FF:12236-129G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005529 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008538;DRR009410;DRZ000835;DRZ002220;DRZ012185;DRZ013570 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002537 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000092,FF:0000101,FF:0000001,FF:0000010 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.62!411.89!HAND1;;chr2:19558373..19558392,-!p1@OSR1!1.91!212.92!OSR1;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.43!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.85!69.19!ZBED2;;chr8:102504651..102504683,+!p1@GRHL2!1.82!65.63!GRHL2;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.67!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.39!PEG3;;chr2:46524897..46524911,+!p2@EPAS1!1.61!108.10!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.76!TFAP2C;;chr4:188916918..188916942,+!p1@ZFP42!1.53!33.26!ZFP42;;chr1:209979467..209979494,-!p1@IRF6!1.50!34.45!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.45!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.46!27.91!ELF3;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.85!ZNF488;;chr8:102504690..102504704,+!p3@GRHL2!1.42!25.54!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.41!24.65!HAND1;;chr8:102504979..102505010,+!p2@GRHL2!1.41!24.65!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.98!IRX2;;chr11:120110863..120110908,+!p2@POU2F3!1.35!21.38!POU2F3;;chr4:174450089..174450153,-!p2@HAND2!1.34!20.79!HAND2;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.26!TFAP2A;;chr1:38512457..38512474,-!p1@POU3F1!1.33!22.27!POU3F1;;chr5:3595934..3595957,+!p2@IRX1!1.25!16.63!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.23!16.04!HAND2;;chr5:174151612..174151633,+!p2@MSX2!1.20!14.85!MSX2;;chr3:111314230..111314241,-!p2@ZBED2!1.19!14.55!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.17!23.16!MSX2;;chr6:126240356..126240379,+!p7@NCOA7!1.17!16.93!NCOA7;;chrY:2803415..2803468,+!p1@ZFY!1.17!13.66!ZFY;;chr19:17356189..17356221,-!p2@NR2F6!1.16!21.98!NR2F6;;chr11:120110844..120110861,+!p3@POU2F3!1.16!13.36!POU2F3;;chr2:46612891..46612907,+!p10@EPAS1!1.15!13.07!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.14!12.77!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.77!ELF3;;chr3:24536253..24536328,-!p1@THRB!1.13!23.76!THRB;;chr10:8100691..8100732,+!p5@GATA3!1.12!12.18!GATA3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.07!10.69!LRRFIP1;;chr3:24536485..24536500,-!p3@THRB!1.05!10.10!THRB;;chr2:46524878..46524891,+!p3@EPAS1!1.03!17.22!EPAS1;;chr2:68592406..68592424,+!p1@PLEK!1.03!9.80!PLEK;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.80!KDM5D;;chr6:10419768..10419819,-!p6@TFAP2A!1.03!9.80!TFAP2A;;chr2:46524537..46524553,+!p1@EPAS1!1.02!950.88!EPAS1;;chr6:19837592..19837621,+!p1@ID4!1.01!57.91!ID4;;chr5:2751785..2751808,-!p2@IRX2!1.01!9.21!IRX2;;chr1:164528410..164528428,+!p1@PBX1!1.00!69.79!PBX1;;chr6:126240380..126240430,+!p2@NCOA7!1.00!23.76!NCOA7;;chr20:18038521..18038571,-!p1@OVOL2!1.00!8.91!OVOL2;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.32!IRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!172.24!SNAI2;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.50!GATA3;;chr5:153857819..153857824,-!p3@HAND1!0.96!8.02!HAND1;;chr16:29818199..29818216,+!p11@MAZ!0.95!13.07!MAZ;;chr8:102504932..102504952,+!p4@GRHL2!0.93!7.42!GRHL2;;chr12:53625966..53626012,-!p2@RARG!0.91!19.30!RARG;;chr9:99180617..99180658,-!p1@ZNF367!0.91!16.04!ZNF367;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.13!IRF8;;chrX:56258844..56258882,+!p1@KLF8!0.90!9.80!KLF8;;chr19:22193731..22193751,-!p1@ZNF208!0.89!6.83!ZNF208;;chr5:3595961..3595975,+!p3@IRX1!0.89!6.83!IRX1;;chr10:8097321..8097348,+!p4@GATA3!0.89!6.83!GATA3;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.65!SNAI2;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.53!YBX2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.88!6.53!ZNF676;;chr11:47400078..47400106,-!p1@SPI1!0.88!6.53!SPI1;;chr14:75988771..75988826,+!p1@BATF!0.87!8.61!BATF;;chr12:54778471..54778528,-!p1@ZNF385A!0.86!6.24!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!0.85!11.28!NR4A3;;chr9:99180662..99180690,-!p2@ZNF367!0.85!8.61!ZNF367;;chr20:32274179..32274213,-!p1@E2F1!0.84!41.58!E2F1;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr15:96874927..96874938,+!p8@NR2F2!0.83!13.07!NR2F2;;chr20:2673383..2673441,+!p1@EBF4!0.83!9.50!EBF4;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.64!SOX11;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.02!ZNF860;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.83!TBX18;;chr9:110250697..110250738,-!p2@KLF4!0.81!6.53!KLF4;;chr2:46524865..46524870,+!p9@EPAS1!0.80!6.24!EPAS1;;chr12:81101472..81101483,+!p2@MYF6!0.80!5.35!MYF6;;chr6:10412576..10412599,-!p5@TFAP2A!0.80!5.35!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.79!59.99!KLF5;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!5.05!TFAP2A;;chr4:299227..299272,-!p1@ZNF732!0.78!5.05!ZNF732;;chr15:60884706..60884743,-!p1@RORA!0.77!27.91!RORA;;chr19:33793430..33793447,-!p1@CEBPA!0.77!22.57!CEBPA;;chr4:149363494..149363543,-!p1@NR3C2!0.76!4.75!NR3C2;;chr6:10419824..10419840,-!p9@TFAP2A!0.76!4.75!TFAP2A;;chr13:45048432..45048452,-!p29@TSC22D1!0.76!4.75!TSC22D1;;chr16:29817841..29817865,+!p1@MAZ!0.75!109.88!MAZ;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.99!MAFB;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.45!FOXG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.73!324.29!TSC22D1;;chr1:164528445..164528459,+!p2@PBX1!0.73!14.85!PBX1;;chr19:22235279..22235301,+!p1@ZNF257!0.72!8.61!ZNF257;;chr15:96869511..96869525,+!p16@NR2F2!0.72!4.75!NR2F2;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.25!PBX1;;chr20:32274150..32274166,-!p2@E2F1!0.71!8.32!E2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.71!8.02!NR2F2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.71!4.16!SMARCE1;;chrX:56258900..56258917,+!p4@KLF8!0.71!4.16!KLF8;;chr19:49140609..49140643,-!p1@DBP!0.70!25.24!DBP;;chr12:80084737..80084763,-!p3@PAWR!0.70!16.63!PAWR;;chr2:46602879..46602899,+!p8@EPAS1!0.70!5.05!EPAS1;;chr3:170075124..170075136,+!p4@SKIL!0.69!5.64!SKIL;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.35!GRHL1;;chr2:16080659..16080685,+!p1@MYCN!0.69!3.86!MYCN;;chr17:7493405..7493419,-!p1@SOX15!0.69!3.86!SOX15;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.86!MAFK;;chr9:110252035..110252057,-!p1@KLF4!0.68!69.49!KLF4;;chr17:53342311..53342400,+!p1@HLF!0.68!4.45!HLF;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.59!FOSB;;chr11:2292226..2292270,-!p1@ASCL2!0.66!3.56!ASCL2;;chr14:33403881..33403924,+!p1@NPAS3!0.66!3.56!NPAS3;;chr7:63505799..63505904,+!p1@ZNF727!0.66!3.56!ZNF727;;chr22:21771656..21771662,+!p1@HIC2!0.66!3.56!HIC2;;chr12:80084303..80084332,-!p1@PAWR!0.65!23.46!PAWR;;chr2:238600933..238600985,+!p3@LRRFIP1!0.65!21.98!LRRFIP1;;chr19:36391434..36391450,-!p1@NFKBID!0.65!7.42!NFKBID;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.64!4.75!ZNF700;;chr18:6414884..6414942,-!p1@L3MBTL4!0.64!4.45!L3MBTL4;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.45!NCOA7;;chr8:57123815..57123867,-!p1@PLAG1!0.63!15.44!PLAG1;;chr8:102217679..102217719,-!p2@ZNF706!0.63!13.07!ZNF706;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.53!NR1D1;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.27!IKZF2;;chr2:5832493..5832507,+!p2@SOX11!0.63!3.27!SOX11;;chr3:24536231..24536249,-!p4@THRB!0.63!3.27!THRB;;chr3:24536332..24536358,-!p2@THRB!0.63!3.27!THRB;;chr4:149363475..149363492,-!p2@NR3C2!0.63!3.27!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.63!3.27!HOPX;;chr10:114710430..114710470,+!p30@TCF7L2!0.63!3.27!TCF7L2;;chr5:142783175..142783297,-!p1@NR3C1!0.62!52.27!NR3C1;;chr19:11959532..11959593,+!p1@ZNF439!0.62!14.25!ZNF439;;chr15:67418047..67418093,+!p4@SMAD3!0.62!4.16!SMAD3;;chr18:22932080..22932170,-!p1@ZNF521!0.61!15.44!ZNF521;;chr1:41174988..41175047,+!p4@NFYC!0.61!9.21!NFYC;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.05!ZNF702P;;chrX:107018969..107019024,-!p6@TSC22D3!0.60!4.45!TSC22D3;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.86!MEIS1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.60!2.97!LRRFIP1;;chr1:32930647..32930684,+!p1@ZBTB8B,p4@ZBTB8A!0.60!2.97!ZBTB8B;;chr6:28048343..28048354,+!p1@ZNF165!0.60!2.97!ZNF165;;chr11:65554528..65554546,+!p1@OVOL1!0.60!2.97!OVOL1;;chr22:41777927..41777971,+!p1@TEF!0.59!29.40!TEF;;chr3:71630690..71630750,-!p11@FOXP1!0.59!5.35!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.59!4.45!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!0.59!4.16!EPAS1;;chrX:128657457..128657475,-!p1@SMARCA1!0.58!39.50!SMARCA1;;chr19:12146483..12146546,-!p1@ZNF433!0.58!12.18!ZNF433;;chr9:99180597..99180614,-!p3@ZNF367!0.58!3.27!ZNF367;;chr19:926001..926046,+!p1@ARID3A!0.57!11.28!ARID3A;;chr2:46612334..46612349,+!p6@EPAS1!0.57!3.86!EPAS1;;chr6:35465058..35465077,-!p2@TEAD3!0.57!2.97!TEAD3;;chr6:35464817..35464894,-!p1@TEAD3!0.56!50.48!TEAD3;;chr5:178322893..178322931,+!p1@ZFP2!0.56!4.16!ZFP2;;chr7:15726296..15726315,-!p1@MEOX2!0.56!2.67!MEOX2;;chr7:50343634..50343717,+!p2@IKZF1!0.56!2.67!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!0.56!2.67!SPI1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.56!2.67!HOXC5;;chr13:72441074..72441172,-!p2@DACH1!0.56!2.67!DACH1;;chr19:22966925..22966958,-!p1@ZNF99!0.56!2.67!ZNF99;;chr2:114036488..114036504,-!p1@PAX8!0.56!2.67!PAX8;;chr1:244214577..244214593,+!p1@ZNF238!0.56!2.67!ZNF238;;chr3:128206762..128206781,-!p2@GATA2!0.55!19.90!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.55!17.52!ARID5B;;chr13:74708504..74708549,-!p1@KLF12!0.55!14.25!KLF12;;chr6:108881012..108881034,+!p3@FOXO3!0.55!10.99!FOXO3;;chr17:38465441..38465481,+!p6@RARA!0.55!3.27!RARA;;chr6:168227552..168227609,+!p1@MLLT4!0.54!25.24!MLLT4;;chr19:58220517..58220583,-!p1@ZNF154!0.54!9.50!ZNF154;;chr20:45142154..45142227,-!p1@ZNF334!0.54!5.64!ZNF334;;chr3:170075103..170075114,+!p5@SKIL!0.54!3.56!SKIL;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.97!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.73!PPP1R13L;;chr9:137217986..137218049,+!p3@RXRA!0.53!8.32!RXRA;;chr18:42260059..42260132,+!p1@SETBP1!0.53!4.45!SETBP1;;chr19:37464453..37464515,+!p4@ZNF568!0.53!2.38!ZNF568;;chr1:209979411..209979433,-!p2@IRF6!0.53!2.38!IRF6;;chr5:138643069..138643082,+!p13@MATR3!0.53!2.38!MATR3;;chr7:27142290..27142310,-!p1@HOXA2!0.53!2.38!HOXA2;;chr7:31380292..31380351,-!p1@NEUROD6!0.53!2.38!NEUROD6;;chr10:131762504..131762555,-!p1@EBF3!0.53!2.38!EBF3;;chr10:8097357..8097368,+!p15@GATA3!0.53!2.38!GATA3;;chr11:85393886..85393913,-!p3@CREBZF!0.53!2.38!CREBZF;;chrX:56258885..56258896,+!p5@KLF8!0.53!2.38!KLF8;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| |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.62!411.89!HAND1;;chr2:19558373..19558392,-!p1@OSR1!1.91!212.92!OSR1;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.43!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.85!69.19!ZBED2;;chr8:102504651..102504683,+!p1@GRHL2!1.82!65.63!GRHL2;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.67!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.62!40.39!PEG3;;chr2:46524897..46524911,+!p2@EPAS1!1.61!108.10!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.54!42.76!TFAP2C;;chr4:188916918..188916942,+!p1@ZFP42!1.53!33.26!ZFP42;;chr1:209979467..209979494,-!p1@IRF6!1.50!34.45!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.45!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.46!27.91!ELF3;;chr10:48355030..48355090,+!p1@ZNF488!1.44!33.85!ZNF488;;chr8:102504690..102504704,+!p3@GRHL2!1.42!25.54!GRHL2;;chr5:153857800..153857812,-!p2@HAND1!1.41!24.65!HAND1;;chr8:102504979..102505010,+!p2@GRHL2!1.41!24.65!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.98!IRX2;;chr11:120110863..120110908,+!p2@POU2F3!1.35!21.38!POU2F3;;chr4:174450089..174450153,-!p2@HAND2!1.34!20.79!HAND2;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.26!TFAP2A;;chr1:38512457..38512474,-!p1@POU3F1!1.33!22.27!POU3F1;;chr5:3595934..3595957,+!p2@IRX1!1.25!16.63!IRX1;;chr4:174451370..174451387,-!p1@HAND2!1.23!16.04!HAND2;;chr5:174151612..174151633,+!p2@MSX2!1.20!14.85!MSX2;;chr3:111314230..111314241,-!p2@ZBED2!1.19!14.55!ZBED2;;chr5:174151553..174151610,+!p1@MSX2!1.17!23.16!MSX2;;chr6:126240356..126240379,+!p7@NCOA7!1.17!16.93!NCOA7;;chrY:2803415..2803468,+!p1@ZFY!1.17!13.66!ZFY;;chr19:17356189..17356221,-!p2@NR2F6!1.16!21.98!NR2F6;;chr11:120110844..120110861,+!p3@POU2F3!1.16!13.36!POU2F3;;chr2:46612891..46612907,+!p10@EPAS1!1.15!13.07!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.14!12.77!TFAP2A;;chr1:201979703..201979721,+!p2@ELF3!1.14!12.77!ELF3;;chr3:24536253..24536328,-!p1@THRB!1.13!23.76!THRB;;chr10:8100691..8100732,+!p5@GATA3!1.12!12.18!GATA3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.07!10.69!LRRFIP1;;chr3:24536485..24536500,-!p3@THRB!1.05!10.10!THRB;;chr2:46524878..46524891,+!p3@EPAS1!1.03!17.22!EPAS1;;chr2:68592406..68592424,+!p1@PLEK!1.03!9.80!PLEK;;chrY:21906594..21906622,-!p1@KDM5D!1.03!9.80!KDM5D;;chr6:10419768..10419819,-!p6@TFAP2A!1.03!9.80!TFAP2A;;chr2:46524537..46524553,+!p1@EPAS1!1.02!950.88!EPAS1;;chr6:19837592..19837621,+!p1@ID4!1.01!57.91!ID4;;chr5:2751785..2751808,-!p2@IRX2!1.01!9.21!IRX2;;chr1:164528410..164528428,+!p1@PBX1!1.00!69.79!PBX1;;chr6:126240380..126240430,+!p2@NCOA7!1.00!23.76!NCOA7;;chr20:18038521..18038571,-!p1@OVOL2!1.00!8.91!OVOL2;;chr5:3595977..3595999,+!p1@IRX1!0.97!8.32!IRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.96!172.24!SNAI2;;chr10:8095593..8095625,+!p3@GATA3!0.96!9.50!GATA3;;chr5:153857819..153857824,-!p3@HAND1!0.96!8.02!HAND1;;chr16:29818199..29818216,+!p11@MAZ!0.95!13.07!MAZ;;chr8:102504932..102504952,+!p4@GRHL2!0.93!7.42!GRHL2;;chr12:53625966..53626012,-!p2@RARG!0.91!19.30!RARG;;chr9:99180617..99180658,-!p1@ZNF367!0.91!16.04!ZNF367;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.13!IRF8;;chrX:56258844..56258882,+!p1@KLF8!0.90!9.80!KLF8;;chr19:22193731..22193751,-!p1@ZNF208!0.89!6.83!ZNF208;;chr5:3595961..3595975,+!p3@IRX1!0.89!6.83!IRX1;;chr10:8097321..8097348,+!p4@GATA3!0.89!6.83!GATA3;;chr8:49833948..49833973,-!p2@SNAI2!0.88!43.65!SNAI2;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.53!YBX2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.88!6.53!ZNF676;;chr11:47400078..47400106,-!p1@SPI1!0.88!6.53!SPI1;;chr14:75988771..75988826,+!p1@BATF!0.87!8.61!BATF;;chr12:54778471..54778528,-!p1@ZNF385A!0.86!6.24!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!0.85!11.28!NR4A3;;chr9:99180662..99180690,-!p2@ZNF367!0.85!8.61!ZNF367;;chr20:32274179..32274213,-!p1@E2F1!0.84!41.58!E2F1;;chr6:85474299..85474324,-!p1@TBX18!0.84!10.99!TBX18;;chr15:96874927..96874938,+!p8@NR2F2!0.83!13.07!NR2F2;;chr20:2673383..2673441,+!p1@EBF4!0.83!9.50!EBF4;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.64!SOX11;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.02!ZNF860;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.83!TBX18;;chr9:110250697..110250738,-!p2@KLF4!0.81!6.53!KLF4;;chr2:46524865..46524870,+!p9@EPAS1!0.80!6.24!EPAS1;;chr12:81101472..81101483,+!p2@MYF6!0.80!5.35!MYF6;;chr6:10412576..10412599,-!p5@TFAP2A!0.80!5.35!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.79!59.99!KLF5;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr6:10413188..10413249,-!p7@TFAP2A!0.78!5.05!TFAP2A;;chr4:299227..299272,-!p1@ZNF732!0.78!5.05!ZNF732;;chr15:60884706..60884743,-!p1@RORA!0.77!27.91!RORA;;chr19:33793430..33793447,-!p1@CEBPA!0.77!22.57!CEBPA;;chr4:149363494..149363543,-!p1@NR3C2!0.76!4.75!NR3C2;;chr6:10419824..10419840,-!p9@TFAP2A!0.76!4.75!TFAP2A;;chr13:45048432..45048452,-!p29@TSC22D1!0.76!4.75!TSC22D1;;chr16:29817841..29817865,+!p1@MAZ!0.75!109.88!MAZ;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.99!MAFB;;chr14:29235961..29236008,+!p1@FOXG1!0.74!4.45!FOXG1;;chr13:45010939..45011033,-!p1@TSC22D1!0.73!324.29!TSC22D1;;chr1:164528445..164528459,+!p2@PBX1!0.73!14.85!PBX1;;chr19:22235279..22235301,+!p1@ZNF257!0.72!8.61!ZNF257;;chr15:96869511..96869525,+!p16@NR2F2!0.72!4.75!NR2F2;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.25!PBX1;;chr20:32274150..32274166,-!p2@E2F1!0.71!8.32!E2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.71!8.02!NR2F2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.71!4.16!SMARCE1;;chrX:56258900..56258917,+!p4@KLF8!0.71!4.16!KLF8;;chr19:49140609..49140643,-!p1@DBP!0.70!25.24!DBP;;chr12:80084737..80084763,-!p3@PAWR!0.70!16.63!PAWR;;chr2:46602879..46602899,+!p8@EPAS1!0.70!5.05!EPAS1;;chr3:170075124..170075136,+!p4@SKIL!0.69!5.64!SKIL;;chr2:10091815..10091864,+!p1@GRHL1!0.69!5.35!GRHL1;;chr2:16080659..16080685,+!p1@MYCN!0.69!3.86!MYCN;;chr17:7493405..7493419,-!p1@SOX15!0.69!3.86!SOX15;;chr7:1577899..1577943,+!p3@MAFK!0.69!3.86!MAFK;;chr9:110252035..110252057,-!p1@KLF4!0.68!69.49!KLF4;;chr17:53342311..53342400,+!p1@HLF!0.68!4.45!HLF;;chr19:45971246..45971265,+!p1@FOSB!0.67!79.59!FOSB;;chr11:2292226..2292270,-!p1@ASCL2!0.66!3.56!ASCL2;;chr14:33403881..33403924,+!p1@NPAS3!0.66!3.56!NPAS3;;chr7:63505799..63505904,+!p1@ZNF727!0.66!3.56!ZNF727;;chr22:21771656..21771662,+!p1@HIC2!0.66!3.56!HIC2;;chr12:80084303..80084332,-!p1@PAWR!0.65!23.46!PAWR;;chr2:238600933..238600985,+!p3@LRRFIP1!0.65!21.98!LRRFIP1;;chr19:36391434..36391450,-!p1@NFKBID!0.65!7.42!NFKBID;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.64!4.75!ZNF700;;chr18:6414884..6414942,-!p1@L3MBTL4!0.64!4.45!L3MBTL4;;chr6:126240442..126240459,+!p4@NCOA7!0.64!4.45!NCOA7;;chr8:57123815..57123867,-!p1@PLAG1!0.63!15.44!PLAG1;;chr8:102217679..102217719,-!p2@ZNF706!0.63!13.07!ZNF706;;chr17:38256799..38256815,-!p3@NR1D1!0.63!6.53!NR1D1;;chr2:214015343..214015366,-!p3@IKZF2!0.63!3.27!IKZF2;;chr2:5832493..5832507,+!p2@SOX11!0.63!3.27!SOX11;;chr3:24536231..24536249,-!p4@THRB!0.63!3.27!THRB;;chr3:24536332..24536358,-!p2@THRB!0.63!3.27!THRB;;chr4:149363475..149363492,-!p2@NR3C2!0.63!3.27!NR3C2;;chr4:57522598..57522664,-!p3@HOPX!0.63!3.27!HOPX;;chr10:114710430..114710470,+!p30@TCF7L2!0.63!3.27!TCF7L2;;chr5:142783175..142783297,-!p1@NR3C1!0.62!52.27!NR3C1;;chr19:11959532..11959593,+!p1@ZNF439!0.62!14.25!ZNF439;;chr15:67418047..67418093,+!p4@SMAD3!0.62!4.16!SMAD3;;chr18:22932080..22932170,-!p1@ZNF521!0.61!15.44!ZNF521;;chr1:41174988..41175047,+!p4@NFYC!0.61!9.21!NFYC;;chr19:53496768..53496799,-!p1@ZNF702P!0.60!5.05!ZNF702P;;chrX:107018969..107019024,-!p6@TSC22D3!0.60!4.45!TSC22D3;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.86!MEIS1;;chr2:238600998..238601013,+!p5@LRRFIP1!0.60!2.97!LRRFIP1;;chr1:32930647..32930684,+!p1@ZBTB8B,p4@ZBTB8A!0.60!2.97!ZBTB8B;;chr6:28048343..28048354,+!p1@ZNF165!0.60!2.97!ZNF165;;chr11:65554528..65554546,+!p1@OVOL1!0.60!2.97!OVOL1;;chr22:41777927..41777971,+!p1@TEF!0.59!29.40!TEF;;chr3:71630690..71630750,-!p11@FOXP1!0.59!5.35!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.59!4.45!NR2F2;;chr2:46602901..46602926,+!p7@EPAS1!0.59!4.16!EPAS1;;chrX:128657457..128657475,-!p1@SMARCA1!0.58!39.50!SMARCA1;;chr19:12146483..12146546,-!p1@ZNF433!0.58!12.18!ZNF433;;chr9:99180597..99180614,-!p3@ZNF367!0.58!3.27!ZNF367;;chr19:926001..926046,+!p1@ARID3A!0.57!11.28!ARID3A;;chr2:46612334..46612349,+!p6@EPAS1!0.57!3.86!EPAS1;;chr6:35465058..35465077,-!p2@TEAD3!0.57!2.97!TEAD3;;chr6:35464817..35464894,-!p1@TEAD3!0.56!50.48!TEAD3;;chr5:178322893..178322931,+!p1@ZFP2!0.56!4.16!ZFP2;;chr7:15726296..15726315,-!p1@MEOX2!0.56!2.67!MEOX2;;chr7:50343634..50343717,+!p2@IKZF1!0.56!2.67!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!0.56!2.67!SPI1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.56!2.67!HOXC5;;chr13:72441074..72441172,-!p2@DACH1!0.56!2.67!DACH1;;chr19:22966925..22966958,-!p1@ZNF99!0.56!2.67!ZNF99;;chr2:114036488..114036504,-!p1@PAX8!0.56!2.67!PAX8;;chr1:244214577..244214593,+!p1@ZNF238!0.56!2.67!ZNF238;;chr3:128206762..128206781,-!p2@GATA2!0.55!19.90!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.55!17.52!ARID5B;;chr13:74708504..74708549,-!p1@KLF12!0.55!14.25!KLF12;;chr6:108881012..108881034,+!p3@FOXO3!0.55!10.99!FOXO3;;chr17:38465441..38465481,+!p6@RARA!0.55!3.27!RARA;;chr6:168227552..168227609,+!p1@MLLT4!0.54!25.24!MLLT4;;chr19:58220517..58220583,-!p1@ZNF154!0.54!9.50!ZNF154;;chr20:45142154..45142227,-!p1@ZNF334!0.54!5.64!ZNF334;;chr3:170075103..170075114,+!p5@SKIL!0.54!3.56!SKIL;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.97!TFAP2A;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.73!PPP1R13L;;chr9:137217986..137218049,+!p3@RXRA!0.53!8.32!RXRA;;chr18:42260059..42260132,+!p1@SETBP1!0.53!4.45!SETBP1;;chr19:37464453..37464515,+!p4@ZNF568!0.53!2.38!ZNF568;;chr1:209979411..209979433,-!p2@IRF6!0.53!2.38!IRF6;;chr5:138643069..138643082,+!p13@MATR3!0.53!2.38!MATR3;;chr7:27142290..27142310,-!p1@HOXA2!0.53!2.38!HOXA2;;chr7:31380292..31380351,-!p1@NEUROD6!0.53!2.38!NEUROD6;;chr10:131762504..131762555,-!p1@EBF3!0.53!2.38!EBF3;;chr10:8097357..8097368,+!p15@GATA3!0.53!2.38!GATA3;;chr11:85393886..85393913,-!p3@CREBZF!0.53!2.38!CREBZF;;chrX:56258885..56258896,+!p5@KLF8!0.53!2.38!KLF8;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002537;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/amniotic%2520membrane%2520cells%252c%2520donor2.CNhs12503.12236-129G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12236-129G4 | |id=FF:12236-129G4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000010 | ||
|is_obsolete= | |||
|library_id=CNhs12503 | |||
|library_id_phase_based=2:CNhs12503 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12236 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12236 | |||
|name=amniotic membrane cells, donor2 | |name=amniotic membrane cells, donor2 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12503,LSID918,release012,COMPLETED | |profile_hcage=CNhs12503,LSID918,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0421510407260616,0.11292814946238,0.0626571426621743,-0.112393923149098,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123344183199025,0,0,0,0,0,-0.0979578962680575,0,0,-0.0200284403164819,0,0,0,0,0,0,0,0,0,0,0.11292814946238,0,0.0488979545389037,0,0,0,0,0,0,0,0,0.178254049699614,0,0,0,0,0,0,0,0.105476709569843,0,0.11292814946238,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.528366088282007,0,0,0.11292814946238,0,0,0,0,0,0,0,0,0,0.000950751479320777,0,0.05646407473119,0,0,-0.0185592481759963,-0.154733327964679,0.05646407473119,0,0,0.11292814946238,0.104433719574741,-0.082013126069705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0399095191912707,0,0,0,0.0786605158521442,0.0500232168050857,0,0,0,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=4.86972 | |rna_weight_ug=4.86972 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.15748936672399e-246!GO:0043226;organelle;2.33704211293734e-200!GO:0043229;intracellular organelle;8.09079265402862e-200!GO:0043231;intracellular membrane-bound organelle;1.78393754133814e-194!GO:0043227;membrane-bound organelle;1.78393754133814e-194!GO:0005737;cytoplasm;1.39737460883111e-179!GO:0044422;organelle part;3.42464327406296e-137!GO:0044446;intracellular organelle part;3.2983713857889e-135!GO:0044444;cytoplasmic part;2.34334388179253e-121!GO:0032991;macromolecular complex;1.80610004848459e-99!GO:0005515;protein binding;5.30803047351445e-90!GO:0043170;macromolecule metabolic process;1.16123953636755e-85!GO:0005634;nucleus;2.5848363440919e-85!GO:0044238;primary metabolic process;7.83128152950548e-81!GO:0044237;cellular metabolic process;4.80230979939949e-79!GO:0030529;ribonucleoprotein complex;5.35090686211496e-75!GO:0044428;nuclear part;4.37972697797159e-65!GO:0003723;RNA binding;4.37972697797159e-65!GO:0043233;organelle lumen;4.57003762740036e-62!GO:0031974;membrane-enclosed lumen;4.57003762740036e-62!GO:0043234;protein complex;3.58971804763069e-54!GO:0043283;biopolymer metabolic process;1.63282304564582e-52!GO:0005739;mitochondrion;1.75052305490106e-52!GO:0016043;cellular component organization and biogenesis;2.22908087197074e-51!GO:0019538;protein metabolic process;1.95086187771076e-50!GO:0033036;macromolecule localization;5.47409224197772e-49!GO:0015031;protein transport;5.29054734721228e-48!GO:0045184;establishment of protein localization;4.52636260074597e-46!GO:0008104;protein localization;5.95694361064519e-46!GO:0005840;ribosome;9.38616728051905e-46!GO:0006412;translation;3.11786521212518e-45!GO:0044267;cellular protein metabolic process;1.23955720849871e-43!GO:0044260;cellular macromolecule metabolic process;1.2540848351767e-43!GO:0031090;organelle membrane;7.34066442701113e-43!GO:0010467;gene expression;1.84063742208361e-42!GO:0003735;structural constituent of ribosome;1.66912885903714e-40!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.12218368763109e-40!GO:0043228;non-membrane-bound organelle;3.64278272819307e-39!GO:0043232;intracellular non-membrane-bound organelle;3.64278272819307e-39!GO:0006396;RNA processing;2.05950073310269e-38!GO:0031981;nuclear lumen;5.63053320065367e-37!GO:0033279;ribosomal subunit;1.15181500737476e-36!GO:0065003;macromolecular complex assembly;1.39226004238743e-36!GO:0005829;cytosol;7.17074680534387e-36!GO:0016071;mRNA metabolic process;1.41003620677053e-35!GO:0044429;mitochondrial part;2.89773424493855e-35!GO:0022607;cellular component assembly;7.92596323226944e-35!GO:0031967;organelle envelope;3.5323494872829e-34!GO:0031975;envelope;6.91016106385171e-34!GO:0006996;organelle organization and biogenesis;7.64753095657311e-34!GO:0009059;macromolecule biosynthetic process;1.16295208806927e-33!GO:0046907;intracellular transport;1.31283133629924e-33!GO:0008380;RNA splicing;1.97920956613017e-33!GO:0006259;DNA metabolic process;9.18424975311609e-32!GO:0006397;mRNA processing;4.63867537194833e-31!GO:0006886;intracellular protein transport;1.06092939503015e-30!GO:0007049;cell cycle;1.00247087503732e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.12403321627619e-27!GO:0009058;biosynthetic process;3.46586506749666e-26!GO:0003676;nucleic acid binding;6.27224654043274e-26!GO:0044249;cellular biosynthetic process;1.70587351278791e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.40726660077906e-25!GO:0005654;nucleoplasm;2.38442117729793e-24!GO:0051649;establishment of cellular localization;1.23786208064604e-23!GO:0051641;cellular localization;1.36368528277528e-23!GO:0005681;spliceosome;1.92930031102552e-23!GO:0044445;cytosolic part;1.27150795081925e-22!GO:0005740;mitochondrial envelope;2.10345923757034e-22!GO:0019866;organelle inner membrane;2.59066452308536e-22!GO:0022402;cell cycle process;2.60606554524327e-21!GO:0031966;mitochondrial membrane;3.4496652609975e-21!GO:0006119;oxidative phosphorylation;4.5783507167117e-21!GO:0005743;mitochondrial inner membrane;2.88483105041123e-20!GO:0008134;transcription factor binding;6.48301042942578e-20!GO:0015935;small ribosomal subunit;8.59085247226749e-20!GO:0016070;RNA metabolic process;9.13983966255336e-20!GO:0044451;nucleoplasm part;1.18628749978383e-19!GO:0044455;mitochondrial membrane part;9.48676680215498e-19!GO:0000278;mitotic cell cycle;1.16254967153327e-18!GO:0006457;protein folding;1.50827768950668e-18!GO:0022618;protein-RNA complex assembly;3.49712680761768e-18!GO:0005694;chromosome;4.97388677612063e-18!GO:0015934;large ribosomal subunit;6.34788346170359e-18!GO:0048770;pigment granule;7.01305724884041e-18!GO:0042470;melanosome;7.01305724884041e-18!GO:0012505;endomembrane system;8.72081895046049e-18!GO:0006512;ubiquitin cycle;1.07944926984228e-17!GO:0044427;chromosomal part;4.00318287232393e-17!GO:0005746;mitochondrial respiratory chain;7.14285024072991e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.90837995041382e-17!GO:0051276;chromosome organization and biogenesis;1.0376700084026e-16!GO:0005783;endoplasmic reticulum;1.71043297039385e-16!GO:0019941;modification-dependent protein catabolic process;1.79313028921659e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.79313028921659e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.11188529004563e-16!GO:0044257;cellular protein catabolic process;2.2445582268438e-16!GO:0016462;pyrophosphatase activity;2.26827878386559e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.81358412412262e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;3.50961847115069e-16!GO:0006974;response to DNA damage stimulus;4.95766792514574e-16!GO:0044265;cellular macromolecule catabolic process;9.82375706563248e-16!GO:0043412;biopolymer modification;9.82375706563248e-16!GO:0022403;cell cycle phase;1.10745473077373e-15!GO:0005794;Golgi apparatus;1.16117988418759e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.16117988418759e-15!GO:0043285;biopolymer catabolic process;1.16117988418759e-15!GO:0016874;ligase activity;1.24078098177564e-15!GO:0031980;mitochondrial lumen;1.94235863319376e-15!GO:0005759;mitochondrial matrix;1.94235863319376e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.24416823214439e-15!GO:0017111;nucleoside-triphosphatase activity;2.92028929007624e-15!GO:0000166;nucleotide binding;4.42637864716136e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.55161716585215e-15!GO:0006605;protein targeting;6.72164063859174e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.81638855321326e-15!GO:0003954;NADH dehydrogenase activity;6.81638855321326e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.81638855321326e-15!GO:0016192;vesicle-mediated transport;8.3719770768748e-15!GO:0006464;protein modification process;1.02753119244119e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.22068047520378e-14!GO:0030163;protein catabolic process;1.64159181944099e-14!GO:0006323;DNA packaging;6.0928519767561e-14!GO:0008135;translation factor activity, nucleic acid binding;1.06402205672331e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.95770836011884e-13!GO:0048193;Golgi vesicle transport;1.95770836011884e-13!GO:0009057;macromolecule catabolic process;2.27533706093563e-13!GO:0006281;DNA repair;2.82970618287076e-13!GO:0050794;regulation of cellular process;3.79264481315242e-13!GO:0043687;post-translational protein modification;4.9187499571956e-13!GO:0007067;mitosis;4.92719825564792e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.21895294917478e-13!GO:0042773;ATP synthesis coupled electron transport;5.21895294917478e-13!GO:0000087;M phase of mitotic cell cycle;5.77940753304707e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.71115980193263e-13!GO:0045271;respiratory chain complex I;6.71115980193263e-13!GO:0005747;mitochondrial respiratory chain complex I;6.71115980193263e-13!GO:0005761;mitochondrial ribosome;7.18257206201775e-13!GO:0000313;organellar ribosome;7.18257206201775e-13!GO:0051301;cell division;7.18257206201775e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.77519985014736e-13!GO:0051082;unfolded protein binding;8.00586246377408e-13!GO:0044432;endoplasmic reticulum part;8.06356939476127e-13!GO:0012501;programmed cell death;9.06905357674685e-13!GO:0005730;nucleolus;1.09099251194796e-12!GO:0006915;apoptosis;1.18314841080684e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.18499209452753e-12!GO:0006333;chromatin assembly or disassembly;2.77067976849622e-12!GO:0005635;nuclear envelope;3.55588868710029e-12!GO:0003712;transcription cofactor activity;3.77653867658983e-12!GO:0000074;regulation of progression through cell cycle;4.0818397556125e-12!GO:0006260;DNA replication;4.33796660596162e-12!GO:0008219;cell death;5.14195610231182e-12!GO:0016265;death;5.14195610231182e-12!GO:0051726;regulation of cell cycle;5.14233559751247e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;6.91253237611574e-12!GO:0000375;RNA splicing, via transesterification reactions;6.91253237611574e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.91253237611574e-12!GO:0009719;response to endogenous stimulus;8.96372452659866e-12!GO:0006366;transcription from RNA polymerase II promoter;9.16772433411881e-12!GO:0006413;translational initiation;1.37262155611586e-11!GO:0003743;translation initiation factor activity;2.25421853193991e-11!GO:0000279;M phase;2.29945418226466e-11!GO:0000785;chromatin;2.67978950961131e-11!GO:0006913;nucleocytoplasmic transport;2.96512434504989e-11!GO:0031965;nuclear membrane;3.84372645857834e-11!GO:0016604;nuclear body;4.37144443823727e-11!GO:0006461;protein complex assembly;5.50024189648222e-11!GO:0008639;small protein conjugating enzyme activity;5.77409671989357e-11!GO:0065004;protein-DNA complex assembly;6.28380303460931e-11!GO:0051169;nuclear transport;6.28965335376469e-11!GO:0044248;cellular catabolic process;6.53945571568896e-11!GO:0019787;small conjugating protein ligase activity;7.19847624342155e-11!GO:0032553;ribonucleotide binding;7.7411743901514e-11!GO:0032555;purine ribonucleotide binding;7.7411743901514e-11!GO:0004842;ubiquitin-protein ligase activity;1.20319032044515e-10!GO:0006446;regulation of translational initiation;1.49915199776707e-10!GO:0005793;ER-Golgi intermediate compartment;1.83539290038519e-10!GO:0008565;protein transporter activity;1.99012986100066e-10!GO:0048523;negative regulation of cellular process;2.83832858862102e-10!GO:0051186;cofactor metabolic process;4.66058194385155e-10!GO:0006334;nucleosome assembly;6.12578598657215e-10!GO:0005773;vacuole;7.06130760124057e-10!GO:0050789;regulation of biological process;9.84231091478829e-10!GO:0044453;nuclear membrane part;1.27462862789685e-09!GO:0005524;ATP binding;1.55285740829856e-09!GO:0017076;purine nucleotide binding;1.71065063629236e-09!GO:0016607;nuclear speck;2.04784074000024e-09!GO:0031497;chromatin assembly;2.08837891929174e-09!GO:0051246;regulation of protein metabolic process;3.9156296885402e-09!GO:0005768;endosome;4.57727184976677e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.69313838995513e-09!GO:0032559;adenyl ribonucleotide binding;4.75273823593422e-09!GO:0016881;acid-amino acid ligase activity;5.02390471539451e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.18662438821602e-09!GO:0017038;protein import;6.96848577928321e-09!GO:0000323;lytic vacuole;7.9415328546351e-09!GO:0005764;lysosome;7.9415328546351e-09!GO:0030120;vesicle coat;1.47999410963842e-08!GO:0030662;coated vesicle membrane;1.47999410963842e-08!GO:0048519;negative regulation of biological process;1.53569218561996e-08!GO:0048475;coated membrane;1.7272925364075e-08!GO:0030117;membrane coat;1.7272925364075e-08!GO:0042254;ribosome biogenesis and assembly;2.30846924066871e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.64025382344443e-08!GO:0042623;ATPase activity, coupled;2.64025382344443e-08!GO:0005788;endoplasmic reticulum lumen;2.64686452870272e-08!GO:0016887;ATPase activity;3.25269048942679e-08!GO:0009060;aerobic respiration;3.53758848455187e-08!GO:0004386;helicase activity;3.64825170645356e-08!GO:0019222;regulation of metabolic process;3.96740010772661e-08!GO:0031324;negative regulation of cellular metabolic process;4.11074054975841e-08!GO:0005643;nuclear pore;4.3340461173698e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.7378557326451e-08!GO:0003697;single-stranded DNA binding;6.50826558997159e-08!GO:0006793;phosphorus metabolic process;7.54488918570238e-08!GO:0006796;phosphate metabolic process;7.54488918570238e-08!GO:0045333;cellular respiration;8.63139585688416e-08!GO:0005789;endoplasmic reticulum membrane;1.02605578709432e-07!GO:0043566;structure-specific DNA binding;1.02973076513011e-07!GO:0009055;electron carrier activity;1.07233740740017e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.19721747654929e-07!GO:0030554;adenyl nucleotide binding;1.24506485428126e-07!GO:0009892;negative regulation of metabolic process;1.30096836677121e-07!GO:0019829;cation-transporting ATPase activity;1.30965098105631e-07!GO:0032446;protein modification by small protein conjugation;1.45994225135401e-07!GO:0009259;ribonucleotide metabolic process;1.68085382719198e-07!GO:0015986;ATP synthesis coupled proton transport;1.69271635118388e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.69271635118388e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.86186001443938e-07!GO:0006732;coenzyme metabolic process;1.93790528695053e-07!GO:0016568;chromatin modification;1.98527876380066e-07!GO:0043623;cellular protein complex assembly;2.46285897237329e-07!GO:0016567;protein ubiquitination;2.68078258938487e-07!GO:0050657;nucleic acid transport;2.88181493460138e-07!GO:0051236;establishment of RNA localization;2.88181493460138e-07!GO:0050658;RNA transport;2.88181493460138e-07!GO:0051325;interphase;3.459273858795e-07!GO:0065002;intracellular protein transport across a membrane;3.82825089642572e-07!GO:0003713;transcription coactivator activity;4.91043922077083e-07!GO:0006403;RNA localization;5.2753808646943e-07!GO:0051329;interphase of mitotic cell cycle;5.29757449390503e-07!GO:0009260;ribonucleotide biosynthetic process;5.66719489154152e-07!GO:0016564;transcription repressor activity;5.91870676600994e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.03716621225331e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.46475660571361e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.78111950295629e-07!GO:0006163;purine nucleotide metabolic process;7.05074555254341e-07!GO:0016310;phosphorylation;7.97307700097354e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.9955656986824e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.08633472423249e-07!GO:0009150;purine ribonucleotide metabolic process;8.0981167331381e-07!GO:0051170;nuclear import;9.0511986987114e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.47603241557804e-07!GO:0006164;purine nucleotide biosynthetic process;1.03558246487937e-06!GO:0031988;membrane-bound vesicle;1.10438789695574e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.12473472580193e-06!GO:0042981;regulation of apoptosis;1.13670008591945e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.34630093860287e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.34630093860287e-06!GO:0006099;tricarboxylic acid cycle;1.34630093860287e-06!GO:0046356;acetyl-CoA catabolic process;1.34630093860287e-06!GO:0008026;ATP-dependent helicase activity;1.45067196546782e-06!GO:0015630;microtubule cytoskeleton;1.51754053311804e-06!GO:0043067;regulation of programmed cell death;1.67395026149969e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.68344160818009e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.68344160818009e-06!GO:0006606;protein import into nucleus;1.74685471037901e-06!GO:0016481;negative regulation of transcription;1.86598620365705e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.87444738116508e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.88357241114907e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.89689847602979e-06!GO:0000151;ubiquitin ligase complex;1.94629405470832e-06!GO:0046930;pore complex;2.17334833673784e-06!GO:0045786;negative regulation of progression through cell cycle;2.17843147622086e-06!GO:0009141;nucleoside triphosphate metabolic process;2.498511855151e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.64126766254816e-06!GO:0009056;catabolic process;2.75601465619949e-06!GO:0007005;mitochondrion organization and biogenesis;2.84321845994898e-06!GO:0031982;vesicle;3.21637867962173e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.35820510211466e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.35820510211466e-06!GO:0006754;ATP biosynthetic process;3.84526165548147e-06!GO:0006753;nucleoside phosphate metabolic process;3.84526165548147e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.94618486453473e-06!GO:0000786;nucleosome;3.97468918952991e-06!GO:0003924;GTPase activity;3.97468918952991e-06!GO:0044431;Golgi apparatus part;4.22659809035868e-06!GO:0000245;spliceosome assembly;4.22737124368065e-06!GO:0006084;acetyl-CoA metabolic process;4.63942178155827e-06!GO:0031252;leading edge;6.37614380621988e-06!GO:0005798;Golgi-associated vesicle;6.59195784170603e-06!GO:0004298;threonine endopeptidase activity;6.68236168333205e-06!GO:0043069;negative regulation of programmed cell death;7.00686177611854e-06!GO:0030036;actin cytoskeleton organization and biogenesis;7.15040618901201e-06!GO:0006916;anti-apoptosis;7.20203636456846e-06!GO:0043066;negative regulation of apoptosis;8.00740284364637e-06!GO:0031410;cytoplasmic vesicle;8.03293056612825e-06!GO:0003714;transcription corepressor activity;8.38753999011385e-06!GO:0045259;proton-transporting ATP synthase complex;8.3965307444171e-06!GO:0042802;identical protein binding;9.0075453765807e-06!GO:0005770;late endosome;9.57477234478657e-06!GO:0005819;spindle;1.02580333282803e-05!GO:0006613;cotranslational protein targeting to membrane;1.02652592977914e-05!GO:0046034;ATP metabolic process;1.07094976754537e-05!GO:0051028;mRNA transport;1.20164349405545e-05!GO:0048522;positive regulation of cellular process;1.26322857996734e-05!GO:0016563;transcription activator activity;1.30773740201082e-05!GO:0006399;tRNA metabolic process;1.33541527755969e-05!GO:0016859;cis-trans isomerase activity;1.35575167044196e-05!GO:0019899;enzyme binding;1.35867212565394e-05!GO:0031323;regulation of cellular metabolic process;1.38206156963665e-05!GO:0006364;rRNA processing;1.3826770867872e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.40293607632985e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.5548638723962e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.59270972328058e-05!GO:0000775;chromosome, pericentric region;1.61054735315783e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.80615277862946e-05!GO:0016072;rRNA metabolic process;2.13178583920854e-05!GO:0008092;cytoskeletal protein binding;2.32258896886887e-05!GO:0044440;endosomal part;2.32258896886887e-05!GO:0010008;endosome membrane;2.32258896886887e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.47593075025925e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.47593075025925e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.47593075025925e-05!GO:0051427;hormone receptor binding;2.80942705313234e-05!GO:0005667;transcription factor complex;2.81815428325659e-05!GO:0007243;protein kinase cascade;2.84112475367243e-05!GO:0009109;coenzyme catabolic process;2.87534656821152e-05!GO:0005813;centrosome;3.20594221554403e-05!GO:0065007;biological regulation;3.54748013360523e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;3.68672653233552e-05!GO:0043038;amino acid activation;3.95793122228682e-05!GO:0006418;tRNA aminoacylation for protein translation;3.95793122228682e-05!GO:0043039;tRNA aminoacylation;3.95793122228682e-05!GO:0051188;cofactor biosynthetic process;4.07512779275622e-05!GO:0006261;DNA-dependent DNA replication;4.4125807805814e-05!GO:0008654;phospholipid biosynthetic process;4.42340551069476e-05!GO:0007264;small GTPase mediated signal transduction;4.96253449640275e-05!GO:0030029;actin filament-based process;5.0498120816568e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.38465111572027e-05!GO:0035257;nuclear hormone receptor binding;5.70313497079369e-05!GO:0051187;cofactor catabolic process;6.4985873803885e-05!GO:0016853;isomerase activity;6.65731475139191e-05!GO:0019843;rRNA binding;6.95520287288428e-05!GO:0007051;spindle organization and biogenesis;7.35261550389003e-05!GO:0005815;microtubule organizing center;8.07064331596582e-05!GO:0030118;clathrin coat;8.58469752204101e-05!GO:0005762;mitochondrial large ribosomal subunit;0.000100940996334022!GO:0000315;organellar large ribosomal subunit;0.000100940996334022!GO:0003724;RNA helicase activity;0.000118502489285656!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000122577016492996!GO:0005657;replication fork;0.00013457206783772!GO:0051789;response to protein stimulus;0.00013457206783772!GO:0006986;response to unfolded protein;0.00013457206783772!GO:0008094;DNA-dependent ATPase activity;0.000140241545213837!GO:0003690;double-stranded DNA binding;0.000147182938627888!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000150259465454502!GO:0030133;transport vesicle;0.00015042795937141!GO:0009117;nucleotide metabolic process;0.000162189026055828!GO:0043021;ribonucleoprotein binding;0.000168008363861124!GO:0065009;regulation of a molecular function;0.000171327274290704!GO:0005769;early endosome;0.000174375627084977!GO:0007010;cytoskeleton organization and biogenesis;0.000176723283634968!GO:0048471;perinuclear region of cytoplasm;0.000183163840180705!GO:0000139;Golgi membrane;0.000195051149287913!GO:0003729;mRNA binding;0.000204518409263642!GO:0006350;transcription;0.00021070020034026!GO:0000314;organellar small ribosomal subunit;0.000215025967495846!GO:0005763;mitochondrial small ribosomal subunit;0.000215025967495846!GO:0010468;regulation of gene expression;0.000225055457615944!GO:0045892;negative regulation of transcription, DNA-dependent;0.000237780615504487!GO:0006752;group transfer coenzyme metabolic process;0.000241316936304454!GO:0008250;oligosaccharyl transferase complex;0.000244448884252095!GO:0016740;transferase activity;0.000259639031578602!GO:0005525;GTP binding;0.000293564533540932!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000293727210725175!GO:0016044;membrane organization and biogenesis;0.000299717646534885!GO:0006612;protein targeting to membrane;0.000302887393182109!GO:0051168;nuclear export;0.000310532401806765!GO:0046489;phosphoinositide biosynthetic process;0.00031114208494091!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000344221815045909!GO:0008361;regulation of cell size;0.000361169704019333!GO:0030867;rough endoplasmic reticulum membrane;0.000363899859360559!GO:0016787;hydrolase activity;0.000401153523933311!GO:0004576;oligosaccharyl transferase activity;0.000421533710374505!GO:0000776;kinetochore;0.000447266521939666!GO:0030119;AP-type membrane coat adaptor complex;0.000452107241927949!GO:0015980;energy derivation by oxidation of organic compounds;0.00046758670450404!GO:0005048;signal sequence binding;0.000473819466877614!GO:0051252;regulation of RNA metabolic process;0.000484624552373984!GO:0001558;regulation of cell growth;0.000492649096046923!GO:0016779;nucleotidyltransferase activity;0.000497059819640494!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000513382428732739!GO:0045454;cell redox homeostasis;0.000520437620318661!GO:0045893;positive regulation of transcription, DNA-dependent;0.000523948518496158!GO:0046474;glycerophospholipid biosynthetic process;0.000577233879408653!GO:0016049;cell growth;0.000673709247788983!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000676523873369153!GO:0030131;clathrin adaptor complex;0.000693355087606881!GO:0048518;positive regulation of biological process;0.000701170563686031!GO:0051920;peroxiredoxin activity;0.000720912323561783!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000727514718709899!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000730213057819601!GO:0030663;COPI coated vesicle membrane;0.000784421909592535!GO:0030126;COPI vesicle coat;0.000784421909592535!GO:0005885;Arp2/3 protein complex;0.00081305644139192!GO:0009967;positive regulation of signal transduction;0.000820955991164174!GO:0030057;desmosome;0.000836710294314991!GO:0030659;cytoplasmic vesicle membrane;0.000881345694342716!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000914727678890457!GO:0000082;G1/S transition of mitotic cell cycle;0.00100574293672211!GO:0018196;peptidyl-asparagine modification;0.00108262858402711!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00108262858402711!GO:0009108;coenzyme biosynthetic process;0.00108262858402711!GO:0030658;transport vesicle membrane;0.00110736610051944!GO:0048468;cell development;0.0011158035156609!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00130171785818906!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00130171785818906!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00130171785818906!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00130970661981396!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00131548200576313!GO:0007265;Ras protein signal transduction;0.00133015661507158!GO:0030384;phosphoinositide metabolic process;0.00133273213452496!GO:0003684;damaged DNA binding;0.00133273213452496!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00138187843051604!GO:0001726;ruffle;0.00138466202595041!GO:0005905;coated pit;0.00150840904338403!GO:0008186;RNA-dependent ATPase activity;0.00154722697319168!GO:0044433;cytoplasmic vesicle part;0.00163735443128634!GO:0030132;clathrin coat of coated pit;0.00163735443128634!GO:0008022;protein C-terminus binding;0.00164070010148519!GO:0048500;signal recognition particle;0.00166926291518939!GO:0006891;intra-Golgi vesicle-mediated transport;0.00170365727487062!GO:0012506;vesicle membrane;0.0017600288149!GO:0005774;vacuolar membrane;0.00177278757303655!GO:0005586;collagen type III;0.00178040942536365!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00179518112861239!GO:0048487;beta-tubulin binding;0.00179518112861239!GO:0030176;integral to endoplasmic reticulum membrane;0.00182322152858749!GO:0006417;regulation of translation;0.00198663197947723!GO:0000075;cell cycle checkpoint;0.00207062079658341!GO:0032561;guanyl ribonucleotide binding;0.00207062079658341!GO:0019001;guanyl nucleotide binding;0.00207062079658341!GO:0006650;glycerophospholipid metabolic process;0.00210332310368157!GO:0016363;nuclear matrix;0.00211771921111904!GO:0043681;protein import into mitochondrion;0.0022959082190726!GO:0000059;protein import into nucleus, docking;0.00231747033196833!GO:0051128;regulation of cellular component organization and biogenesis;0.00232724894092682!GO:0007050;cell cycle arrest;0.00232938372389711!GO:0007242;intracellular signaling cascade;0.00255333864251691!GO:0006302;double-strand break repair;0.00258470305954708!GO:0003682;chromatin binding;0.0026291730360555!GO:0045941;positive regulation of transcription;0.0026291730360555!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00264874978332204!GO:0030137;COPI-coated vesicle;0.00265681503768074!GO:0030521;androgen receptor signaling pathway;0.00271732863673904!GO:0016197;endosome transport;0.0028730307629431!GO:0007088;regulation of mitosis;0.00287626139036055!GO:0046983;protein dimerization activity;0.00288148726168255!GO:0043488;regulation of mRNA stability;0.00290049940602353!GO:0043487;regulation of RNA stability;0.00290049940602353!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00301962751699087!GO:0032774;RNA biosynthetic process;0.00310861533566716!GO:0030660;Golgi-associated vesicle membrane;0.00314970438076817!GO:0006506;GPI anchor biosynthetic process;0.00317733176436569!GO:0030125;clathrin vesicle coat;0.00322576153880322!GO:0030665;clathrin coated vesicle membrane;0.00322576153880322!GO:0003899;DNA-directed RNA polymerase activity;0.00327836404424661!GO:0006351;transcription, DNA-dependent;0.00329058482407756!GO:0006402;mRNA catabolic process;0.00345522043251642!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00358329702031776!GO:0031072;heat shock protein binding;0.00379156869554991!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00379156869554991!GO:0045047;protein targeting to ER;0.00379156869554991!GO:0007052;mitotic spindle organization and biogenesis;0.00385225161457283!GO:0004674;protein serine/threonine kinase activity;0.00393992821202961!GO:0015631;tubulin binding;0.00401275136001053!GO:0004004;ATP-dependent RNA helicase activity;0.00406475971959054!GO:0006401;RNA catabolic process;0.00407056879790921!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00411784315475818!GO:0035258;steroid hormone receptor binding;0.00447332624359303!GO:0007040;lysosome organization and biogenesis;0.00467516359974996!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00476958109189817!GO:0007059;chromosome segregation;0.00498191450962746!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00503009143751895!GO:0006505;GPI anchor metabolic process;0.0050665734265789!GO:0040008;regulation of growth;0.0050665734265789!GO:0005684;U2-dependent spliceosome;0.00513247617728493!GO:0031543;peptidyl-proline dioxygenase activity;0.00515463542898076!GO:0003711;transcription elongation regulator activity;0.00530572878820212!GO:0050790;regulation of catalytic activity;0.00548316249857175!GO:0008312;7S RNA binding;0.00557529360486533!GO:0045045;secretory pathway;0.00561150239337233!GO:0005083;small GTPase regulator activity;0.00581467543079012!GO:0044437;vacuolar part;0.00581467543079012!GO:0006611;protein export from nucleus;0.0059143332858755!GO:0051338;regulation of transferase activity;0.00598883352921433!GO:0050811;GABA receptor binding;0.00636607402424915!GO:0051087;chaperone binding;0.00660672572355017!GO:0008139;nuclear localization sequence binding;0.00681568461448387!GO:0005637;nuclear inner membrane;0.00709018358111325!GO:0005869;dynactin complex;0.00710011619880605!GO:0005791;rough endoplasmic reticulum;0.00713424836202702!GO:0006497;protein amino acid lipidation;0.00739652961707719!GO:0019867;outer membrane;0.00750634309573101!GO:0006626;protein targeting to mitochondrion;0.00750862916104386!GO:0030518;steroid hormone receptor signaling pathway;0.00755100871553868!GO:0031968;organelle outer membrane;0.00779526785721995!GO:0030041;actin filament polymerization;0.00781747767815336!GO:0005765;lysosomal membrane;0.00793316177651172!GO:0006818;hydrogen transport;0.00814383204883983!GO:0008180;signalosome;0.00818112258892486!GO:0045449;regulation of transcription;0.00821081708335665!GO:0006509;membrane protein ectodomain proteolysis;0.00828684832668182!GO:0033619;membrane protein proteolysis;0.00828684832668182!GO:0048144;fibroblast proliferation;0.00828684832668182!GO:0048145;regulation of fibroblast proliferation;0.00828684832668182!GO:0032508;DNA duplex unwinding;0.00834585945444144!GO:0032392;DNA geometric change;0.00834585945444144!GO:0051052;regulation of DNA metabolic process;0.00864932130536751!GO:0048146;positive regulation of fibroblast proliferation;0.00866795395455847!GO:0005741;mitochondrial outer membrane;0.00876377490713079!GO:0046822;regulation of nucleocytoplasmic transport;0.00928072776548811!GO:0019798;procollagen-proline dioxygenase activity;0.00933878119274026!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00994033244325019!GO:0006950;response to stress;0.0100301694154678!GO:0015992;proton transport;0.0102421716844302!GO:0030522;intracellular receptor-mediated signaling pathway;0.0103118064280523!GO:0006414;translational elongation;0.0104923644502018!GO:0043022;ribosome binding;0.0104923644502018!GO:0031902;late endosome membrane;0.010839717578362!GO:0008287;protein serine/threonine phosphatase complex;0.0108905395030613!GO:0006268;DNA unwinding during replication;0.010984879695711!GO:0007033;vacuole organization and biogenesis;0.0110062277383728!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0110412840084464!GO:0015002;heme-copper terminal oxidase activity;0.0110412840084464!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0110412840084464!GO:0004129;cytochrome-c oxidase activity;0.0110412840084464!GO:0006383;transcription from RNA polymerase III promoter;0.0112727248514793!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0112727248514793!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0112727248514793!GO:0043549;regulation of kinase activity;0.0113086835242066!GO:0031326;regulation of cellular biosynthetic process;0.0113086835242066!GO:0051235;maintenance of localization;0.0116273610103211!GO:0030134;ER to Golgi transport vesicle;0.0116889438208655!GO:0016251;general RNA polymerase II transcription factor activity;0.0116910612122428!GO:0032940;secretion by cell;0.0118309398301753!GO:0031529;ruffle organization and biogenesis;0.0120356646612996!GO:0006354;RNA elongation;0.0122617388986807!GO:0045185;maintenance of protein localization;0.0124521790952173!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0126301699783483!GO:0030127;COPII vesicle coat;0.0128070912681741!GO:0012507;ER to Golgi transport vesicle membrane;0.0128070912681741!GO:0017166;vinculin binding;0.0138723922077922!GO:0003678;DNA helicase activity;0.0140757849526956!GO:0016272;prefoldin complex;0.0140757849526956!GO:0032507;maintenance of cellular protein localization;0.0140757849526956!GO:0005856;cytoskeleton;0.0144445399355009!GO:0000086;G2/M transition of mitotic cell cycle;0.0150617380213944!GO:0050681;androgen receptor binding;0.0152164314981505!GO:0051098;regulation of binding;0.0159943350732059!GO:0008154;actin polymerization and/or depolymerization;0.0162468528958935!GO:0006839;mitochondrial transport;0.0163851882541928!GO:0008234;cysteine-type peptidase activity;0.0166257674648423!GO:0030833;regulation of actin filament polymerization;0.0167214974018731!GO:0009889;regulation of biosynthetic process;0.0167368951289525!GO:0008632;apoptotic program;0.0168706595776799!GO:0008601;protein phosphatase type 2A regulator activity;0.01753639288674!GO:0007006;mitochondrial membrane organization and biogenesis;0.0177440824435666!GO:0003746;translation elongation factor activity;0.0177587181385682!GO:0046467;membrane lipid biosynthetic process;0.0181786021389173!GO:0016584;nucleosome positioning;0.0186077594282779!GO:0006338;chromatin remodeling;0.0189225334510446!GO:0009165;nucleotide biosynthetic process;0.0189564154021235!GO:0006405;RNA export from nucleus;0.0192235294791377!GO:0031625;ubiquitin protein ligase binding;0.0195084117976847!GO:0007093;mitotic cell cycle checkpoint;0.0196227308986284!GO:0003923;GPI-anchor transamidase activity;0.0199263996801694!GO:0016255;attachment of GPI anchor to protein;0.0199263996801694!GO:0042765;GPI-anchor transamidase complex;0.0199263996801694!GO:0006284;base-excision repair;0.0202990860316896!GO:0045334;clathrin-coated endocytic vesicle;0.0203097894357261!GO:0005938;cell cortex;0.0203209207641163!GO:0022890;inorganic cation transmembrane transporter activity;0.0205338249504305!GO:0004527;exonuclease activity;0.0211387071739284!GO:0006487;protein amino acid N-linked glycosylation;0.0214752943406984!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0219471141019718!GO:0005832;chaperonin-containing T-complex;0.0219947896441991!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0219947896441991!GO:0010257;NADH dehydrogenase complex assembly;0.0219947896441991!GO:0033108;mitochondrial respiratory chain complex assembly;0.0219947896441991!GO:0051101;regulation of DNA binding;0.0221600984735163!GO:0019904;protein domain specific binding;0.0221666665554136!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0221862092192024!GO:0009116;nucleoside metabolic process;0.0221862092192024!GO:0030027;lamellipodium;0.0222270523049471!GO:0042158;lipoprotein biosynthetic process;0.0223631461121736!GO:0003702;RNA polymerase II transcription factor activity;0.0223719113576921!GO:0043596;nuclear replication fork;0.0225118790424807!GO:0035035;histone acetyltransferase binding;0.0227122534110504!GO:0031124;mRNA 3'-end processing;0.0229470058376155!GO:0006897;endocytosis;0.0233416478651307!GO:0010324;membrane invagination;0.0233416478651307!GO:0045859;regulation of protein kinase activity;0.0234560556940886!GO:0000152;nuclear ubiquitin ligase complex;0.0234560556940886!GO:0004177;aminopeptidase activity;0.023698652235175!GO:0006352;transcription initiation;0.0238170061385564!GO:0009966;regulation of signal transduction;0.0239850234312555!GO:0043065;positive regulation of apoptosis;0.0243274271363928!GO:0005874;microtubule;0.0246470859776491!GO:0004518;nuclease activity;0.0249036414060918!GO:0051651;maintenance of cellular localization;0.0250630793595632!GO:0030880;RNA polymerase complex;0.0258172277148471!GO:0006289;nucleotide-excision repair;0.0258949105692378!GO:0003779;actin binding;0.0260310856908161!GO:0006376;mRNA splice site selection;0.0265214846652142!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0265214846652142!GO:0000228;nuclear chromosome;0.0266035848981734!GO:0000159;protein phosphatase type 2A complex;0.0285281196303791!GO:0006310;DNA recombination;0.0286053996900796!GO:0030832;regulation of actin filament length;0.0287461636096586!GO:0005876;spindle microtubule;0.0290085293656453!GO:0043068;positive regulation of programmed cell death;0.0301529595237793!GO:0008064;regulation of actin polymerization and/or depolymerization;0.03041162268094!GO:0030031;cell projection biogenesis;0.0307919926025517!GO:0046966;thyroid hormone receptor binding;0.0309220855174567!GO:0007034;vacuolar transport;0.0310460242178814!GO:0009893;positive regulation of metabolic process;0.0319328621069527!GO:0030149;sphingolipid catabolic process;0.0324825818008733!GO:0008637;apoptotic mitochondrial changes;0.0325652406784678!GO:0032535;regulation of cellular component size;0.0328553419032134!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0340884313288549!GO:0006984;ER-nuclear signaling pathway;0.0341751687748699!GO:0046483;heterocycle metabolic process;0.0341751687748699!GO:0006892;post-Golgi vesicle-mediated transport;0.0341751687748699!GO:0030128;clathrin coat of endocytic vesicle;0.0341751687748699!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0341751687748699!GO:0030122;AP-2 adaptor complex;0.0341751687748699!GO:0031418;L-ascorbic acid binding;0.0349804158689372!GO:0003677;DNA binding;0.0355432772408999!GO:0031371;ubiquitin conjugating enzyme complex;0.0362916649504174!GO:0006355;regulation of transcription, DNA-dependent;0.0363227350327739!GO:0030911;TPR domain binding;0.0402845210885332!GO:0005801;cis-Golgi network;0.0403109990831398!GO:0000209;protein polyubiquitination;0.0403109990831398!GO:0008538;proteasome activator activity;0.0406284062401734!GO:0003756;protein disulfide isomerase activity;0.0415499070730626!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0415499070730626!GO:0040029;regulation of gene expression, epigenetic;0.0421702925041429!GO:0007266;Rho protein signal transduction;0.0433262596601406!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0435212750680638!GO:0033043;regulation of organelle organization and biogenesis;0.0435212750680638!GO:0005680;anaphase-promoting complex;0.0437782024565808!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0441588408727769!GO:0000049;tRNA binding;0.0442851088884207!GO:0045936;negative regulation of phosphate metabolic process;0.044423290755107!GO:0030332;cyclin binding;0.0456527624988406!GO:0016301;kinase activity;0.0456771168630402!GO:0001836;release of cytochrome c from mitochondria;0.0456771168630402!GO:0015629;actin cytoskeleton;0.0458175647381903!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0460265421388039!GO:0015399;primary active transmembrane transporter activity;0.0460265421388039!GO:0046982;protein heterodimerization activity;0.0460675048524376!GO:0006270;DNA replication initiation;0.0460675048524376!GO:0006518;peptide metabolic process;0.0461148290024633!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0462342210834922!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0462342210834922!GO:0008047;enzyme activator activity;0.0462696988920789!GO:0005784;translocon complex;0.0462696988920789!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0462696988920789!GO:0005925;focal adhesion;0.0463201740003823!GO:0007346;regulation of progression through mitotic cell cycle;0.0466571048501404!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0476622336514605!GO:0000428;DNA-directed RNA polymerase complex;0.0476622336514605!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0476653692372902!GO:0006779;porphyrin biosynthetic process;0.0481172309106381!GO:0033014;tetrapyrrole biosynthetic process;0.0481172309106381!GO:0051656;establishment of organelle localization;0.0485384216118984!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0486848698748624!GO:0001527;microfibril;0.0488993785578975!GO:0031901;early endosome membrane;0.0493670231712737!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0494014688064149!GO:0051287;NAD binding;0.0494845230229042 | |||
|sample_id=12236 | |sample_id=12236 | ||
|sample_note=Jan 20 librarian | |sample_note=Jan 20 librarian | ||
| Line 76: | Line 100: | ||
|sample_tissue=amnion | |sample_tissue=amnion | ||
|top_motifs=NKX2-1,4:1.90011496296;PAX4:1.80147031272;FOXM1:1.69754144552;XCPE1{core}:1.66918982315;FOXL1:1.54267771411;RORA:1.42610931282;SNAI1..3:1.38995863924;ZNF384:1.33894271031;AIRE:1.23005089367;GCM1,2:1.21613351658;FOXO1,3,4:1.19667151609;TP53:1.15501124441;ADNP_IRX_SIX_ZHX:1.14717346896;GFI1:1.03176557181;MAZ:1.0178351881;HAND1,2:0.985151120712;EP300:0.978525934352;ZEB1:0.975213247641;HOX{A5,B5}:0.973855933511;HOX{A6,A7,B6,B7}:0.954305359837;TBP:0.944042478116;TEAD1:0.935316125698;PAX5:0.883785238406;SP1:0.865994448357;ZNF148:0.850276574259;E2F1..5:0.805692734198;PPARG:0.791318854926;FOX{I1,J2}:0.778458973267;TFAP2{A,C}:0.753446711525;CDC5L:0.693202016959;NKX2-3_NKX2-5:0.667426831485;NFY{A,B,C}:0.666270089255;POU1F1:0.630390137003;HMGA1,2:0.567569553052;GLI1..3:0.559676970781;STAT1,3:0.548551609661;PBX1:0.507081191136;BPTF:0.504053397027;FOXA2:0.501209811195;TFCP2:0.49156793502;RBPJ:0.481105745195;PAX8:0.446970895098;TBX4,5:0.416262024342;NRF1:0.411386269399;DBP:0.385910824053;SMAD1..7,9:0.383421381781;FOXN1:0.379216629543;OCT4_SOX2{dimer}:0.367449439905;FOS_FOS{B,L1}_JUN{B,D}:0.3554253361;ZNF143:0.35317219062;MED-1{core}:0.340770199875;FOX{D1,D2}:0.339317767702;HLF:0.336768180987;HIF1A:0.316774014812;EVI1:0.311528880785;IKZF1:0.297919182969;POU2F1..3:0.294272997134;MYOD1:0.28784465097;NKX2-2,8:0.263609906103;ZIC1..3:0.258614997561;HSF1,2:0.253266723372;ATF2:0.246576769484;BACH2:0.242612330144;TFDP1:0.239085195143;NANOG{mouse}:0.232339183528;ZNF238:0.222494312891;HMX1:0.213997193548;GTF2I:0.212061397696;JUN:0.205243885763;SREBF1,2:0.19404731155;SOX5:0.183585465699;MZF1:0.180611681721;MTF1:0.164393629886;RFX2..5_RFXANK_RFXAP:0.159331402937;ESR1:0.156483227611;ELK1,4_GABP{A,B1}:0.122514507049;DMAP1_NCOR{1,2}_SMARC:0.121573889906;GATA6:0.113663546026;ALX4:0.102934709588;ESRRA:0.0816914845738;UFEwm:0.0775974738024;PATZ1:0.0682554710378;TLX1..3_NFIC{dimer}:0.0605359829233;ZBTB6:0.0584833393372;POU6F1:0.0541179610717;ATF6:0.0408765760364;HIC1:0.0305260487542;TFAP2B:0.00881689216965;LEF1_TCF7_TCF7L1,2:0.00861376168946;FOSL2:0.0079691593153;MEF2{A,B,C,D}:-0.00257077081635;NFE2:-0.0108999933554;PRRX1,2:-0.0167306876226;RFX1:-0.0251355215276;NR3C1:-0.0340510160727;MYB:-0.0513747640822;MYBL2:-0.0525930940554;ZNF423:-0.0676444239415;SOX{8,9,10}:-0.0708270264256;RUNX1..3:-0.073048668965;IRF7:-0.0739513908997;EBF1:-0.0852619774226;EN1,2:-0.0903567969501;NFKB1_REL_RELA:-0.106872115086;STAT5{A,B}:-0.111579344246;LHX3,4:-0.11986319467;EGR1..3:-0.120309979339;HNF1A:-0.121337487462;ELF1,2,4:-0.121499608989;GZF1:-0.130035760182;PDX1:-0.147905769358;NHLH1,2:-0.149937376198;TAL1_TCF{3,4,12}:-0.152492653036;HOXA9_MEIS1:-0.156004621533;SOX2:-0.16143867417;RXRA_VDR{dimer}:-0.167768406187;XBP1:-0.185574943635;TGIF1:-0.204333465601;MTE{core}:-0.205915458008;SPZ1:-0.209150811143;HOX{A4,D4}:-0.212076897681;SOX17:-0.214791681749;MYFfamily:-0.221261374473;ATF4:-0.231427342865;PAX1,9:-0.237796620917;NFIL3:-0.24010374499;PAX2:-0.256255291113;ARID5B:-0.2944528023;SPI1:-0.297328418285;GFI1B:-0.303676802824;FOXQ1:-0.305336478107;ETS1,2:-0.310519008961;NKX3-2:-0.323942603141;PITX1..3:-0.325377320914;bHLH_family:-0.34219878304;ALX1:-0.348076149626;CRX:-0.350874769584;POU3F1..4:-0.351517753739;NR6A1:-0.368498456372;KLF4:-0.375472329637;YY1:-0.377882218828;BREu{core}:-0.377910688988;IRF1,2:-0.386021799125;ATF5_CREB3:-0.386386950743;SPIB:-0.391585042554;CDX1,2,4:-0.402160908025;FOXP3:-0.406746093413;ONECUT1,2:-0.439012881488;HNF4A_NR2F1,2:-0.442666394913;NR1H4:-0.455592179825;TLX2:-0.459512801692;RXR{A,B,G}:-0.468457134127;CUX2:-0.494810143155;GTF2A1,2:-0.498319245107;HBP1_HMGB_SSRP1_UBTF:-0.501115677693;SRF:-0.528625162546;POU5F1:-0.529351627252;ZFP161:-0.532898070249;VSX1,2:-0.546455779914;REST:-0.546492028371;CEBPA,B_DDIT3:-0.546554740237;NFATC1..3:-0.54780464619;AHR_ARNT_ARNT2:-0.551152591948;FOXP1:-0.562510276985;GATA4:-0.584190007749;TFAP4:-0.586543403612;FOX{F1,F2,J1}:-0.624481695235;RREB1:-0.626423729928;NFE2L2:-0.665965151155;CREB1:-0.666626106041;AR:-0.672058306878;PAX6:-0.678320220458;LMO2:-0.690147543372;NANOG:-0.763595232326;NKX6-1,2:-0.775157969;TEF:-0.803991203208;PRDM1:-0.92166311614;ZBTB16:-0.921921162437;FOXD3:-1.00813294629;PAX3,7:-1.02700282083;HES1:-1.09928665269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10390163011;IKZF2:-1.12459944253;MAFB:-1.1902351521;STAT2,4,6:-1.23348960006;NR5A1,2:-1.26489300105;TOPORS:-1.30491066372;NFE2L1:-1.32205923782;NKX3-1:-1.34367023572;T:-1.55979782642;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66647220417;NFIX:-1.9953274356 | |top_motifs=NKX2-1,4:1.90011496296;PAX4:1.80147031272;FOXM1:1.69754144552;XCPE1{core}:1.66918982315;FOXL1:1.54267771411;RORA:1.42610931282;SNAI1..3:1.38995863924;ZNF384:1.33894271031;AIRE:1.23005089367;GCM1,2:1.21613351658;FOXO1,3,4:1.19667151609;TP53:1.15501124441;ADNP_IRX_SIX_ZHX:1.14717346896;GFI1:1.03176557181;MAZ:1.0178351881;HAND1,2:0.985151120712;EP300:0.978525934352;ZEB1:0.975213247641;HOX{A5,B5}:0.973855933511;HOX{A6,A7,B6,B7}:0.954305359837;TBP:0.944042478116;TEAD1:0.935316125698;PAX5:0.883785238406;SP1:0.865994448357;ZNF148:0.850276574259;E2F1..5:0.805692734198;PPARG:0.791318854926;FOX{I1,J2}:0.778458973267;TFAP2{A,C}:0.753446711525;CDC5L:0.693202016959;NKX2-3_NKX2-5:0.667426831485;NFY{A,B,C}:0.666270089255;POU1F1:0.630390137003;HMGA1,2:0.567569553052;GLI1..3:0.559676970781;STAT1,3:0.548551609661;PBX1:0.507081191136;BPTF:0.504053397027;FOXA2:0.501209811195;TFCP2:0.49156793502;RBPJ:0.481105745195;PAX8:0.446970895098;TBX4,5:0.416262024342;NRF1:0.411386269399;DBP:0.385910824053;SMAD1..7,9:0.383421381781;FOXN1:0.379216629543;OCT4_SOX2{dimer}:0.367449439905;FOS_FOS{B,L1}_JUN{B,D}:0.3554253361;ZNF143:0.35317219062;MED-1{core}:0.340770199875;FOX{D1,D2}:0.339317767702;HLF:0.336768180987;HIF1A:0.316774014812;EVI1:0.311528880785;IKZF1:0.297919182969;POU2F1..3:0.294272997134;MYOD1:0.28784465097;NKX2-2,8:0.263609906103;ZIC1..3:0.258614997561;HSF1,2:0.253266723372;ATF2:0.246576769484;BACH2:0.242612330144;TFDP1:0.239085195143;NANOG{mouse}:0.232339183528;ZNF238:0.222494312891;HMX1:0.213997193548;GTF2I:0.212061397696;JUN:0.205243885763;SREBF1,2:0.19404731155;SOX5:0.183585465699;MZF1:0.180611681721;MTF1:0.164393629886;RFX2..5_RFXANK_RFXAP:0.159331402937;ESR1:0.156483227611;ELK1,4_GABP{A,B1}:0.122514507049;DMAP1_NCOR{1,2}_SMARC:0.121573889906;GATA6:0.113663546026;ALX4:0.102934709588;ESRRA:0.0816914845738;UFEwm:0.0775974738024;PATZ1:0.0682554710378;TLX1..3_NFIC{dimer}:0.0605359829233;ZBTB6:0.0584833393372;POU6F1:0.0541179610717;ATF6:0.0408765760364;HIC1:0.0305260487542;TFAP2B:0.00881689216965;LEF1_TCF7_TCF7L1,2:0.00861376168946;FOSL2:0.0079691593153;MEF2{A,B,C,D}:-0.00257077081635;NFE2:-0.0108999933554;PRRX1,2:-0.0167306876226;RFX1:-0.0251355215276;NR3C1:-0.0340510160727;MYB:-0.0513747640822;MYBL2:-0.0525930940554;ZNF423:-0.0676444239415;SOX{8,9,10}:-0.0708270264256;RUNX1..3:-0.073048668965;IRF7:-0.0739513908997;EBF1:-0.0852619774226;EN1,2:-0.0903567969501;NFKB1_REL_RELA:-0.106872115086;STAT5{A,B}:-0.111579344246;LHX3,4:-0.11986319467;EGR1..3:-0.120309979339;HNF1A:-0.121337487462;ELF1,2,4:-0.121499608989;GZF1:-0.130035760182;PDX1:-0.147905769358;NHLH1,2:-0.149937376198;TAL1_TCF{3,4,12}:-0.152492653036;HOXA9_MEIS1:-0.156004621533;SOX2:-0.16143867417;RXRA_VDR{dimer}:-0.167768406187;XBP1:-0.185574943635;TGIF1:-0.204333465601;MTE{core}:-0.205915458008;SPZ1:-0.209150811143;HOX{A4,D4}:-0.212076897681;SOX17:-0.214791681749;MYFfamily:-0.221261374473;ATF4:-0.231427342865;PAX1,9:-0.237796620917;NFIL3:-0.24010374499;PAX2:-0.256255291113;ARID5B:-0.2944528023;SPI1:-0.297328418285;GFI1B:-0.303676802824;FOXQ1:-0.305336478107;ETS1,2:-0.310519008961;NKX3-2:-0.323942603141;PITX1..3:-0.325377320914;bHLH_family:-0.34219878304;ALX1:-0.348076149626;CRX:-0.350874769584;POU3F1..4:-0.351517753739;NR6A1:-0.368498456372;KLF4:-0.375472329637;YY1:-0.377882218828;BREu{core}:-0.377910688988;IRF1,2:-0.386021799125;ATF5_CREB3:-0.386386950743;SPIB:-0.391585042554;CDX1,2,4:-0.402160908025;FOXP3:-0.406746093413;ONECUT1,2:-0.439012881488;HNF4A_NR2F1,2:-0.442666394913;NR1H4:-0.455592179825;TLX2:-0.459512801692;RXR{A,B,G}:-0.468457134127;CUX2:-0.494810143155;GTF2A1,2:-0.498319245107;HBP1_HMGB_SSRP1_UBTF:-0.501115677693;SRF:-0.528625162546;POU5F1:-0.529351627252;ZFP161:-0.532898070249;VSX1,2:-0.546455779914;REST:-0.546492028371;CEBPA,B_DDIT3:-0.546554740237;NFATC1..3:-0.54780464619;AHR_ARNT_ARNT2:-0.551152591948;FOXP1:-0.562510276985;GATA4:-0.584190007749;TFAP4:-0.586543403612;FOX{F1,F2,J1}:-0.624481695235;RREB1:-0.626423729928;NFE2L2:-0.665965151155;CREB1:-0.666626106041;AR:-0.672058306878;PAX6:-0.678320220458;LMO2:-0.690147543372;NANOG:-0.763595232326;NKX6-1,2:-0.775157969;TEF:-0.803991203208;PRDM1:-0.92166311614;ZBTB16:-0.921921162437;FOXD3:-1.00813294629;PAX3,7:-1.02700282083;HES1:-1.09928665269;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.10390163011;IKZF2:-1.12459944253;MAFB:-1.1902351521;STAT2,4,6:-1.23348960006;NR5A1,2:-1.26489300105;TOPORS:-1.30491066372;NFE2L1:-1.32205923782;NKX3-1:-1.34367023572;T:-1.55979782642;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.66647220417;NFIX:-1.9953274356 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12236-129G4;search_select_hide=table117:FF:12236-129G4 | |||
}} | }} | ||
Latest revision as of 18:36, 4 June 2020
| Name: | amniotic membrane cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12503 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12503
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12503
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0729 |
| 10 | 10 | 0.51 |
| 100 | 100 | 0.678 |
| 101 | 101 | 0.593 |
| 102 | 102 | 0.978 |
| 103 | 103 | 0.666 |
| 104 | 104 | 0.588 |
| 105 | 105 | 0.282 |
| 106 | 106 | 0.049 |
| 107 | 107 | 0.339 |
| 108 | 108 | 0.379 |
| 109 | 109 | 0.326 |
| 11 | 11 | 0.26 |
| 110 | 110 | 0.505 |
| 111 | 111 | 0.236 |
| 112 | 112 | 0.423 |
| 113 | 113 | 0.00476 |
| 114 | 114 | 0.0618 |
| 115 | 115 | 0.752 |
| 116 | 116 | 0.122 |
| 117 | 117 | 0.521 |
| 118 | 118 | 0.317 |
| 119 | 119 | 0.284 |
| 12 | 12 | 0.729 |
| 120 | 120 | 0.345 |
| 121 | 121 | 0.365 |
| 122 | 122 | 0.493 |
| 123 | 123 | 7.62243e-4 |
| 124 | 124 | 0.0167 |
| 125 | 125 | 0.793 |
| 126 | 126 | 0.883 |
| 127 | 127 | 0.887 |
| 128 | 128 | 0.0345 |
| 129 | 129 | 0.625 |
| 13 | 13 | 0.789 |
| 130 | 130 | 0.949 |
| 131 | 131 | 0.00781 |
| 132 | 132 | 0.906 |
| 133 | 133 | 0.977 |
| 134 | 134 | 0.0274 |
| 135 | 135 | 0.908 |
| 136 | 136 | 0.00903 |
| 137 | 137 | 0.291 |
| 138 | 138 | 0.132 |
| 139 | 139 | 0.00545 |
| 14 | 14 | 0.81 |
| 140 | 140 | 0.903 |
| 141 | 141 | 0.433 |
| 142 | 142 | 0.103 |
| 143 | 143 | 0.303 |
| 144 | 144 | 0.864 |
| 145 | 145 | 0.735 |
| 146 | 146 | 0.0175 |
| 147 | 147 | 0.157 |
| 148 | 148 | 0.305 |
| 149 | 149 | 0.98 |
| 15 | 15 | 0.802 |
| 150 | 150 | 0.789 |
| 151 | 151 | 0.968 |
| 152 | 152 | 0.0649 |
| 153 | 153 | 0.224 |
| 154 | 154 | 0.223 |
| 155 | 155 | 0.213 |
| 156 | 156 | 0.429 |
| 157 | 157 | 0.249 |
| 158 | 158 | 0.509 |
| 159 | 159 | 0.92 |
| 16 | 16 | 0.382 |
| 160 | 160 | 0.945 |
| 161 | 161 | 0.675 |
| 162 | 162 | 0.453 |
| 163 | 163 | 0.365 |
| 164 | 164 | 0.943 |
| 165 | 165 | 0.569 |
| 166 | 166 | 0.827 |
| 167 | 167 | 0.547 |
| 168 | 168 | 0.43 |
| 169 | 169 | 0.331 |
| 17 | 17 | 0.858 |
| 18 | 18 | 0.188 |
| 19 | 19 | 0.278 |
| 2 | 2 | 0.691 |
| 20 | 20 | 0.236 |
| 21 | 21 | 0.105 |
| 22 | 22 | 0.323 |
| 23 | 23 | 0.32 |
| 24 | 24 | 0.523 |
| 25 | 25 | 0.815 |
| 26 | 26 | 0.241 |
| 27 | 27 | 0.29 |
| 28 | 28 | 0.833 |
| 29 | 29 | 0.117 |
| 3 | 3 | 0.94 |
| 30 | 30 | 0.177 |
| 31 | 31 | 0.837 |
| 32 | 32 | 0.648 |
| 33 | 33 | 0.782 |
| 34 | 34 | 0.611 |
| 35 | 35 | 0.0126 |
| 36 | 36 | 0.0359 |
| 37 | 37 | 0.0384 |
| 38 | 38 | 0.424 |
| 39 | 39 | 0.372 |
| 4 | 4 | 0.852 |
| 40 | 40 | 0.974 |
| 41 | 41 | 0.292 |
| 42 | 42 | 0.789 |
| 43 | 43 | 0.234 |
| 44 | 44 | 0.529 |
| 45 | 45 | 0.176 |
| 46 | 46 | 0.0584 |
| 47 | 47 | 0.115 |
| 48 | 48 | 0.718 |
| 49 | 49 | 0.0623 |
| 5 | 5 | 0.89 |
| 50 | 50 | 0.725 |
| 51 | 51 | 0.771 |
| 52 | 52 | 0.752 |
| 53 | 53 | 0.094 |
| 54 | 54 | 0.941 |
| 55 | 55 | 0.329 |
| 56 | 56 | 0.971 |
| 57 | 57 | 0.617 |
| 58 | 58 | 0.278 |
| 59 | 59 | 0.777 |
| 6 | 6 | 0.808 |
| 60 | 60 | 0.068 |
| 61 | 61 | 0.986 |
| 62 | 62 | 0.224 |
| 63 | 63 | 0.147 |
| 64 | 64 | 0.887 |
| 65 | 65 | 0.257 |
| 66 | 66 | 0.761 |
| 67 | 67 | 0.367 |
| 68 | 68 | 0.21 |
| 69 | 69 | 0.368 |
| 7 | 7 | 0.811 |
| 70 | 70 | 0.136 |
| 71 | 71 | 0.252 |
| 72 | 72 | 0.643 |
| 73 | 73 | 0.264 |
| 74 | 74 | 0.0853 |
| 75 | 75 | 0.624 |
| 76 | 76 | 0.93 |
| 77 | 77 | 0.812 |
| 78 | 78 | 0.198 |
| 79 | 79 | 0.596 |
| 8 | 8 | 0.207 |
| 80 | 80 | 0.414 |
| 81 | 81 | 0.0162 |
| 82 | 82 | 0.052 |
| 83 | 83 | 0.802 |
| 84 | 84 | 0.49 |
| 85 | 85 | 0.118 |
| 86 | 86 | 0.0424 |
| 87 | 87 | 0.626 |
| 88 | 88 | 0.976 |
| 89 | 89 | 0.865 |
| 9 | 9 | 0.809 |
| 90 | 90 | 0.834 |
| 91 | 91 | 0.998 |
| 92 | 92 | 0.251 |
| 93 | 93 | 0.945 |
| 94 | 94 | 0.872 |
| 95 | 95 | 0.491 |
| 96 | 96 | 0.351 |
| 97 | 97 | 0.135 |
| 98 | 98 | 0.202 |
| 99 | 99 | 0.93 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12503
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000010 human amniotic membrane cell- Amnion sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002537 (amnion mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000092 (human amniotic membrane cell sample)
0000101 (sample by species)
0000001 (sample)
0000010 (human amniotic membrane cell- Amnion sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
