349..101568365,+!p1@NFKBIZ!1.11!610.17!NFKBIZ;;chr2:145274900..145274934,-!p4@ZEB2!1.11!72.13!ZEB2;;chrX:106960180..106960197,-!p2@TSC22D3!1.11!45.25!TSC22D3;;chr5:137804357..137804390,+!p4@EGR1!1.11!14.10!EGR1;;chr22:38598086..38598105,+!p1@MAFF!1.10!124.92!MAFF;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.00!ZEB2;;chr5:137804405..137804444,+!p3@EGR1!1.10!13.77!EGR1;;chr8:48650715..48650735,-!p1@CEBPD!1.09!1436.08!CEBPD;;chr8:128748470..128748487,+!p1@MYC!1.08!1219.03!MYC;;chr10:51572408..51572454,+!p3@NCOA4!1.08!64.59!NCOA4;;chr2:28618532..28618610,+!p4@FOSL2!1.08!19.02!FOSL2;;chrX:66763914..66763933,+!p3@AR!1.08!11.15!AR;;chr19:18392422..18392440,-!p1@JUND!1.07!1485.92!JUND;;chr5:2751762..2751784,-!p1@IRX2!1.07!10.82!IRX2;;chr14:35873947..35873965,-!p1@NFKBIA!1.06!672.79!NFKBIA;;chr6:126240380..126240430,+!p2@NCOA7!1.06!27.54!NCOA7;;chr3:24536253..24536328,-!p1@THRB!1.06!20.00!THRB;;chr12:54394309..54394336,+!p2@HOXC9!1.06!10.49!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!1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IB;;chr11:113930477..113930488,+!p4@ZBTB16!0.80!5.25!ZBTB16;;chr17:38219209..38219230,+!p1@THRA!0.79!74.10!THRA;;chr14:21566731..21566836,-!p1@ZNF219!0.79!60.00!ZNF219;;chr10:8096772..8096787,+!p2@GATA3!0.79!6.23!GATA3;;chr19:13106214..13106382,+!p1@NFIX!0.78!128.85!NFIX;;chr3:69788576..69788648,+!p1@MITF!0.77!28.20!MITF;;chr2:157189180..157189290,-!p1@NR4A2!0.77!27.54!NR4A2;;chr10:63809134..63809145,+!p6@ARID5B!0.77!12.13!ARID5B;;chr13:27998871..27998884,+!p4@GTF3A!0.77!7.87!GTF3A;;chr12:72056749..72056767,+!p6@THAP2!0.77!5.57!THAP2;;chr12:24715342..24715354,-!p4@SOX5!0.77!4.92!SOX5;;chr1:119530706..119530736,-!p3@TBX15!0.77!4.92!TBX15;;chr9:14314566..14314618,-!p1@NFIB!0.76!62.30!NFIB;;chr9:94186085..94186096,-!p3@NFIL3!0.76!8.20!NFIL3;;chr20:51588873..51588953,+!p1@TSHZ2!0.76!6.56!TSHZ2;;chr8:106330696..106330719,+!p2@ZFPM2!0.76!6.23!ZFPM2;;chr3:114866084..114866118,-!p2@ZBTB20!0.75!18.36!ZBTB20;;chr1:61548069..61548102,+!p3@NFIA!0.75!12.13!NFIA;;chr1:119530636..119530653,-!p2@TBX15!0.75!4.59!TBX15;;chr6:152011654..152011682,+!p1@ESR1!0.75!4.59!ESR1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.75!4.59!RUNX1T1;;chr9:22447422..22447483,+!p1@DMRTA1!0.75!4.59!DMRTA1;;chr12:115121770..115121781,-!p4@TBX3!0.75!4.59!TBX3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.75!4.59!HOXC5;;chr2:28615716..28615733,+!p1@FOSL2!0.74!236.40!FOSL2;;chrX:106960221..106960236,-!p3@TSC22D3!0.74!13.44!TSC22D3;;chr20:62680984..62680999,-!p1@SOX18!0.74!6.23!SOX18;;chr4:87928353..87928401,+!p4@AFF1!0.73!21.97!AFF1;;chr19:6110555..6110617,-!p2@RFX2!0.73!16.07!RFX2;;chr3:187463220..187463232,-!p3@BCL6!0.73!14.43!BCL6;;chr17:17723626..17723663,-!p4@SREBF1!0.73!9.51!SREBF1;;chr12:124457725..124457736,+!p2@ZNF664!0.73!8.20!ZNF664;;chrX:131624056..131624069,-!p2@MBNL3!0.73!6.23!MBNL3;;chr2:48541789..48541874,+!p1@FOXN2!0.72!109.18!FOXN2;;chr19:46271505..46271575,-!p2@SIX5!0.72!11.80!SIX5;;chr1:158985493..158985535,+!p4@IFI16!0.72!6.89!IFI16;;chr7:106809470..106809481,+!p2@HBP1!0.72!6.23!HBP1;;chr12:72056800..72056834,+!p1@THAP2!0.72!5.90!THAP2;;chr10:119303078..119303169,+!p2@EMX2!0.72!4.26!EMX2;;chr10:131762504..131762555,-!p1@EBF3!0.72!4.26!EBF3;;chr11:67007760..67007773,+!p17@KDM2A!0.72!4.26!KDM2A;;chr12:54380404..54380433,+!p3@HOXC10!0.72!4.26!HOXC10;;chrX:66764343..66764362,+!p4@AR!0.72!4.26!AR;;chr3:21792682..21792720,-!p1@ZNF385D!0.72!4.26!ZNF385D;;chr17:46687935..46687950,-!p3@HOXB7!0.72!4.26!HOXB7;;chr10:64576105..64576133,-!p1@EGR2!0.71!9.18!EGR2;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.25!TBX18;;chr14:89883509..89883587,-!p2@FOXN3!0.70!30.82!FOXN3;;chr13:27998831..27998851,+!p2@GTF3A!0.70!26.89!GTF3A;;chr1:164528384..164528409,+!p3@PBX1!0.70!13.77!PBX1;;chr14:35872962..35873025,-!p3@NFKBIA!0.70!11.15!NFKBIA;;chr17:17726892..17726903,-!p6@SREBF1!0.70!4.59!SREBF1;;chr2:145277640..145277771,-!p1@ZEB2!0.69!59.67!ZEB2;;chr2:208031542..208031595,-!p2@KLF7!0.69!31.48!KLF7;;chr9:137218341..137218361,+!p2@RXRA!0.69!18.03!RXRA;;chr20:48807615..48807644,+!p6@CEBPB!0.69!6.89!CEBPB;;chr1:151804244..151804310,-!p1@RORC!0.69!3.93!RORC;;chr11:47279568..47279577,+!p8@NR1H3!0.69!3.93!NR1H3;;chr17:41739283..41739297,-!p1@MEOX1!0.69!3.93!MEOX1;;chr17:6926362..6926377,+!p1@BCL6B!0.69!3.93!BCL6B;;chr3:141868293..141868355,-!p2@TFDP2!0.68!38.03!TFDP2;;chr3:114343826..114343869,-!p4@ZBTB20!0.68!8.20!ZBTB20;;chr13:27998854..27998866,+!p3@GTF3A!0.68!8.20!GTF3A;;chr1:8483723..8483752,-!p12@RERE!0.68!6.23!RERE;;chr2:43453734..43453751,-!p1@ZFP36L2!0.67!460.99!ZFP36L2;;chr10:111985713..111985774,+!p2@MXI1!0.67!40.33!MXI1;;chr5:124082279..124082319,-!p3@ZNF608!0.67!4.59!ZNF608;;chr9:137218281..137218340,+!p1@RXRA!0.66!117.71!RXRA;;chr9:2015335..2015370,+!p1@SMARCA2!0.66!50.16!SMARCA2;;chr9:2017365..2017380,+!p9@SMARCA2!0.66!4.59!SMARCA2;;chr6:41514178..41514192,+!p4@FOXP4!0.66!4.26!FOXP4;;chr5:158527020..158527029,-!p13@EBF1!0.66!3.61!EBF1;;chr5:158527253..158527264,-!p10@EBF1!0.66!3.61!EBF1;;chr5:3595934..3595957,+!p2@IRX1!0.66!3.61!IRX1;;chr5:71803177..71803255,-!p1@ZNF366!0.66!3.61!ZNF366;;chr6:106546834..106546850,+!p4@PRDM1!0.66!3.61!PRDM1;;chrX:66765139..66765146,+!p5@AR!0.66!3.61!AR;;chr3:114477881..114477914,-!p17@ZBTB20!0.66!3.61!ZBTB20;;chr12:56415246..56415286,+!p2@IKZF4!0.66!3.61!IKZF4;;chr12:85673977..85674015,+!p1@ALX1!0.66!3.61!ALX1;;chr17:7197911..7197964,-!p1@YBX2!0.66!3.61!YBX2;;chr13:45010939..45011033,-!p1@TSC22D1!0.65!270.17!TSC22D1;;chr6:144329384..144329405,-!p1@PLAGL1!0.65!47.21!PLAGL1;;chr5:172483347..172483407,+!p1@C5orf41!0.65!30.16!CREBRF;;chr10:38265517..38265591,-!p1@ZNF25!0.65!15.41!ZNF25;;chr15:66994663..66994680,+!p1@SMAD6!0.65!9.18!SMAD6;;chr8:124286670..124286702,-!p3@ZHX1!0.65!6.56!ZHX1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.65!4.59!L3MBTL4;;chr11:62369806..62369837,-!p8@MTA2!0.65!4.59!MTA2;;chr4:140098339..140098392,-!p1@ELF2!0.64!32.46!ELF2;;chr17:7382856..7382889,-!p3@ZBTB4!0.64!15.41!ZBTB4;;chr6:108881012..108881034,+!p3@FOXO3!0.64!13.77!FOXO3;;chrX:106959661..106959763,-!p4@TSC22D3!0.64!11.15!TSC22D3;;chr22:3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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000136
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/mature%2520adipocyte%252c%2520donor4.CNhs12562.12234-129G2.hg38.nobarcode.ctss.bed.gz
 |id=FF:12234-129G2
 |is_a=EFO:0002091;;FF:0000266
 |is_obsolete=
+|library_id=CNhs12562
+|library_id_phase_based=2:CNhs12562
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12234
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12234
 |name=mature adipocyte, donor4
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12562,LSID921,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=129
 |rna_catalog_number=
@@ Line 60: / Line 79: @@
 |rna_weight_ug=4.9
 |sample_age=28
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 81: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12234-129G2;search_select_hide=table117:FF:12234-129G2
 }}

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Latest revision as of 18:35, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0